Pregenerated sensors for PFN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027805Ensembl transcript IDs: ENSMUST00000066882.10, ENSMUST00000119344.8, ENSMUST00000120289.3, ENSMUST00000122210.2
Found 110 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGAGAATGGAAGCAGACCAAACACCTCGTGTTGGTAGGGAGGGGTaGGAAAGGTGTGACGTACAGAGGCATGCACTTTTTCCTCCCAAC | + |
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Preference number: 1 (lower is better) Translates to: KRMEADQTPRVGREG*ERCDVQRHALFPPN Trigger: GTTGGGAGGAAAAAGTGCATGCCTCTGTACGTCACACCTTTCTCACCCCTCCCTACCAACACGAGGTGTTTGGTCTGCTTCCATTCTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR CCA 90 bp | AATGTCCCTGGGAATTTGATCGGTATGGTTACTGCAGTAAGGTCGTaGGAGGAAGTGCCTTTGCTCTCCAAGCTGCACGCTTCATGTCCT | + |
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Preference number: 1 (lower is better) Translates to: NVPGNLIGMVTAVRS*EEVPLLSKLHASCP Trigger: AGGACATGAAGCGTGCAGCTTGGAGAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGTAACCATACCGATCAAATTCCCAGGGACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR GCA 90 bp | ACTGCAATGACAGAATGTCCCTGGGAATTTGATCGGTATGGTTACTaGAGTAAGGTCGTGGGAGGAAGTGCCTTTGCTCTCCAAGCTGCA | + |
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Preference number: 1 (lower is better) Translates to: TAMTECPWEFDRYGY*SKVVGGSAFALQAA Trigger: TGCAGCTTGGAGAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGTAACCATACCGATCAAATTCCCAGGGACATTCTGTCATTGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 90 bp | GAGCACAGCTGGTGTGCAAGAAAAGACAGGTCTGAGCTACTGCAATaGCAGAATGTCCCTGGGAATTTGATCGGTATGGTTACTGCAGTA | + |
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Preference number: 1 (lower is better) Translates to: EHSWCARKDRSELLQ*QNVPGNLIGMVTAV Trigger: TACTGCAGTAACCATACCGATCAAATTCCCAGGGACATTCTGTCATTGCAGTAGCTCAGACCTGTCTTTTCTTGCACACCAGCTGTGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 90 bp | TACATTTTCTCAAGAGCACAGCTGGTGTGCAAGAAAAGACAGGTCTaGGCTACTGCAATGACAGAATGTCCCTGGGAATTTGATCGGTAT | + |
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Preference number: 1 (lower is better) Translates to: YIFSRAQLVCKKRQV*ATAMTECPWEFDRY Trigger: ATACCGATCAAATTCCCAGGGACATTCTGTCATTGCAGTAGCTCAGACCTGTCTTTTCTTGCACACCAGCTGTGCTCTTGAGAAAATGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR CCA 90 bp | AGGTATAAAGCGAGTTCATATGTTTTCTTGTTAATTGTGCCTGCGTaGACACCTTCCTTTCCCATGACTATAACCAATGCTGGAGTACAC | + |
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Preference number: 1 (lower is better) Translates to: RYKASSYVFLLIVPA*TPSFPMTITNAGVH Trigger: GTGTACTCCAGCATTGGTTATAGTCATGGGAAAGGAAGGTGTCCACGCAGGCACAATTAACAAGAAAACATATGAACTCGCTTTATACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCGGTCGTGGGAGGAAGTaGCTTTGCTCTCCAAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: LDTLQMVMLGYLISIMAAGRGRK*LCSPSC Trigger: GCAGCTTGGAGAGCAAAGGCACTTCCTCCCACGACC...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR CAA 90 bp | TTGATCGGTATGGTTACTGCAGTAAGGTCGTGGGAGGAAGTGCCTTaGCTCTCCAAGCTGCACGCTTCATGTCCTATAGACACTACAAAT | + |
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Preference number: 2 (lower is better) Translates to: LIGMVTAVRSWEEVP*LSKLHASCPIDTTN Trigger: ATTTGTAGTGTCTATAGGACATGAAGCGTGCAGCTTGGAGAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGTAACCATACCGATCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATACTGCTAAGACGAAGTaGTGCCCAACTTGGCATGCC | + |
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Preference number: 2 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYTAKTK*CPTWHA Trigger: GGCATGCCAAGTTGGGCATCACTTCGTCTTAGCAGT...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTTGGTAGGGAGGGGTGAGAAAGGTGTGACGTACAGAGGCATGCACTTTTTCAATGCTCCAAAGTGCTaGAAAGACACTGATCGAGTT | + |
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Preference number: 2 (lower is better) Translates to: VLVGRGEKGVTYRGMHFFNAPKC*KDTDRV Trigger: AACTCGATCAGTGTCTTTTCAGCACTTTGGAGCATT...GAAAAAGTGCATGCCTCTGTACGTCACACCTTTCTCACCCCTCCCTACCAACAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | TTAAATAAACCAGGCACTACACAGAAGAGAATGGAAGCAGACCAAACACCTCGTATGCCCAACTTGGCATaGCCCCTTCCCCCAGTTTCA | + |
|
Preference number: 2 (lower is better) Translates to: LNKPGTTQKRMEADQTPRMPNLA*PLPPVS Trigger: TGAAACTGGGGGAAGGGGGCATGCCAAGTTGGGCAT...ACGAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAGTGCCTGGTTTATTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTCTGAGCTACTGCAATaGCAGAATGTCCCTGGGAAT | + |
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Preference number: 2 (lower is better) Translates to: LDTLQMVMLGYLISIMAASELLQ*QNVPGN Trigger: ATTCCCAGGGACATTCTGTCATTGCAGTAGCTCAGA...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTTAATTGTGCCTGCGTaGACACCTTCCTTTCCCATG | + |
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Preference number: 2 (lower is better) Translates to: PNLACPLPPVSRYHANHYLIVPA*TPSFPM Trigger: CATGGGAAAGGAAGGTGTCCACGCAGGCACAATTAA...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | CCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCATGCCCAACTTGGCATaGCCCCTTCCCCCAGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: PDGYVGIPNIHNGSLYIFMPNLA*PLPPVS Trigger: TGAAACTGGGGGAAGGGGGCATGCCAAGTTGGGCAT...GAAAATGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCGGGAGGAAGTGCCTTTaGTCTCCAAGCTGCACGCTT | + |
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Preference number: 2 (lower is better) Translates to: TSQDSQVHNNATSYKNLSGRKCL*SPSCTL Trigger: AAGCGTGCAGCTTGGAGAGCAAAGGCACTTCCTCCC...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCATGACAGAATGTCCCTaGGAATTTGATCGGTATGGT | + |
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Preference number: 2 (lower is better) Translates to: LDTLQMVMLGYLISIMAAMTECP*EFDRYG Trigger: ACCATACCGATCAAATTCCCAGGGACATTCTGTCAT...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCACTGCTAAGACGAAGTaGTGCCCAACTTGGCATGCC | + |
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Preference number: 2 (lower is better) Translates to: TSQDSQVHNNATSYKNLSTAKTK*CPTWHA Trigger: GGCATGCCAAGTTGGGCATCACTTCGTCTTAGCAGT...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATATGTCCCTGGGAATTTaGTCGGTATGGTTACTGCAG | + |
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Preference number: 2 (lower is better) Translates to: KSDELDCIPDVTKCRERNMSLGI*SVWLLQ Trigger: CTGCAGTAACCATACCGATCAAATTCCCAGGGACAT...ATTTCTTTCCCTGCACTTTGTTACATCTGGGATACAGTCTAACTCATCTGACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | AAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATGTTCGCCACCTTTCAGTGCTaGGCAGTTCACAAAAACCAC | + |
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Preference number: 2 (lower is better) Translates to: KWNMYSKTLAYPSSSEMFATFQC*AVHKNH Trigger: GTGGTTTTTGTGAACTGCTCAGCACTGAAAGGTGGC...GAACATTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| 3UTR-3UTR CCA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGGACTATAACCAATGCTaGAGTACACAAGGAAACAAA | + |
|
Preference number: 2 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLDYNQC*STQGNK Trigger: TTTGTTTCCTTGTGTACTCCAGCATTGGTTATAGTC...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCTCAAACTGCAGTAAGGTCGTaGGAGGAAGTGCCTTTGCTC | + |
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Preference number: 2 (lower is better) Translates to: MVMLGYLISIMAAFTFSQTAVRS*EEVPLL Trigger: GAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGT...TTGAGAAAATGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR CAA 90 bp | TTGGTTACAGACCTCTTCAGGTATAAAGCGAGTTCATATGTTTTCTaGTTAATTGTGCCTGCGTGGACACCTTCCTTTCCCATGACTATA | + |
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Preference number: 2 (lower is better) Translates to: LVTDLFRYKASSYVF*LIVPAWTPSFPMTI Trigger: TATAGTCATGGGAAAGGAAGGTGTCCACGCAGGCACAATTAACAAGAAAACATATGAACTCGCTTTATACCTGAAGAGGTCTGTAACCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCCTTGTTAATTGTGCCTaGGTGGACACCTTCCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: TSQDSQVHNNATSYKNLSLVNCA*VDTFLS Trigger: GGAAAGGAAGGTGTCCACGCAGGCACAATTAACAAG...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATGACTATAACCAATGCTaGAGTACACAAGGAAACAAA | + |
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Preference number: 2 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYDYNQC*STQGNK Trigger: TTTGTTTCCTTGTGTACTCCAGCATTGGTTATAGTC...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCCTACACAGAAGAGAATaGAAGCAGACCAAACACCTC | + |
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Preference number: 2 (lower is better) Translates to: PDGYVGIPNIHNGSLYIFLHRRE*KQTKHL Trigger: GAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAG...GAAAATGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCATTGTGCTGCAATTATaGTGCCAGATAAAGGTTGGT | + |
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Preference number: 2 (lower is better) Translates to: PDGYVGIPNIHNGSLYIFIVLQL*CQIKVG Trigger: ACCAACCTTTATCTGGCATCATAATTGCAGCACAAT...GAAAATGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | TCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAAACAAAGATAACTAAGTaGCTGGCACAGACTAACAAC | + |
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Preference number: 2 (lower is better) Translates to: SANGTCTLKLWPIPLLQKTKITK*LAQTNN Trigger: GTTGTTAGTCTGTGCCAGTCACTTAGTTATCTTTGT...TTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| 3UTR-3UTR GCA 90 bp | AAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATCATGACTATAACCAATaGTGGAGTACACAAGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: KSDELDCIPDVTKCRERNHDYNQ*WSTQGN Trigger: GTTTCCTTGTGTACTCCAGCATTGGTTATAGTCATG...ATTTCTTTCCCTGCACTTTGTTACATCTGGGATACAGTCTAACTCATCTGACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CCA 90 bp | ATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCTCAACTACACAGAAGAGAATaGAAGCAGACCAAACACCTC | + |
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Preference number: 2 (lower is better) Translates to: MVMLGYLISIMAAFTFSQLHRRE*KQTKHL Trigger: GAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAG...TTGAGAAAATGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAAGTATTTCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTACCCTAGTTGTAATATaGCATGCAACTTTTAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: WKYFSKWNMYSKTLAYPSTLVVI*HATFKE Trigger: CTCCTTAAAAGTTGCATGTCATATTACAACTAGGGT...AGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGAAATACTTCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| 3UTR-3UTR GCA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCCATGACTATAACCAATaGTGGAGTACACAAGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: TSQDSQVHNNATSYKNLSHDYNQ*WSTQGN Trigger: GTTTCCTTGTGTACTCCAGCATTGGTTATAGTCATG...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | AAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATATAGTCTGTCCCAAGTaGAGTCACTGTATTAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: KSDELDCIPDVTKCRERNIVCPK*SHCIKK Trigger: CTTTTTAATACAGTGACTGCACTTGGGACAGACTAT...ATTTCTTTCCCTGCACTTTGTTACATCTGGGATACAGTCTAACTCATCTGACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR GCA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCTGTACACCGGCACCTTaGTTACTATTAACCTATTTT | + |
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Preference number: 2 (lower is better) Translates to: TSQDSQVHNNATSYKNLSCTPAP*LLLTYF Trigger: AAAATAGGTTAATAGTAAGCAAGGTGCCGGTGTACA...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CAA 90 bp | GAGAAAGGTGTGACGTACAGAGGCATGCACTTTTTCCTCCCAACCATGCGCTACGAAGTGATGCCCAACTaGGCATGCCCCCTTCCCCCA | + |
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Preference number: 3 (lower is better) Translates to: EKGVTYRGMHFFLPTMRYEVMPN*ACPLPP Trigger: TGGGGGAAGGGGGCATGCCAAGTTGGGCATCACTTC...GTAGCGCATGGTTGGGAGGAAAAAGTGCATGCCTCTGTACGTCACACCTTTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR CCA 72 bp | GGGAATTTGATCGGTATGGTTACTGCAGTAAGGTCGTaGGAGGAAGTGCCTTTGCTCTCCAAGCTGCACGCT | + |
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Preference number: 3 (lower is better) Translates to: GNLIGMVTAVRS*EEVPLLSKLHA Trigger: AGCGTGCAGCTTGGAGAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGTAACCATACCGATCAAATTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CAA 90 bp | TTAAATAAACCAGGCACTACACAGAAGAGAATGGAAGCAGACCAAACACCTCGTGAAGTGATGCCCAACTaGGCATGCCCCCTTCCCCCA | + |
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Preference number: 3 (lower is better) Translates to: LNKPGTTQKRMEADQTPREVMPN*ACPLPP Trigger: TGGGGGAAGGGGGCATGCCAAGTTGGGCATCACTTC...ACGAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAGTGCCTGGTTTATTTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR GCA 72 bp | ACAGAATGTCCCTGGGAATTTGATCGGTATGGTTACTaGAGTAAGGTCGTGGGAGGAAGTGCCTTTGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: TECPWEFDRYGY*SKVVGGSAFAL Trigger: GAGAGCAAAGGCACTTCCTCCCACGACCTTACTGCAGTAACCATACCGATCAAATTCCCAGGGACATTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 72 bp | TTAGTAATCAGTAATCCACTAACTGCTAAGACGAAGTaGTGCCCAACTTGGCATGCCCCCTTCCCCCAGTTT | + |
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Preference number: 3 (lower is better) Translates to: LVISNPLTAKTK*CPTWHAPFPQF Trigger: AAACTGGGGGAAGGGGGCATGCCAAGTTGGGCATCACTTCGTCTTAGCAGTTAGTGGATTACTGATTACTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 72 bp | TCAAGAGCACAGCTGGTGTGCAAGAAAAGACAGGTCTaGGCTACTGCAATGACAGAATGTCCCTGGGAATTT | + |
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Preference number: 3 (lower is better) Translates to: SRAQLVCKKRQV*ATAMTECPWEF Trigger: AAATTCCCAGGGACATTCTGTCATTGCAGTAGCTCAGACCTGTCTTTTCTTGCACACCAGCTGTGCTCTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCAATGTCCCTGGGAATTaGATCGGTATGGTTACTGCA | + |
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Preference number: 3 (lower is better) Translates to: LDTLQMVMLGYLISIMAANVPGN*IGMVTA Trigger: TGCAGTAACCATACCGATCAAATTCCCAGGGACATT...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 72 bp | TGGTGTGCAAGAAAAGACAGGTCTGAGCTACTGCAATaGCAGAATGTCCCTGGGAATTTGATCGGTATGGTT | + |
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Preference number: 3 (lower is better) Translates to: WCARKDRSELLQ*QNVPGNLIGMV Trigger: AACCATACCGATCAAATTCCCAGGGACATTCTGTCATTGCAGTAGCTCAGACCTGTCTTTTCTTGCACACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR TCA 72 bp | CAACCATCTATCCCACAGCATCGTAACGCGTTGGACTaGGGCACCTTTTCATTTTTAGGTTTACCAAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QPSIPQHRNALD*GTFSFLGLPKL Trigger: CAGCTTTGGTAAACCTAAAAATGAAAAGGTGCCTCAGTCCAACGCGTTACGATGCTGTGGGATAGATGGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| 3UTR TCA 72 bp | AGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTaGGCAGTTCACAAAAACCACCTTAATAGCCATTAT | + |
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Preference number: 3 (lower is better) Translates to: SRQAESSATFQC*AVHKNHLNSHY Trigger: ATAATGGCTATTAAGGTGGTTTTTGTGAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| 3UTR GCA 72 bp | CTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATaGAAATCATTATTGTGCTGCAATTATGATGCCAGA | + |
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Preference number: 3 (lower is better) Translates to: LGMPPSPSFKIS*KSLLCCNYDAR Trigger: TCTGGCATCATAATTGCAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| 3UTR-3UTR CAA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATAGTTCATATGTTTTCTaGTTAATTGTGCCTGCGTGG | + |
|
Preference number: 3 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYSSYVF*LIVPAW Trigger: CCACGCAGGCACAATTAACAAGAAAACATATGAACT...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| 3UTR-3UTR CAA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATTCATGCAAATCATTATaGTGCTGCAATTATGATGCC | + |
|
Preference number: 3 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYSCKSL*CCNYDA Trigger: GGCATCATAATTGCAGCACAATAATGATTTGCATGA...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| 3UTR-3UTR CAA 90 bp | AAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATAGTTCATATGTTTTCTaGTTAATTGTGCCTGCGTGG | + |
|
Preference number: 3 (lower is better) Translates to: KSDELDCIPDVTKCRERNSSYVF*LIVPAW Trigger: CCACGCAGGCACAATTAACAAGAAAACATATGAACT...ATTTCTTTCCCTGCACTTTGTTACATCTGGGATACAGTCTAACTCATCTGACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| 3UTR TCA 72 bp | CAAGATATCATGCAAATCATTATTGTGCTGCAATTATaGTGCCAGATAAAGGTTGGTTACAGACCTCTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: QDIMQIIIVLQL*CQIKVGYRPLQ Trigger: CTGAAGAGGTCTGTAACCAACCTTTATCTGGCATCATAATTGCAGCACAATAATGATTTGCATGATATCTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | CACTCTAAAGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTGAGCAGTTCACTGGCGTGATGCTCTaGAAGACGCCCCCGGCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSKVDRLKAVPPFSAEQFTGVML*KTPPAV Trigger: CACGGCCGGGGGCGTCTTCCAGAGCATCACGCCAGT...GAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACTTTAGAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR TCA 90 bp | GAGAAAGGTGTGACGTACAGAGGCATGCACTTTTTCCTCCCAACCATGCGCTACGTTGGCTCCCCACCTTaGCTCTTTGTCCGGATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: EKGVTYRGMHFFLPTMRYVGSPP*LFVRMS Trigger: GGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAAC...GTAGCGCATGGTTGGGAGGAAAAAGTGCATGCCTCTGTACGTCACACCTTTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGACTGGCGTGATGCTCTaGAAGACGCCCCCGGCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLTGVML*KTPPAV Trigger: CACGGCCGGGGGCGTCTTCCAGAGCATCACGCCAGT...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| CDS-3UTR GCA 90 bp | TTAAATAAACCAGGCACTACACAGAAGAGAATGGAAGCAGACCAAACACCTCGTGCCCCCGGCCGTGGCTaGCCAGACGTATTTGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: LNKPGTTQKRMEADQTPRAPGRG*PDVFGV Trigger: GACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGC...ACGAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAGTGCCTGGTTTATTTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| CDS-3UTR CCA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGACAATGGCGGCCTCCTaGCAGCAGCCATCGCACATC | + |
|
Preference number: 4 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLTMAAS*QQPSHI Trigger: GATGTGCGATGGCTGCTGCCAGGAGGCCGCCATTGT...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| CDS-3UTR CCA 90 bp | TTAAATAAACCAGGCACTACACAGAAGAGAATGGAAGCAGACCAAACACCTCGTAGACGCCCCCGGCCGTaGCTGCCCAGACGTATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LNKPGTTQKRMEADQTPRRRPRP*LPRRIW Trigger: CCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCT...ACGAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTGTAGTGCCTGGTTTATTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| CDS-3UTR TCA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATGTTGGCTCCCCACCTTaGCTCTTTGTCCGGATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: PNLACPLPPVSRYHANHYVGSPP*LFVRMS Trigger: GGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAAC...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | TGTGCTGCAATTATGATGCCAGATAAAGGTTGGTTACAGACCTCTTCAGGTATACGCAGTAGCCGACAATaGCGGCCTCCTGGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: CAAIMMPDKGWLQTSSGIRSSRQ*RPPGSS Trigger: GCTGCTGCCAGGAGGCCGCCATTGTCGGCTACTGCG...TATACCTGAAGAGGTCTGTAACCAACCTTTATCTGGCATCATAATTGCAGCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| 3UTR CAA 72 bp | CACAGAAGAGAATGGAAGCAGACCAAACACCTCGTGTaGGTAGGGAGGGGTGAGAAAGGTGTGACGTACAGA | + |
|
Preference number: 4 (lower is better) Translates to: HRREWKQTKHLV*VGRGEKGVTYR Trigger: TCTGTACGTCACACCTTTCTCACCCCTCCCTACCAACACGAGGTGTTTGGTCTGCTTCCATTCTCTTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR GCA 90 bp | AAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATGTTCGCCCCCGGCCGTGGCTaGCCAGACGTATTTGGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: KWNMYSKTLAYPSSSEMFAPGRG*PDVFGV Trigger: GACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGC...GAACATTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CCA 90 bp | TCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAAAGACGCCCCCGGCCGTaGCTGCCCAGACGTATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SANGTCTLKLWPIPLLQKRRPRP*LPRRIW Trigger: CCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCT...TTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CCA 90 bp | AAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATGTTCCGCAGTAGCCGACAATaGCGGCCTCCTGGCAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KWNMYSKTLAYPSSSEMFRSSRQ*RPPGSS Trigger: GCTGCTGCCAGGAGGCCGCCATTGTCGGCTACTGCG...GAACATTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CCA 90 bp | TCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAAACAATGGCGGCCTCCTaGCAGCAGCCATCGCACATC | + |
|
Preference number: 4 (lower is better) Translates to: SANGTCTLKLWPIPLLQKTMAAS*QQPSHI Trigger: GATGTGCGATGGCTGCTGCCAGGAGGCCGCCATTGT...TTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CCA 90 bp | ATTGTGCCTGCGTGGACACCTTCCTTTCCCATGACTATAACCAATGCTGGAGTAAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTT | + |
|
Preference number: 4 (lower is better) Translates to: IVPAWTPSFPMTITNAGVSNVVC*LPTLTL Trigger: AAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCT...TACTCCAGCATTGGTTATAGTCATGGGAAAGGAAGGTGTCCACGCAGGCACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | TCTAAAGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTGAGCAGTTCACAAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTT | + |
|
Preference number: 4 (lower is better) Translates to: SKVDRLKAVPPFSAEQFTSNVVC*LPTLTL Trigger: AAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCT...TGTGAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACTTTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LDTLQMVMLGYLISIMAASNVVC*LPTLTL Trigger: AAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCT...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGTTCAATCCGCCTCCATaGACCCCTTCTTTTCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLFNPPP*TPSFPI Trigger: AATGGGAAAAGAAGGGGTCCATGGAGGCGGATTGAA...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTCAATCCGCCTCCATaGACCCCTTCTTTTCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: LDTLQMVMLGYLISIMAAFNPPP*TPSFPI Trigger: AATGGGAAAAGAAGGGGTCCATGGAGGCGGATTGAA...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR GCA 90 bp | ATTGTGCCTGCGTGGACACCTTCCTTTCCCATGACTATAACCAATGCTGGAGTACACAGAACACTTCTTTaGTCCAAGAGTCAAACCGTT | + |
|
Preference number: 4 (lower is better) Translates to: IVPAWTPSFPMTITNAGVHRTLL*SKSQTV Trigger: AACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTG...TACTCCAGCATTGGTTATAGTCATGGGAAAGGAAGGTGTCCACGCAGGCACAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR GCA 90 bp | TCTAAAGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTGAGCAGTTCACACACAGAACACTTCTTTaGTCCAAGAGTCAAACCGTT | + |
|
Preference number: 4 (lower is better) Translates to: SKVDRLKAVPPFSAEQFTHRTLL*SKSQTV Trigger: AACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTG...TGTGAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACTTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR GCA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTCCGGATGTCCATTGTaGAGTCACCATCAACGTATA | + |
|
Preference number: 4 (lower is better) Translates to: PNLACPLPPVSRYHANHYSGCPL*SHHQRI Trigger: TATACGTTGATGGTGACTGCACAATGGACATCCGGA...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CCA 90 bp | AAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATCTGCCCAGACGTATTTaGCGTCGCAGTAGCCGACAA | + |
|
Preference number: 4 (lower is better) Translates to: KSDELDCIPDVTKCRERNLPRRI*RRSSRQ Trigger: TTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAG...ATTTCTTTCCCTGCACTTTGTTACATCTGGGATACAGTCTAACTCATCTGACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066882.10 |
||
| CDS-3UTR GCA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCCACAGAACACTTCTTTaGTCCAAGAGTCAAACCGTT | + |
|
Preference number: 4 (lower is better) Translates to: LDTLQMVMLGYLISIMAAHRTLL*SKSQTV Trigger: AACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTG...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR GCA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATTCCGGATGTCCATTGTaGAGTCACCATCAACGTATA | + |
|
Preference number: 4 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYSGCPL*SHHQRI Trigger: TATACGTTGATGGTGACTGCACAATGGACATCCGGA...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| 3UTR CAA 72 bp | GACCTCTTCAGGTATAAAGCGAGTTCATATGTTTTCTaGTTAATTGTGCCTGCGTGGACACCTTCCTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: DLFRYKASSYVF*LIVPAWTPSFP Trigger: GGGAAAGGAAGGTGTCCACGCAGGCACAATTAACAAGAAAACATATGAACTCGCTTTATACCTGAAGAGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR TCA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATCGTATAGGCTATCTCTaGTCACAGAACACTTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYRIGYL*SQNTSL Trigger: CAAAGAAGTGTTCTGTGATCAGAGATAGCCTATACG...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR TCA 90 bp | TGTGCTGCAATTATGATGCCAGATAAAGGTTGGTTACAGACCTCTTCAGGTATACGTATAGGCTATCTCTaGTCACAGAACACTTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: CAAIMMPDKGWLQTSSGIRIGYL*SQNTSL Trigger: CAAAGAAGTGTTCTGTGATCAGAGATAGCCTATACG...TATACCTGAAGAGGTCTGTAACCAACCTTTATCTGGCATCATAATTGCAGCACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR GCA 90 bp | TGGAAGTATTTCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCCGGATGTCCATTGTaGAGTCACCATCAACGTATA | + |
|
Preference number: 4 (lower is better) Translates to: WKYFSKWNMYSKTLAYPSSGCPL*SHHQRI Trigger: TATACGTTGATGGTGACTGCACAATGGACATCCGGA...AGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGAAATACTTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR TCA 90 bp | TGGAAGTATTTCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTCGTATAGGCTATCTCTaGTCACAGAACACTTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: WKYFSKWNMYSKTLAYPSRIGYL*SQNTSL Trigger: CAAAGAAGTGTTCTGTGATCAGAGATAGCCTATACG...AGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGAAATACTTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| 3UTR CAA 72 bp | ATGAAAAATAAACTGGACACACTCCAGATGGTTATGTaGGGATACCTAATATCCATAATGGCAGCCTTTACA | + |
|
Preference number: 4 (lower is better) Translates to: MKNKLDTLQMVM*GYLISIMAAFT Trigger: TGTAAAGGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAGTTTATTTTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS CCA 90 bp | CGGCCGTGGCTGCCCAGACGTATTTGGCGTCGCAGTAGCCGACAATaGCGGCCTCCTGGCAGCAGCCATCGCACATCAGGTTATCCACGT | + |
|
Preference number: 5 (lower is better) Translates to: RPWLPRRIWRRSSRQ*RPPGSSHRTSGYPR Trigger: ACGTGGATAACCTGATGTGCGATGGCTGCTGCCAGGAGGCCGCCATTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAGCCACGGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000120289.3 |
||
| CDS GCA 90 bp | TATTTCTACTGGCGTGATGCTCTGGAAGACGCCCCCGGCCGTGGCTaGCCAGACGTATTTGGCGTCGCAGTAGCCGACAATGGCGGCCTC | + |
|
Preference number: 5 (lower is better) Translates to: YFYWRDALEDAPGRG*PDVFGVAVADNGGL Trigger: GAGGCCGCCATTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCTTCCAGAGCATCACGCCAGTAGAAATA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000120289.3 |
||
| CDS CCA 90 bp | AAAGACCAAGACTCTCCCGGCCCTGCCAACAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTTTGTCCGGATGTCCATTGTGCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: KDQDSPGPANSNVVC*LPTLTLCPDVHCAV Trigger: GACTGCACAATGGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAGGGCCGGGAGAGTCTTGGTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 ENSMUST00000122210.2 |
||
| CDS-3UTR CAA 90 bp | CACTCTAAAGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTGAGCAGTTCTGTTGGCTCCCCACCTaGACTCTTTGTCCGGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: HSKVDRLKAVPPFSAEQFCWLPT*TLCPDV Trigger: GACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACA...GAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACTTTAGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CAA 90 bp | CACTCTAAAGTAGACAGGCTGAAAGCAGTGCCACCTTTCAGTGCTGAGCAGTTCCTGCCAACAGCAACGTaGTATGTTGGCTCCCCACCT | + |
|
Preference number: 5 (lower is better) Translates to: HSKVDRLKAVPPFSAEQFLPTAT*YVGSPP Trigger: AGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAG...GAACTGCTCAGCACTGAAAGGTGGCACTGCTTTCAGCCTGTCTACTTTAGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
||
| CDS-3UTR CAA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATCCCCACCTTGACTCTTaGTCCGGATGTCCATTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: PNLACPLPPVSRYHANHYPHLDS*SGCPLC Trigger: GCACAATGGACATCCGGACAAAGAGTCAAGGTGGGG...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTTGGCTCCCCACCTaGACTCTTTGTCCGGATGTC | + |
|
Preference number: 5 (lower is better) Translates to: PNLACPLPPVSRYHANHYCWLPT*TLCPDV Trigger: GACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACA...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATCTGCCAACAGCAACGTaGTATGTTGGCTCCCCACCT | + |
|
Preference number: 5 (lower is better) Translates to: PNLACPLPPVSRYHANHYLPTAT*YVGSPP Trigger: AGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAG...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCCAGCAACGTTGTATGTaGGCTCCCCACCTTGACTCT | + |
|
Preference number: 5 (lower is better) Translates to: LDTLQMVMLGYLISIMAAQQRCM*APHLDS Trigger: AGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTG...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGCAGCAACGTTGTATGTaGGCTCCCCACCTTGACTCT | + |
|
Preference number: 5 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLQQRCM*APHLDS Trigger: AGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTG...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | GACACTGATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATCTGCCAACAGCAACGTaGTATGTTGGCTCCCCACCT | + |
|
Preference number: 5 (lower is better) Translates to: DTDRVRDCTPAPCLLLTYLPTAT*YVGSPP Trigger: AGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAG...ATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATCAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
||
| CDS-3UTR CAA 90 bp | CTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCCCAAGAGTCAAACCGTaGGTAAAGAAACCTTCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: LDTLQMVMLGYLISIMAAPRVKP*VKKPSR Trigger: CCGGGAAGGTTTCTTTACCAACGGTTTGACTCTTGG...GGCTGCCATTATGGATATTAGGTATCCCAACATAACCATCTGGAGTGTGTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGTTGTCCGGATGTCCATaGTGCAGTCACCATCAACGT | + |
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Preference number: 5 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLLSGCP*CSHHQR Trigger: ACGTTGATGGTGACTGCACAATGGACATCCGGACAA...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | TGTGCTGCAATTATGATGCCAGATAAAGGTTGGTTACAGACCTCTTCAGGTATACCCCACCTTGACTCTTaGTCCGGATGTCCATTGTGC | + |
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Preference number: 5 (lower is better) Translates to: CAAIMMPDKGWLQTSSGIPHLDS*SGCPLC Trigger: GCACAATGGACATCCGGACAAAGAGTCAAGGTGGGG...TATACCTGAAGAGGTCTGTAACCAACCTTTATCTGGCATCATAATTGCAGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | GATCGAGTTAGAGACTGTACACCGGCACCTTGCTTACTATTAACCTATTTTAGTTGTTGGCTCCCCACCTaGACTCTTTGTCCGGATGTC | + |
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Preference number: 5 (lower is better) Translates to: DRVRDCTPAPCLLLTYFSCWLPT*TLCPDV Trigger: GACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACA...ACTAAAATAGGTTAATAGTAAGCAAGGTGCCGGTGTACAGTCTCTAACTCGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | GAGAAAGGTGTGACGTACAGAGGCATGCACTTTTTCCTCCCAACCATGCGCTACAGTCTCTCAAGTATTTaGCCATTGAGTATGCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: EKGVTYRGMHFFLPTMRYSLSSI*PLSMPS Trigger: AGAAGGCATACTCAATGGCAAAATACTTGAGAGACT...GTAGCGCATGGTTGGGAGGAAAAAGTGCATGCCTCTGTACGTCACACCTTTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | CCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTCACAGAACACTTCTTaGCTCCAAGAGTCAAACCGT | + |
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Preference number: 5 (lower is better) Translates to: PNLACPLPPVSRYHANHYSQNTS*LQESNR Trigger: ACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTGA...ATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCAAGTTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | TGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGTCACAGAACACTTCTTaGCTCCAAGAGTCAAACCGT | + |
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Preference number: 5 (lower is better) Translates to: WHAPFPQFQDIMQIIIVLSQNTS*LQESNR Trigger: ACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTGA...CAGCACAATAATGATTTGCATGATATCTTGAAACTGGGGGAAGGGGGCATGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | TGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATGTTCCTGCAGCAACGTTGTATGTaGGCTCCCCACCTTGACTCT | + |
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Preference number: 5 (lower is better) Translates to: WNMYSKTLAYPSSSEMFLQQRCM*APHLDS Trigger: AGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTG...CAGGAACATTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| CDS-3UTR CAA 90 bp | TGTGCTGCAATTATGATGCCAGATAAAGGTTGGTTACAGACCTCTTCAGGTATATTGTCCGGATGTCCATaGTGCAGTCACCATCAACGT | + |
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Preference number: 5 (lower is better) Translates to: CAAIMMPDKGWLQTSSGILSGCP*CSHHQR Trigger: ACGTTGATGGTGACTGCACAATGGACATCCGGACAA...TATACCTGAAGAGGTCTGTAACCAACCTTTATCTGGCATCATAATTGCAGCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | AAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATGTTCCCCCACCTTGACTCTTaGTCCGGATGTCCATTGTGC | + |
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Preference number: 5 (lower is better) Translates to: KWNMYSKTLAYPSSSEMFPHLDS*SGCPLC Trigger: GCACAATGGACATCCGGACAAAGAGTCAAGGTGGGG...GAACATTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| CDS-3UTR CAA 90 bp | TGGAAGTATTTCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTCCAAGAGTCAAACCGTaGGTAAAGAAACCTTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: WKYFSKWNMYSKTLAYPSPRVKP*VKKPSR Trigger: CCGGGAAGGTTTCTTTACCAACGGTTTGACTCTTGG...AGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGAAATACTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| CDS-3UTR CAA 90 bp | TCAGCAAATGGAACATGTACTCTAAAACTTTGGCCTATCCCTCTTCTTCAGAAATTGTCCGGATGTCCATaGTGCAGTCACCATCAACGT | + |
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Preference number: 5 (lower is better) Translates to: SANGTCTLKLWPIPLLQKLSGCP*CSHHQR Trigger: ACGTTGATGGTGACTGCACAATGGACATCCGGACAA...TTTCTGAAGAAGAGGGATAGGCCAAAGTTTTAGAGTACATGTTCCATTTGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| CDS-3UTR CAA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCCCAAGAGTCAAACCGTaGGTAAAGAAACCTTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TSQDSQVHNNATSYKNLSPRVKP*VKKPSR Trigger: CCGGGAAGGTTTCTTTACCAACGGTTTGACTCTTGG...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS-3UTR CAA 90 bp | ACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCAGTCTCTCAAGTATTTaGCCATTGAGTATGCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: TSQDSQVHNNATSYKNLSSLSSI*PLSMPS Trigger: AGAAGGCATACTCAATGGCAAAATACTTGAGAGACT...GCTTAGGTTTTTATATGAAGTTGCATTATTGTGGACTTGGCTGTCTTGTGATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 |
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| CDS CCA 72 bp | GGAAGACGCCCCCGGCCGTGGCTGCCCAGACGTATTTaGCGTCGCAGTAGCCGACAATGGCGGCCTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: GRRPRPWLPRRI*RRSSRQWRPPG Trigger: GCCAGGAGGCCGCCATTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCTTCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000120289.3 |
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| CDS GCA 72 bp | TGGCGTGATGCTCTGGAAGACGCCCCCGGCCGTGGCTaGCCAGACGTATTTGGCGTCGCAGTAGCCGACAAT | + |
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Preference number: 6 (lower is better) Translates to: WRDALEDAPGRG*PDVFGVAVADN Trigger: ATTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAGCCACGGCCGGGGGCGTCTTCCAGAGCATCACGCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000120289.3 |
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| CDS CCA 72 bp | CTGCCCAGACGTATTTGGCGTCGCAGTAGCCGACAATaGCGGCCTCCTGGCAGCAGCCATCGCACATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: LPRRIWRRSSRQ*RPPGSSHRTSG Trigger: ACCTGATGTGCGATGGCTGCTGCCAGGAGGCCGCCATTGTCGGCTACTGCGACGCCAAATACGTCTGGGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066882.10 ENSMUST00000120289.3 |
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| CDS CCA 72 bp | GACTCTCCCGGCCCTGCCAACAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTTTGTCCGGATGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: DSPGPANSNVVC*LPTLTLCPDVH Trigger: ATGGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAGGGCCGGGAGAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 ENSMUST00000122210.2 |
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| CDS CCA 72 bp | ACCTCTCCCGGCCCTGCCAACAGCAACGTTGTATGTTaGCTCCCCACCTTGACTCTTTGTCCGGATGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: TSPGPANSNVVC*LPTLTLCPDVH Trigger: ATGGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAGGGCCGGGAGAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120289.3 |
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| CDS CAA 90 bp | CAAAGACCAAGACTCTCCCGGCCCTGCCAACAGCAACGTTGTATGTaGGCTCCCCACCTTGACTCTTTGTCCGGATGTCCATTGTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: QRPRLSRPCQQQRCM*APHLDSLSGCPLCS Trigger: ACTGCACAATGGACATCCGGACAAAGAGTCAAGGTGGGGAGCCAACATACAACGTTGCTGTTGGCAGGGCCGGGAGAGTCTTGGTCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 ENSMUST00000122210.2 |
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| CDS CAA 72 bp | ATCACAGAACACTTCTTTGCTCCAAGAGTCAAACCGTaGGTAAAGAAACCTTCCCGGTCTTTTCCTACAATC | + |
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Preference number: 6 (lower is better) Translates to: ITEHFFAPRVKP*VKKPSRSFPTI Trigger: GATTGTAGGAAAAGACCGGGAAGGTTTCTTTACCAACGGTTTGACTCTTGGAGCAAAGAAGTGTTCTGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000066882.10 ENSMUST00000119344.8 ENSMUST00000120289.3 ENSMUST00000122210.2 |
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