Pregenerated sensors for PFDN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006412Ensembl transcript IDs: ENSMUST00000006579.5, ENSMUST00000135941.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAACCACCTTCTGCTCTCAACCCACAGGCAAGTCTCCGCCTCTGTaGTTCCACTTCCCCAGTACAGACCGTGGACTGAAGCGCGTGGGC | + |
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Preference number: 1 (lower is better) Translates to: VTTFCSQPTGKSPPL*FHFPSTDRGLKRVG Trigger: GCCCACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGGAGACTTGCCTGTGGGTTGAGAGCAGAAGGTGGTTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR TCA 90 bp | AGTCTCCGCCTCTGTGGTTCCACTTCCCCAGTACAGACCGTGGACTaGAGCGCGTGGGCCATCGGACTTGCCTTTGGAATGACCAGCTTT | + |
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Preference number: 1 (lower is better) Translates to: SLRLCGSTSPVQTVD*SAWAIGLAFGMTSF Trigger: AAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGGAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR GCA 90 bp | GCGTACTGGGTAAGGCCGGAGCAGAATGCCACAGTAACCACCTTCTaGTCTCAACCCACAGGCAAGTCTCCGCCTCTGTGGTTCCACTTC | + |
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Preference number: 1 (lower is better) Translates to: AYWVRPEQNATVTTF*SQPTGKSPPLWFHF Trigger: GAAGTGGAACCACAGAGGCGGAGACTTGCCTGTGGGTTGAGAGCAGAAGGTGGTTACTGTGGCATTCTGCTCCGGCCTTACCCAGTACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CCA 90 bp | AGCGCGTGGGCCATCGGACTTGCCTTTGGAATGACCAGCTTTATTTaGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAGG | + |
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Preference number: 1 (lower is better) Translates to: SAWAIGLAFGMTSFI*LGVLVRTAGQLAHR Trigger: CCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCCACGCGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CCA 90 bp | GTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAGGTTTGCATCCTaGAATTCTTCATCTAAAGAACAGCAGGGAGGCACTCTGTGTTGT | + |
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Preference number: 1 (lower is better) Translates to: VLVRTAGQLAHRFAS*NSSSKEQQGGTLCC Trigger: ACAACACAGAGTGCCTCCCTGCTGTTCTTTAGATGAAGAATTCCAGGATGCAAACCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR TCA 90 bp | ACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTTGTTGTCGACCAACACCCCTGCTaGGCTGGCCTTAGCCCCAGC | + |
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Preference number: 2 (lower is better) Translates to: TRFVDQAGLELRDLPLVVDQHPC*AGLSPS Trigger: GCTGGGGCTAAGGCCAGCTCAGCAGGGGTGTTGGTC...GACAACAAGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| 3UTR CAA 90 bp | AAGCGCGTGGGCCATCGGACTTGCCTTTGGAATGACCAGCTTTATTaGGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAG | + |
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Preference number: 2 (lower is better) Translates to: KRVGHRTCLWNDQLY*VGGFGEDGRTASPQ Trigger: CTGTGGGCTAGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCCACGCGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CAA 90 bp | GCGTGGGCCATCGGACTTGCCTTTGGAATGACCAGCTTTATTTGGTaGGGGGTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: AWAIGLAFGMTSFIW*GVLVRTAGQLAHRF Trigger: AAACCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCCACGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGTAAGGCCGGAGCAGAATGCCACAGTAACCACCTTCTGCTCTCAACCCACAAGGCACTCTGTGTTGTaGCAAACCTACAAAGCGATC | + |
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Preference number: 2 (lower is better) Translates to: WVRPEQNATVTTFCSQPTRHSVL*QTYKAI Trigger: GATCGCTTTGTAGGTTTGCCACAACACAGAGTGCCT...TGTGGGTTGAGAGCAGAAGGTGGTTACTGTGGCATTCTGCTCCGGCCTTACCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR GCA 90 bp | CCCAGTACAGACCGTGGACTGAAGCGCGTGGGCCATCGGACTTGCCTTTGGAATTCTCATCAGAGCTATTaGCCTACTTCAAATACTTAT | + |
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Preference number: 2 (lower is better) Translates to: PSTDRGLKRVGHRTCLWNSHQSY*PTSNTY Trigger: ATAAGTATTTGAAGTAGGGCAATAGCTCTGATGAGA...ATTCCAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR GCA 90 bp | ATAAATACTGAACATCTGAAAAGGCTGACAAATCAAACGGGAACGATGACAGGCGCTAGCCCACAGGTTTaGATCCTGGAATTCTTCATC | + |
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Preference number: 2 (lower is better) Translates to: INTEHLKRLTNQTGTMTGASPQV*ILEFFI Trigger: GATGAAGAATTCCAGGATGCAAACCTGTGGGCTAGC...GCCTGTCATCGTTCCCGTTTGATTTGTCAGCCTTTTCAGATGTTCAGTATTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CAA 90 bp | CACTCTGTGTTGTGGCAAACCTACAAAGCGATCTCATCAGAGCTATaGCCCTACTTCAAATACTTATTAAATTTCAATCCGAGAGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: HSVLWQTYKAISSEL*PYFKYLLNFNPRVL Trigger: CAAAACTCTCGGATTGAAATTTAATAAGTATTTGAAGTAGGGCAATAGCTCTGATGAGATCGCTTTGTAGGTTTGCCACAACACAGAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR TCA 90 bp | GCCCTAAATGAGATAAAGGTTCAGGCTATAGCTAAGTATTTGACCAAAACATTTTCTCATCTTCCCCCATaGGACGAATGTTGTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: ALNEIKVQAIAKYLTKTFSHLPP*DECCAF Trigger: AAAAGCACAACATTCGTCTCATGGGGGAAGATGAGA...AAATGTTTTGGTCAAATACTTAGCTATAGCCTGAACCTTTATCTCATTTAGGGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| 3UTR CCA 72 bp | TCCGCCTCTGTGGTTCCACTTCCCCAGTACAGACCGTaGACTGAAGCGCGTGGGCCATCGGACTTGCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: SASVVPLPQYRP*TEARGPSDLPL Trigger: CAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR TCA 72 bp | CTCTGTGGTTCCACTTCCCCAGTACAGACCGTGGACTaGAGCGCGTGGGCCATCGGACTTGCCTTTGGAATG | + |
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Preference number: 3 (lower is better) Translates to: LCGSTSPVQTVD*SAWAIGLAFGM Trigger: CATTCCAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CCA 72 bp | TTCTGCTCTCAACCCACAGGCAAGTCTCCGCCTCTGTaGTTCCACTTCCCCAGTACAGACCGTGGACTGAAG | + |
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Preference number: 3 (lower is better) Translates to: FCSQPTGKSPPL*FHFPSTDRGLK Trigger: CTTCAGTCCACGGTCTGTACTGGGGAAGTGGAACCACAGAGGCGGAGACTTGCCTGTGGGTTGAGAGCAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR GCA 72 bp | ACAGACCGTGGACTGAAGCGCGTGGGCCATCGGACTTaGCTTTGGAATGACCAGCTTTATTTGGTTGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: TDRGLKRVGHRT*LWNDQLYLVGG Trigger: ACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR CCA 72 bp | GCCATCGGACTTGCCTTTGGAATGACCAGCTTTATTTaGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCTA | + |
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Preference number: 3 (lower is better) Translates to: AIGLAFGMTSFI*LGVLVRTAGQL Trigger: TAGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| 3UTR-3UTR CAA 90 bp | CATGTGTGGCACCACACCCAGCTCTATGAGGTCGGTGTAGCCCTAAATGAGATACCCATGAGACGAATGTaGTGCTTTTCCCGGAATTCG | + |
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Preference number: 3 (lower is better) Translates to: HVWHHTQLYEVGVALNEIPMRRM*CFSRNS Trigger: CGAATTCCGGGAAAAGCACAACATTCGTCTCATGGG...TATCTCATTTAGGGCTACACCGACCTCATAGAGCTGGGTGTGGTGCCACACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR TCA 90 bp | TTGGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCTAGCCCACAGGTTTGCATCGACCAACACCCCTGCTaGGCTGGCCTTAGCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LVGGFGEDGRTASPQVCIDQHPC*AGLSPS Trigger: GCTGGGGCTAAGGCCAGCTCAGCAGGGGTGTTGGTC...GATGCAAACCTGTGGGCTAGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | CCCAGTACAGACCGTGGACTGAAGCGCGTGGGCCATCGGACTTGCCTTTGGAATCAGGCAGCACTTCTTTaGCAGTCCGCTCCACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PSTDRGLKRVGHRTCLWNQAALL*QSAPPA Trigger: TGCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTG...ATTCCAAAGGCAAGTCCGATGGCCCACGCGCTTCAGTCCACGGTCTGTACTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CATGTGTGGCACCACACCCAGCTCTATGAGGTCGGTGTAGCCCTAAATGAGATACAGGTCTCCCTCCTCTaGCCCGGACTGTGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: HVWHHTQLYEVGVALNEIQVSLL*PGLCCS Trigger: GGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTG...TATCTCATTTAGGGCTACACCGACCTCATAGAGCTGGGTGTGGTGCCACACATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR TCA 90 bp | ACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTTCTTTGCCCTTTGCCTaGAGCTGCTGTGACAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: TGNSICRPGWPGTPRSASSLPFA*SCCDSV Trigger: GACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGA...AGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | TGGATTACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTTGTGCTGCTCCTTGTTaGCCTCCAAGGCAGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: WITGNSICRPGWPGTPRSCAAPC*PPRQAA Trigger: TGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACA...AGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGTAATCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR GCA 90 bp | TGTCACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCACCACACCCAGCTCTCTCTGCCCCGGACTGTaGTGCTCCTTGTTGCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: CHPSTKIIKGMCGTTPSSLCPGL*CSLLPS Trigger: GGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAG...AGAGCTGGGTGTGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| 3UTR CAA 72 bp | GGCCATCGGACTTGCCTTTGGAATGACCAGCTTTATTaGGTTGGGGGTTTTGGTGAGGACGGCAGGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: GHRTCLWNDQLY*VGGFGEDGRTA Trigger: AGCTGTCCTGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAGTCCGATGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | TGGATTACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGTATCTGCTCCTTGTTaGCCTCCAAGGCAGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: WITGNSICRPGWPGTPRSVSAPC*PPRQAA Trigger: TGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGATAC...AGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGTAATCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | TGTCACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCACCACACCCAGCTCTCAGGCAGCACTTCTTTaGCAGTCCGCTCCACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: CHPSTKIIKGMCGTTPSSQAALL*QSAPPA Trigger: TGCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTG...AGAGCTGGGTGTGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | AAACCCGCAGAGGCCTTAGCTCCTAAGAGACCAACACCCCTGCTGAGCTGGCCTGTGACAGTGTCTCAATaGTCTTCTGTATCTAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: KPAEALAPKRPTPLLSWPVTVSQ*SSVSKR Trigger: CCTCTTAGATACAGAAGATCATTGAGACACTGTCAC...AGGCCAGCTCAGCAGGGGTGTTGGTCTCTTAGGAGCTAAGGCCTCTGCGGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR TCA 90 bp | GGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTTGTTGCCTGAAGCTGCTGTaGCAGTGTCTCAATGATCTT | + |
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Preference number: 4 (lower is better) Translates to: GNSICRPGWPGTPRSASCCLKLL*QCLNDL Trigger: AAGATCATTGAGACACTGTCACAGCAGCTTCAGGCA...ACAAGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | AACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTTGTTGTTCTTTGCCCTTTGCCTaGAGCTGCTGTGACAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: NSICRPGWPGTPRSASCCSLPFA*SCCDSV Trigger: GACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGA...ACAACAAGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | GGATTACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGTCGATCACCAGGCTGTaGTCATTCAATTCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: GLLGTRFVDQAGLELRDLSITRL*SFNSIS Trigger: GGAGATGGAATTGAATGAGCACAGCCTGGTGATCGA...CAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGTAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CTGCCTCTTGTTGTCACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCACCAGCACACCTCCAACCATaGGGTAGCACTTGCGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: LPLVVTQALRLLKACVAPAHLQP*GSTCGS Trigger: AGACCCGCAAGTGCTACCGCATGGTTGGAGGTGTGC...TGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACAACAAGAGGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | TGGATTACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTTGCCTGAAGCTGCTGTaGCAGTGTCTCAATGATCTT | + |
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Preference number: 4 (lower is better) Translates to: WITGNSICRPGWPGTPRSCLKLL*QCLNDL Trigger: AAGATCATTGAGACACTGTCACAGCAGCTTCAGGCA...AGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGTAATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CTGCCTCTTGTTGTCACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCACCACATCTCCAGCTCAGCTaGTTTGGAAGCCAAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LPLVVTQALRLLKACVAPHLQLS*FGSQAP Trigger: AGGGGCTTGGCTTCCAAAGCAGCTGAGCTGGAGATG...TGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACAACAAGAGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | AACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTTGTTGTTCTCATCTTCCCCCATaGGACGAATGTTGTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: NSICRPGWPGTPRSASCCSHLPP*DECCAF Trigger: AAAAGCACAACATTCGTCTCATGGGGGAAGATGAGA...ACAACAAGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | AGATCTGCCTCTTGTTGTCACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCCATCTCCAGCTCAGCTaGTTTGGAAGCCAAGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: RSASCCHPSTKIIKGMCGHLQLS*FGSQAP Trigger: AGGGGCTTGGCTTCCAAAGCAGCTGAGCTGGAGATG...GCCACACATGCCTTTAATAATCTTAGTGCTTGGGTGACAACAAGAGGCAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | TTGAGACAGGGTCTCACTGTGTCTATATATAGCCTTGGATTACTGGGAACTCGACCATGCGGTAGCACTTaGGGGTCTCATCCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LRQGLTVSIYSLGLLGTRPCGST*GSHPLP Trigger: AGGAAGTGGATGAGACCCGCAAGTGCTACCGCATGG...TCGAGTTCCCAGTAATCCAAGGCTATATATAGACACAGTGAGACCCTGTCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CATGTGTGGCACCACACCCAGCTCTATGAGGTCGGTGTAGCCCTAAATGAGATAATGATCTTCTGTATCTaGTCCTTGTTGCCCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: HVWHHTQLYEVGVALNEIMIFCI*SLLPSK Trigger: CTTGGAGGGCAACAAGGAGCAGATACAGAAGATCAT...TATCTCATTTAGGGCTACACCGACCTCATAGAGCTGGGTGTGGTGCCACACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGGGAGGCACTCTGTGTTGTGGCAAACCTACAAAGCGATCTCATCAGAGCATGAGACGAATGTTGTaGTTTTCCCGGAATTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: QQGGTLCCGKPTKRSHQSMRRML*FSRNSF Trigger: GAACGAATTCCGGGAAAAGCACAACATTCGTCTCAT...GCTCTGATGAGATCGCTTTGTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR TCA 90 bp | CTTGCCTTTGGAATGACCAGCTTTATTTGGTTGGGGGTTTTGGTGAGGACGGCAGTGACAGTGTCTCAATaGTCTTCTGTATCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LAFGMTSFIWLGVLVRTAVTVSQ*SSVSAP Trigger: AGGAGCAGATACAGAAGATCATTGAGACACTGTCAC...TGCCGTCCTCACCAAAACCCCCAACCAAATAAAGCTGGTCATTCCAAAGGCAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CACCCAAGCACTAAGATTATTAAAGGCATGTGTGGCACCACACCCAGCTCTATGTCGATCACCAGGCTGTaGTCATTCAATTCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: HPSTKIIKGMCGTTPSSMSITRL*SFNSIS Trigger: GGAGATGGAATTGAATGAGCACAGCCTGGTGATCGA...CATAGAGCTGGGTGTGGTGCCACACATGCCTTTAATAATCTTAGTGCTTGGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | TTTTACTTATATAAGTGCCCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCGCACACCTCCAACCATaGGGTAGCACTTGCGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: FYLYKCPICMYTFVPEEGAHLQP*GSTCGS Trigger: AGACCCGCAAGTGCTACCGCATGGTTGGAGGTGTGC...GCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGCACTTATATAAGTAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | GCCCTAAATGAGATAAAGGTTCAGGCTATAGCTAAGTATTTGACCAAAACATTTAGGATGGAGAAGGAGTaGAGGTCTCCCTCCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ALNEIKVQAIAKYLTKTFRMEKE*RSPSSA Trigger: GGCAGAGGAGGGAGACCTGCACTCCTTCTCCATCCT...AAATGTTTTGGTCAAATACTTAGCTATAGCCTGAACCTTTATCTCATTTAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| 3UTR CAA 72 bp | TTTACTTATATAAGTGCCCTATTTGCATGTACACCTTaGTGCCAGAAGAGGGCATCAGACCCCATTATAGAT | + |
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Preference number: 4 (lower is better) Translates to: FTYISALFACTP*CQKRASDPIID Trigger: ATCTATAATGGGGTCTGATGCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGCACTTATATAAGTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR GCA 90 bp | CATCAAATAAACAGATTACTTTATTTGCAAAGGAAAGACCGAACTGAGGTTCCTATTCGTTCAGTTCTTTaGCCTTTGCCTGAAGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HQINRLLYLQRKDRTEVPIRSVL*PLPEAA Trigger: AGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAAT...AGGAACCTCAGTTCGGTCTTTCCTTTGCAAATAAAGTAATCTGTTTATTTGATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS GCA 90 bp | GATGGAGAAGGAGTGCAGGTCTCCCTCCTCTGCCCCGGACTGTGCTaGTCCTTGTTGCCCTCCAAGGCAGGCAGCACTTCTTTGACAGTC | + |
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Preference number: 5 (lower is better) Translates to: DGEGVQVSLLCPGLC*SLLPSKAGSTSLTV Trigger: GACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTGCACTCCTTCTCCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS TCA 90 bp | GACTGTGCTGCTCCTTGTTGCCCTCCAAGGCAGGCAGCACTTCTTTaGCAGTCCGCTCCACCAGCACACCTCCAACCATGCGGTAGCACT | + |
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Preference number: 5 (lower is better) Translates to: DCAAPCCPPRQAALL*QSAPPAHLQPCGST Trigger: AGTGCTACCGCATGGTTGGAGGTGTGCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR CAA 90 bp | ACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGCCTCTGCAGGCAGCACTTCTTaGACAGTCCGCTCCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: TGNSICRPGWPGTPRSASAGSTS*TVRSTS Trigger: GCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTGC...AGAGGCAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR CAA 90 bp | GGATTACTGGGAACTCGATTTGTAGACCAGGCTGGCCTGGAACTCCGAGATCTGGGACTGTGCTGCTCCTaGTTGCCCTCCAAGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: GLLGTRFVDQAGLELRDLGLCCS*LPSKAG Trigger: GCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCC...CAGATCTCGGAGTTCCAGGCCAGCCTGGTCTACAAATCGAGTTCCCAGTAATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS TCA 90 bp | TCTGTATCTGCTCCTTGTTGCCCTCCAAGGCAGGCAGCACTTCTTTaGCAGTCCGCTCCACCAGCACACCTCCAACCATGCGGTAGCACT | + |
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Preference number: 5 (lower is better) Translates to: SVSAPCCPPRQAALL*QSAPPAHLQPCGST Trigger: AGTGCTACCGCATGGTTGGAGGTGTGCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGATACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR CAA 90 bp | CAGCAGGGAGGCACTCTGTGTTGTGGCAAACCTACAAAGCGATCTCATCAGAGCTGTATCTGCTCCTTGTaGCCCTCCAAGGCAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QQGGTLCCGKPTKRSHQSCICSL*PSKAGS Trigger: GCTGCCTGCCTTGGAGGGCAACAAGGAGCAGATACA...GCTCTGATGAGATCGCTTTGTAGGTTTGCCACAACACAGAGTGCCTCCCTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS-3UTR CAA 90 bp | TTGAGACAGGGTCTCACTGTGTCTATATATAGCCTTGGATTACTGGGAACTCGACTGTGCTGCTCCTTGTaGCCCTCCAAGGCAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LRQGLTVSIYSLGLLGTRLCCSL*PSKAGS Trigger: GCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAG...TCGAGTTCCCAGTAATCCAAGGCTATATATAGACACAGTGAGACCCTGTCTCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR CAA 90 bp | GCTGGCTTCTCATCTTCCCCCATGAGACGAATGTTGTGCTTTTCCCGGAATTCGTCAGTTCTTTGCCCTTaGCCTGAAGCTGCTGTGACA | + |
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Preference number: 5 (lower is better) Translates to: AGFSSSPMRRMLCFSRNSSVLCP*PEAAVT Trigger: TGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGA...CGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGGGAAGATGAGAAGCCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS TCA 90 bp | TTCCCGGAATTCGTTCAGTTCTTTGCCCTTTGCCTGAAGCTGCTGTaGCAGTGTCTCAATGATCTTCTGTATCTGCTCCTTGTTGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: FPEFVQFFALCLKLL*QCLNDLLYLLLVAL Trigger: GAGGGCAACAAGGAGCAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCCGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS TCA 90 bp | ATGTTGTGCTTTTCCCGGAATTCGTTCAGTTCTTTGCCCTTTGCCTaGAGCTGCTGTGACAGTGTCTCAATGATCTTCTGTATCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: MLCFSRNSFSSLPFA*SCCDSVSMIFCICS Trigger: GGAGCAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCCGGGAAAAGCACAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS TCA 90 bp | TCAGTTCTTTGCCCTTTGCCTGAAGCTGCTGTGACAGTGTCTCAATaGTCTTCTGTATCTAAGAGGCAAAAGAGAGGATGGAGAAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: SVLCPLPEAAVTVSQ*SSVSKRQKRGWRRS Trigger: ACTCCTTCTCCATCCTCTCTTTTGCCTCTTAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS-3UTR CAA 90 bp | GCCCTAAATGAGATAAAGGTTCAGGCTATAGCTAAGTATTTGACCAAAACATTTGCAGGCAGCACTTCTTaGACAGTCCGCTCCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: ALNEIKVQAIAKYLTKTFAGSTS*TVRSTS Trigger: GCTGGTGGAGCGGACTGTCAAAGAAGTGCTGCCTGC...AAATGTTTTGGTCAAATACTTAGCTATAGCCTGAACCTTTATCTCATTTAGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS-3UTR CAA 90 bp | TTTTACTTATATAAGTGCCCTATTTGCATGTACACCTTTGTGCCAGAAGAGGGCCCCATGAGACGAATGTaGTGCTTTTCCCGGAATTCG | + |
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Preference number: 5 (lower is better) Translates to: FYLYKCPICMYTFVPEEGPMRRM*CFSRNS Trigger: CGAATTCCGGGAAAAGCACAACATTCGTCTCATGGG...GCCCTCTTCTGGCACAAAGGTGTACATGCAAATAGGGCACTTATATAAGTAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS CAA 90 bp | GGAGTGCAGGTCTCCCTCCTCTGCCCCGGACTGTGCTGCTCCTTGTaGCCCTCCAAGGCAGGCAGCACTTCTTTGACAGTCCGCTCCACC | + |
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Preference number: 6 (lower is better) Translates to: GVQVSLLCPGLCCSL*PSKAGSTSLTVRST Trigger: GGTGGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTGCACTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS CAA 90 bp | GAAGGAGTGCAGGTCTCCCTCCTCTGCCCCGGACTGTGCTGCTCCTaGTTGCCCTCCAAGGCAGGCAGCACTTCTTTGACAGTCCGCTCC | + |
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Preference number: 6 (lower is better) Translates to: EGVQVSLLCPGLCCS*LPSKAGSTSLTVRS Trigger: GGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTGCACTCCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS GCA 72 bp | AGAGAGGATGGAGAAGGAGTGCAGGTCTCCCTCCTCTaGCCCGGACTGTGCTGCTCCTTGTTGCCCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: REDGEGVQVSLL*PGLCCSLLPSK Trigger: CTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTGCACTCCTTCTCCATCCTCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS CAA 72 bp | GTCTCCCTCCTCTGCCCCGGACTGTGCTGCTCCTTGTaGCCCTCCAAGGCAGGCAGCACTTCTTTGACAGTC | + |
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Preference number: 6 (lower is better) Translates to: VSLLCPGLCCSL*PSKAGSTSLTV Trigger: GACTGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS CAA 72 bp | CAGGTCTCCCTCCTCTGCCCCGGACTGTGCTGCTCCTaGTTGCCCTCCAAGGCAGGCAGCACTTCTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: QVSLLCPGLCCS*LPSKAGSTSLT Trigger: TGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGCACAGTCCGGGGCAGAGGAGGGAGACCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS GCA 72 bp | GCTCCACCAGCACACCTCCAACCATGCGGTAGCACTTaGGGGTCTCATCCACTTCCTTCAGTGTATCGATCA | + |
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Preference number: 6 (lower is better) Translates to: APPAHLQPCGST*GSHPLPSVYRS Trigger: TGATCGATACACTGAAGGAAGTGGATGAGACCCGCAAGTGCTACCGCATGGTTGGAGGTGTGCTGGTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS GCA 72 bp | AGCTCAGCTGCTTTGGAAGCCAAGCCCCTCTGTTCCTaGCGAAGGCGATTAAAGCCAGCAATTACCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSAALEAKPLCS*RRRLKPAITCS Trigger: GGAACAGGTAATTGCTGGCTTTAATCGCCTTCGGCAGGAACAGAGGGGCTTGGCTTCCAAAGCAGCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000006579.5 ENSMUST00000135941.8 |
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| CDS TCA 72 bp | TGCCCTTTGCCTGAAGCTGCTGTGACAGTGTCTCAATaGTCTTCTGTATCTGCTCCTTGTTGCCCTCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: CPLPEAAVTVSQ*SSVSAPCCPPR Trigger: CCTTGGAGGGCAACAAGGAGCAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS GCA 72 bp | AGCTGCTGTGACAGTGTCTCAATGATCTTCTGTATCTaGTCCTTGTTGCCCTCCAAGGCAGGCAGCACTTCT | + |
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Preference number: 6 (lower is better) Translates to: SCCDSVSMIFCI*SLLPSKAGSTS Trigger: AGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGATACAGAAGATCATTGAGACACTGTCACAGCAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS CAA 72 bp | GCTGCTGGCTTCTCATCTTCCCCCATGAGACGAATGTaGTGCTTTTCCCGGAATTCGTTCAGTTCTTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: AAGFSSSPMRRM*CFSRNSFSSLP Trigger: GGGCAAAGAACTGAACGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGGGAAGATGAGAAGCCAGCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS GCA 72 bp | GCTGGCTTCTCATCTTCCCCCATGAGACGAATGTTGTaGTTTTCCCGGAATTCGTTCAGTTCTTTGCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: AGFSSSPMRRML*FSRNSFSSLPF Trigger: AAAGGGCAAAGAACTGAACGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGGGAAGATGAGAAGCCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS CAA 72 bp | TGTGACAGTGTCTCAATGATCTTCTGTATCTGCTCCTaGTTGCCCTCCAAGGCAGGCAGCACTTCTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: CDSVSMIFCICS*LPSKAGSTSLT Trigger: TGTCAAAGAAGTGCTGCCTGCCTTGGAGGGCAACAAGGAGCAGATACAGAAGATCATTGAGACACTGTCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS TCA 72 bp | TGCCCTTTGCCTGAAGCTGCTGTGACAGTGTCTCAATaGTCTTCTGTATCTAAGAGGCAAAAGAGAGGATGG | + |
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Preference number: 6 (lower is better) Translates to: CPLPEAAVTVSQ*SSVSKRQKRGW Trigger: CCATCCTCTCTTTTGCCTCTTAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006579.5 |
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| CDS GCA 72 bp | GAATGTTGTGCTTTTCCCGGAATTCGTTCAGTTCTTTaGCCTTTGCCTGAAGCTGCTGTGACAGTGTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: ECCAFPGIRSVL*PLPEAAVTVSQ Trigger: TTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCCGGGAAAAGCACAACATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS TCA 72 bp | TTCGTTCAGTTCTTTGCCCTTTGCCTGAAGCTGCTGTaGCAGTGTCTCAATGATCTTCTGTATCTGCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: FVQFFALCLKLL*QCLNDLLYLLL Trigger: AAGGAGCAGATACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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| CDS TCA 72 bp | TTTTCCCGGAATTCGTTCAGTTCTTTGCCCTTTGCCTaGAGCTGCTGTGACAGTGTCTCAATGATCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: FSRNSFSSLPFA*SCCDSVSMIFC Trigger: ACAGAAGATCATTGAGACACTGTCACAGCAGCTTCAGGCAAAGGGCAAAGAACTGAACGAATTCCGGGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135941.8 |
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