Pregenerated sensors for PFDN6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024309Ensembl transcript IDs: ENSMUST00000025163.14, ENSMUST00000173678.3, ENSMUST00000174048.8, ENSMUST00000174426.2, ENSMUST00000179418.9
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACGGTTCCCTCTGTTGCTCTaGCTGCCGCTCGAGGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: HFIGSGLASSLPPDPLPRFPLLL*LPLEVP Trigger: CGGGACCTCGAGCGGCAGTCAGAGCAACAGAGGGAA...CCGTGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | CATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACGGCCCCCAGCTCCTGTTTaGCAAGCACGGGTCCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: HFIGSGLASSLPPDPLPRPPAPV*QARVPE Trigger: TTCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGGG...CCGTGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCAGCCTCTTCCCTACTGTaGCCCGAGCCTCCCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPASSLL*PEPPPA Trigger: AGCTGGGGGAGGCTCGGGCCACAGTAGGGAAGAGGC...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCATTCCCTCTGTTGCTCTaGCTGCCGCTCGAGGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPFPLLL*LPLEVP Trigger: CGGGACCTCGAGCGGCAGTCAGAGCAACAGAGGGAA...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CCA 90 bp | TGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCGCCTCTTCCCTACTGTaGCCCGAGCCTCCCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CLHFIGSGLASSLPPDPLASSLL*PEPPPA Trigger: AGCTGGGGGAGGCTCGGGCCACAGTAGGGAAGAGGC...GAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACCCCCAGCTCCTGTTTaGCAAGCACGGGTCCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPPPAPV*QARVPE Trigger: TTCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGGG...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR GCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACTCTGTTGCTCTGACTaGCGCTCGAGGTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPLCCSD*RSRSRS Trigger: GCTTCGGGACCTCGAGCGGCAGTCAGAGCAACAGAG...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CCA 90 bp | TTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCGCCTCTTCCCTACTGTaGCCCGAGCCTCCCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: FCLHFIGSGLASSLPPDPASSLL*PEPPPA Trigger: AGCTGGGGGAGGCTCGGGCCACAGTAGGGAAGAGGC...GGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TGGTTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACTTCCCTCTGTTGCTCTaGCTGCCGCTCGAGGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: WFCLHFIGSGLASSLPPDFPLLL*LPLEVP Trigger: CGGGACCTCGAGCGGCAGTCAGAGCAACAGAGGGAA...GTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCTGTTGCTCTGACTaGCGCTCGAGGTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: FCLHFIGSGLASSLPPDPLCCSD*RSRSRS Trigger: GCTTCGGGACCTCGAGCGGCAGTCAGAGCAACAGAG...GGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCAAACTCCTGCTGCAGTTaGGCAAGGGTTTCCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPNSCCS*ARVSLC Trigger: ACAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTT...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR GCA 90 bp | CATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACGGTTCTCTACCTCTCCCTaGAGCTTCTTTTGGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: HFIGSGLASSLPPDPLPRFSTSP*SFFWIS Trigger: ACTGATCCAAAAGAAGCTGCAGGGAGAGGTAGAGAA...CCGTGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCAACTCCTGCTGCAGTTaGGCAAGGGTTTCCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: CLHFIGSGLASSLPPDPLNSCCS*ARVSLC Trigger: ACAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTT...GAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCAGAGCTTCTGCCTCCCTaGCATAGATTTACTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: LHFIGSGLASSLPPDPLPELLPP*HRFTQV Trigger: GACTTGAGTAAATCTATGTCAGGGAGGCAGAAGCTC...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCGAGCTTCTGCCTCCCTaGCATAGATTTACTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: CLHFIGSGLASSLPPDPLELLPP*HRFTQV Trigger: GACTTGAGTAAATCTATGTCAGGGAGGCAGAAGCTC...GAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR TCA 90 bp | TTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCGAGCTTCTGCCTCCCTaGCATAGATTTACTCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: FCLHFIGSGLASSLPPDPELLPP*HRFTQV Trigger: GACTTGAGTAAATCTATGTCAGGGAGGCAGAAGCTC...GGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR GCA 90 bp | TGGTTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACTTCTCTACCTCTCCCTaGAGCTTCTTTTGGATCAGT | + |
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Preference number: 4 (lower is better) Translates to: WFCLHFIGSGLASSLPPDFSTSP*SFFWIS Trigger: ACTGATCCAAAAGAAGCTGCAGGGAGAGGTAGAGAA...GTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 |
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| CDS-3UTR TCA 90 bp | AATCTCAAGAGGTGTAAAAGTGTACGGGAATGGAAGTACAGTGAAGAAAGACTGAACTCCTGCTGCAGTTaGGCAAGGGTTTCCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: NLKRCKSVREWKYSEERLNSCCS*ARVSLC Trigger: ACAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTT...CAGTCTTTCTTCACTGTACTTCCATTCCCGTACACTTTTACACCTCTTGAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025163.14 |
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| CDS-3UTR CAA 90 bp | CATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACGGCTTTCCCAGGAGCCTTaGCAGCTTGGGCCCGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: HFIGSGLASSLPPDPLPRLSQEP*QLGPAE Trigger: TTCAGCGGGCCCAAGCTGCAAAGGCTCCTGGGAAAG...CCGTGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCATCCCCCAGCTCCTGTTaGACAAGCACGGGTCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: LHFIGSGLASSLPPDPLPSPSSC*TSTGPR Trigger: TCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGGGA...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACTTTCCCAGGAGCCTTaGCAGCTTGGGCCCGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: LHFIGSGLASSLPPDPLPLSQEP*QLGPAE Trigger: TTCAGCGGGCCCAAGCTGCAAAGGCTCCTGGGAAAG...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCTCCCCCAGCTCCTGTTaGACAAGCACGGGTCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: CLHFIGSGLASSLPPDPLSPSSC*TSTGPR Trigger: TCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGGGA...GAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | CATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCACGGGTCCTTCTGCAGCTGTaGATATTTCTCTACCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HFIGSGLASSLPPDPLPRVLLQL*IFLYLS Trigger: GGAGAGGTAGAGAAATATCAACAGCTGCAGAAGGAC...CCGTGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCAAAACTCCTGCTGCAGTaGAGCAAGGGTTTCCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: LHFIGSGLASSLPPDPLPKLLLQ*SKGFPL Trigger: CAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTTT...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TGGTTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCTTTCCCAGGAGCCTTaGCAGCTTGGGCCCGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: WFCLHFIGSGLASSLPPDLSQEP*QLGPAE Trigger: TTCAGCGGGCCCAAGCTGCAAAGGCTCCTGGGAAAG...GTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 |
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| CDS-3UTR CAA 90 bp | TTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCCCAGTCCTTCTGCAGCTGTaGATATTTCTCTACCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LHFIGSGLASSLPPDPLPVLLQL*IFLYLS Trigger: GGAGAGGTAGAGAAATATCAACAGCTGCAGAAGGAC...TGGGAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TTCTGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCAAACTCCTGCTGCAGTaGAGCAAGGGTTTCCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: FCLHFIGSGLASSLPPDPKLLLQ*SKGFPL Trigger: CAGAGGGAAACCCTTGCTCAACTGCAGCAGGAGTTT...GGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS-3UTR CAA 90 bp | TGTTTACATTTTATTGGCTCAGGGTTAGCCTCATCCCTCCCTCCTGACCCCCTCGTCCTTCTGCAGCTGTaGATATTTCTCTACCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: CLHFIGSGLASSLPPDPLVLLQL*IFLYLS Trigger: GGAGAGGTAGAGAAATATCAACAGCTGCAGAAGGAC...GAGGGGGTCAGGAGGGAGGGATGAGGCTAACCCTGAGCCAATAAAATGTAAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025163.14 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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| CDS CAA 90 bp | TCTAGCCTCTTCCCTACTGTGGCCCGAGCCTCCCCCAGCTCCTGTTaGACAAGCACGGGTCCCAGAAGCTTAAAGACCACGTTGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: SSLFPTVARASPSSC*TSTGPRSLKTTLDP Trigger: TGGATCCAACGTGGTCTTTAAGCTTCTGGGACCCGTGCTTGTCAAACAGGAGCTGGGGGAGGCTCGGGCCACAGTAGGGAAGAGGCTAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000025163.14 ENSMUST00000173678.3 ENSMUST00000174048.8 ENSMUST00000174426.2 ENSMUST00000179418.9 |
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| CDS CAA 72 bp | GATCCATCCAGCAGGGCCAGCTCCTCCTTCACGATATaGTTTTCCGTTAGCTGTGCTTCGAGCTTCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: DPSSRASSSFTI*FSVSCASSFCL Trigger: GAGGCAGAAGCTCGAAGCACAGCTAACGGAAAACAATATCGTGAAGGAGGAGCTGGCCCTGCTGGATGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000025163.14 ENSMUST00000173678.3 ENSMUST00000174048.8 ENSMUST00000174426.2 ENSMUST00000179418.9 |
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| CDS CAA 90 bp | AGCTCCTGTTTGACAAGCACGGGTCCCAGAAGCTTAAAGACCACGTaGGATCCATCCAGCAGGGCCAGCTCCTCCTTCACGATATTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SSCLTSTGPRSLKTT*DPSSRASSSFTILF Trigger: AAACAATATCGTGAAGGAGGAGCTGGCCCTGCTGGATGGATCCAACGTGGTCTTTAAGCTTCTGGGACCCGTGCTTGTCAAACAGGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000025163.14 ENSMUST00000173678.3 ENSMUST00000174048.8 ENSMUST00000174426.2 ENSMUST00000179418.9 |
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| CDS GCA 72 bp | ACGATATTGTTTTCCGTTAGCTGTGCTTCGAGCTTCTaGCTCCCTGACATAGATTTACTCAAGTCCTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: TILFSVSCASSF*LPDIDLLKSFC Trigger: GCAGAAGGACTTGAGTAAATCTATGTCAGGGAGGCAGAAGCTCGAAGCACAGCTAACGGAAAACAATATCGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025163.14 ENSMUST00000173678.3 ENSMUST00000174048.8 ENSMUST00000179418.9 |
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