RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PFKM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033065

Ensembl transcript IDs: ENSMUST00000051226.8, ENSMUST00000163507.8, ENSMUST00000229280.2, ENSMUST00000229344.2, ENSMUST00000230445.2

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTAGGAGAGTCACTCACCGCCCCTCCTCCAGCTCCTGGCCACAGCTaGTCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGA +
Preference number: 1 (lower is better)
Translates to: LGESLTAPPPAPGHS*SWLQAWSTGKPRRG
Trigger: TCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGGGCGGTGAGTGACTCTCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR-3UTR CCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAACCCTCCTCCAGCTCCTaGCCACAGCTGATCCTGGTT +
Preference number: 2 (lower is better)
Translates to: GQLAFISVVTLHHCGASKPSSSS*PQLILV
Trigger: AACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCCCTCCTCCAGCTCCTaGCCACAGCTGATCCTGGTT +
Preference number: 2 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHPSSSS*PQLILV
Trigger: AACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR-3UTR CCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAACCGATGAAGCTGGAGTaGAAGGGAGGAAGGACAGCC +
Preference number: 2 (lower is better)
Translates to: GQLAFISVVTLHHCGASKPMKLE*KGGRTA
Trigger: GGCTGTCCTTCCTCCCTTCCACTCCAGCTTCATCGG...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR-3UTR TCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGCTGGGCTAGAACACTaGGAAGCCATGATCTACCAG +
Preference number: 2 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKAGLEH*EAMIYQ
Trigger: CTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR-3UTR GCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACACAGCTGATCCTGGTTaGAGGCATGGAGTACAGGGA +
Preference number: 2 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHTADPG*RHGVQG
Trigger: TCCCTGTACTCCATGCCTGCAACCAGGATCAGCTGT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR CCA 72 bp CCTAGGAGAGTCACTCACCGCCCCTCCTCCAGCTCCTaGCCACAGCTGATCCTGGTTGCAGGCATGGAGTAC +
Preference number: 3 (lower is better)
Translates to: PRRVTHRPSSSS*PQLILVAGMEY
Trigger: GTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGGGCGGTGAGTGACTCTCCTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR GCA 72 bp CCCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTaGAGGCATGGAGTACAGGGAAACCTAGAAGGGGAG +
Preference number: 3 (lower is better)
Translates to: PLLQLLATADPG*RHGVQGNLEGE
Trigger: CTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
3UTR TCA 72 bp AAATCTAGCCGTAGCACTAGAGAGACCCAGCCTGTGTaGCCGATGAAGCTGGAGTGGAAGGGAGGAAGGACA +
Preference number: 3 (lower is better)
Translates to: KSSRSTRETQPV*PMKLEWKGGRT
Trigger: TGTCCTTCCTCCCTTCCACTCCAGCTTCATCGGTCACACAGGCTGGGTCTCTCTAGTGCTACGGCTAGATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCCAGCGGCCAGCCCTaGCATGGTGGCCAGGTAGCC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPSGQP*HGGQVA
Trigger: GGCTACCTGGCCACCATGGCAGGGCTGGCCGCTGGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCGCTTCACCAGGTTGTaGGCGGCCCGGAGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRRFTRL*AARSRP
Trigger: AGGACGACTCCGGGCCGCCCACAACCTGGTGAAGCG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCAAGTGTCAGCCCCAGTaGGGCTGCCATCGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSKCQPQ*GCHRLR
Trigger: TCGGAGGCGATGGCAGCCTCACTGGGGCTGACACTT...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCCCAGCGGCCAGCCCTaGCATGGTGGCCAGGTAGCC +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEPSGQP*HGGQVA
Trigger: GGCTACCTGGCCACCATGGCAGGGCTGGCCGCTGGG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGCTCACCACACAGGCTaGGGTGTCTGGGGTCCCCTC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGAHHTG*GVWGPL
Trigger: GAGGGGACCCCAGACACCCCAGCCTGTGTGGTGAGC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCAGACGCGGGCGCCCGTaGAGATACCAACTCGGACCA +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGRRGRP*RYQLGP
Trigger: TGGTCCGAGTTGGTATCTTCACGGGCGCCCGCGTCT...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCTGCACGCACTCCATaGGGGGCAAACGCACAGCCT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPARTP*GANAQP
Trigger: AGGCTGTGCGTTTGCCCCTCATGGAGTGCGTGCAGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGAACAGCGGCATTCATaGCAGCAGCTGGGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGEQRHS*QQLGPP
Trigger: TGGGGGCCCCAGCTGCTGGCATGAATGCCGCTGTTC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCGTTGGGCTTCCACCCTaGTGCATGTGGCCAAGCACG +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSVGLPP*CMWPST
Trigger: CGTGCTTGGCCACATGCAGCAGGGTGGAAGCCCAAC...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGAGACGCGGGCGCCCGTaGAGATACCAACTCGGACCA +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELRRGRP*RYQLGP
Trigger: TGGTCCGAGTTGGTATCTTCACGGGCGCCCGCGTCT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCAAGTCGCTCCACTCTaGACGGAAAGTGTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSQVAPL*TESVSP
Trigger: GGGGCTGACACTTTCCGTTCAGAGTGGAGCGACTTG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCACAGGACAGAGAGGTaGCAAGGGCCAGGTATCCAC +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRHRTER*QGPGIH
Trigger: GTGGATACCTGGCCCTTGTCACCTCTCTGTCCTGTG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCCTCCCAGTTGTTCATaGAGCTCCGGCCTCTCAGCT +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSPPSCS*SSGLSA
Trigger: AGCTGAGAGGCCGGAGCTTCATGAACAACTGGGAGG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCCTCCCAGTTGTTCATaGAGCTCCGGCCTCTCAGCT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRPPSCS*SSGLSA
Trigger: AGCTGAGAGGCCGGAGCTTCATGAACAACTGGGAGG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCTTCCACACCCATCCTaGTGCCCAGGATCCGGTCAA +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRLPHPS*CPGSGQ
Trigger: TTGACCGGATCCTGGGCAGCAGGATGGGTGTGGAAG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGGCAAACGCACAGCCTaGTTACCAGAGAGGCTCACC +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRGKRTA*LPERLT
Trigger: GGTGAGCCTCTCTGGTAACCAGGCTGTGCGTTTGCC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCTGCTCCAGGTGGGCGTaGTCGGAGGTGTCCAGATCA +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGCSRWA*SEVSRS
Trigger: TGATCTGGACACCTCCGACCACGCCCACCTGGAGCA...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGAAATGTGCTCCAGGTaGGCGTGGTCGGAGGTGTCC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGEMCSR*AWSEVS
Trigger: GGACACCTCCGACCACGCCCACCTGGAGCACATTTC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCACAGGACAGAGAGGTaGCAAGGGCCAGGTATCCAC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGHRTER*QGPGIH
Trigger: GTGGATACCTGGCCCTTGTCACCTCTCTGTCCTGTG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCCCGATGCTGAAGTCTaGCCCAGGGACGTTATTGGA +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSPDAEV*PRDVIG
Trigger: TCCAATAACGTCCCTGGGTCAGACTTCAGCATCGGG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCTCCAGACCGTTTCCTTaGAATGTGCTCCAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSSRPFP*NVLQVG
Trigger: GCCCACCTGGAGCACATTTCAAGGAAACGGTCTGGA...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACACGGCGATGGCCTTaGCGATCCCCAGGGTTTTGG +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELTRRWP*RSPGFW
Trigger: CCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGTTGGGCTTCCACCCTaGTGCATGTGGCCAAGCACG +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELVGLPP*CMWPST
Trigger: CGTGCTTGGCCACATGCAGCAGGGTGGAAGCCCAAC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCGTTTCCTTGAAATGTaGTCCAGGTGGGCGTGGTCG +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSRFLEM*SRWAWS
Trigger: CGACCACGCCCACCTGGAGCACATTTCAAGGAAACG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCGTTTCCTTGAAATGTaGTCCAGGTGGGCGTGGTCG +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRRFLEM*SRWAWS
Trigger: CGACCACGCCCACCTGGAGCACATTTCAAGGAAACG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGGCTCACCACACAGGCTaGGGTGTCTGGGGTCCCCTC +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMAHHTG*GVWGPL
Trigger: GAGGGGACCCCAGACACCCCAGCCTGTGTGGTGAGC...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCAGCACCCGGTTGCCCTaGATAAGGCCAATCCTCACG +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGSTRLP*IRPILT
Trigger: CGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCT...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGTGCTCCAGGTGGGCGTaGTCGGAGGTGTCCAGATCA +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELCSRWA*SEVSRS
Trigger: TGATCTGGACACCTCCGACCACGCCCACCTGGAGCA...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCTCGGACCACAGCCCTaGCGGCAGCATTCATACCTT +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELLGPQP*RQHSYL
Trigger: AAGGTATGAATGCTGCCGTCAGGGCTGTGGTCCGAG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGAAGTGTCAGCCCCAGTaGGGCTGCCATCGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMKCQPQ*GCHRLR
Trigger: TCGGAGGCGATGGCAGCCTCACTGGGGCTGACACTT...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCAGCTCAGTTACTGGCTaGAAGACCAGGGCCCTCTTA +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSSSVTG*KTRALL
Trigger: TAAGAGGGCCCTGGTCTTTCAGCCAGTAACTGAGCT...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCTCCAGACCGTTTCCTTaGAATGTGCTCCAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGSRPFP*NVLQVG
Trigger: GCCCACCTGGAGCACATTTCAAGGAAACGGTCTGGA...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGCTCTCGGAAGTCCTTaGATCGGGCACTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRALGSP*IGHFQS
Trigger: TGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGCAGATGGTGTTCAGTaGTGTGTCAGCCCCGATGCT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGADGVQ*CVSPDA
Trigger: AGCATCGGGGCTGACACAGCACTGAACACCATCTGC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCGACGTTTGGTGCCTaGTGCAGACTGCTTGATTCG +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPTFGA*CRLLDS
Trigger: CGAATCAAGCAGTCTGCAGCAGGCACCAAACGTCGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCGTTTCCTTGAAATGTaGTCCAGGTGGGCGTGGTCG +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGRFLEM*SRWAWS
Trigger: CGACCACGCCCACCTGGAGCACATTTCAAGGAAACG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGCAGCATTCATACCTTaGGCATCTCCACCAGAGGTC +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRAAFIP*ASPPEV
Trigger: GACCTCTGGTGGAGATGCCCAAGGTATGAATGCTGC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCTTCAGCTCAGTTACTaGCTGAAAGACCAGGGCCCT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRLQLSY*LKDQGP
Trigger: AGGGCCCTGGTCTTTCAGCCAGTAACTGAGCTGAAG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCAAGTCGCTCCACTCTaGACGGAAAGTGTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEQVAPL*TESVSP
Trigger: GGGGCTGACACTTTCCGTTCAGAGTGGAGCGACTTG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGAAGTCATTGTCGATTaGGCCAACCAGGCCCACGAT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGEVIVD*ANQAHD
Trigger: ATCGTGGGCCTGGTTGGCTCAATCGACAATGACTTC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCATGTCCCAGAACAGTaGCCCGGGTGTCATATCCAA +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGHVPEQ*PGCHIQ
Trigger: TTGGATATGACACCCGGGTCACTGTTCTGGGACATG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCCTCCCAGTTGTTCATaGAGCTCCGGCCTCTCAGCT +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEPPSCS*SSGLSA
Trigger: AGCTGAGAGGCCGGAGCTTCATGAACAACTGGGAGG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGACACGGCGATGGCCTTaGCGATCCCCAGGGTTTTGG +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMTRRWP*RSPGFW
Trigger: CCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGT...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGCTCTCGGAAGTCCTTaGATCGGGCACTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGALGSP*IGHFQS
Trigger: TGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGGTCCCCTCCAAAAGTaGCATCACTGCTTCCACACC +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELGPLQK*HHCFHT
Trigger: GGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCACGTTTGGTGCCTGCTaGAGACTGCTTGATTCGGTC +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGTFGAC*RLLDSV
Trigger: GACCGAATCAAGCAGTCTGCAGCAGGCACCAAACGT...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCTCCTGCTATCAAAGATaGCCTTCCCCTCCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSSCYQR*PSPPQS
Trigger: ACTCTGAGGAGGGGAAGGGCATCTTTGATAGCAGGA...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCGATCCCCAGGGTTTTaGCTGCATGATGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRRSPGF*LHDALH
Trigger: ATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGGGCAAACGCACAGCCTaGTTACCAGAGAGGCTCACC +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEGKRTA*LPERLT
Trigger: GGTGAGCCTCTCTGGTAACCAGGCTGTGCGTTTGCC...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCACAAGTCGTGCAGATaGTGTTCAGTGCTGTGTCAG +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRHKSCR*CSVLCQ
Trigger: CTGACACAGCACTGAACACCATCTGCACGACTTGTG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGAAGTCATTGTCGATTaGGCCAACCAGGCCCACGAT +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELEVIVD*ANQAHD
Trigger: ATCGTGGGCCTGGTTGGCTCAATCGACAATGACTTC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCACAGGACAGAGAGGTaGCAAGGGCCAGGTATCCAC +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMHRTER*QGPGIH
Trigger: GTGGATACCTGGCCCTTGTCACCTCTCTGTCCTGTG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGTTCTTGATGTCTTCTaGGGTGATTGGCTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRVLDVF*GDWLPV
Trigger: AACGGGAAGCCAATCACCTCAGAAGACATCAAGAAC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCCCGATGCTGAAGTCTaGCCCAGGGACGTTATTGGA +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEPDAEV*PRDVIG
Trigger: TCCAATAACGTCCCTGGGTCAGACTTCAGCATCGGG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGGAGATCGCGAATGGTaGAGGGTTCCTCAAAAATGT +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRGDREW*RVPQKC
Trigger: ACATTTTTGAGGAACCCTTCACCATTCGCGATCTCC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGAGCTCAGTTACTGGCTaGAAGACCAGGGCCCTCTTA +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELSSVTG*KTRALL
Trigger: TAAGAGGGCCCTGGTCTTTCAGCCAGTAACTGAGCT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCCCCAGGGTTTTGGCTaGATGATGCTCTTCATGGGT +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELPQGFG*MMLFMG
Trigger: ACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGCTCTCGGAAGTCCTTaGATCGGGCACTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELALGSP*IGHFQS
Trigger: TGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCTTCCACACCCATCCTaGTGCCCAGGATCCGGTCAA +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMLPHPS*CPGSGQ
Trigger: TTGACCGGATCCTGGGCAGCAGGATGGGTGTGGAAG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCAAAAGTGCCATCACTaGTTCCACACCCATCCTGCT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGQKCHH*FHTHPA
Trigger: AGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACGTTTGGTGCCTGCTaGAGACTGCTTGATTCGGTC +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELTFGAC*RLLDSV
Trigger: GACCGAATCAAGCAGTCTGCAGCAGGCACCAAACGT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCGATCCCCAGGGTTTTaGCTGCATGATGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGRSPGF*LHDALH
Trigger: ATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGCAGCATTCATACCTTaGGCATCTCCACCAGAGGTC +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELAAFIP*ASPPEV
Trigger: GACCTCTGGTGGAGATGCCCAAGGTATGAATGCTGC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACTGGGGGTCTGACATaGGCTAGAAGCTTGTATACC +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELTGGLT*ARSLYT
Trigger: GGTATACAAGCTTCTAGCTCATGTCAGACCCCCAGT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGAGCTCAGTTACTGGCTaGAAGACCAGGGCCCTCTTA +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCESSVTG*KTRALL
Trigger: TAAGAGGGCCCTGGTCTTTCAGCCAGTAACTGAGCT...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCCCCAGGGTTTTGGCTaGATGATGCTCTTCATGGGT +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEPQGFG*MMLFMG
Trigger: ACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGGCAGATGGTGTTCAGTaGTGTGTCAGCCCCGATGCT +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMADGVQ*CVSPDA
Trigger: AGCATCGGGGCTGACACAGCACTGAACACCATCTGC...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCCGACGTTTGGTGCCTaGTGCAGACTGCTTGATTCG +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMPTFGA*CRLLDS
Trigger: CGAATCAAGCAGTCTGCAGCAGGCACCAAACGTCGG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAACCCAGCGGCCAGCCCTaGCATGGTGGCCAGGTAGCC +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKPSGQP*HGGQVA
Trigger: GGCTACCTGGCCACCATGGCAGGGCTGGCCGCTGGG...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCATCTTCCCGTCTTTCTaGAGATCATTCAGCAAGTCG +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSIFPSF*RSFSKS
Trigger: CGACTTGCTGAATGATCTCCAGAAAGACGGGAAGAT...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCACAAGTCGTGCAGATaGTGTTCAGTGCTGTGTCAG +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELHKSCR*CSVLCQ
Trigger: CTGACACAGCACTGAACACCATCTGCACGACTTGTG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGCCACCACTGTTCTTTaGGGATTCGGTGTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGATTVL*GFGVQS
Trigger: ACTTTGAACACCGAATCCCCAAAGAACAGTGGTGGC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCATGTCCCAGAACAGTaGCCCGGGTGTCATATCCAA +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMHVPEQ*PGCHIQ
Trigger: TTGGATATGACACCCGGGTCACTGTTCTGGGACATG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCCCCAGGGTTTTGGCTaGATGATGCTCTTCATGGGT +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMPQGFG*MMLFMG
Trigger: ACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCGATCCCCAGGGTTTTaGCTGCATGATGCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCERSPGF*LHDALH
Trigger: ATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGGCCACCACTGTTCTTTaGGGATTCGGTGTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: GRGWARTLRSHDLPGCELATTVL*GFGVQS
Trigger: ACTTTGAACACCGAATCCCCAAAGAACAGTGGTGGC...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCAAAAGTGCCATCACTaGTTCCACACCCATCCTGCT +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMQKCHH*FHTHPA
Trigger: AGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGTTCCCAGTCATCGTCTaGCGGACACTCAGGAATAAA +
Preference number: 4 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEFPVIV*RTLRNK
Trigger: TTTATTCCTGAGTGTCCGCCAGACGATGACTGGGAA...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCACAAGTCGTGCAGATaGTGTTCAGTGCTGTGTCAG +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMHKSCR*CSVLCQ
Trigger: CTGACACAGCACTGAACACCATCTGCACGACTTGTG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAACCTGCACGCACTCCATaGGGGGCAAACGCACAGCCT +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKPARTP*GANAQP
Trigger: AGGCTGTGCGTTTGCCCCTCATGGAGTGCGTGCAGG...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAGAACAGCGGCATTCATaGCAGCAGCTGGGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKEQRHS*QQLGPP
Trigger: TGGGGGCCCCAGCTGCTGGCATGAATGCCGCTGTTC...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGTTGTTTTCATCTTCTaGACCAGATGTTCAACATTC +
Preference number: 4 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRVVFIF*TRCSTF
Trigger: GAATGTTGAACATCTGGTGCAGAAGATGAAAACAAC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCGTTGTTTTCATCTTCTaGACCAGATGTTCAACATTC +
Preference number: 4 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSVVFIF*TRCSTF
Trigger: GAATGTTGAACATCTGGTGCAGAAGATGAAAACAAC...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAACGCTTCACCAGGTTGTaGGCGGCCCGGAGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKRFTRL*AARSRP
Trigger: AGGACGACTCCGGGCCGCCCACAACCTGGTGAAGCG...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCGCTTCACCAGGTTGTaGGCGGCCCGGAGTCGTCCT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHRFTRL*AARSRP
Trigger: AGGACGACTCCGGGCCGCCCACAACCTGGTGAAGCG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGCTCACCACACAGGCTaGGGTGTCTGGGGTCCCCTC +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKAHHTG*GVWGPL
Trigger: GAGGGGACCCCAGACACCCCAGCCTGTGTGGTGAGC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCATGATGACAAGGCCCTaGATGTTAAACTTGGTTATG +
Preference number: 4 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGMMTRP*MLNLVM
Trigger: CATAACCAAGTTTAACATCCAGGGCCTTGTCATCAT...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAGACGCGGGCGCCCGTaGAGATACCAACTCGGACCA +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHRRGRP*RYQLGP
Trigger: TGGTCCGAGTTGGTATCTTCACGGGCGCCCGCGTCT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAAAGTGTCAGCCCCAGTaGGGCTGCCATCGCCTCCGA +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKKCQPQ*GCHRLR
Trigger: TCGGAGGCGATGGCAGCCTCACTGGGGCTGACACTT...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGTGGTTATGTTGGCACTaGTCTGTTCCAGGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMWLCWH*SVPGSS
Trigger: AGAAGAACCTGGAACAGATCAGTGCCAACATAACCA...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAATGCTCCAGGTGGGCGTaGTCGGAGGTGTCCAGATCA +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKCSRWA*SEVSRS
Trigger: TGATCTGGACACCTCCGACCACGCCCACCTGGAGCA...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AAACACAGTGGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGTTGGGCTTCCACCCTaGTGCATGTGGCCAAGCACG +
Preference number: 4 (lower is better)
Translates to: KHSGQLAFISVVTLHHCGVGLPP*CMWPST
Trigger: CGTGCTTGGCCACATGCAGCAGGGTGGAAGCCCAAC...ACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCCACTGTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACGAAATGTGCTCCAGGTaGGCGTGGTCGGAGGTGTCC +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHEMCSR*AWSEVS
Trigger: GGACACCTCCGACCACGCCCACCTGGAGCACATTTC...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCTCGGACCACAGCCCTaGCGGCAGCATTCATACCTT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHLGPQP*RQHSYL
Trigger: AAGGTATGAATGCTGCCGTCAGGGCTGTGGTCCGAG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCAAGTCGCTCCACTCTaGACGGAAAGTGTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHQVAPL*TESVSP
Trigger: GGGGCTGACACTTTCCGTTCAGAGTGGAGCGACTTG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAACTTCCACACCCATCCTaGTGCCCAGGATCCGGTCAA +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKLPHPS*CPGSGQ
Trigger: TTGACCGGATCCTGGGCAGCAGGATGGGTGTGGAAG...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAGGTCCCCTCCAAAAGTaGCATCACTGCTTCCACACC +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKGPLQK*HHCFHT
Trigger: GGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACC...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAGCAGATGGTGTTCAGTaGTGTGTCAGCCCCGATGCT +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKADGVQ*CVSPDA
Trigger: AGCATCGGGGCTGACACAGCACTGAACACCATCTGC...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGGCAAACGCACAGCCTaGTTACCAGAGAGGCTCACC +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKGKRTA*LPERLT
Trigger: GGTGAGCCTCTCTGGTAACCAGGCTGTGCGTTTGCC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAAGCACCCGGTTGCCCTaGATAAGGCCAATCCTCACG +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKSTRLP*IRPILT
Trigger: CGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCT...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGATGATGACAAGGCCCTaGATGTTAAACTTGGTTATG +
Preference number: 4 (lower is better)
Translates to: GWARTLRSHDLPGCELTMMMTRP*MLNLVM
Trigger: CATAACCAAGTTTAACATCCAGGGCCTTGTCATCAT...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAAGTTTGGAACCACCTTaGCCAGTCCAGCCTCCAACA +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKSLEPP*PVQPPT
Trigger: TGTTGGAGGCTGGACTGGTCAAGGTGGTTCCAAACT...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCCCGATGCTGAAGTCTaGCCCAGGGACGTTATTGGA +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHPDAEV*PRDVIG
Trigger: TCCAATAACGTCCCTGGGTCAGACTTCAGCATCGGG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACTCCAGACCGTTTCCTTaGAATGTGCTCCAGGTGGGC +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHSRPFP*NVLQVG
Trigger: GCCCACCTGGAGCACATTTCAAGGAAACGGTCTGGA...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACGGTCCCCTCCAAAAGTaGCATCACTGCTTCCACACC +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHGPLQK*HHCFHT
Trigger: GGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACC...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AAACACAGTGGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTCCGACGTTTGGTGCCTaGTGCAGACTGCTTGATTCG +
Preference number: 4 (lower is better)
Translates to: KHSGQLAFISVVTLHHCGPTFGA*CRLLDS
Trigger: CGAATCAAGCAGTCTGCAGCAGGCACCAAACGTCGG...ACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCCACTGTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGAAGTCATTGTCGATTaGGCCAACCAGGCCCACGAT +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKEVIVD*ANQAHD
Trigger: ATCGTGGGCCTGGTTGGCTCAATCGACAATGACTTC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAACTGGGGGTCTGACATaGGCTAGAAGCTTGTATACC +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKTGGLT*ARSLYT
Trigger: GGTATACAAGCTTCTAGCTCATGTCAGACCCCCAGT...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAGTTTGGAACCACCTTaGCCAGTCCAGCCTCCAACA +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHSLEPP*PVQPPT
Trigger: TGTTGGAGGCTGGACTGGTCAAGGTGGTTCCAAACT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAAGTTTGGAACCACCTTaGCCAGTCCAGCCTCCAACA +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKSLEPP*PVQPPT
Trigger: TGTTGGAGGCTGGACTGGTCAAGGTGGTTCCAAACT...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp AAACACAGTGGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTACGTTTGGTGCCTGCTaGAGACTGCTTGATTCGGTC +
Preference number: 4 (lower is better)
Translates to: KHSGQLAFISVVTLHHCGTFGAC*RLLDSV
Trigger: GACCGAATCAAGCAGTCTGCAGCAGGCACCAAACGT...ACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCCACTGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAATCCTGCTATCAAAGATaGCCTTCCCCTCCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKSCYQR*PSPPQS
Trigger: ACTCTGAGGAGGGGAAGGGCATCTTTGATAGCAGGA...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAACTTCAGCTCAGTTACTaGCTGAAAGACCAGGGCCCT +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKLQLSY*LKDQGP
Trigger: AGGGCCCTGGTCTTTCAGCCAGTAACTGAGCTGAAG...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCTTCAGCTCAGTTACTaGCTGAAAGACCAGGGCCCT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHLQLSY*LKDQGP
Trigger: AGGGCCCTGGTCTTTCAGCCAGTAACTGAGCTGAAG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACACTGGGGGTCTGACATaGGCTAGAAGCTTGTATACC +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHTGGLT*ARSLYT
Trigger: GGTATACAAGCTTCTAGCTCATGTCAGACCCCCAGT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCAAAAGTGCCATCACTaGTTCCACACCCATCCTGCT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHQKCHH*FHTHPA
Trigger: AGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAATTCCCAGTCATCGTCTaGCGGACACTCAGGAATAAA +
Preference number: 4 (lower is better)
Translates to: GQLAFISVVTLHHCGASKFPVIV*RTLRNK
Trigger: TTTATTCCTGAGTGTCCGCCAGACGATGACTGGGAA...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACGTTCTTGATGTCTTCTaGGGTGATTGGCTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHVLDVF*GDWLPV
Trigger: AACGGGAAGCCAATCACCTCAGAAGACATCAAGAAC...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACGGAGATCGCGAATGGTaGAGGGTTCCTCAAAAATGT +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHGDREW*RVPQKC
Trigger: ACATTTTTGAGGAACCCTTCACCATTCGCGATCTCC...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACACTTGGCTAGGATTTTaGGGATTGGCCTCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHTWLGF*GLASAS
Trigger: TGAAGCTGAGGCCAATCCTCAAAATCCTAGCCAAGT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACTTCCCAGTCATCGTCTaGCGGACACTCAGGAATAAA +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHFPVIV*RTLRNK
Trigger: TTTATTCCTGAGTGTCCGCCAGACGATGACTGGGAA...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGCCACCACTGTTCTTTaGGGATTCGGTGTTCAAAGT +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKATTVL*GFGVQS
Trigger: ACTTTGAACACCGAATCCCCAAAGAACAGTGGTGGC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR TCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAATGGTTATGTTGGCACTaGTCTGTTCCAGGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKWLCWH*SVPGSS
Trigger: AGAAGAACCTGGAACAGATCAGTGCCAACATAACCA...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACATCTTCCCGTCTTTCTaGAGATCATTCAGCAAGTCG +
Preference number: 4 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHIFPSF*RSFSKS
Trigger: CGACTTGCTGAATGATCTCCAGAAAGACGGGAAGAT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAATGATGACAAGGCCCTaGATGTTAAACTTGGTTATG +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKMMTRP*MLNLVM
Trigger: CATAACCAAGTTTAACATCCAGGGCCTTGTCATCAT...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR GCA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGTTGTTTTCATCTTCTaGACCAGATGTTCAACATTC +
Preference number: 4 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKVVFIF*TRCSTF
Trigger: GAATGTTGAACATCTGGTGCAGAAGATGAAAACAAC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCCCCGCTTCACCAGGTaGTGGGCGGCCCGGAGTCGT +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSPRFTR*WAARSR
Trigger: ACGACTCCGGGCCGCCCACAACCTGGTGAAGCGGGG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
67% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCCCGCTTCACCAGGTaGTGGGCGGCCCGGAGTCGT +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPRFTR*WAARSR
Trigger: ACGACTCCGGGCCGCCCACAACCTGGTGAAGCGGGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCCCCGCTTCACCAGGTaGTGGGCGGCCCGGAGTCGT +
Preference number: 5 (lower is better)
Translates to: GRGWARTLRSHDLPGCELPRFTR*WAARSR
Trigger: ACGACTCCGGGCCGCCCACAACCTGGTGAAGCGGGG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGAACACGGCGATGGCCTaGCCGATCCCCAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRNTAMA*PIPRVL
Trigger: CAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTT...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGACGACCAGCACCCGGTaGCCCTGGATAAGGCCAATC +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRTTSTR*PWIRPI
Trigger: GATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGT...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 90 bp GGTTGTGGGCGGCCCGGAGTCGTCCTTCTCGCTCTCGGAAGTCCTTaGATCGGGCACTTCCAATCACTGTGCCACCCAGCTGAAGCATCA +
Preference number: 5 (lower is better)
Translates to: GCGRPGVVLLALGSP*IGHFQSLCHPAEAS
Trigger: TGATGCTTCAGCTGGGTGGCACAGTGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCGAGAAGGACGACTCCGGGCCGCCCACAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGCGCTCTCGGAAGTCCTaGCATCGGGCACTTCCAATC +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRRSRKS*HRALPI
Trigger: GATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCG...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGAACACGGCGATGGCCTaGCCGATCCCCAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: GRGWARTLRSHDLPGCELNTAMA*PIPRVL
Trigger: CAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGATAAACACCCGACGTTaGGTGCCTGCTGCAGACTGC +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRINTRR*VPAADC
Trigger: GCAGTCTGCAGCAGGCACCAAACGTCGGGTGTTTAT...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGAACACGGCGATGGCCTaGCCGATCCCCAGGGTTTTG +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCENTAMA*PIPRVL
Trigger: CAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTT...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCGGCAGCATTCATACCTaGGGCATCTCCACCAGAGGT +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGGSIHT*GISTRG
Trigger: ACCTCTGGTGGAGATGCCCAAGGTATGAATGCTGCC...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGTGCCACAGAAGTCATaGTCGATTGAGCCAACCAGG +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRVPQKS*SIEPTR
Trigger: CCTGGTTGGCTCAATCGACAATGACTTCTGTGGCAC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGGCAACAATGATGATGTaGAGACGAGAGCCACGGGTC +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRATMMM*RREPRV
Trigger: GACCCGTGGCTCTCGTCTCAACATCATCATTGTTGC...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCATTGGCTTCCCGTTCTaGTCGATGGCACCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSIGFPF*SMAPSA
Trigger: TGCTGAAGGTGCCATCGACAAGAACGGGAAGCCAAT...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 90 bp GCCAGACCCTCAAAGCCATCATGTACGACCAGCACCCGGTTGCCCTaGATAAGGCCAATCCTCACGGTAGAGCGAACAGCGGCATTCATG +
Preference number: 5 (lower is better)
Translates to: ARPSKPSCTTSTRLP*IRPILTVERTAAFM
Trigger: CATGAATGCCGCTGTTCGCTCTACCGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGTACATGATGGCTTTGAGGGTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGTTGTATACCTCCCAGTaGTTCATGAAGCTCCGGCCT +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRLYTSQ*FMKLRP
Trigger: AGGCCGGAGCTTCATGAACAACTGGGAGGTATACAA...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCTTGTATACCTCCCAGTaGTTCATGAAGCTCCGGCCT +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSLYTSQ*FMKLRP
Trigger: AGGCCGGAGCTTCATGAACAACTGGGAGGTATACAA...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCTGAGTCAGGGGTGTaGGCAAAGATCCGTCCATTA +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPESGV*AKIRPL
Trigger: TAATGGACGGATCTTTGCCAACACCCCTGACTCAGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCTCCAGACCGTTTCCTaGAAATGTGCTCCAGGTGGG +
Preference number: 5 (lower is better)
Translates to: GRGWARTLRSHDLPGCELLQTVS*KCAPGG
Trigger: CCCACCTGGAGCACATTTCAAGGAAACGGTCTGGAG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 90 bp TGGCTGAAAGACCAGGGCCCTCTTACGCATCCCCAGAACGCAGCCTaGGTCAGGGGTGTTGGCAAAGATCCGTCCATTACGGTAACTCTC +
Preference number: 5 (lower is better)
Translates to: WLKDQGPLTHPQNAA*VRGVGKDPSITVTL
Trigger: GAGAGTTACCGTAATGGACGGATCTTTGCCAACACCCCTGACTCAGGCTGCGTTCTGGGGATGCGTAAGAGGGCCCTGGTCTTTCAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 90 bp TCATACCTTGGGCATCTCCACCAGAGGTCAACACGGCGATGGCCTTaGCGATCCCCAGGGTTTTGGCTGCATGATGCTCTTCATGGGTCA +
Preference number: 5 (lower is better)
Translates to: SYLGHLHQRSTRRWP*RSPGFWLHDALHGS
Trigger: TGACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGACCTCTGGTGGAGATGCCCAAGGTATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS CCA 90 bp GGGGATTCGGTGTTCAAAGTCTGTCTGGTCCTTCAGCTCAGTTACTaGCTGAAAGACCAGGGCCCTCTTACGCATCCCCAGAACGCAGCC +
Preference number: 5 (lower is better)
Translates to: GDSVFKVCLVLQLSY*LKDQGPLTHPQNAA
Trigger: GGCTGCGTTCTGGGGATGCGTAAGAGGGCCCTGGTCTTTCAGCCAGTAACTGAGCTGAAGGACCAGACAGACTTTGAACACCGAATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGATAAACACCCGACGTTaGGTGCCTGCTGCAGACTGC +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEINTRR*VPAADC
Trigger: GCAGTCTGCAGCAGGCACCAAACGTCGGGTGTTTAT...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGCCTGAGTCAGGGGTGTaGGCAAAGATCCGTCCATTA +
Preference number: 5 (lower is better)
Translates to: GRGWARTLRSHDLPGCELPESGV*AKIRPL
Trigger: TAATGGACGGATCTTTGCCAACACCCCTGACTCAGG...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCTACTTGGCTAGGATTTaGAGGATTGGCCTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSYLARI*RIGLSF
Trigger: GAAGCTGAGGCCAATCCTCAAAATCCTAGCCAAGTA...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTCCAGACCGTTTCCTaGAAATGTGCTCCAGGTGGG +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCELQTVS*KCAPGG
Trigger: CCCACCTGGAGCACATTTCAAGGAAACGGTCTGGAG...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 90 bp CAGCATTCATACCTTGGGCATCTCCACCAGAGGTCAACACGGCGATaGCCTTGCCGATCCCCAGGGTTTTGGCTGCATGATGCTCTTCAT +
Preference number: 5 (lower is better)
Translates to: QHSYLGHLHQRSTRR*PCRSPGFWLHDALH
Trigger: ATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGACCTCTGGTGGAGATGCCCAAGGTATGAATGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGATTGGCTTCCCGTTCTaGTCGATGGCACCTTCAGCA +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEIGFPF*SMAPSA
Trigger: TGCTGAAGGTGCCATCGACAAGAACGGGAAGCCAAT...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGAAGTTTGGAACCACCTaGACCAGTCCAGCCTCCAAC +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEKFGTT*TSPASN
Trigger: GTTGGAGGCTGGACTGGTCAAGGTGGTTCCAAACTT...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCCCCTGGATGTTAAACTaGGTTATGTTGGCACTGATC +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSPWMLN*VMLALI
Trigger: GATCAGTGCCAACATAACCAAGTTTAACATCCAGGG...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCTCCAGACCGTTTCCTaGAAATGTGCTCCAGGTGGG +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMLQTVS*KCAPGG
Trigger: CCCACCTGGAGCACATTTCAAGGAAACGGTCTGGAG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 90 bp ACGGCCACTGTGTGCAACCCACCCTTAGAGACTGGGGGTCTGACATaGGCTAGAAGCTTGTATACCTCCCAGTTGTTCATGAAGCTCCGG +
Preference number: 5 (lower is better)
Translates to: TATVCNPPLETGGLT*ARSLYTSQLFMKLR
Trigger: CCGGAGCTTCATGAACAACTGGGAGGTATACAAGCTTCTAGCTCATGTCAGACCCCCAGTCTCTAAGGGTGGGTTGCACACAGTGGCCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 90 bp ATTCGGTGTTCAAAGTCTGTCTGGTCCTTCAGCTCAGTTACTGGCTaGAAGACCAGGGCCCTCTTACGCATCCCCAGAACGCAGCCTGAG +
Preference number: 5 (lower is better)
Translates to: IRCSKSVWSFSSVTG*KTRALLRIPRTQPE
Trigger: CTCAGGCTGCGTTCTGGGGATGCGTAAGAGGGCCCTGGTCTTTCAGCCAGTAACTGAGCTGAAGGACCAGACAGACTTTGAACACCGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 90 bp AGAGGTCAACACGGCGATGGCCTTGCCGATCCCCAGGGTTTTGGCTaGATGATGCTCTTCATGGGTCATGATCCACTCAGTGTCAGGAAT +
Preference number: 5 (lower is better)
Translates to: RGQHGDGLADPQGFG*MMLFMGHDPLSVRN
Trigger: ATTCCTGACACTGAGTGGATCATGACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGACCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS CCA 90 bp GCGGCTTCTCCAGACCGTTTCCTTGAAATGTGCTCCAGGTGGGCGTaGTCGGAGGTGTCCAGATCAATCTCGTACTTGGCTAGGATTTTG +
Preference number: 5 (lower is better)
Translates to: AASPDRFLEMCSRWA*SEVSRSISYLARIL
Trigger: CAAAATCCTAGCCAAGTACGAGATTGATCTGGACACCTCCGACCACGCCCACCTGGAGCACATTTCAAGGAAACGGTCTGGAGAAGCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 90 bp CTAGTCTCCACTGGTCATCTGCCTTTGACTCCGGTATGGTCATGTTaGAGGTTGAAGCTTCCCCCGCTGGGAAGCGATAACTGTGGGTCA +
Preference number: 5 (lower is better)
Translates to: LVSTGHLPLTPVWSC*RLKLPPLGSDNCGS
Trigger: TGACCCACAGTTATCGCTTCCCAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATGACCAGTGGAGACTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS CCA 90 bp CCATACCGTCTAGTCTCCACTGGTCATCTGCCTTTGACTCCGGTATaGTCATGTTGGAGGTTGAAGCTTCCCCCGCTGGGAAGCGATAAC +
Preference number: 5 (lower is better)
Translates to: PYRLVSTGHLPLTPV*SCWRLKLPPLGSDN
Trigger: GTTATCGCTTCCCAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATGACCAGTGGAGACTAGACGGTATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGGCAACAATGATGATGTaGAGACGAGAGCCACGGGTC +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMATMMM*RREPRV
Trigger: GACCCGTGGCTCTCGTCTCAACATCATCATTGTTGC...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGTTCTCATCCATAGCCTaGGTCACGTCTTTGGTCACC +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEFSSIA*VTSLVT
Trigger: GGTGACCAAAGACGTGACCAAGGCTATGGATGAGAA...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGAAGTTTGGAACCACCTaGACCAGTCCAGCCTCCAAC +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMKFGTT*TSPASN
Trigger: GTTGGAGGCTGGACTGGTCAAGGTGGTTCCAAACTT...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGTTAAACTTGGTTATGTaGGCACTGATCTGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRLNLVM*ALICSR
Trigger: CCTGGAACAGATCAGTGCCAACATAACCAAGTTTAA...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AGTGGAAGGGAGGAAGGACAGCCACCTAGGAGAGTCACTCACCGCCCCTCCTCCTTAAACTTGGTTATGTaGGCACTGATCTGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: SGREEGQPPRRVTHRPSSLNLVM*ALICSR
Trigger: CCTGGAACAGATCAGTGCCAACATAACCAAGTTTAA...GGAGGAGGGGCGGTGAGTGACTCTCCTAGGTGGCTGTCCTTCCTCCCTTCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCCCCTGGATGTTAAACTaGGTTATGTTGGCACTGATC +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGPWMLN*VMLALI
Trigger: GATCAGTGCCAACATAACCAAGTTTAACATCCAGGG...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGCCTGAGTCAGGGGTGTaGGCAAAGATCCGTCCATTA +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMPESGV*AKIRPL
Trigger: TAATGGACGGATCTTTGCCAACACCCCTGACTCAGG...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 90 bp GTCAACACGGCGATGGCCTTGCCGATCCCCAGGGTTTTGGCTGCATaGTGCTCTTCATGGGTCATGATCCACTCAGTGTCAGGAATAGAT +
Preference number: 5 (lower is better)
Translates to: VNTAMALPIPRVLAA*CSSWVMIHSVSGID
Trigger: ATCTATTCCTGACACTGAGTGGATCATGACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGTTCTCATCCATAGCCTaGGTCACGTCTTTGGTCACC +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMFSSIA*VTSLVT
Trigger: GGTGACCAAAGACGTGACCAAGGCTATGGATGAGAA...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGTTGTATACCTCCCAGTaGTTCATGAAGCTCCGGCCT +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMLYTSQ*FMKLRP
Trigger: AGGCCGGAGCTTCATGAACAACTGGGAGGTATACAA...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCTCCTCAGAGTACAGGTaGAAAATGAAGTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGSSEYR*KMKSVV
Trigger: CACTACTGACTTCATTTTCAACCTGTACTCTGAGGA...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGTACTTGGCTAGGATTTaGAGGATTGGCCTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEYLARI*RIGLSF
Trigger: GAAGCTGAGGCCAATCCTCAAAATCCTAGCCAAGTA...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CCCTCCTCCAGCTCCTGGCCACAGCTGATCCTGGTTGCAGGCATGGAGTACAGGAGATCAATCTCGTACTaGGCTAGGATTTTGAGGATT +
Preference number: 5 (lower is better)
Translates to: PSSSSWPQLILVAGMEYRRSISY*ARILRI
Trigger: AATCCTCAAAATCCTAGCCAAGTACGAGATTGATCT...CCTGTACTCCATGCCTGCAACCAGGATCAGCTGTGGCCAGGAGCTGGAGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAGGGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGTTCACCACCAGGTTCTaGATGTCTTCTGAGGTGATT +
Preference number: 5 (lower is better)
Translates to: KGRGWARTLRSHDLPGCEFTTRF*MSSEVI
Trigger: AATCACCTCAGAAGACATCAAGAACCTGGTGGTGAA...CTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GATCCTGGTTGCAGGCATGGAGTACAGGGAAACCTAGAAGGGGAGGGGCTGGGCAGATCAATCTCGTACTaGGCTAGGATTTTGAGGATT +
Preference number: 5 (lower is better)
Translates to: DPGCRHGVQGNLEGEGLGRSISY*ARILRI
Trigger: AATCCTCAAAATCCTAGCCAAGTACGAGATTGATCT...GCCCAGCCCCTCCCCTTCTAGGTTTCCCTGTACTCCATGCCTGCAACCAGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGGAGGGGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGAGATCAATCTCGTACTaGGCTAGGATTTTGAGGATT +
Preference number: 5 (lower is better)
Translates to: GRGWARTLRSHDLPGCELRSISY*ARILRI
Trigger: AATCCTCAAAATCCTAGCCAAGTACGAGATTGATCT...CAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACACGACCAGCACCCGGTaGCCCTGGATAAGGCCAATC +
Preference number: 5 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHTTSTR*PWIRPI
Trigger: GATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGT...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCTGGGCTAGAACACTGAGAAGCCATGATCTACCAGGGTGTGAGCTGACCATGTTAAACTTGGTTATGTaGGCACTGATCTGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: GWARTLRSHDLPGCELTMLNLVM*ALICSR
Trigger: CCTGGAACAGATCAGTGCCAACATAACCAAGTTTAA...CATGGTCAGCTCACACCCTGGTAGATCATGGCTTCTCAGTGTTCTAGCCCAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCGCTCTCGGAAGTCCTaGCATCGGGCACTTCCAATC +
Preference number: 5 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHRSRKS*HRALPI
Trigger: GATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAACACAGTGGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTCGCTCTCGGAAGTCCTaGCATCGGGCACTTCCAATC +
Preference number: 5 (lower is better)
Translates to: KHSGQLAFISVVTLHHCGRSRKS*HRALPI
Trigger: GATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCG...ACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCCACTGTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAATAAACACCCGACGTTaGGTGCCTGCTGCAGACTGC +
Preference number: 5 (lower is better)
Translates to: GQLAFISVVTLHHCGASKINTRR*VPAADC
Trigger: GCAGTCTGCAGCAGGCACCAAACGTCGGGTGTTTAT...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 90 bp TCATTCCTCAGCACCAGGCCTCTCTTCACAGTTGTTTTCATCTTCTaGACCAGATGTTCAACATTCACCTGGAGATCGCGAATGGTGAAG +
Preference number: 5 (lower is better)
Translates to: SFLSTRPLFTVVFIF*TRCSTFTWRSRMVK
Trigger: CTTCACCATTCGCGATCTCCAGGTGAATGTTGAACATCTGGTGCAGAAGATGAAAACAACTGTGAAGAGAGGCCTGGTGCTGAGGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAAGGCAGCATTCATACCTaGGGCATCTCCACCAGAGGT +
Preference number: 5 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKGSIHT*GISTRG
Trigger: ACCTCTGGTGGAGATGCCCAAGGTATGAATGCTGCC...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAAGCAACAATGATGATGTaGAGACGAGAGCCACGGGTC +
Preference number: 5 (lower is better)
Translates to: GQLAFISVVTLHHCGASKATMMM*RREPRV
Trigger: GACCCGTGGCTCTCGTCTCAACATCATCATTGTTGC...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp AAACACAGTGGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGTGCCACAGAAGTCATaGTCGATTGAGCCAACCAGG +
Preference number: 5 (lower is better)
Translates to: KHSGQLAFISVVTLHHCGVPQKS*SIEPTR
Trigger: CCTGGTTGGCTCAATCGACAATGACTTCTGTGGCAC...ACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCCACTGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAATTCTCATCCATAGCCTaGGTCACGTCTTTGGTCACC +
Preference number: 5 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKFSSIA*VTSLVT
Trigger: GGTGACCAAAGACGTGACCAAGGCTATGGATGAGAA...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAATACTTGGCTAGGATTTaGAGGATTGGCCTCAGCTTC +
Preference number: 5 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKYLARI*RIGLSF
Trigger: GAAGCTGAGGCCAATCCTCAAAATCCTAGCCAAGTA...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACTTCACCACCAGGTTCTaGATGTCTTCTGAGGTGATT +
Preference number: 5 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHFTTRF*MSSEVI
Trigger: AATCACCTCAGAAGACATCAAGAACCTGGTGGTGAA...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp TTACACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACCCCTGGATGTTAAACTaGGTTATGTTGGCACTGATC +
Preference number: 5 (lower is better)
Translates to: LHFITVVRVKGPKTLCYHPWMLN*VMLALI
Trigger: GATCAGTGCCAACATAACCAAGTTTAACATCCAGGG...GTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp GGCCAGCTGGCATTTATTAGTGTAGTTACACTTCATCACTGTGGTGCGAGTAAATCCTCAGAGTACAGGTaGAAAATGAAGTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: GQLAFISVVTLHHCGASKSSEYR*KMKSVV
Trigger: CACTACTGACTTCATTTTCAACCTGTACTCTGAGGA...TTTACTCGCACCACAGTGATGAAGTGTAACTACACTAATAAATGCCAGCTGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS-3UTR CAA 90 bp CACTTCATCACTGTGGTGCGAGTAAAGGGACCTAAGACTCTTTGTTATCACAAATCCTCAGAGTACAGGTaGAAAATGAAGTCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: HFITVVRVKGPKTLCYHKSSEYR*KMKSVV
Trigger: CACTACTGACTTCATTTTCAACCTGTACTCTGAGGA...TTTGTGATAACAAAGAGTCTTAGGTCCCTTTACTCGCACCACAGTGATGAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 72 bp GCGGCCCGGAGTCGTCCTTCTCGCTCTCGGAAGTCCTaGCATCGGGCACTTCCAATCACTGTGCCACCCAGC +
Preference number: 6 (lower is better)
Translates to: AARSRPSRSRKS*HRALPITVPPS
Trigger: GCTGGGTGGCACAGTGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCGAGAAGGACGACTCCGGGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS CAA 90 bp TCGCCTCCGATGACACACAGATTGGTGATCCCCCGCTTCACCAGGTaGTGGGCGGCCCGGAGTCGTCCTTCTCGCTCTCGGAAGTCCTTG +
Preference number: 6 (lower is better)
Translates to: SPPMTHRLVIPRFTR*WAARSRPSRSRKSL
Trigger: CAAGGACTTCCGAGAGCGAGAAGGACGACTCCGGGCCGCCCACAACCTGGTGAAGCGGGGGATCACCAATCTGTGTGTCATCGGAGGCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS GCA 72 bp CGGCCCGGAGTCGTCCTTCTCGCTCTCGGAAGTCCTTaGATCGGGCACTTCCAATCACTGTGCCACCCAGCT +
Preference number: 6 (lower is better)
Translates to: RPGVVLLALGSP*IGHFQSLCHPA
Trigger: AGCTGGGTGGCACAGTGATTGGAAGTGCCCGATGCAAGGACTTCCGAGAGCGAGAAGGACGACTCCGGGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS CAA 72 bp ATGACACACAGATTGGTGATCCCCCGCTTCACCAGGTaGTGGGCGGCCCGGAGTCGTCCTTCTCGCTCTCGG +
Preference number: 6 (lower is better)
Translates to: MTHRLVIPRFTR*WAARSRPSRSR
Trigger: CCGAGAGCGAGAAGGACGACTCCGGGCCGCCCACAACCTGGTGAAGCGGGGGATCACCAATCTGTGTGTCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS TCA 72 bp CACACCCATCCTGCTGCCCAGGATCCGGTCAAAGGCTaGTGGTGTCCCACCCCGCTGTACATGTCCCAGAAC +
Preference number: 6 (lower is better)
Translates to: HTHPAAQDPVKG*WCPTPLYMSQN
Trigger: GTTCTGGGACATGTACAGCGGGGTGGGACACCATCAGCCTTTGACCGGATCCTGGGCAGCAGGATGGGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 72 bp GACCAGGGCCCTCTTACGCATCCCCAGAACGCAGCCTaGGTCAGGGGTGTTGGCAAAGATCCGTCCATTACG +
Preference number: 6 (lower is better)
Translates to: DQGPLTHPQNAA*VRGVGKDPSIT
Trigger: CGTAATGGACGGATCTTTGCCAACACCCCTGACTCAGGCTGCGTTCTGGGGATGCGTAAGAGGGCCCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 72 bp GGGCATCTCCACCAGAGGTCAACACGGCGATGGCCTTaGCGATCCCCAGGGTTTTGGCTGCATGATGCTCTT +
Preference number: 6 (lower is better)
Translates to: GHLHQRSTRRWP*RSPGFWLHDAL
Trigger: AAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGACCTCTGGTGGAGATGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS CAA 90 bp CCTTTGGCCAGACCCTCAAAGCCATCATGTACGACCAGCACCCGGTaGCCCTGGATAAGGCCAATCCTCACGGTAGAGCGAACAGCGGCA +
Preference number: 6 (lower is better)
Translates to: PLARPSKPSCTTSTR*PWIRPILTVERTAA
Trigger: TGCCGCTGTTCGCTCTACCGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGTACATGATGGCTTTGAGGGTCTGGCCAAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 72 bp ACACAAACGTCCTCTGGTGGCTCTGAGCCGTGGTGGTaGTGGCGTCTACGATCTCCACAATCCTGTGCAGGG +
Preference number: 6 (lower is better)
Translates to: TQTSSGGSEPWW*WRLRSPQSCAG
Trigger: CCCTGCACAGGATTGTGGAGATCGTAGACGCCATCACCACCACGGCTCAGAGCCACCAGAGGACGTTTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 72 bp ATGGTGTCCCACCCCGCTGTACATGTCCCAGAACAGTaGCCCGGGTGTCATATCCAAGGCGCTTCACCACCA +
Preference number: 6 (lower is better)
Translates to: MVSHPAVHVPEQ*PGCHIQGASPP
Trigger: TGGTGGTGAAGCGCCTTGGATATGACACCCGGGTCACTGTTCTGGGACATGTACAGCGGGGTGGGACACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp TACCTTGGGCATCTCCACCAGAGGTCAACACGGCGATaGCCTTGCCGATCCCCAGGGTTTTGGCTGCATGAT +
Preference number: 6 (lower is better)
Translates to: YLGHLHQRSTRR*PCRSPGFWLHD
Trigger: ATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTGTTGACCTCTGGTGGAGATGCCCAAGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229280.2
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS GCA 72 bp CACGGCGATGGCCTTGCCGATCCCCAGGGTTTTGGCTaGATGATGCTCTTCATGGGTCATGATCCACTCAGT +
Preference number: 6 (lower is better)
Translates to: HGDGLADPQGFG*MMLFMGHDPLS
Trigger: ACTGAGTGGATCATGACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS CCA 72 bp TCAAAGCCATCATGTACGACCAGCACCCGGTTGCCCTaGATAAGGCCAATCCTCACGGTAGAGCGAACAGCG +
Preference number: 6 (lower is better)
Translates to: SKPSCTTSTRLP*IRPILTVERTA
Trigger: CGCTGTTCGCTCTACCGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGTACATGATGGCTTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 72 bp AGACCCTCAAAGCCATCATGTACGACCAGCACCCGGTaGCCCTGGATAAGGCCAATCCTCACGGTAGAGCGA +
Preference number: 6 (lower is better)
Translates to: RPSKPSCTTSTR*PWIRPILTVER
Trigger: TCGCTCTACCGTGAGGATTGGCCTTATCCAGGGCAACCGGGTGCTGGTCGTACATGATGGCTTTGAGGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 72 bp GCGATGGCCTTGCCGATCCCCAGGGTTTTGGCTGCATaGTGCTCTTCATGGGTCATGATCCACTCAGTGTCA +
Preference number: 6 (lower is better)
Translates to: AMALPIPRVLAA*CSSWVMIHSVS
Trigger: TGACACTGAGTGGATCATGACCCATGAAGAGCATCATGCAGCCAAAACCCTGGGGATCGGCAAGGCCATCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS GCA 72 bp GGAATGACCACAAACGGGATGCAGAGCTCATCAAACTaGTTCCTGCCTTCCATCAGCTCCAAGCCCCCTGTG +
Preference number: 6 (lower is better)
Translates to: GMTTNGMQSSSN*FLPSISSKPPV
Trigger: CACAGGGGGCTTGGAGCTGATGGAAGGCAGGAAGCAGTTTGATGAGCTCTGCATCCCGTTTGTGGTCATTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp CCAGACCGTTTCCTTGAAATGTGCTCCAGGTGGGCGTaGTCGGAGGTGTCCAGATCAATCTCGTACTTGGCT +
Preference number: 6 (lower is better)
Translates to: PDRFLEMCSRWA*SEVSRSISYLA
Trigger: AGCCAAGTACGAGATTGATCTGGACACCTCCGACCACGCCCACCTGGAGCACATTTCAAGGAAACGGTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp GCTTCTCCAGACCGTTTCCTTGAAATGTGCTCCAGGTaGGCGTGGTCGGAGGTGTCCAGATCAATCTCGTAC +
Preference number: 6 (lower is better)
Translates to: ASPDRFLEMCSR*AWSEVSRSISY
Trigger: GTACGAGATTGATCTGGACACCTCCGACCACGCCCACCTGGAGCACATTTCAAGGAAACGGTCTGGAGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp CTAGTCTCCACTGGTCATCTGCCTTTGACTCCGGTATaGTCATGTTGGAGGTTGAAGCTTCCCCCGCTGGGA +
Preference number: 6 (lower is better)
Translates to: LVSTGHLPLTPV*SCWRLKLPPLG
Trigger: TCCCAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATGACCAGTGGAGACTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS CAA 72 bp CATCTGCCTTTGACTCCGGTATGGTCATGTTGGAGGTaGAAGCTTCCCCCGCTGGGAAGCGATAACTGTGGG +
Preference number: 6 (lower is better)
Translates to: HLPLTPVWSCWR*KLPPLGSDNCG
Trigger: CCCACAGTTATCGCTTCCCAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS TCA 72 bp GTCTTTCTGGAGATCATTCAGCAAGTCGCTCCACTCTaGACGGAAAGTGTCAGCCCCAGTGAGGCTGCCATC +
Preference number: 6 (lower is better)
Translates to: VFLEIIQQVAPL*TESVSPSEAAI
Trigger: GATGGCAGCCTCACTGGGGCTGACACTTTCCGTTCAGAGTGGAGCGACTTGCTGAATGATCTCCAGAAAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000229344.2
ENSMUST00000230445.2
CDS TCA 72 bp TCCAAGGCGCTTCACCACCAGGTTCTTGATGTCTTCTaGGGTGATTGGCTTCCCGTTCTTGTCGATGGCACC +
Preference number: 6 (lower is better)
Translates to: SKALHHQVLDVF*GDWLPVLVDGT
Trigger: GGTGCCATCGACAAGAACGGGAAGCCAATCACCTCAGAAGACATCAAGAACCTGGTGGTGAAGCGCCTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS TCA 72 bp CTGACCCAGGGACGTTATTGGAAACCGTGGCCGGAATaGCCACAAACGGGATGCAGAGCTCATCAAACTGCT +
Preference number: 6 (lower is better)
Translates to: LTQGRYWKPWPE*PQTGCRAHQTA
Trigger: AGCAGTTTGATGAGCTCTGCATCCCGTTTGTGGTCATTCCGGCCACGGTTTCCAATAACGTCCCTGGGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp ACTGGTCATCTGCCTTTGACTCCGGTATGGTCATGTTaGAGGTTGAAGCTTCCCCCGCTGGGAAGCGATAAC +
Preference number: 6 (lower is better)
Translates to: TGHLPLTPVWSC*RLKLPPLGSDN
Trigger: GTTATCGCTTCCCAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATGACCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS CAA 72 bp TGGGCGTGGTCGGAGGTGTCCAGATCAATCTCGTACTaGGCTAGGATTTTGAGGATTGGCCTCAGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: WAWSEVSRSISY*ARILRIGLSFS
Trigger: GCTGAAGCTGAGGCCAATCCTCAAAATCCTAGCCAAGTACGAGATTGATCTGGACACCTCCGACCACGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CCA 72 bp ACCCATCTTAGTGGCAAAATTCCTGTCAAAGGGAGTTaGGCTTCCACCCTGCTGCATGTGGCCAAGCACGTT +
Preference number: 6 (lower is better)
Translates to: THLSGKIPVKGS*ASTLLHVAKHV
Trigger: AACGTGCTTGGCCACATGCAGCAGGGTGGAAGCCCAACTCCCTTTGACAGGAATTTTGCCACTAAGATGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 90 bp TTGGATCATCATCCATACCGTCTAGTCTCCACTGGTCATCTGCCTTaGACTCCGGTATGGTCATGTTGGAGGTTGAAGCTTCCCCCGCTG +
Preference number: 6 (lower is better)
Translates to: LDHHPYRLVSTGHLP*TPVWSCWRLKLPPL
Trigger: CAGCGGGGGAAGCTTCAACCTCCAACATGACCATACCGGAGTCAAAGGCAGATGACCAGTGGAGACTAGACGGTATGGATGATGATCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229344.2
CDS TCA 72 bp GTGTGCAACCCACCCTTAGAGACTGGGGGTCTGACATaGGCTAGAAGCTTGTATACCTCCCAGTTGTTCATG +
Preference number: 6 (lower is better)
Translates to: VCNPPLETGGLT*ARSLYTSQLFM
Trigger: CATGAACAACTGGGAGGTATACAAGCTTCTAGCTCATGTCAGACCCCCAGTCTCTAAGGGTGGGTTGCACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS GCA 72 bp ATGATAAACACCCGACGTTTGGTGCCTGCTGCAGACTaGTTGATTCGGTCACAAGTCGTGCAGATGGTGTTC +
Preference number: 6 (lower is better)
Translates to: MINTRRLVPAAD*LIRSQVVQMVF
Trigger: GAACACCATCTGCACGACTTGTGACCGAATCAAGCAGTCTGCAGCAGGCACCAAACGTCGGGTGTTTATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 72 bp ATAAACACCCGACGTTTGGTGCCTGCTGCAGACTGCTaGATTCGGTCACAAGTCGTGCAGATGGTGTTCAGT +
Preference number: 6 (lower is better)
Translates to: INTRRLVPAADC*IRSQVVQMVFS
Trigger: ACTGAACACCATCTGCACGACTTGTGACCGAATCAAGCAGTCTGCAGCAGGCACCAAACGTCGGGTGTTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 72 bp TTAATGGCTTCATCAAATCTCTTCTCATCCATAGCCTaGGTCACGTCTTTGGTCACCTGCACGCACTCCATG +
Preference number: 6 (lower is better)
Translates to: LMASSNLFSSIA*VTSLVTCTHSM
Trigger: CATGGAGTGCGTGCAGGTGACCAAAGACGTGACCAAGGCTATGGATGAGAAGAGATTTGATGAAGCCATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2
CDS CAA 72 bp TTGGTTATGTTGGCACTGATCTGTTCCAGGTTCTTCTaGGGGAGAGTCCTTTTAGTACCAAGTTTGGAACCA +
Preference number: 6 (lower is better)
Translates to: LVMLALICSRFF*GRVLLVPSLEP
Trigger: TGGTTCCAAACTTGGTACTAAAAGGACTCTCCCCAAGAAGAACCTGGAACAGATCAGTGCCAACATAACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000051226.8
ENSMUST00000163507.8
ENSMUST00000230445.2