RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PFKFB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026773

Ensembl transcript IDs: ENSMUST00000028114.13, ENSMUST00000049849.12, ENSMUST00000100411.4, ENSMUST00000114844.8, ENSMUST00000114845.10, ENSMUST00000114846.9, ENSMUST00000170196.9, ENSMUST00000171188.9, ENSMUST00000179584.8, ENSMUST00000183869.8, ENSMUST00000191668.6, ENSMUST00000192949.6, ENSMUST00000195779.6

Found 533 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGGCACCGCTCCGGGAGCTCTTCATGTTTTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGCAGCTTGGCAGGGCAGCAGAAGTGG +
Preference number: 1 (lower is better)
Translates to: RHRSGSSSCFVRAAA*ALPGAGSLAGQQKW
Trigger: CCACTTCTGCTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAACATGAAGAGCTCCCGGAGCGGTGCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
3UTR CCA 90 bp GACAAGCCTGGAGGCCTGGGCTCAATCTCTGGAGGCTGGGAGAGATaGACTCCTGTCAAGCTGTCCTCTGACCCCTACATGTGTGAACCC +
Preference number: 1 (lower is better)
Translates to: DKPGGLGSISGGWER*TPVKLSSDPYMCEP
Trigger: GGGTTCACACATGTAGGGGTCAGAGGACAGCTTGACAGGAGTCCATCTCTCCCAGCCTCCAGAGATTGAGCCCAGGCCTCCAGGCTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR CCA 90 bp ATGCCGACCTCCATTCTCCCGAGTCCAGAAGTCCTTGCGATCACTTaGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGG +
Preference number: 1 (lower is better)
Translates to: MPTSILPSPEVLAIT*PREDEQAQGRLWKW
Trigger: CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGACTCGGGAGAATGGAGGTCGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 90 bp AAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGTaGAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCCCTG +
Preference number: 1 (lower is better)
Translates to: KQPTTESTQVPPGPR*RTEGLRDSGKRGAL
Trigger: CAGGGCTCCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 90 bp TCTCCCGAGTCCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATaGGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACAT +
Preference number: 1 (lower is better)
Translates to: SPESRSPCDHLASRR*AGTRQAVEMEWNPH
Trigger: ATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGACTCGGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 90 bp AGCAGGCGGCCTGACATGAGCCTTCCTTGGGCCACCGTCCCTTCTTaGACAATGGGAGTGAAGTTGAAGGCTCTTAGACTCCCCATCTTA +
Preference number: 1 (lower is better)
Translates to: SRRPDMSLPWATVPS*TMGVKLKALRLPIL
Trigger: TAAGATGGGGAGTCTAAGAGCCTTCAACTTCACTCCCATTGTTCAAGAAGGGACGGTGGCCCAAGGAAGGCTCATGTCAGGCCGCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 90 bp CTCAAGGTTTCCTCAGGAGGAGAAATCCCATACCCAATGCAGCAATaGCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGC +
Preference number: 1 (lower is better)
Translates to: LKVSSGGEIPYPMQQ*PSLLSLRPPPRPRC
Trigger: GCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATTTCTCCTCCTGAGGAAACCTTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 90 bp GGGTCTGATCTCACCTCCTCTAGAACTATAGCCCTCCCCAAGCTTTaGAAGGGCCTGAGAGGTCAGACAGCCCTGGAAGTCGAAAGAGAA +
Preference number: 1 (lower is better)
Translates to: GSDLTSSRTIALPKL*KGLRGQTALEVERE
Trigger: TTCTCTTTCGACTTCCAGGGCTGTCTGACCTCTCAGGCCCTTCCAAAGCTTGGGGAGGGCTATAGTTCTAGAGGAGGTGAGATCAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 90 bp AGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTaGAGGATGCATGTTCCACCCGCATCAAGATCTCCTGGGCCTGAT +
Preference number: 1 (lower is better)
Translates to: SSMGATHPIHQVTGF*RMHVPPASRSPGPD
Trigger: ATCAGGCCCAGGAGATCTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 90 bp ACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATaGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTC +
Preference number: 1 (lower is better)
Translates to: TWPREDEQAQGRLWK*NGTHISALVLLGRV
Trigger: GACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
3UTR CCA 90 bp ATTGGTTGCTTCCAGGCTTGGGATGTCCCGTCCTCCCCCAGAACATaGGTGGACAAAGGGGAGAAACAGGAAGACAAAGACATTAGCGCT +
Preference number: 1 (lower is better)
Translates to: IGCFQAWDVPSSPRT*VDKGEKQEDKDISA
Trigger: AGCGCTAATGTCTTTGTCTTCCTGTTTCTCCCCTTTGTCCACCCATGTTCTGGGGGAGGACGGGACATCCCAAGCCTGGAAGCAACCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 90 bp GAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTaGCTTTTGAAGGATGCATGTTCCACCCGCATCAAGATCTCCTGG +
Preference number: 1 (lower is better)
Translates to: EWKFYGCYPPHPPSH*LLKDACSTRIKISW
Trigger: CCAGGAGATCTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 90 bp GAAGCGAGTCCCGCAGGTGTATCTCAACCAGGTTTTTATTGTTCTTaGAACTGCAAACTACACAGATGTCTGAAAGGAAGGCGTGTCCTG +
Preference number: 1 (lower is better)
Translates to: EASPAGVSQPGFYCS*NCKLHRCLKGRRVL
Trigger: CAGGACACGCCTTCCTTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACCTGCGGGACTCGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
3UTR GCA 90 bp CACACACTGATGCGCACGCACACACACACACAACCACGCACTAAATaGTTAGAAAGAAAACTGACACTTGTTCTCCGCAAAAACCTGAGA +
Preference number: 1 (lower is better)
Translates to: HTLMRTHTHTQPRTK*LERKLTLVLRKNLR
Trigger: TCTCAGGTTTTTGCGGAGAACAAGTGTCAGTTTTCTTTCTAAGCATTTAGTGCGTGGTTGTGTGTGTGTGTGCGTGCGCATCAGTGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR TCA 90 bp TATCTATCTATCTATCTTTCTATCTATCATCTATCTATATCCTGGTaGACCACAGATATAAAGGGTAGTGGGCTGGGCCAAATGTTTGAG +
Preference number: 1 (lower is better)
Translates to: YLSIYLSIYHLSISW*TTDIKGSGLGQMFE
Trigger: CTCAAACATTTGGCCCAGCCCACTACCCTTTATATCTGTGGTTCACCAGGATATAGATAGATGATAGATAGAAAGATAGATAGATAGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCTTTGGAAGGGCCTaGGAGGTCAGACAGCCCTGG +
Preference number: 2 (lower is better)
Translates to: ASRPKVKNRRPKGLWEEGSFGRA*EVRQPW
Trigger: CCAGGGCTGTCTGACCTCTCAGGCCCTTCCAAAGCT...CCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATAAAAGCCAGCTTTGGAAGGGCCTaGGAGGTCAGACAGCCCTGG +
Preference number: 2 (lower is better)
Translates to: CPSLLSLRPPPRPRCIKASFGRA*EVRQPW
Trigger: CCAGGGCTGTCTGACCTCTCAGGCCCTTCCAAAGCT...GGCTTTTATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGAGCACCCTAGGTTCTTaGAGTGAGGTGTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: VGEWKFYGCYPPHPPSHWSTLGS*SEVWGG
Trigger: CCCTCCCCACACCTCACTTCAAGAACCTAGGGTGCT...CCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGTTTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 2 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQFCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAA...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGTTGTCCCTGAGCCTCTaGCAAGTGGGGTCTAACTCT +
Preference number: 2 (lower is better)
Translates to: ASRPKVKNRRPKGLWEEGLSLSL*QVGSNS
Trigger: AGAGTTAGACCCCACTTGCCAGAGGCTCAGGGACAA...CCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATATTGGCCTCGAGAAGATaGGCAGGCACAAGGCAGGCT +
Preference number: 2 (lower is better)
Translates to: QQCPSLLSLRPPPRPRCILASRR*AGTRQA
Trigger: AGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAA...TATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCCAAGCCTCTTGTCTCTaGGGCCTCCTCCTAGGCCAA +
Preference number: 2 (lower is better)
Translates to: FGWESGSSMGATHPIHQVQASCL*GLLLGQ
Trigger: TTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTG...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTGAGGCCTAAGGGACTCTaGGAAGAGGGGAGCCCTGGT +
Preference number: 2 (lower is better)
Translates to: DSSRWPAWWYEAYSSRHLRPKGL*EEGSPG
Trigger: ACCAGGGCTCCCCTCTTCCCAGAGTCCCTTAGGCCT...CAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTGTGTGCAACTTGTCCCTaGGCCTCTGGCAAGTGGGGT +
Preference number: 2 (lower is better)
Translates to: DSSRWPAWWYEAYSSRHLCATCP*ASGKWG
Trigger: ACCCCACTTGCCAGAGGCTCAGGGACAAGTTGCACA...CAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTATCTGAGCAGGCGGCCTaGCATGAGCCTTCCTTGGGC +
Preference number: 2 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVSEQAA*HEPSLG
Trigger: GCCCAAGGAAGGCTCATGTCAGGCCGCCTGCTCAGA...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCCCCCCAGAACATGGGTaGACAAAGGGGAGAAACAGG +
Preference number: 2 (lower is better)
Translates to: FGWESGSSMGATHPIHQVPPEHG*TKGRNR
Trigger: CCTGTTTCTCCCCTTTGTCCACCCATGTTCTGGGGG...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CAA 90 bp TTTGAGAGGCTGAGACAGGAGGACGGCCATGAGTTTGAGGCTAGTTaGGGCTACACAGTTCTTATCCTGTTCCCTACCCCACCCCCAACC +
Preference number: 2 (lower is better)
Translates to: FERLRQEDGHEFEAS*GYTVLILFPTPPPT
Trigger: GGTTGGGGGTGGGGTAGGGAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTCCTGTCTCAGCCTCTCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCTTGGCCTCGAGAAGATaGGCAGGCACAAGGCAGGCT +
Preference number: 2 (lower is better)
Translates to: WPAWWYEAYSSRHLAKICLASRR*AGTRQA
Trigger: AGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAA...GCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GACAGGAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCCAAGCCTCTTGTCTCTaGGGCCTCCTCCTAGGCCAA +
Preference number: 2 (lower is better)
Translates to: DRRTAMSLRLVWATQFLSQASCL*GLLLGQ
Trigger: TTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTG...GGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTCCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGGAGTTTCCCATTGGTTaGTTCCAGGCTTGGGATGTC +
Preference number: 2 (lower is better)
Translates to: VGEWKFYGCYPPHPPSHWEFPIG*FQAWDV
Trigger: GACATCCCAAGCCTGGAAGCAACCAATGGGAAACTC...CCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAAAAGCTAGCTTTGGAAGGGCCTaGGAGGTCAGACAGCCCTGG +
Preference number: 2 (lower is better)
Translates to: HMTTPTCLSLESLYVVKASFGRA*EVRQPW
Trigger: CCAGGGCTGTCTGACCTCTCAGGCCCTTCCAAAGCT...AGCTTTTACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTACAAGCCTCTTGTCTCTaGGGCCTCCTCCTAGGCCAA +
Preference number: 2 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVQASCL*GLLLGQ
Trigger: TTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTG...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAAGCACCCTAGGTTCTTaGAGTGAGGTGTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVSTLGS*SEVWGG
Trigger: CCCTCCCCACACCTCACTTCAAGAACCTAGGGTGCT...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGCCAGCATGGTGGTATaGGGCATACAGCAGCAGACA +
Preference number: 2 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEASMVV*GIQQQT
Trigger: TGTCTGCTGCTGTATGCCTCATACCACCATGCTGGC...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGCCAGCATGGTGGTATaGGGCATACAGCAGCAGACA +
Preference number: 2 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKASMVV*GIQQQT
Trigger: TGTCTGCTGCTGTATGCCTCATACCACCATGCTGGC...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCCAAGTCACTGGCTTTTaGAGGATGCATGTTCCACCC +
Preference number: 2 (lower is better)
Translates to: FGWESGSSMGATHPIHQVQVTGF*RMHVPP
Trigger: GGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTG...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 2 (lower is better)
Translates to: QQQNLLRCLQAQGEEQKAAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...GGCCTTCTGTTCTTCACCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp AATCCCATACCCAATGCAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTACCCAATGCAGCAATaGCCAAGCCTCTTGTCTCTG +
Preference number: 2 (lower is better)
Translates to: NPIPNAAMPKPLVSEASSYPMQQ*PSLLSL
Trigger: CAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTA...GGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTGCCCTCCCCAAGCTTTaGAAGGGCCTGAGAGGTCAG +
Preference number: 2 (lower is better)
Translates to: KVTLKCLKHALCHPRICCALPKL*KGLRGQ
Trigger: CTGACCTCTCAGGCCCTTCCAAAGCTTGGGGAGGGC...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GAGCCTTCCTTGGGCCACCGTCCCTTCTTGAACAATGGGAGTGAAGTTGAAGGCTCAAGATGGCCAGCATaGTGGTATGAGGCATACAGC +
Preference number: 2 (lower is better)
Translates to: EPSLGHRPFLNNGSEVEGSRWPA*WYEAYS
Trigger: GCTGTATGCCTCATACCACCATGCTGGCCATCTTGA...GCCTTCAACTTCACTCCCATTGTTCAAGAAGGGACGGTGGCCCAAGGAAGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGCAGGCTGTGGAAATaGAATGGAACCCACATCTCG +
Preference number: 2 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEGRLWK*NGTHIS
Trigger: CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCC...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp AGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGGGCAGGCTGTGGAAATaGAATGGAACCCACATCTCG +
Preference number: 2 (lower is better)
Translates to: SANKQPTTESTQVPPGPRGRLWK*NGTHIS
Trigger: CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCC...CCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTCTACACAGGAAGCTaGGATCTGTACAACTTCCTA +
Preference number: 2 (lower is better)
Translates to: VGEWKFYGCYPPHPPSHWLYTGS*DLYNFL
Trigger: TAGGAAGTTGTACAGATCCCAGCTTCCTGTGTAGAG...CCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGTTGTCCCTGAGCCTCTaGCAAGTGGGGTCTAACTCT +
Preference number: 2 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQLSLSL*QVGSNS
Trigger: AGAGTTAGACCCCACTTGCCAGAGGCTCAGGGACAA...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GAAGGAAAAGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGAGGCCTAAGGGACTCTaGGAAGAGGGGAGCCCTGGT +
Preference number: 2 (lower is better)
Translates to: EGKVQTNSQQQNLLRCLQRPKGL*EEGSPG
Trigger: ACCAGGGCTCCCCTCTTCCCAGAGTCCCTTAGGCCT...CTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACTTTTCCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGACGAACAGCTAACATTTaGGAGGCTGAGACAGGAGGA +
Preference number: 2 (lower is better)
Translates to: EVLWVLPTPSTKSLAFEGRTANI*EAETGG
Trigger: TCCTCCTGTCTCAGCCTCTCAAATGTTAGCTGTTCG...TCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGCGAACAGCTAACATTTaGGAGGCTGAGACAGGAGGA +
Preference number: 2 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKRTANI*EAETGG
Trigger: TCCTCCTGTCTCAGCCTCTCAAATGTTAGCTGTTCG...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp ATGAGAATGTGCAACTTGTCCCTGAGCCTCTGGCAAGTGGGGTCTAACTCTGAAGCACAAGGCAGGCTGTaGAAATGGAATGGAACCCAC +
Preference number: 2 (lower is better)
Translates to: MRMCNLSLSLWQVGSNSEAQGRL*KWNGTH
Trigger: GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC...TTCAGAGTTAGACCCCACTTGCCAGAGGCTCAGGGACAAGTTGCACATTCTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GACAGGAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTCAAGATGGCCAGCATaGTGGTATGAGGCATACAGC +
Preference number: 2 (lower is better)
Translates to: DRRTAMSLRLVWATQFLSSRWPA*WYEAYS
Trigger: GCTGTATGCCTCATACCACCATGCTGGCCATCTTGA...GGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCATGTGCAACTTGTCCCTaGGCCTCTGGCAAGTGGGGT +
Preference number: 2 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPCATCP*ASGKWG
Trigger: ACCCCACTTGCCAGAGGCTCAGGGACAAGTTGCACA...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTCTACTCTTCAACATaGCGACCTCCATTCTCCCGA +
Preference number: 2 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKFYSST*RPPFSR
Trigger: TCGGGAGAATGGAGGTCGGCATGTTGAAGAGTAGAA...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCCTACCAGCCACATGAGAATGTaGAACTTGTCCCTGAGCCTC +
Preference number: 2 (lower is better)
Translates to: GHEFEASLGYTVLILFPTSHMRM*NLSLSL
Trigger: GAGGCTCAGGGACAAGTTGCACATTCTCATGTGGCT...GGTAGGGAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTGGCAGGCTGTGGAAATaGAATGGAACCCACATCTCG +
Preference number: 2 (lower is better)
Translates to: KVTLKCLKHALCHPRICCGRLWK*NGTHIS
Trigger: CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCC...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCAGCCAGCATGGTGGTATaGGGCATACAGCAGCAGACA +
Preference number: 2 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPASMVV*GIQQQT
Trigger: TGTCTGCTGCTGTATGCCTCATACCACCATGCTGGC...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp ACGCTGCAGATCTTCAGGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCCGAACAGCTAACATTTaGGAGGCTGAGACAGGAGGA +
Preference number: 2 (lower is better)
Translates to: TLQIFRSKNIISLHTCQPRTANI*EAETGG
Trigger: TCCTCCTGTCTCAGCCTCTCAAATGTTAGCTGTTCG...GGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACCTGAAGATCTGCAGCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCTTCTACTCTTCAACATaGCGACCTCCATTCTCCCGA +
Preference number: 2 (lower is better)
Translates to: EDGHEFEASLGYTVLILFFYSST*RPPFSR
Trigger: TCGGGAGAATGGAGGTCGGCATGTTGAAGAGTAGAA...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTTTCTACTCTTCAACATaGCGACCTCCATTCTCCCGA +
Preference number: 2 (lower is better)
Translates to: KVTLKCLKHALCHPRICCFYSST*RPPFSR
Trigger: TCGGGAGAATGGAGGTCGGCATGTTGAAGAGTAGAA...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCACGTCTGCAGTTCATAAAAGTGTCTGAAGCATaGCCTGTGTCACCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: GPKILSACTHVSPRLQFIKVSEA*PVSPQD
Trigger: ATCCTGGGGTGACACAGGGCATGCTTCAGACACTTT...TATGAACTGCAGACGTGGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGAAAAATATTATCAGCCTaGACACATGTCAGCCCACGT +
Preference number: 2 (lower is better)
Translates to: EVLWVLPTPSTKSLAFEGKILSA*THVSPR
Trigger: ACGTGGGCTGACATGTGTGCAGGCTGATAATATTTT...TCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp AGTTTTTCTTCTCCCCATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGTCCTCCCCCAGAACATaGGTGGACAAAGGGGAGAAA +
Preference number: 2 (lower is better)
Translates to: SFSSPHKSRVVPIVEGKGSSPRT*VDKGEK
Trigger: TTTCTCCCCTTTGTCCACCCATGTTCTGGGGGAGGA...CCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATGGGGAGAAGAAAAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CAA 90 bp AGAAGCGAGTCCCGCAGGTGTATCTCAACCAGGTTTTTATTGTTCTaGCAACTGCAAACTACACAGATGTCTGAAAGGAAGGCGTGTCCT +
Preference number: 2 (lower is better)
Translates to: RSESRRCISTRFLLF*QLQTTQMSERKACP
Trigger: AGGACACGCCTTCCTTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACCTGCGGGACTCGCTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
3UTR CAA 90 bp AACCTGAGAAGCGAGTCCCGCAGGTGTATCTCAACCAGGTTTTTATaGTTCTTGCAACTGCAAACTACACAGATGTCTGAAAGGAAGGCG +
Preference number: 2 (lower is better)
Translates to: NLRSESRRCISTRFL*FLQLQTTQMSERKA
Trigger: CGCCTTCCTTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACCTGCGGGACTCGCTTCTCAGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
3UTR-3UTR TCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTTCTCTTGATGTATTaGCTTAGGCTGGTCACACAT +
Preference number: 2 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKFLLMY*LRLVTH
Trigger: ATGTGTGACCAGCCTAAGTCAATACATCAAGAGAAA...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAAAAGCTGGTGTTCACAGAATGTaGAATCACATTGGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: HMTTPTCLSLESLYVVKAGVHRM*NHIGQS
Trigger: GCTTTGCCCAATGTGATTTCACATTCTGTGAACACC...AGCTTTTACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCAAAATATTATCAGCCTaGACACATGTCAGCCCACGT +
Preference number: 2 (lower is better)
Translates to: EDGHEFEASLGYTVLILFKILSA*THVSPR
Trigger: ACGTGGGCTGACATGTGTGCAGGCTGATAATATTTT...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp AAGACAAAGACATTAGCGCTACTTTTCAACCCATGCAAAAATGTCGCCAATGCCGCACAAGGCAGGCTGTaGAAATGGAATGGAACCCAC +
Preference number: 2 (lower is better)
Translates to: KTKTLALLFNPCKNVANAAQGRL*KWNGTH
Trigger: GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC...GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp TGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATTGACTGCCCTCCCCAAGCTTTaGAAGGGCCTGAGAGGTCAG +
Preference number: 2 (lower is better)
Translates to: CSQNVKSHWAKLSLDVLTALPKL*KGLRGQ
Trigger: CTGACCTCTCAGGCCCTTCCAAAGCTTGGGGAGGGC...AGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GATCTTATTCATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTAGGCCTAAGGGACTCTaGGAAGAGGGGAGCCCTGGT +
Preference number: 2 (lower is better)
Translates to: DLIHRCSQNVKSHWAKLSRPKGL*EEGSPG
Trigger: ACCAGGGCTCCCCTCTTCCCAGAGTCCCTTAGGCCT...AGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATGAATAAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAAAGCACCCTAGGTTCTTaGAGTGAGGTGTGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKSTLGS*SEVWGG
Trigger: CCCTCCCCACACCTCACTTCAAGAACCTAGGGTGCT...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCTATCTATATCCTGGTaGACCACAGATATAAAGGGT +
Preference number: 2 (lower is better)
Translates to: EDGHEFEASLGYTVLILFLSISW*TTDIKG
Trigger: ACCCTTTATATCTGTGGTTCACCAGGATATAGATAG...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp TGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTTGCAAAGCTTCTTCCTAGGTCTGGCTTTTGAAGGATaGATGTTCCACCCGCATCAA +
Preference number: 2 (lower is better)
Translates to: CLKGRRVLLKSLQSFFLGLAFEG*MFHPHQ
Trigger: TTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAG...ACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GTTGTAAAAGCTGGTTCTATAACCATAAAATGGATATGGTCAGGAGGAAGCATCCCCCCAGAACATGGGTaGACAAAGGGGAGAAACAGG +
Preference number: 2 (lower is better)
Translates to: VVKAGSITIKWIWSGGSIPPEHG*TKGRNR
Trigger: CCTGTTTCTCCCCTTTGTCCACCCATGTTCTGGGGG...GATGCTTCCTCCTGACCATATCCATTTTATGGTTATAGAACCAGCTTTTACAAC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGTCCAAGTCTTCAGATaGAGATATCTATCATCTATC +
Preference number: 2 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKVQVFR*RYLSSI
Trigger: GATAGATGATAGATATCTCCATCTGAAGACTTGGAC...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp CACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAAAAGCTAGTTTGAGGCTAGTTTaGGCTACACAGTTCTTATCC +
Preference number: 2 (lower is better)
Translates to: HMTTPTCLSLESLYVVKASLRLV*ATQFLS
Trigger: GGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACT...AGCTTTTACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp GCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCCTACCCACCATAAAATGGATATaGTCAGGAGGAAGCATCGAA +
Preference number: 2 (lower is better)
Translates to: AMSLRLVWATQFLSCSLPTIKWI*SGGSIE
Trigger: TTCGATGCTTCCTCCTGACCATATCCATTTTATGGT...GGGTAGGGAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCAGGTGTTCACAGAATGTaGAATCACATTGGGCAAAGC +
Preference number: 2 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPGVHRM*NHIGQS
Trigger: GCTTTGCCCAATGTGATTTCACATTCTGTGAACACC...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp AAGACAAAGACATTAGCGCTACTTTTCAACCCATGCAAAAATGTCGCCAATGCCTTCTACTCTTCAACATaGCGACCTCCATTCTCCCGA +
Preference number: 2 (lower is better)
Translates to: KTKTLALLFNPCKNVANAFYSST*RPPFSR
Trigger: TCGGGAGAATGGAGGTCGGCATGTTGAAGAGTAGAA...GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCACTCTACACAGGAAGCTaGGATCTGTACAACTTCCTA +
Preference number: 2 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPLYTGS*DLYNFL
Trigger: TAGGAAGTTGTACAGATCCCAGCTTCCTGTGTAGAG...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR TCA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCAGCTGGGCCAAATGTTTaGGTAGTTAGCTATGAAAAC +
Preference number: 2 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPAGPNV*VVSYEN
Trigger: GTTTTCATAGCTAACTACTCAAACATTTGGCCCAGC...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAATACCCAATGCAGCAATaGCCAAGCCTCTTGTCTCTG +
Preference number: 2 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKYPMQQ*PSLLSL
Trigger: CAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTA...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR GCA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAACTACTTTTCAACCCATaGAAAAATGTCGCCAATGCC +
Preference number: 2 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKLLFNP*KNVANA
Trigger: GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAG...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CCA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAATTTTGCTGTTTTGGGTaGGAGAGTGGAAGTTCTATG +
Preference number: 2 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKFCCFG*ESGSSM
Trigger: CATAGAACTTCCACTCTCCCACCCAAAACAGCAAAA...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TCCGGGAGCTCTTCATGTTTTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGCAGCTTGGCAGGGCAG +
Preference number: 3 (lower is better)
Translates to: SGSSSCFVRAAA*ALPGAGSLAGQ
Trigger: CTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAACATGAAGAGCTCCCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
3UTR CCA 72 bp GACAAGCCTGGAGGCCTGGGCTCAATCTCTGGAGGCTaGGAGAGATGGACTCCTGTCAAGCTGTCCTCTGAC +
Preference number: 3 (lower is better)
Translates to: DKPGGLGSISGG*ERWTPVKLSSD
Trigger: GTCAGAGGACAGCTTGACAGGAGTCCATCTCTCCCAGCCTCCAGAGATTGAGCCCAGGCCTCCAGGCTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR GCA 72 bp CCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGATaGATGTTCCACCCGCATCAAGATCTCCTGGGCCTG +
Preference number: 3 (lower is better)
Translates to: PTPSTKSLAFEG*MFHPHQDLLGL
Trigger: CAGGCCCAGGAGATCTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TCCATTCTCCCGAGTCCAGAAGTCCTTGCGATCACTTaGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTG +
Preference number: 3 (lower is better)
Translates to: SILPSPEVLAIT*PREDEQAQGRL
Trigger: CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGACTCGGGAGAATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp CAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTaGCCAAAATATGCGGACAGCTCTGAGCAGGCGGCC +
Preference number: 3 (lower is better)
Translates to: QHGGMRHTAADT*PKYADSSEQAA
Trigger: GGCCGCCTGCTCAGAGCTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp CCCTACATGTGTGAACCCCCGTGCACATGTATGAGCTaGCACACACACACTGATGCGCACGCACACACACAC +
Preference number: 3 (lower is better)
Translates to: PYMCEPPCTCMS*HTHTDAHAHTH
Trigger: GTGTGTGTGTGCGTGCGCATCAGTGTGTGTGTGCCAGCTCATACATGTGCACGGGGGTTCACACATGTAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR GCA 72 bp TCCTCAGGAGGAGAAATCCCATACCCAATGCAGCAATaGCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGG +
Preference number: 3 (lower is better)
Translates to: SSGGEIPYPMQQ*PSLLSLRPPPR
Trigger: CCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATTTCTCCTCCTGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TTCTACACTGGGGGTGACTCCTCAAGATGGCCAGCATaGTGGTATGAGGCATACAGCAGCAGACACTTGGCC +
Preference number: 3 (lower is better)
Translates to: FYTGGDSSRWPA*WYEAYSSRHLA
Trigger: GGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCCAGTGTAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TTGACTCAAGTAAAGGCACTGACAAGCCTGGAGGCCTaGGCTCAATCTCTGGAGGCTGGGAGAGATGGACTC +
Preference number: 3 (lower is better)
Translates to: LTQVKALTSLEA*AQSLEAGRDGL
Trigger: GAGTCCATCTCTCCCAGCCTCCAGAGATTGAGCCCAGGCCTCCAGGCTTGTCAGTGCCTTTACTTGAGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR-3UTR CAA 90 bp GGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGATGCATGTTCCGGCCACCGTCCCTTCTaGAACAATGGGAGTGAAGTT +
Preference number: 3 (lower is better)
Translates to: GCYPPHPPSHWLLKDACSGHRPF*NNGSEV
Trigger: AACTTCACTCCCATTGTTCAAGAAGGGACGGTGGCC...GGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CAA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 3 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
3UTR TCA 72 bp TCCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATaGGCAGGCACAAGGCAGGCTGTGGAAATGGAATGG +
Preference number: 3 (lower is better)
Translates to: SRSPCDHLASRR*AGTRQAVEMEW
Trigger: CCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp GGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTaGAGGATGCATGTTCCACCCGCATCAAGATCTCCT +
Preference number: 3 (lower is better)
Translates to: GATHPIHQVTGF*RMHVPPASRSP
Trigger: AGGAGATCTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp CCTGACATGAGCCTTCCTTGGGCCACCGTCCCTTCTTaGACAATGGGAGTGAAGTTGAAGGCTCTTAGACTC +
Preference number: 3 (lower is better)
Translates to: PDMSLPWATVPS*TMGVKLKALRL
Trigger: GAGTCTAAGAGCCTTCAACTTCACTCCCATTGTTCAAGAAGGGACGGTGGCCCAAGGAAGGCTCATGTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp CGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATaGAATGGAACCCACATCTCGGCTTTAGTGCTTCTG +
Preference number: 3 (lower is better)
Translates to: REDEQAQGRLWK*NGTHISALVLL
Trigger: CAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
3UTR CCA 72 bp AGCCACATGAGAATGTGCAACTTGTCCCTGAGCCTCTaGCAAGTGGGGTCTAACTCTGAATCTCAGGGTTCC +
Preference number: 3 (lower is better)
Translates to: SHMRMCNLSLSL*QVGSNSESQGS
Trigger: GGAACCCTGAGATTCAGAGTTAGACCCCACTTGCCAGAGGCTCAGGGACAAGTTGCACATTCTCATGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp AGGATGCTTTTCTACACTGGGGGTGACTCCTCAAGATaGCCAGCATGGTGGTATGAGGCATACAGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: RMLFYTGGDSSR*PAWWYEAYSSR
Trigger: TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCCAGTGTAGAAAAGCATCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTaGCTTTTGAAGGATGCATGTTCCACCCGCATCAAG +
Preference number: 3 (lower is better)
Translates to: FYGCYPPHPPSH*LLKDACSTRIK
Trigger: CTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CAA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGATGAGAATGTGCAACTaGTCCCTGAGCCTCTGGCAA +
Preference number: 3 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQMRMCN*SLSLWQ
Trigger: TTGCCAGAGGCTCAGGGACAAGTTGCACATTCTCAT...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp AACTTCCTAGTTGTCTTTGCCACCCCAACATTTCAGTaGGGGGAAGGGCTTCTACTCTTCAACATGCCGACC +
Preference number: 3 (lower is better)
Translates to: NFLVVFATPTFQ*GEGLLLFNMPT
Trigger: GGTCGGCATGTTGAAGAGTAGAAGCCCTTCCCCCCACTGAAATGTTGGGGTGGCAAAGACAACTAGGAAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp CCTAGGACTCCCAGGAAGGAAGCAGAAAGTAAAGAGTaGCCTTCGGCCCTAGTTGTGCAGCATCGTCATAAA +
Preference number: 3 (lower is better)
Translates to: PRTPRKEAESKE*PSALVVQHRHK
Trigger: TTTATGACGATGCTGCACAACTAGGGCCGAAGGTCACTCTTTACTTTCTGCTTCCTTCCTGGGAGTCCTAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp ACATTTAGGTACAAAGCCATAGTACCAGGCGTGGTGTaGTGGTGGCTCATGCTTATAACCCGAACAGCTAAC +
Preference number: 3 (lower is better)
Translates to: TFRYKAIVPGVV*WWLMLITRTAN
Trigger: GTTAGCTGTTCGGGTTATAAGCATGAGCCACCACCACACCACGCCTGGTACTATGGCTTTGTACCTAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CAA 90 bp GAAGGAAAAGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGATGAGAATGTGCAACTaGTCCCTGAGCCTCTGGCAA +
Preference number: 3 (lower is better)
Translates to: EGKVQTNSQQQNLLRCLQMRMCN*SLSLWQ
Trigger: TTGCCAGAGGCTCAGGGACAAGTTGCACATTCTCAT...CTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACTTTTCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CAA 90 bp AGTTTTTCTTCTCCCCATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGATGAGAATGTGCAACTaGTCCCTGAGCCTCTGGCAA +
Preference number: 3 (lower is better)
Translates to: SFSSPHKSRVVPIVEGKGMRMCN*SLSLWQ
Trigger: TTGCCAGAGGCTCAGGGACAAGTTGCACATTCTCAT...CCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATGGGGAGAAGAAAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR-3UTR CAA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTTTATTTTGCTGTTTaGGGTGGGAGAGTGGAAGTT +
Preference number: 3 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKFYFAV*GGRVEV
Trigger: AACTTCCACTCTCCCACCCAAAACAGCAAAATAAAA...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp TTTAGGTACAAAGCCATAGTACCAGGCGTGGTGTGGTaGTGGCTCATGCTTATAACCCGAACAGCTAACATT +
Preference number: 3 (lower is better)
Translates to: FRYKAIVPGVVW*WLMLITRTANI
Trigger: AATGTTAGCTGTTCGGGTTATAAGCATGAGCCACCACCACACCACGCCTGGTACTATGGCTTTGTACCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 72 bp CGCTGCAGATCTTCAGGTCCAAAAATATTATCAGCCTaGACACATGTCAGCCCACGTCTGCAGTTCATATAT +
Preference number: 3 (lower is better)
Translates to: RCRSSGPKILSA*THVSPRLQFIY
Trigger: ATATATGAACTGCAGACGTGGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACCTGAAGATCTGCAGCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 72 bp ATGCGCACGCACACACACACACAACCACGCACTAAATaGTTAGAAAGAAAACTGACACTTGTTCTCCGCAAA +
Preference number: 3 (lower is better)
Translates to: MRTHTHTQPRTK*LERKLTLVLRK
Trigger: TTTGCGGAGAACAAGTGTCAGTTTTCTTTCTAAGCATTTAGTGCGTGGTTGTGTGTGTGTGTGCGTGCGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR GCA 72 bp AGGAAGACAAAGACATTAGCGCTACTTTTCAACCCATaGAAAAATGTCGCCAATGCCATAAAGCCGACAAGG +
Preference number: 3 (lower is better)
Translates to: RKTKTLALLFNP*KNVANAIKPTR
Trigger: CCTTGTCGGCTTTATGGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 72 bp CCCGCAGGTGTATCTCAACCAGGTTTTTATTGTTCTTaGAACTGCAAACTACACAGATGTCTGAAAGGAAGG +
Preference number: 3 (lower is better)
Translates to: PAGVSQPGFYCS*NCKLHRCLKGR
Trigger: CCTTCCTTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACCTGCGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
3UTR TCA 72 bp ACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTaGTGTATTGACTTAGGCTGGTCACACATGACCACC +
Preference number: 3 (lower is better)
Translates to: TECEITLGKAFS*CIDLGWSHMTT
Trigger: GGTGGTCATGTGTGACCAGCCTAAGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR GCA 72 bp GGTGTATCTCAACCAGGTTTTTATTGTTCTTGCAACTaGAAACTACACAGATGTCTGAAAGGAAGGCGTGTC +
Preference number: 3 (lower is better)
Translates to: GVSQPGFYCSCN*KLHRCLKGRRV
Trigger: GACACGCCTTCCTTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
3UTR GCA 72 bp AGGAAGGAAGGAAGGAAGGAAAGAAAGAAGGAAAAGTaGAAACAAACAGCCAACAACAGAATCTACTCAGGT +
Preference number: 3 (lower is better)
Translates to: RKEGRKERKKEK*KQTANNRIYSG
Trigger: ACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACTTTTCCTTCTTTCTTTCCTTCCTTCCTTCCTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp ATCTATCTTTCTATCTATCATCTATCTATATCCTGGTaGACCACAGATATAAAGGGTAGTGGGCTGGGCCAA +
Preference number: 3 (lower is better)
Translates to: IYLSIYHLSISW*TTDIKGSGLGQ
Trigger: TTGGCCCAGCCCACTACCCTTTATATCTGTGGTTCACCAGGATATAGATAGATGATAGATAGAAAGATAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp CTGGGCCTGATCTTATTCATAGGTGTTCACAGAATGTaGAATCACATTGGGCAAAGCTTTCTCTTGATGTAT +
Preference number: 3 (lower is better)
Translates to: LGLILFIGVHRM*NHIGQSFLLMY
Trigger: ATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATGAATAAGATCAGGCCCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR TCA 72 bp ATAAATCTCAATAAAAGACCCTGTGGTCCAGTAAAATaGTTGACTCAAGTAAAGGCACTGACAAGCCTGGAG +
Preference number: 3 (lower is better)
Translates to: INLNKRPCGPVK*LTQVKALTSLE
Trigger: CTCCAGGCTTGTCAGTGCCTTTACTTGAGTCAATCATTTTACTGGACCACAGGGTCTTTTATTGAGATTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192949.6
3UTR CCA 72 bp GTTGTAAAAGCTGGTTCTATAACCATAAAATGGATATaGTCAGGAGGAAGCATCGAAGAAACCACATTTAGG +
Preference number: 3 (lower is better)
Translates to: VVKAGSITIKWI*SGGSIEETTFR
Trigger: CCTAAATGTGGTTTCTTCGATGCTTCCTCCTGACCATATCCATTTTATGGTTATAGAACCAGCTTTTACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CCA 72 bp CTCTATGTTGTAAAAGCTGGTTCTATAACCATAAAATaGATATGGTCAGGAGGAAGCATCGAAGAAACCACA +
Preference number: 3 (lower is better)
Translates to: LYVVKAGSITIK*IWSGGSIEETT
Trigger: TGTGGTTTCTTCGATGCTTCCTCCTGACCATATCCATTTTATGGTTATAGAACCAGCTTTTACAACATAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGGGTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWGCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACC...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GGGGGTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGAGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: GGDSSRWPAWWYEAYSSRVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp GCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGTTTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: ASRPKVKNRRPKGLWEEGFCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAA...CCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp TGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: WPREDEQAQGRLWKWNGTVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...GGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: AGTRQAVEMEWNPHLGFSVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...ACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QAQGRLWKWNGTHISALVVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp AAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: KWNGTHISALVLLGRVGTVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...GGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp TGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATC +
Preference number: 4 (lower is better)
Translates to: WNGTHISALVLLGRVGTAGNEGR*STGTQI
Trigger: GATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCC...AGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTGGTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: AQGRLWKWNGTHISALVLGCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACC...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp GCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCCTACCCGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: AMSLRLVWATQFLSCSLPVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...GGGTAGGGAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp ACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: TRQAVEMEWNPHLGFSASGCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACC...AGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp ACCGCTCCGGGAGCTCTTCATGTTTTGTCCGGGCAGCTGCGTGGGCACTTCCGGGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: TAPGALHVLSGQLRGHFRVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...CCGGAAGTGCCCACGCAGCTGCCCGGACAAAACATGAAGAGCTCCCGGAGCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp TCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: SRPKVKNRRPKGLWEEGSRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...GCTCCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKFCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAA...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: NPHLGFSASGKSRHRSGSMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...GCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: EVLAITWPREDEQAQGRLAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: PEVLAITWPREDEQAQGRAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GCTGACACTGCTGAGTTTCCCATTGGTTGCTTCCAGGCTTGGGATGTCCCGTCCGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: ADTAEFPIGCFQAWDVPSGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...GGACGGGACATCCCAAGCCTGGAAGCAACCAATGGGAAACTCAGCAGTGTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCCTTCTTTGCATCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPLLCIL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGATGCAAAGAAG...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCCAAAGAGCAGCCTGGTaGGTCACCTTGGAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: NPHLGFSASGKSRHRSGSQRAAW*VTLEGF
Trigger: AAAACCTTCCAAGGTGACTCACCAGGCTGCTCTTTG...GCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: PEVLAITWPREDEQAQGRRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp GGAGTGAAGTTGAAGGCTCTTAGACTCCCCATCTTAAAGACACCCCAACTCCTCTTTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: GVKLKALRLPILKTPQLLFCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAAAA...GAGGAGTTGGGGTGTCTTTAAGATGGGGAGTCTAAGAGCCTTCAACTTCACTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAAAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAAACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGATGCATGTTCCACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: GCYPPHPPSHWLLKDACSTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...GGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: DEQAQGRLWKWNGTHISATSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: EVLAITWPREDEQAQGRLPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAAGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
3UTR CAA 72 bp ACATGCCGACCTCCATTCTCCCGAGTCCAGAAGTCCTaGCGATCACTTGGCCTCGAGAAGATGAGCAGGCAC +
Preference number: 4 (lower is better)
Translates to: TCRPPFSRVQKS*RSLGLEKMSRH
Trigger: GTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGACTCGGGAGAATGGAGGTCGGCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
3UTR CAA 72 bp TTGGTGGGCTCGGGACTGGCTAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTAGGTCCCTTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: LVGSGLASGVTL*RLMSGLGPFFA
Trigger: TGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCACTAGCCAGTCCCGAGCCCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATC +
Preference number: 4 (lower is better)
Translates to: KVTLKCLKHALCHPRICCGNEGR*STGTQI
Trigger: GATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCC...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
CDS-3UTR TCA 90 bp GCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: ASRPKVKNRRPKGLWEEGLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...CCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: NPHLGFSASGKSRHRSGSLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...GCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GTCCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: VQKSLRSLGLEKMSRHKAGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...TGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CTGTTGTCCCCTGAGCTGGGGAAGAGAGGATCCCTAGGACTCCCAGGAAGGAAGCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: LLSPELGKRGSLGLPGRKQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...CTTCCTTCCTGGGAGTCCTAGGGATCCTCTCTTCCCCAGCTCAGGGGACAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp TGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATAAAAGCCCTTCTTTGCATCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: CPSLLSLRPPPRPRCIKALLCIL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGATGCAAAGAAG...GGCTTTTATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGTATTTTGACAGCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: VGEWKFYGCYPPHPPSHWYFDSL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGCTGTCAAAATA...CCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179584.8
CDS-3UTR TCA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCTATTTTGACAGCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPYFDSL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGCTGTCAAAATA...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp CATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCACCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: HLGFSASGKSRHRSGSSSPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...TGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CTGTTGTCCCCTGAGCTGGGGAAGAGAGGATCCCTAGGACTCCCAGGAAGGAAGCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: LLSPELGKRGSLGLPGRKPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...CTTCCTTCCTGGGAGTCCTAGGGATCCTCTCTTCCCCAGCTCAGGGGACAACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp AATCCCATACCCAATGCAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: NPIPNAAMPKPLVSEASSRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...GGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAACGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGATGCATGTTCCCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: GCYPPHPPSHWLLKDACSRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...GGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: DEQAQGRLWKWNGTHISAHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: QAQGRLWKWNGTHISALVSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: ASRPKVKNRRPKGLWEEGYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: KMSRHKAGCGNGMEPTSRTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...CCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: RQAVEMEWNPHLGFSASGTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...CCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PEVLAITWPREDEQAQGRYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGACCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: REDEQAQGRLWKWNGTHIAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...GATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
3UTR CAA 72 bp GGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTaGAAGGATGCATGTTCCACCCGCATCAAGATCTCC +
Preference number: 4 (lower is better)
Translates to: GCYPPHPPSHWL*KDACSTRIKIS
Trigger: GGAGATCTTGATGCGGGTGGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACTTCTTTGCATCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: LGLEKMSRHKAGCGNGMELLCIL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGATGCAAAGAAG...TTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAAGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp GGGGGTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: GGDSSRWPAWWYEAYSSRWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACACGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: LEKMSRHKAGCGNGMEPTRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...TGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: GTRQAVEMEWNPHLGFSAHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...AGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp GTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: VTPQDGQHGGMRHTAADTHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...AGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGGTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEGCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGCCTTGGAAGGTTTTCTaGATGATGTTGGAGGCCACA +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWPWKVF*MMLEAT
Trigger: TGTGGCCTCCAACATCATGCAGAAAACCTTCCAAGG...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TCTAGAACTATAGCCCTCCCCAAGCTTTGGAAGGGCCTGAGAGGTCAGACAGCCCATCACAATCACGGTTaGGGAGTTGGTCAGCTTCGG +
Preference number: 4 (lower is better)
Translates to: SRTIALPKLWKGLRGQTAHHNHG*GVGQLR
Trigger: CCGAAGCTGACCAACTCCCCAACCGTGATTGTGATG...GGCTGTCTGACCTCTCAGGCCCTTCCAAAGCTTGGGGAGGGCTATAGTTCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGAAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: EVLWVLPTPSTKSLAFEGSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...TCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: WPAWWYEAYSSRHLAKICSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...GCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: VLAITWPREDEQAQGRLWYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: WPREDEQAQGRLWKWNGTYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...GGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGATACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GTRQAVEMEWNPHLGFSAPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...AGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: AGTRQAVEMEWNPHLGFSPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...ACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp TGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: WKWNGTHISALVLLGRVGGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...GCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGACAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GTRQAVEMEWNPHLGFSAAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...AGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTGCTCTTCATGTTCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSALHVL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGAACATGAAGAGC...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183869.8
CDS-3UTR GCA 90 bp GTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCATGTTCTTTCCCAGGGTGGCATCAAAAACTaGAATCTGTCCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: VLLGRVGTAPGALHVLSQGGIKN*NLSTFL
Trigger: AAGGAAGGTGGACAGATTGCAGTTTTTGATGCCACC...CTGGGAAAGAACATGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp AATCCCATACCCAATGCAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: NPIPNAAMPKPLVSEASSPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...GGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATT
53% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp AGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: SANKQPTTESTQVPPGPRHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...CCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGGTTGTCCGGGCAGCTaGGTGGGCACTTCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKGCPGS*VGTSGG
Trigger: GCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACC...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp GGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCATGTTCTGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTC +
Preference number: 4 (lower is better)
Translates to: GFSASGKSRHRSGSSSCSVRSLL*ILFCGL
Trigger: GAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAAC...AGAACATGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: EDGHEFEASLGYTVLILFTSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GTRQAVEMEWNPHLGFSAYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...AGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LEKMSRHKAGCGNGMEPTYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...TGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTTGTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: DSSRWPAWWYEAYSSRHLYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...CAAGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: LRSLGLEKMSRHKAGCGNMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...ATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: RQAVEMEWNPHLGFSASGMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...CCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: SRPKVKNRRPKGLWEEGSSFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...GCTCCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIVRAAA*ALPGAG
Trigger: GCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGAC...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
3UTR CAA 72 bp GAAATCCCATACCCAATGCAGCAATGCCCAAGCCTCTaGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATA +
Preference number: 4 (lower is better)
Translates to: EIPYPMQQCPSL*SLRPPPRPRCI
Trigger: TATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGGGATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATC +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEGNEGR*STGTQI
Trigger: GATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGATTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: DEQAQGRLWKWNGTHISAVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: REDEQAQGRLWKWNGTHIQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...GATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp CTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: LGLEKMSRHKAGCGNGMEQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...TTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: EMEWNPHLGFSASGKSRHAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...GTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SANKQPTTESTQVPPGPRAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...CCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGGAAGGTTTTCTGCATaGTGTTGGAGGCCACAACAG +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISGRFSA*CWRPQQ
Trigger: CTGTTGTGGCCTCCAACATCATGCAGAAAACCTTCC...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp AGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGTGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: RQAVEMEWNPHLGFSASGWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...CCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: LEKMSRHKAGCGNGMEPTWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp ACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: TWPREDEQAQGRLWKWNGWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: LGLEKMSRHKAGCGNGMEWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: REDEQAQGRLWKWNGTHIPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...GATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTC +
Preference number: 4 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHVRSLL*ILFCGL
Trigger: GAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAAC...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTC +
Preference number: 4 (lower is better)
Translates to: FGWESGSSMGATHPIHQVVRSLL*ILFCGL
Trigger: GAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAAC...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179584.8
CDS-3UTR CCA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCATCACAATCACGGTTaGGGAGTTGGTCAGCTTCGG +
Preference number: 4 (lower is better)
Translates to: AQGRLWKWNGTHISALVLHHNHG*GVGQLR
Trigger: CCGAAGCTGACCAACTCCCCAACCGTGATTGTGATG...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCATCACAATCACGGTTaGGGAGTTGGTCAGCTTCGG +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSHHNHG*GVGQLR
Trigger: CCGAAGCTGACCAACTCCCCAACCGTGATTGTGATG...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: LRSLGLEKMSRHKAGCGNVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...ATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTCCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: VQKSLRSLGLEKMSRHKARTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: LAITWPREDEQAQGRLWKRTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: PEVLAITWPREDEQAQGRSFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCCTGGTGAGTCACCTTaGAAGGTTTTCTGCATGATG +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCPGESP*KVFCMM
Trigger: CATCATGCAGAAAACCTTCCAAGGTGACTCACCAGG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGATTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: GRLWKWNGTHISALVLLGLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...TCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: QQQNLLRCLQAQGEEQKALSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...GGCCTTCTGTTCTTCACCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: KMSRHKAGCGNGMEPTSRVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...CCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp TCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: SRPKVKNRRPKGLWEEGSNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...GCTCCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: DEQAQGRLWKWNGTHISAQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: KVTLKCLKHALCHPRICCGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp ACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: TRQAVEMEWNPHLGFSASAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...AGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp CTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCTATTTTGACAGCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: LWKWNGTHISALVLLGRVYFDSL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGCTGTCAAAATA...GACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGTGGCATCAAAAACTaGAATCTGTCCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCGGIKN*NLSTFL
Trigger: AAGGAAGGTGGACAGATTGCAGTTTTTGATGCCACC...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTTGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: KVTLKCLKHALCHPRICCHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCATCACAATCACGGTTaGGGAGTTGGTCAGCTTCGG +
Preference number: 4 (lower is better)
Translates to: AVEMEWNPHLGFSASGKSHHNHG*GVGQLR
Trigger: CCGAAGCTGACCAACTCCCCAACCGTGATTGTGATG...ACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: WKWNGTHISALVLLGRVGVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...GCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: EMEWNPHLGFSASGKSRHVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...GTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: QAQGRLWKWNGTHISALVYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: RQAVEMEWNPHLGFSASGYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: LGLEKMSRHKAGCGNGMERTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTCGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: AGTRQAVEMEWNPHLGFSRTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...ACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: DEQAQGRLWKWNGTHISASFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGSFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp GCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCATGTTCTTAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: ALVLLGRVGTAPGALHVLSFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...AAGAACATGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp GTCCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: VQKSLRSLGLEKMSRHKASFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...TGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATC +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEGNEGR*STGTQI
Trigger: GATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCC...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: EMEWNPHLGFSASGKSRHLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...GTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: VEVLWVLPTPSTKSLAFEVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...TTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: SANKQPTTESTQVPPGPRVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...CCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: PEVLAITWPREDEQAQGRNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CCATACCCAATGCAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: PYPMQQCPSLLSLRPPPRNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...CCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: RQETKWANKQALSASNRIGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp AGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGACAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: RLWKWNGTHISALVLLGRQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...TCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR GCA 90 bp GCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: AVEMEWNPHLGFSASGKSPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...ACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CCATACCCAATGCAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: PYPMQQCPSLLSLRPPPRIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...CCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTGCATTGGGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: AITWPREDEQAQGRLWKWIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: KWNGTHISALVLLGRVGTYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...GGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GCATGGTGGTATGAGGCATACAGCAGCAGACACTTGGCCAAAATATGCGGACAGCGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: AWWYEAYSSRHLAKICGQRTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...CTGTCCGCATATTTTGGCCAAGTGTCTGCTGCTGTATGCCTCATACCACCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GATCTTATTCATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATC +
Preference number: 4 (lower is better)
Translates to: DLIHRCSQNVKSHWAKLSGNEGR*STGTQI
Trigger: GATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCC...AGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATGAATAAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
CDS-3UTR TCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: EDGHEFEASLGYTVLILFVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: LWKWNGTHISALVLLGRVVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...GACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AAGGTGACTTTAAAGTGTCTGAAGCATGCCCTGTGTCACCCCAGGATCTGTTGTCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: KVTLKCLKHALCHPRICCQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...ACAACAGATCCTGGGGTGACACAGGGCATGCTTCAGACACTTTAAAGTCACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTGGTGGCATCAAAAACTaGAATCTGTCCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: AQGRLWKWNGTHISALVLGGIKN*NLSTFL
Trigger: AAGGAAGGTGGACAGATTGCAGTTTTTGATGCCACC...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp TGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTTGCAAAGCTTCTTCCTAGGTCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: CLKGRRVLLKSLQSFFLGHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...ACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGGAGATTTTAACTTCCTaGAACACCAAAGAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: QAQGRLWKWNGTHISALVEILTS*NTKEQP
Trigger: AGGCTGCTCTTTGGTGTTGCAGGAAGTTAAAATCTC...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: FGWESGSSMGATHPIHQVIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp ACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: TRQAVEMEWNPHLGFSASYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...AGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: EDGHEFEASLGYTVLILFYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIETSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: RQETKWANKQALSASNRIYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp AGTTTTTCTTCTCCCCATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: SFSSPHKSRVVPIVEGKGPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...CCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATGGGGAGAAGAAAAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: EMEWNPHLGFSASGKSRHSFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...GTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: GRLWKWNGTHISALVLLGNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...TCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACAAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: LEKMSRHKAGCGNGMEPTNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...TGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCCTACCCCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: AMSLRLVWATQFLSCSLPQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...GGGTAGGGAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: AVEMEWNPHLGFSASGKSQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...ACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR TCA 90 bp GGAGTGAAGTTGAAGGCTCTTAGACTCCCCATCTTAAAGACACCCCAACTCCTCCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: GVKLKALRLPILKTPQLLQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...GAGGAGTTGGGGTGTCTTTAAGATGGGGAGTCTAAGAGCCTTCAACTTCACTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGGCGCTCTAATTCCATaGTCACAGGCTCCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEGALIP*SQAPGV
Trigger: AACGCCTGGAGCCTGTGATCATGGAATTAGAGCGCC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTTGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: RQETKWANKQALSASNRIWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTCGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKSLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp GTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGACACTATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: VTPQDGQHGGMRHTAADTIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...AGTGTCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: RQETKWANKQALSASNRIVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTTGCAAAGCTTCTTCCTAGGTATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: CLKGRRVLLKSLQSFFLGMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...ACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGCAGGGCAGCAGAAGTaGAAGCCACACGCTCCTCAA +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKAGQQK*KPHAPQ
Trigger: TTGAGGAGCGTGTGGCTTCCACTTCTGCTGCCCTGC...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCACGTCTGCAGTTCATATTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: GPKILSACTHVSPRLQFILSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...TATGAACTGCAGACGTGGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp ACGCTGCAGATCTTCAGGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: TLQIFRSKNIISLHTCQPQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...GGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACCTGAAGATCTGCAGCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCTTCTTTGCATCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKLLCIL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGATGCAAAGAAG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100411.4
CDS-3UTR TCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTTATTTTGACAGCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIYFDSL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGCTGTCAAAATA...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AGTTTTTCTTCTCCCCATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGTGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: SFSSPHKSRVVPIVEGKGWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...CCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATGGGGAGAAGAAAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAAGTCTTACCCCGGGCTaGGAGCCCCACCATCACAAT +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKESLTPG*EPHHHN
Trigger: ATTGTGATGGTGGGGCTCCCAGCCCGGGGTAAGACT...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: AQGRLWKWNGTHISALVLIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTTGCAAAGCTTCTTCCTAGGTGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: CLKGRRVLLKSLQSFFLGVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...ACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCC +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEITSCLC*TSLSRP
Trigger: GGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGT...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCCTCCGCGGTCTGAATaGTACTTTTCAGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKPPRSE*YFSAGW
Trigger: CCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: AVEMEWNPHLGFSASGKSNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...ACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTAAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVNHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AAGACAAAGACATTAGCGCTACTTTTCAACCCATGCAAAAATGTCGCCAATGCCCCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: KTKTLALLFNPCKNVANAPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTT
46% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACGAACTTCTTGCCTCTaGTGGACAAGCCTGAGTCGC +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIRTSCL*WTSLSR
Trigger: GCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACACCCGGCACCCATATaGCACAGGTGTCAGTTTCAG +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEHPAPI*HRCQFQ
Trigger: CTGAAACTGACACCTGTGGCATATGGGTGCCGGGTG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTTGCAAAGCTTCTTCCTAGGTTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: CLKGRRVLLKSLQSFFLGYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...ACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKYFSAG*STHGGP
Trigger: AGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp GGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCACGTCTGCAGTTCATAAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: GPKILSACTHVSPRLQFISFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...TATGAACTGCAGACGTGGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CCA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: RQETKWANKQALSASNRISFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
3UTR CAA 72 bp AGATGTCTGAAAGGAAGGCGTGTCCTGTTAAAAAGCTaGCAAAGCTTCTTCCTAGGTCACGGACAGAGACAA +
Preference number: 4 (lower is better)
Translates to: RCLKGRRVLLKS*QSFFLGHGQRQ
Trigger: TTGTCTCTGTCCGTGACCTAGGAAGAAGCTTTGCAAGCTTTTTAACAGGACACGCCTTCCTTTCAGACATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIELSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GATCTTATTCATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTCTTTGCATCCTCTaGCCTCTCCCGGTGTGTGCT +
Preference number: 4 (lower is better)
Translates to: DLIHRCSQNVKSHWAKLSLLCIL*PLPVCA
Trigger: AGCACACACCGGGAGAGGTCAGAGGATGCAAAGAAG...AGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATGAATAAGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAGCTCCTCAAAGCTGTTaGTGCGAGGCTTTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEAPQSC*CEAFWW
Trigger: CCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGC...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTC +
Preference number: 4 (lower is better)
Translates to: QETKWANKQALSASNRIIVRSLL*ILFCGL
Trigger: GAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAAC...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACATCACAATCACGGTTaGGGAGTTGGTCAGCTTCGG +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIHHNHG*GVGQLR
Trigger: CCGAAGCTGACCAACTCCCCAACCGTGATTGTGATG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGTTTTCGGACTCTCATaGCTTCCTCATTGTCAGGGC +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKVFGLS*LPHCQG
Trigger: GCCCTGACAATGAGGAAGCCATGAGAGTCCGAAAAC...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: ETKWANKQALSASNRIIEYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
3UTR CAA 72 bp AGCGAGTCCCGCAGGTGTATCTCAACCAGGTTTTTATaGTTCTTGCAACTGCAAACTACACAGATGTCTGAA +
Preference number: 4 (lower is better)
Translates to: SESRRCISTRFL*FLQLQTTQMSE
Trigger: TTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGATACACCTGCGGGACTCGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATC +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKVHGFC*VAVFVI
Trigger: GATTACAAAGACTGCAACTCAGCAGAAGCCATGGAC...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp AAGACAAAGACATTAGCGCTACTTTTCAACCCATGCAAAAATGTCGCCAATGCCCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: KTKTLALLFNPCKNVANAQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp CATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: HRCSQNVKSHWAKLSLDVWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...TACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR GCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACCCCCAATCTTGCCCTaGAAGTTGTACTCATTCTCG +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIPPILP*KLYSFS
Trigger: CGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp GGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCACGTCTGCAGTTCATAATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: GPKILSACTHVSPRLQFIIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...TATGAACTGCAGACGTGGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGTATACAATTCGGCTCTaGATGTGGTCCTGCACTCTG +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKYTIRL*MWSCTL
Trigger: CAGAGTGCAGGACCACATCCAGAGCCGAATTGTATA...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATTGACTATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: CSQNVKSHWAKLSLDVLTMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...AGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAAATGGTACTTTTCAGCTaGCTGGTCCACACACGGAGG +
Preference number: 4 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKMVLFS*LVHTRR
Trigger: CCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCAT...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATATTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEILSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: TKWANKQALSASNRIIEKQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp GATCTTATTCATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCAGCCTGGTGACAGATaGCCAATACATTCTCTTGGC +
Preference number: 4 (lower is better)
Translates to: DLIHRCSQNVKSHWAKLSQPGDR*PIHSLG
Trigger: GCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTG...AGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATGAATAAGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR GCA 90 bp TGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATTGACTTGGCTTCTGCTGAGTTaGAGTCTTTGTAATCCGGGC +
Preference number: 4 (lower is better)
Translates to: CSQNVKSHWAKLSLDVLTWLLLS*SLCNPG
Trigger: GCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCA...AGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIRTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKERTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp CATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTACGGACATTTCAGGTATaGCATCTCCTCTGCACTCTT +
Preference number: 4 (lower is better)
Translates to: HRCSQNVKSHWAKLSLDVRTFQV*HLLCTL
Trigger: AAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCG...TACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR TCA 90 bp TGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATTGACTTTGTCAGGTAGCTTTTaGCATCTCTCAGGGCAGCTA +
Preference number: 4 (lower is better)
Translates to: CSQNVKSHWAKLSLDVLTLSGSF*HLSGQL
Trigger: TAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAA...AGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR TCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACAGGGTAGGTATCTCTaGTCTCCTCATAGGTTAGTT +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEQGRYL*SPHRLV
Trigger: AACTAACCTATGAGGAGATCAGAGATACCTACCCTG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAGGTGGCATCAAAAACTaGAATCTGTCCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIGGIKN*NLSTFL
Trigger: AAGGAAGGTGGACAGATTGCAGTTTTTGATGCCACC...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR GCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAGGTGGCATCAAAAACTaGAATCTGTCCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKEGGIKN*NLSTFL
Trigger: AAGGAAGGTGGACAGATTGCAGTTTTTGATGCCACC...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAAGTTTCAGGACAGTGTaGAGCGGACATTTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEISFRTV*SGHFRY
Trigger: ATACCTGAAATGTCCGCTCCACACTGTCCTGAAACT...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEINHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR TCA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTT +
Preference number: 4 (lower is better)
Translates to: KWANKQALSASNRIIEKENHFDE*QVPVTF
Trigger: AAATGTGACAGGGACTTGTCACTCATCAAAGTGATT...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CCA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATAATTGAACACTTTCGTTaGAACACCTATCCAGTTGAG +
Preference number: 4 (lower is better)
Translates to: WANKQALSASNRIIEKEIIEHFR*NTYPVE
Trigger: CTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS CCA 90 bp TTCGTAGACAGGCTTTCCCTAGCAAAGGTTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGCAGCTTGGCAGGGCAGCAGAAGTGG +
Preference number: 5 (lower is better)
Translates to: FVDRLSLAKVVRAAA*ALPGAGSLAGQQKW
Trigger: CCACTTCTGCTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACCTTTGCTAGGGAAAGCCTGTCTACGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114845.10
ENSMUST00000171188.9
ENSMUST00000191668.6
CDS TCA 90 bp GAGTTGGTCAGCTTCGGCCCACAGGATCTGGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATCTTCTGTACCCGGCTCTGGGTCAGT +
Preference number: 5 (lower is better)
Translates to: ELVSFGPQDLGNEGR*STGTQIFCTRLWVS
Trigger: ACTGACCCAGAGCCGGGTACAGAAGATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCCCAGATCCTGTGGGCCGAAGCTGACCAACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
CDS CCA 90 bp ATGTTAGACAGGCTTTCCCTAGCAAAGGTTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGCAGCTTGGCAGGGCAGCAGAAGTGG +
Preference number: 5 (lower is better)
Translates to: MLDRLSLAKVVRAAA*ALPGAGSLAGQQKW
Trigger: CCACTTCTGCTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACCTTTGCTAGGGAAAGCCTGTCTAACAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049849.12
ENSMUST00000170196.9
CDS-3UTR CAA 90 bp TCCAGGCCCAAGGTGAAGAACAGAAGGCCTAAGGGACTCTGGGAAGAGGGGAGCCCATCACAATCACGGTaGGGGAGTTGGTCAGCTTCG +
Preference number: 5 (lower is better)
Translates to: SRPKVKNRRPKGLWEEGSPSQSR*GSWSAS
Trigger: CGAAGCTGACCAACTCCCCAACCGTGATTGTGATGG...GCTCCCCTCTTCCCAGAGTCCCTTAGGCCTTCTGTTCTTCACCTTGGGCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS TCA 90 bp CTTGCTCAGGGCATTGGCGAACTTCTTGCCTCTGCTGGACAAGCCTaGGTCGCCCCCAATCTTGCCCTGCAAGTTGTACTCATTCTCGCC +
Preference number: 5 (lower is better)
Translates to: LAQGIGELLASAGQA*VAPNLALQVVLILA
Trigger: GGCGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GGGGGTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGAGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: GGDSSRWPAWWYEAYSSRESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGCCTTCCTTGGGCCACCGTCCCTTCTTGAACAATGGGAGTGAAGTTGAAGGCCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: EPSLGHRPFLNNGSEVEGHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...GCCTTCAACTTCACTCCCATTGTTCAAGAAGGGACGGTGGCCCAAGGAAGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: LAITWPREDEQAQGRLWKLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGATTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGGATGCATGTTCCTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: GCYPPHPPSHWLLKDACSLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...GGAACATGCATCCTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS CCA 90 bp GGAGCCTCAGGGCCTCCGCGGTCTGAATGGTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCTTCAGATTCTGTTCTTCTACGAACT +
Preference number: 5 (lower is better)
Translates to: GASGPPRSEWYFSAG*STHGGPSDSVLLRT
Trigger: AGTTCGTAGAAGAACAGAATCTGAAGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGGCCCTGAGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: WPREDEQAQGRLWKWNGTESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...GGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: DEQAQGRLWKWNGTHISAESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: LRSLGLEKMSRHKAGCGNHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...ATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: QAQGRLWKWNGTHISALVHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp AAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: KMSRHKAGCGNGMEPTSRLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...CCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp TTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATCCATCACAATCACGGTaGGGGAGTTGGTCAGCTTCG +
Preference number: 5 (lower is better)
Translates to: LRSLGLEKMSRHKAGCGNPSQSR*GSWSAS
Trigger: CGAAGCTGACCAACTCCCCAACCGTGATTGTGATGG...ATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAACTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: LAITWPREDEQAQGRLWKLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...TTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGTTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: VLAITWPREDEQAQGRLWLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...CCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCATGTTCTTTCCCAGTTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: VLLGRVGTAPGALHVLSQLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...CTGGGAAAGAACATGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: FGWESGSSMGATHPIHQVSGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: DEQAQGRLWKWNGTHISASGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp TGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATAAAAGCCAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: CPSLLSLRPPPRPRCIKASGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...GGCTTTTATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS GCA 90 bp TGCAACACCAAAGAGCAGCCTGGTGAGTCACCTTGGAAGGTTTTCTaGATGATGTTGGAGGCCACAACAGTAGGGTCGTCACAGACCGAC +
Preference number: 5 (lower is better)
Translates to: CNTKEQPGESPWKVF*MMLEATTVGSSQTD
Trigger: GTCGGTCTGTGACGACCCTACTGTTGTGGCCTCCAACATCATGCAGAAAACCTTCCAAGGTGACTCACCAGGCTGCTCTTTGGTGTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GACAGGAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCCCATCACAATCACGGTaGGGGAGTTGGTCAGCTTCG +
Preference number: 5 (lower is better)
Translates to: DRRTAMSLRLVWATQFLSPSQSR*GSWSAS
Trigger: CGAAGCTGACCAACTCCCCAACCGTGATTGTGATGG...GGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTCCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: EDEQAQGRLWKWNGTHISLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...CGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACACTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: LEKMSRHKAGCGNGMEPTLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...TGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: MSRHKAGCGNGMEPTSRLLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...AAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GGGGGTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGATTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: GGDSSRWPAWWYEAYSSRLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CCAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGTTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: PEVLAITWPREDEQAQGRLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...CCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCACCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: HLGFSASGKSRHRSGSSSPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...TGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: EKMSRHKAGCGNGMEPTSESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...AGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: WKWNGTHISALVLLGRVGESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...GCCGACTCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: GTRQAVEMEWNPHLGFSASGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...AGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp CTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAAAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: LGLEKMSRHKAGCGNGMESGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...TTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: EDGHEFEASLGYTVLILFLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GGGGGTGACTCCTCAAGATGGCCAGCATGGTGGTATGAGGCATACAGCAGCAGAGCAAAGTGTTGTATTTaGACAGCCTCTGACCTCTCC +
Preference number: 5 (lower is better)
Translates to: GGDSSRWPAWWYEAYSSRAKCCI*TASDLS
Trigger: GGAGAGGTCAGAGGCTGTCAAAATACAACACTTTGC...TCTGCTGCTGTATGCCTCATACCACCATGCTGGCCATCTTGAGGAGTCACCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179584.8
CDS-3UTR CAA 90 bp GCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: AITWPREDEQAQGRLWKWRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...CCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: EVLAITWPREDEQAQGRLRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCACTGGCTTTTGAAGCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: WKFYGCYPPHPPSHWLLKLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...CTTCAAAAGCCAGTGACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CAGCAATGCCCAAGCCTCTTGTCTCTGAGGCCTCCTCCTAGGCCAAGATGCATATTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: QQCPSLLSLRPPPRPRCILTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...TATGCATCTTGGCCTAGGAGGAGGCCTCAGAGACAAGAGGCTTGGGCATTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: EVLAITWPREDEQAQGRLPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ATCTCGGCTTTAGTGCTTCTGGGAAGAGTCGGCACCGCTCCGGGAGCTCTTCATCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: ISALVLLGRVGTAPGALHPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...ATGAAGAGCTCCCGGAGCGGTGCCGACTCTTCCCAGAAGCACTAAAGCCGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028114.13
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ACGCTGCAGATCTTCAGGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: TLQIFRSKNIISLHTCQPHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...GGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACCTGAAGATCTGCAGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: AQGRLWKWNGTHISALVLSGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp GATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTGCAAAGTGTTGTATTTaGACAGCCTCTGACCTCTCC +
Preference number: 5 (lower is better)
Translates to: DEQAQGRLWKWNGTHISAAKCCI*TASDLS
Trigger: GGAGAGGTCAGAGGCTGTCAAAATACAACACTTTGC...AGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS GCA 90 bp CACCGATTCTACATTCAAGTAAATGGACTCCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAGGACAGTGTGGAGCGGACATTTCAG +
Preference number: 5 (lower is better)
Translates to: HRFYIQVNGLHPAPI*HRCQFQDSVERTFQ
Trigger: CTGAAATGTCCGCTCCACACTGTCCTGAAACTGACACCTGTGGCATATGGGTGCCGGGTGGAGTCCATTTACTTGAATGTAGAATCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS GCA 90 bp TGGGGTGACACTATTGCGTCTCATGAGCGGGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTCCACAGACTGAAAGTCAAGTTCGGT +
Preference number: 5 (lower is better)
Translates to: WGDTIASHERVRSLL*ILFCGLHRLKVKFG
Trigger: ACCGAACTTGACTTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGTGTCACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000114844.8
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp TTTGGGTGGGAGAGTGGAAGTTCTATGGGTGCTACCCACCCCATCCACCAAGTCCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: FGWESGSSMGATHPIHQVRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...GACTTGGTGGATGGGGTGGGTAGCACCCATAGAACTTCCACTCTCCCACCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGATTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: TWPREDEQAQGRLWKWNGLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...TCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGACCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: RSLGLEKMSRHKAGCGNGPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...TCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: KSLRSLGLEKMSRHKAGCPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...ACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: RQETKWANKQALSASNRIHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp AGGCAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: RQETKWANKQALSASNRILMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...AATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp ACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAGCAAAGTGTTGTATTTaGACAGCCTCTGACCTCTCC +
Preference number: 5 (lower is better)
Translates to: TWPREDEQAQGRLWKWNGAKCCI*TASDLS
Trigger: GGAGAGGTCAGAGGCTGTCAAAATACAACACTTTGC...TCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS GCA 90 bp ATTGCGTCTCATGAGCGGGTTAGGTCCCTTCTTTGCATCCTGTTTTaGGGACTCCACAGACTGAAAGTCAAGTTCGGTGTAAGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: IASHERVRSLLCILF*GLHRLKVKFGVRGR
Trigger: CCTTCCTCTTACACCGAACTTGACTTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114844.8
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp CAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: QAQGRLWKWNGTHISALVRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...CACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: RQAVEMEWNPHLGFSASGRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...CCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: EVLAITWPREDEQAQGRLLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...CAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGACTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: SLRSLGLEKMSRHKAGCGLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...TCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CAGAAGTCCTTGCGATCACTTGGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: QKSLRSLGLEKMSRHKAGLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...GCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCCAAGTGATCGCAAGGACTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GGCCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: GLEKMSRHKAGCGNGMEPLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...GGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTTTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: AQGRLWKWNGTHISALVLLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp GAAGGAAAAGTGCAAACAAACAGCCAACAACAGAATCTACTCAGGTGCCTCCAGGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: EGKVQTNSQQQNLLRCLQESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...CTGGAGGCACCTGAGTAGATTCTGTTGTTGGCTGTTTGTTTGCACTTTTCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCGTTTTCTGCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: EDGHEFEASLGYTVLILFVFCMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGCAGAAAAC...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: AQGRLWKWNGTHISALVLRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...AAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CCTCGAGAAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: PREDEQAQGRLWKWNGTHLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...GTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTTCTCGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTGGGAAGATTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: RLWKWNGTHISALVLLGRLTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...TCTTCCCAGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGTTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIELMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGCCATCACAATCACGGTaGGGGAGTTGGTCAGCTTCG +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIEPSQSR*GSWSAS
Trigger: CGAAGCTGACCAACTCCCCAACCGTGATTGTGATGG...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp CAACAACAGAATCTACTCAGGTGCCTCCAGGCCCAAGGTGAAGAACAGAAGGCCCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: QQQNLLRCLQAQGEEQKALSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...GGCCTTCTGTTCTTCACCTTGGGCCTGGAGGCACCTGAGTAGATTCTGTTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAGATGAGCAGGCACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: KMSRHKAGCGNGMEPTSRLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...CCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGTGCCTGCTCATCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ACAAGGCAGGCTGTGGAAATGGAATGGAACCCACATCTCGGCTTTAGTGCTTCTCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: TRQAVEMEWNPHLGFSASPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...AGAAGCACTAAAGCCGAGATGTGGGTTCCATTCCATTTCCACAGCCTGCCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000170196.9
ENSMUST00000191668.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGGACGGCCATGAGTTTGAGGCTAGTTTGGGCTACACAGTTCTTATCCTGTTCCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: EDGHEFEASLGYTVLILFPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...GAACAGGATAAGAACTGTGTAGCCCAAACTAGCCTCAAACTCATGGCCGTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp ACGCTGCAGATCTTCAGGTCCAAAAATATTATCAGCCTGCACACATGTCAGCCCCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: TLQIFRSKNIISLHTCQPRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...GGGCTGACATGTGTGCAGGCTGATAATATTTTTGGACCTGAAGATCTGCAGCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIELMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: TKWANKQALSASNRIIEKESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: KWANKQALSASNRIIEKEHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACCATCACAATCACGGTaGGGGAGTTGGTCAGCTTCG +
Preference number: 5 (lower is better)
Translates to: KWANKQALSASNRIIEKEPSQSR*GSWSAS
Trigger: CGAAGCTGACCAACTCCCCAACCGTGATTGTGATGG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: TKWANKQALSASNRIIEKLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TGGTCACACATGACCACCCCTACCTGTCTCAGCCTTGAGAGTCTCTATGTTGTACTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: WSHMTTPTCLSLESLYVVLSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...TACAACATAGAGACTCTCAAGGCTGAGACAGGTAGGGGTGGTCATGTGTGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: KWANKQALSASNRIIEKEESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTATTGACTCACAGGCTCCAGGCGTaGGACAAGATCCTGGTAGGA +
Preference number: 5 (lower is better)
Translates to: CSQNVKSHWAKLSLDVLTHRLQA*DKILVG
Trigger: TCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTG...AGTCAATACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: TKWANKQALSASNRIIEKSGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAATTGATGCGAGGCTTTTaGGTGGGCTCGGGACTGGCT +
Preference number: 5 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKLMRGF*VGSGLA
Trigger: AGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAA...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp CATAAATCAAGGGTAGTGCCCATTGTTGAAGGAAAGGGGAGAAATTTACCCCCACGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: HKSRVVPIVEGKGRNLPPRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...TGGGGGTAAATTTCTCCCCTTTCCTTCAACAATGGGCACTACCCTTGATTTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CATAGGTGTTCACAGAATGTGAAATCACATTGGGCAAAGCTTTCTCTTGATGTACTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: HRCSQNVKSHWAKLSLDVLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...TACATCAAGAGAAAGCTTTGCCCAATGTGATTTCACATTCTGTGAACACCTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGTTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIELTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAAGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKESPPI*PCKLYS
Trigger: TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTC...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: KWANKQALSASNRIIEKESGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp GTTGTAAAAGCTGGTTCTATAACCATAAAATGGATATGGTCAGGAGGAAGCATCAGTGGGGTGACACTATaGCGTCTCATGAGCGGGTTA +
Preference number: 5 (lower is better)
Translates to: VVKAGSITIKWIWSGGSISGVTL*RLMSGL
Trigger: TAACCCGCTCATGAGACGCAATAGTGTCACCCCACT...GATGCTTCCTCCTGACCATATCCATTTTATGGTTATAGAACCAGCTTTTACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGGCAAAGTGTTGTATTTaGACAGCCTCTGACCTCTCC +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIEAKCCI*TASDLS
Trigger: GGAGAGGTCAGAGGCTGTCAAAATACAACACTTTGC...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp AAGACAAAGACATTAGCGCTACTTTTCAACCCATGCAAAAATGTCGCCAATGCCCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: KTKTLALLFNPCKNVANARYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...GGCATTGGCGACATTTTTGCATGGGTTGAAAAGTAGCGCTAATGTCTTTGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp CAGGAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTCGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: QETKWANKQALSASNRIIRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...AATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAACTCATGGCTTCCTCATaGTCAGGGCGGAAGAAGTTG +
Preference number: 5 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKLMASS*SGRKKL
Trigger: CAACTTCTTCCGCCCTGACAATGAGGAAGCCATGAG...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATATTAACTTCCATGATGTaGGAGGCCACAACAGTAGGG +
Preference number: 5 (lower is better)
Translates to: WANKQALSASNRIIEKEILTSMM*EATTVG
Trigger: CCCTACTGTTGTGGCCTCCAACATCATGGAAGTTAA...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp ACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGCCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: TKWANKQALSASNRIIEKPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...CTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACGATACTCTCCCACATaGAACACTTTCGTTGGAACA +
Preference number: 5 (lower is better)
Translates to: WANKQALSASNRIIEKEIRYSPT*NTFVGT
Trigger: TGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp GAGACCAAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGCTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: ETKWANKQALSASNRIIELSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...CTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTTGGTCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAAATACCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: WANKQALSASNRIIEKEIPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...TATTTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS-3UTR CAA 90 bp TCTCAACCAGGTTTTTATTGTTCTTGCAACTGCAAACTACACAGATGTCTGAAACCAACATCAATCACTTaGATGAGTGACAAGTCCCTG +
Preference number: 5 (lower is better)
Translates to: SQPGFYCSCNCKLHRCLKPTSIT*MSDKSL
Trigger: CAGGGACTTGTCACTCATCAAAGTGATTGATGTTGG...TTTCAGACATCTGTGTAGTTTGCAGTTGCAAGAACAATAAAAACCTGGTTGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000028114.13
ENSMUST00000114846.9
ENSMUST00000179584.8
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS-3UTR CAA 90 bp AAATGGGCAAACAAGCAAGCGTTGAGTGCAAGCAATAGAATTATTGAGAAGGAACTTTCTCTAGTTGTATaGGTGGCATCAAAAACTGCA +
Preference number: 5 (lower is better)
Translates to: KWANKQALSASNRIIEKELSLVV*VASKTA
Trigger: TGCAGTTTTTGATGCCACCAATACAACTAGAGAAAG...TTCCTTCTCAATAATTCTATTGCTTGCACTCAACGCTTGCTTGTTTGCCCATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100411.4
ENSMUST00000114844.8
CDS CCA 72 bp AGGCTTTCCCTAGCAAAGGTTGTCCGGGCAGCTGCGTaGGCACTTCCGGGGGCAGGCAGCTTGGCAGGGCAG +
Preference number: 6 (lower is better)
Translates to: RLSLAKVVRAAA*ALPGAGSLAGQ
Trigger: CTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACCTTTGCTAGGGAAAGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000191668.6
CDS TCA 72 bp AGCTTCGGCCCACAGGATCTGGGCAACGAGGGTCGGTaGTCGACGGGCACCCAGATCTTCTGTACCCGGCTC +
Preference number: 6 (lower is better)
Translates to: SFGPQDLGNEGR*STGTQIFCTRL
Trigger: GAGCCGGGTACAGAAGATCTGGGTGCCCGTCGATCACCGACCCTCGTTGCCCAGATCCTGTGGGCCGAAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
CDS CAA 72 bp GCTGGGAGCCCCACCATCACAATCACGGTTGGGGAGTaGGTCAGCTTCGGCCCACAGGATCTGGGCAACGAG +
Preference number: 6 (lower is better)
Translates to: AGSPTITITVGE*VSFGPQDLGNE
Trigger: CTCGTTGCCCAGATCCTGTGGGCCGAAGCTGACCAACTCCCCAACCGTGATTGTGATGGTGGGGCTCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
CDS GCA 72 bp TGCCTCTGCTGGACAAGCCTGAGTCGCCCCCAATCTTaGCCTGCAAGTTGTACTCATTCTCGCCATGCCGAC +
Preference number: 6 (lower is better)
Translates to: CLCWTSLSRPQS*PASCTHSRHAD
Trigger: GTCGGCATGGCGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CCA 72 bp ACTTGCTCAGGGCATTGGCGAACTTCTTGCCTCTGCTaGACAAGCCTGAGTCGCCCCCAATCTTGCCCTGCA +
Preference number: 6 (lower is better)
Translates to: TCSGHWRTSCLC*TSLSRPQSCPA
Trigger: TGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS TCA 72 bp GGCATTGGCGAACTTCTTGCCTCTGCTGGACAAGCCTaGGTCGCCCCCAATCTTGCCCTGCAAGTTGTACTC +
Preference number: 6 (lower is better)
Translates to: GIGELLASAGQA*VAPNLALQVVL
Trigger: GAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAATGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CAA 72 bp TTGCCTCTGCTGGACAAGCCTGAGTCGCCCCCAATCTaGCCCTGCAAGTTGTACTCATTCTCGCCATGCCGA +
Preference number: 6 (lower is better)
Translates to: LPLLDKPESPPI*PCKLYSFSPCR
Trigger: TCGGCATGGCGAGAATGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CCA 72 bp GGGCCTCCGCGGTCTGAATGGTACTTTTCAGCTGGCTaGTCCACACACGGAGGTCCTTCAGATTCTGTTCTT +
Preference number: 6 (lower is better)
Translates to: GPPRSEWYFSAG*STHGGPSDSVL
Trigger: AAGAACAGAATCTGAAGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTACCATTCAGACCGCGGAGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS GCA 72 bp CACGGAGGTCCTTCAGATTCTGTTCTTCTACGAACTTaGTCAGGGCATTGGCGAACTTCTTGCCTCTGCTGG +
Preference number: 6 (lower is better)
Translates to: HGGPSDSVLLRT*SGHWRTSCLCW
Trigger: CCAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAGTTCGTAGAAGAACAGAATCTGAAGGACCTCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS GCA 72 bp TACATTCAAGTAAATGGACTCCACCCGGCACCCATATaGCACAGGTGTCAGTTTCAGGACAGTGTGGAGCGG +
Preference number: 6 (lower is better)
Translates to: YIQVNGLHPAPI*HRCQFQDSVER
Trigger: CCGCTCCACACTGTCCTGAAACTGACACCTGTGGCATATGGGTGCCGGGTGGAGTCCATTTACTTGAATGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS CCA 72 bp CAGTTTCAGGACAGTGTGGAGCGGACATTTCAGGTATaGCATCTCCTCTGCACTCTTGTCGAGGAAGTAGGC +
Preference number: 6 (lower is better)
Translates to: QFQDSVERTFQV*HLLCTLVEEVG
Trigger: GCCTACTTCCTCGACAAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCGCTCCACACTGTCCTGAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 12 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
CDS GCA 72 bp AAAGAGCAGCCTGGTGAGTCACCTTGGAAGGTTTTCTaGATGATGTTGGAGGCCACAACAGTAGGGTCGTCA +
Preference number: 6 (lower is better)
Translates to: KEQPGESPWKVF*MMLEATTVGSS
Trigger: TGACGACCCTACTGTTGTGGCCTCCAACATCATGCAGAAAACCTTCCAAGGTGACTCACCAGGCTGCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS CCA 72 bp TCCTGCAACACCAAAGAGCAGCCTGGTGAGTCACCTTaGAAGGTTTTCTGCATGATGTTGGAGGCCACAACA +
Preference number: 6 (lower is better)
Translates to: SCNTKEQPGESP*KVFCMMLEATT
Trigger: TGTTGTGGCCTCCAACATCATGCAGAAAACCTTCCAAGGTGACTCACCAGGCTGCTCTTTGGTGTTGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195779.6
CDS CAA 72 bp ACACGGAGGTCCTTCAGATTCTGTTCTTCTACGAACTaGCTCAGGGCATTGGCGAACTTCTTGCCTCTGCTG +
Preference number: 6 (lower is better)
Translates to: TRRSFRFCSSTN*LRALANFLPLL
Trigger: CAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAGTTCGTAGAAGAACAGAATCTGAAGGACCTCCGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS GCA 72 bp CATGAGCGGGTTAGGTCCCTTCTTTGCATCCTGTTTTaGGGACTCCACAGACTGAAAGTCAAGTTCGGTGTA +
Preference number: 6 (lower is better)
Translates to: HERVRSLLCILF*GLHRLKVKFGV
Trigger: TACACCGAACTTGACTTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114844.8
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS GCA 72 bp ACTATTGCGTCTCATGAGCGGGTTAGGTCCCTTCTTTaGATCCTGTTTTGCGGACTCCACAGACTGAAAGTC +
Preference number: 6 (lower is better)
Translates to: TIASHERVRSLL*ILFCGLHRLKV
Trigger: GACTTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000114844.8
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000191668.6
CDS CCA 72 bp TCAGATTCTGTTCTTCTACGAACTTGCTCAGGGCATTaGCGAACTTCTTGCCTCTGCTGGACAAGCCTGAGT +
Preference number: 6 (lower is better)
Translates to: SDSVLLRTCSGH*RTSCLCWTSLS
Trigger: ACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAGTTCGTAGAAGAACAGAATCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CAA 72 bp TACTGCTTCACAGCCTCACGCCGATACTCTCCCACATaGAACACTTTCGTTGGAACACCTATCCAGTTGAGG +
Preference number: 6 (lower is better)
Translates to: YCFTASRRYSPT*NTFVGTPIQLR
Trigger: CCTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAATGTGGGAGAGTATCGGCGTGAGGCTGTGAAGCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CAA 72 bp TTCAGATTCTGTTCTTCTACGAACTTGCTCAGGGCATaGGCGAACTTCTTGCCTCTGCTGGACAAGCCTGAG +
Preference number: 6 (lower is better)
Translates to: FRFCSSTNLLRA*ANFLPLLDKPE
Trigger: CTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAATGCCCTGAGCAAGTTCGTAGAAGAACAGAATCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CAA 90 bp TCCTGCACTCTGTTCACCAAGAACCTCCGGCCAACATCAATCACTTaGATGAGTGACAAGTCCCTGTCACATTTATCAGGGTCAAGAGGC +
Preference number: 6 (lower is better)
Translates to: SCTLFTKNLRPTSIT*MSDKSLSHLSGSRG
Trigger: GCCTCTTGACCCTGATAAATGTGACAGGGACTTGTCACTCATCAAAGTGATTGATGTTGGCCGGAGGTTCTTGGTGAACAGAGTGCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS TCA 72 bp CAAGAACCTCCGGCCAACATCAATCACTTTGATGAGTaGCAAGTCCCTGTCACATTTATCAGGGTCAAGAGG +
Preference number: 6 (lower is better)
Translates to: QEPPANINHFDE*QVPVTFIRVKR
Trigger: CCTCTTGACCCTGATAAATGTGACAGGGACTTGTCACTCATCAAAGTGATTGATGTTGGCCGGAGGTTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS CAA 72 bp CTGTTCACCAAGAACCTCCGGCCAACATCAATCACTTaGATGAGTGACAAGTCCCTGTCACATTTATCAGGG +
Preference number: 6 (lower is better)
Translates to: LFTKNLRPTSIT*MSDKSLSHLSG
Trigger: CCCTGATAAATGTGACAGGGACTTGTCACTCATCAAAGTGATTGATGTTGGCCGGAGGTTCTTGGTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6
CDS TCA 72 bp ATTGATTCTCTTCATGAAGTCGTCCATGGCTTCTGCTaGGTTGCAGTCTTTGTAATCCGGGCTGGAGATTTT +
Preference number: 6 (lower is better)
Translates to: IDSLHEVVHGFC*VAVFVIRAGDF
Trigger: AAAATCTCCAGCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCATGGACGACTTCATGAAGAGAATCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 13 transcripts:
ENSMUST00000028114.13
ENSMUST00000049849.12
ENSMUST00000100411.4
ENSMUST00000114844.8
ENSMUST00000114845.10
ENSMUST00000114846.9
ENSMUST00000170196.9
ENSMUST00000171188.9
ENSMUST00000179584.8
ENSMUST00000183869.8
ENSMUST00000191668.6
ENSMUST00000192949.6
ENSMUST00000195779.6