Pregenerated sensors for PFDN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001289Ensembl transcript IDs: ENSMUST00000001335.7, ENSMUST00000062492.11, ENSMUST00000165671.8, ENSMUST00000166658.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCTCTGGTTGGAACCTCTATAAGGCCGTGTGGCTAGGGGGCTCTTaGCAAAAGTACACCTCCTGGGCACTCCCAGTTCAGCACCAGGCC | + |
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Preference number: 1 (lower is better) Translates to: TSGWNLYKAVWLGGS*QKYTSWALPVQHQA Trigger: GGCCTGGTGCTGAACTGGGAGTGCCCAGGAGGTGTACTTTTGCCAAGAGCCCCCTAGCCACACGGCCTTATAGAGGTTCCAACCAGAGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR GCA 90 bp | CGAGGTCTTTTAGCGGGCGGATCCTGCTCTGAGCCAAGCATGCGGTaGTGGGCTTGGAGAACTGACCGGAGCGGCAATGTTAAGATACCA | + |
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Preference number: 1 (lower is better) Translates to: RGLLAGGSCSEPSMR*WAWRTDRSGNVKIP Trigger: TGGTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCATGCTTGGCTCAGAGCAGGATCCGCCCGCTAAAAGACCTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR GCA 90 bp | TTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTaGTTCATTTCTGCAGTGCACTCTCAGGCTTTGACCGTGGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: LPEKVPGPLKKGPSL*FISAVHSQALTVAC Trigger: GCAGGCCACGGTCAAAGCCTGAGAGTGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR CCA 90 bp | TCCATGACAGCCTGCTTCATGGCATGCTTCTCCTGCAGCGCTGGCTaGATTTTCTCCATCTGTTTGGTGAGGAAGTCTATCTTCCTTTTG | + |
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Preference number: 1 (lower is better) Translates to: SMTACFMACFSCSAG*IFSICLVRKSIFLL Trigger: CAAAAGGAAGATAGACTTCCTCACCAAACAGATGGAGAAAATCCAGCCAGCGCTGCAGGAGAAGCATGCCATGAAGCAGGCTGTCATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR GCA 90 bp | TTCAGCACCAGGCCCTTGTTTAATGCAAGAATAGACCACCCCATTTaGGCAGCGGTCACATTTATTAACATTAAACACAAAACACTCTCT | + |
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Preference number: 1 (lower is better) Translates to: FSTRPLFNARIDHPI*AAVTFINIKHKTLS Trigger: AGAGAGTGTTTTGTGTTTAATGTTAATAAATGTGACCGCTGCGCAAATGGGGTGGTCTATTCTTGCATTAAACAAGGGCCTGGTGCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR-3UTR GCA 90 bp | AGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCAGCTTTGACCGTGGCCTaGGCTGCCCCCAGGGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: SPRPLEEGSLTLLHFCSAALTVA*AAPRAV Trigger: CACAGCCCTGGGGGCAGCGCAGGCCACGGTCAAAGC...TGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR-3UTR CCA 90 bp | CTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCTCCTGCAGCGCTGGCTaGATTTTCTCCATCTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: LSSQATFPGGHCRKKSQASCSAG*IFSICL Trigger: CAAACAGATGGAGAAAATCCAGCCAGCGCTGCAGGA...GGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR CAA 90 bp | GGCAAAAGTACACCTCCTGGGCACTCCCAGTTCAGCACCAGGCCCTaGTTTAATGCAAGAATAGACCACCCCATTTGCGCAGCGGTCACA | + |
|
Preference number: 2 (lower is better) Translates to: GKSTPPGHSQFSTRP*FNARIDHPICAAVT Trigger: TGTGACCGCTGCGCAAATGGGGTGGTCTATTCTTGCATTAAACAAGGGCCTGGTGCTGAACTGGGAGTGCCCAGGAGGTGTACTTTTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR-3UTR TCA 90 bp | AAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGGCTCATCATTTCCATaGCAGCCTGCTTCATGGCAT | + |
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Preference number: 2 (lower is better) Translates to: KSPRPLEEGSLTLLHFCSGSSFP*QPASWH Trigger: ATGCCATGAAGCAGGCTGTCATGGAAATGATGAGCC...ACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR-3UTR CAA 90 bp | ACCCGGAAGAGGAAGTGTCAGGCACAGCTTCACTTCCGCCCGCCATCCGTCCCCTTTCCCAGGAGGCCATaGCCGGAAAAAGTCCCAGGC | + |
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Preference number: 3 (lower is better) Translates to: TRKRKCQAQLHFRPPSVPFPRRP*PEKVPG Trigger: GCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAA...GGGGACGGATGGCGGGCGGAAGTGAAGCTGTGCCTGACACTTCCTCTTCCGGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR GCA 72 bp | TTAGCGGGCGGATCCTGCTCTGAGCCAAGCATGCGGTaGTGGGCTTGGAGAACTGACCGGAGCGGCAATGTT | + |
|
Preference number: 3 (lower is better) Translates to: LAGGSCSEPSMR*WAWRTDRSGNV Trigger: AACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCATGCTTGGCTCAGAGCAGGATCCGCCCGCTAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR GCA 72 bp | ATGAGGTTGTTGCGAGGTCTTTTAGCGGGCGGATCCTaGTCTGAGCCAAGCATGCGGTGCTGGGCTTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: MRLLRGLLAGGS*SEPSMRCWAWR Trigger: TCTCCAAGCCCAGCACCGCATGCTTGGCTCAGAGCAGGATCCGCCCGCTAAAAGACCTCGCAACAACCTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR TCA 72 bp | CCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTaGAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: PGGHCRKKSQAP*RRVPHSASFLQ Trigger: CTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001335.7 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| 3UTR CCA 72 bp | TGGAACCTCTATAAGGCCGTGTGGCTAGGGGGCTCTTaGCAAAAGTACACCTCCTGGGCACTCCCAGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: WNLYKAVWLGGS*QKYTSWALPVQ Trigger: CTGAACTGGGAGTGCCCAGGAGGTGTACTTTTGCCAAGAGCCCCCTAGCCACACGGCCTTATAGAGGTTCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR CCA 72 bp | AGGCACAGCTTCACTTCCGCCCGCCATCCGTCCCCATaGCAACAACACTGTGCACTACTTAGCGCAAAACCT | + |
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Preference number: 3 (lower is better) Translates to: RHSFTSARHPSP*QQHCALLSAKP Trigger: AGGTTTTGCGCTAAGTAGTGCACAGTGTTGTTGCCATGGGGACGGATGGCGGGCGGAAGTGAAGCTGTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR CCA 72 bp | GGATCCTGCTCTGAGCCAAGCATGCGGTGCTGGGCTTaGAGAACTGACCGGAGCGGCAATGTTAAGATACCA | + |
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Preference number: 3 (lower is better) Translates to: GSCSEPSMRCWA*RTDRSGNVKIP Trigger: TGGTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCATGCTTGGCTCAGAGCAGGATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR-3UTR CAA 90 bp | AGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCACTTTTGAAGAAGTCCTaGGCGTCCTCAGCTGTCTTC | + |
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Preference number: 3 (lower is better) Translates to: SPRPLEEGSLTLLHFCSALLKKS*ASSAVF Trigger: GAAGACAGCTGAGGACGCCAAGGACTTCTTCAAAAG...TGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR CCA 72 bp | GCCTGCTTCATGGCATGCTTCTCCTGCAGCGCTGGCTaGATTTTCTCCATCTGTTTGGTGAGGAAGTCTATC | + |
|
Preference number: 3 (lower is better) Translates to: ACFMACFSCSAG*IFSICLVRKSI Trigger: GATAGACTTCCTCACCAAACAGATGGAGAAAATCCAGCCAGCGCTGCAGGAGAAGCATGCCATGAAGCAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR-3UTR CAA 90 bp | CAAGCATGCGGTGCTGGGCTTGGAGAACTGACCGGAGCGGCAATGTTAAGATACTTCAGCACCAGGCCCTaGTTTAATGCAAGAATAGAC | + |
|
Preference number: 3 (lower is better) Translates to: QACGAGLGELTGAAMLRYFSTRP*FNARID Trigger: GTCTATTCTTGCATTAAACAAGGGCCTGGTGCTGAA...GTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCATGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| 3UTR-3UTR CAA 90 bp | CACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTATTTTCTCCATCTGTTaGGTGAGGAAGTCTATCTTC | + |
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Preference number: 3 (lower is better) Translates to: HFPRRPLPEKVPGPLKKGIFSIC*VRKSIF Trigger: GAAGATAGACTTCCTCACCAAACAGATGGAGAAAAT...ACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| 3UTR GCA 72 bp | AGGCCCTTGTTTAATGCAAGAATAGACCACCCCATTTaGGCAGCGGTCACATTTATTAACATTAAACACAAA | + |
|
Preference number: 3 (lower is better) Translates to: RPLFNARIDHPI*AAVTFINIKHK Trigger: TTTGTGTTTAATGTTAATAAATGTGACCGCTGCGCAAATGGGGTGGTCTATTCTTGCATTAAACAAGGGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | AAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCTTTGACCGTGGCCTaGGCTGCCCCCAGGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: KSPRPLEEGSLTLLHFCSALTVA*AAPRAV Trigger: CACAGCCCTGGGGGCAGCGCAGGCCACGGTCAAAGC...ACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR TCA 90 bp | TCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCTGGACCACCTTGAGCTaGGCAATGGACGTGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: SQEAIAGKSPRPLEEGSLWTTLS*AMDVDK Trigger: TTTGTCCACGTCCATTGCTCAGCTCAAGGTGGTCCA...GAGGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR TCA 90 bp | ACACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGTGGTCTGGACCACCTTaGGCTGAGCAATGGACGTGG | + |
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Preference number: 4 (lower is better) Translates to: TLSSQATFPGGHCRKKSQWSGPP*AEQWTW Trigger: CCACGTCCATTGCTCAGCTCAAGGTGGTCCAGACCA...CTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | AGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCAGCCTGCTTCATGGCATaGTTCTCCTGCAGCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: SPRPLEEGSLTLLHFCSAACFMA*FSCSAG Trigger: GCCAGCGCTGCAGGAGAAGCATGCCATGAAGCAGGC...TGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | CAAGCATGCGGTGCTGGGCTTGGAGAACTGACCGGAGCGGCAATGTTAAGATACGCCTGCTTCATGGCATaGTTCTCCTGCAGCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: QACGAGLGELTGAAMLRYACFMA*FSCSAG Trigger: GCCAGCGCTGCAGGAGAAGCATGCCATGAAGCAGGC...GTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGCACCGCATGCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR TCA 90 bp | AACACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCATGGTCTGGACCACCTTaGGCTGAGCAATGGACGTGG | + |
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Preference number: 4 (lower is better) Translates to: NTLFPGHFPRRPLPEKVPWSGPP*AEQWTW Trigger: CCACGTCCATTGCTCAGCTCAAGGTGGTCCAGACCA...TGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGTGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| 3UTR CAA 72 bp | AACACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATaGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: NTLFPGHFPRRP*PEKVPGPLKKG Trigger: ACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGTGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001335.7 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | AAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCCTGCTTCATGGCATaGTTCTCCTGCAGCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KSPRPLEEGSLTLLHFCSACFMA*FSCSAG Trigger: GCCAGCGCTGCAGGAGAAGCATGCCATGAAGCAGGC...ACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | CACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCTTCTCCTGCAGCGCTaGCTGGATTTTCTCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: HFPRRPLPEKVPGPLKKGLLLQR*LDFLHL Trigger: CAGATGGAGAAAATCCAGCCAGCGCTGCAGGAGAAG...ACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | GAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGGACGTACATCCTCGTTaGTCTTGTTCAGCACGTTCA | + |
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Preference number: 4 (lower is better) Translates to: EAIAGKSPRPLEEGSLTLDVHPR*SCSARS Trigger: TGAACGTGCTGAACAAGAGCAACGAGGATGTACGTC...CAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| CDS-3UTR CCA 90 bp | ACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCGAGCATTTCCAGTTGTaGCAGATTCAGCTCCGTGAT | + |
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Preference number: 4 (lower is better) Translates to: TLFPGHFPRRPLPEKVPGEHFQL*QIQLRD Trigger: ATCACGGAGCTGAATCTGCCACAACTGGAAATGCTC...GCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | CACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGGCTGAGCAATGGACGTaGACAAAAACTCCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: HSLPRPLSQEAIAGKSPRAEQWT*TKTPLP Trigger: AGGAAGTGGAGTTTTTGTCCACGTCCATTGCTCAGC...CCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | GTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCACTCCTGCAGCGCTGGCTaGATTTTCTCCATCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: VPGPLKKGPSLCFISAVHSCSAG*IFSICL Trigger: CAAACAGATGGAGAAAATCCAGCCAGCGCTGCAGGA...GTGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | CTCTATAAGGCCGTGTGGCTAGGGGGCTCTTGGCAAAAGTACACCTCCTGGGCAGAGCATTTCCAGTTGTaGCAGATTCAGCTCCGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LYKAVWLGGSWQKYTSWAEHFQL*QIQLRD Trigger: ATCACGGAGCTGAATCTGCCACAACTGGAAATGCTC...TGCCCAGGAGGTGTACTTTTGCCAAGAGCCCCCTAGCCACACGGCCTTATAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | AAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCTTCTCCTGCAGCGCTaGCTGGATTTTCTCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: KVPGPLKKGPSLCFISAVLLLQR*LDFLHL Trigger: CAGATGGAGAAAATCCAGCCAGCGCTGCAGGAGAAG...CACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR GCA 90 bp | GCTCTTGGCAAAAGTACACCTCCTGGGCACTCCCAGTTCAGCACCAGGCCCTTGATTCTTTTCCCTCGTTaGTCTTGTTCAGCACGTTCA | + |
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Preference number: 4 (lower is better) Translates to: ALGKSTPPGHSQFSTRPLILFPR*SCSARS Trigger: TGAACGTGCTGAACAAGAGCAACGAGGGAAAAGAAT...CAAGGGCCTGGTGCTGAACTGGGAGTGCCCAGGAGGTGTACTTTTGCCAAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR CCA 90 bp | AACACTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGCTGAGCAATGGACGTaGACAAAAACTCCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: NTLFPGHFPRRPLPEKVPAEQWT*TKTPLP Trigger: AGGAAGTGGAGTTTTTGTCCACGTCCATTGCTCAGC...TGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAGTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR TCA 90 bp | GAACTGACCGGAGCGGCAATGTTAAGATACCACGCAGGAAACGTCTACCCATATTGGACCACCTTGAGCTaGGCAATGGACGTGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: ELTGAAMLRYHAGNVYPYWTTLS*AMDVDK Trigger: TTTGTCCACGTCCATTGCTCAGCTCAAGGTGGTCCA...ATATGGGTAGACGTTTCCTGCGTGGTATCTTAACATTGCCGCTCCGGTCAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | CTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCTTGGCTTCCACGTACTaGGTCTGGACCACCTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: LSQEAIAGKSPRPLEEGSLASTY*VWTTLS Trigger: GCTCAAGGTGGTCCAGACCAAGTACGTGGAAGCCAA...GGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | TCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTACATCCTCGTTGCTCTaGTTCAGCACGTTCAGACAG | + |
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Preference number: 5 (lower is better) Translates to: SSQATFPGGHCRKKSQAPTSSLL*FSTFRQ Trigger: CTGTCTGAACGTGCTGAACAAGAGCAACGAGGATGT...AGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| CDS-3UTR CAA 90 bp | AGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCATTGGCTTCCACGTACTaGGTCTGGACCACCTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: SPRPLEEGSLTLLHFCSALASTY*VWTTLS Trigger: GCTCAAGGTGGTCCAGACCAAGTACGTGGAAGCCAA...TGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001335.7 ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | CCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCGGACGTACATCCTCGTaGCTCTTGTTCAGCACGTTC | + |
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Preference number: 5 (lower is better) Translates to: PLPEKVPGPLKKGPSLCFGRTSS*LLFSTF Trigger: GAACGTGCTGAACAAGAGCAACGAGGATGTACGTCC...GAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001335.7 |
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| CDS-3UTR CAA 90 bp | GCTGGGCTTGGAGAACTGACCGGAGCGGCAATGTTAAGATACCACGCAGGAAACTTTCCCTCGTTGCTCTaGTTCAGCACGTTCAGACAG | + |
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Preference number: 5 (lower is better) Translates to: AGLGELTGAAMLRYHAGNFPSLL*FSTFRQ Trigger: CTGTCTGAACGTGCTGAACAAGAGCAACGAGGGAAA...GTTTCCTGCGTGGTATCTTAACATTGCCGCTCCGGTCAGTTCTCCAAGCCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | GCTCTTGGCAAAAGTACACCTCCTGGGCACTCCCAGTTCAGCACCAGGCCCTTGAATTCTTTTCCCTCGTaGCTCTTGTTCAGCACGTTC | + |
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Preference number: 5 (lower is better) Translates to: ALGKSTPPGHSQFSTRPLNSFPS*LLFSTF Trigger: GAACGTGCTGAACAAGAGCAACGAGGGAAAAGAATT...CAAGGGCCTGGTGCTGAACTGGGAGTGCCCAGGAGGTGTACTTTTGCCAAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | AAAGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCTTTTGAAGAAGTCCTaGGCGTCCTCAGCTGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KVPGPLKKGPSLCFISAVLLKKS*ASSAVF Trigger: GAAGACAGCTGAGGACGCCAAGGACTTCTTCAAAAG...CACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | CTCTCTTCCCAGGCCACTTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCATTTTCTCCATCTGTTaGGTGAGGAAGTCTATCTTC | + |
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Preference number: 5 (lower is better) Translates to: LSSQATFPGGHCRKKSQAIFSIC*VRKSIF Trigger: GAAGATAGACTTCCTCACCAAACAGATGGAGAAAAT...GGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAAGTGGCCTGGGAAGAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | TTTCCCAGGAGGCCATTGCCGGAAAAAGTCCCAGGCCCCTTGAAGAAGGGTCCCATTTTCTCCATCTGTTaGGTGAGGAAGTCTATCTTC | + |
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Preference number: 5 (lower is better) Translates to: FPRRPLPEKVPGPLKKGPIFSIC*VRKSIF Trigger: GAAGATAGACTTCCTCACCAAACAGATGGAGAAAAT...GGGACCCTTCTTCAAGGGGCCTGGGACTTTTTCCGGCAATGGCCTCCTGGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000165671.8 ENSMUST00000166658.8 |
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| CDS-3UTR CAA 90 bp | AGTCCCAGGCCCCTTGAAGAAGGGTCCCTCACTCTGCTTCATTTCTGCAGTGCAATTTTCTCCATCTGTTaGGTGAGGAAGTCTATCTTC | + |
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Preference number: 5 (lower is better) Translates to: SPRPLEEGSLTLLHFCSAIFSIC*VRKSIF Trigger: GAAGATAGACTTCCTCACCAAACAGATGGAGAAAAT...TGCACTGCAGAAATGAAGCAGAGTGAGGGACCCTTCTTCAAGGGGCCTGGGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062492.11 ENSMUST00000165671.8 ENSMUST00000166658.8 |
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