Pregenerated sensors for PFDN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024346Ensembl transcript IDs: ENSMUST00000025204.7, ENSMUST00000237499.2, ENSMUST00000237792.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCTGCAGTAAAGTTCCTGAAAGTTGCACAGAGAATGAGCTGTCCTaGGCACTAGGAGGCAGGGCCACGGGCGCACCATGGCCAGACAGG | + |
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Preference number: 1 (lower is better) Translates to: TCSKVPESCTENELS*ALGGRATGAPWPDR Trigger: CCTGTCTGGCCATGGTGCGCCCGTGGCCCTGCCTCCTAGTGCTCAGGACAGCTCATTCTCTGTGCAACTTTCAGGAACTTTACTGCAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR GCA 90 bp | GGCCACGGGCGCACCATGGCCAGACAGGACCAGAGCCTAGAGATGCTGCTCGCCGGGAGGGCAGTACCCTaGACAGCCCCTGCCGTGACA | + |
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Preference number: 2 (lower is better) Translates to: GHGRTMARQDQSLEMLLAGRAVP*TAPAVT Trigger: TGTCACGGCAGGGGCTGTGCAGGGTACTGCCCTCCC...GGCGAGCAGCATCTCTAGGCTCTGGTCCTGTCTGGCCATGGTGCGCCCGTGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGGGCCACGGGCGCACCATGGCCAGACAGGACCAGAGCCTAGAGATGCTGCTCATTCAGTTGGGACCTaGGGGGCTCAGGGTGATGGA | + |
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Preference number: 2 (lower is better) Translates to: AGPRAHHGQTGPEPRDAAHSVGT*GAQGDG Trigger: TCCATCACCCTGAGCCCCTCAGGTCCCAACTGAATG...AGCAGCATCTCTAGGCTCTGGTCCTGTCTGGCCATGGTGCGCCCGTGGCCCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR GCA 90 bp | CAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGGGGGGAGGGCAGTACCCTaGACAGCCCCTGCCGTGACA | + |
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Preference number: 2 (lower is better) Translates to: QLVVFFLHALHRGPGQKGGRAVP*TAPAVT Trigger: TGTCACGGCAGGGGCTGTGCAGGGTACTGCCCTCCC...CCCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR TCA 90 bp | ACCATGGCCAGACAGGACCAGAGCCTAGAGATGCTGCTCGCCACTGAACTTTGTCATTCAGTTGGGACCTaGGGGGCTCAGGGTGATGGA | + |
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Preference number: 2 (lower is better) Translates to: TMARQDQSLEMLLATELCHSVGT*GAQGDG Trigger: TCCATCACCCTGAGCCCCTCAGGTCCCAACTGAATG...ACAAAGTTCAGTGGCGAGCAGCATCTCTAGGCTCTGGTCCTGTCTGGCCATGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR TCA 90 bp | CACCTATCAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACACAGTCCTCCCTCTGTTaGGAGCTCCTGGCTTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: HLSTCRLLPPCSTQRPRTQSSLC*ELLACP Trigger: GGGGCAAGCCAGGAGCTCTCAACAGAGGGAGGACTG...TGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTGATAGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCTCTGTCCACCACACCTATCAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGTCCTCCCTCTGTTaGGAGCTCCTGGCTTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: CLCPPHLSTCRLLPPCSTQSSLC*ELLACP Trigger: GGGGCAAGCCAGGAGCTCTCAACAGAGGGAGGACTG...TGTAGAGCATGGAGGAAGAAGACGACAAGTTGATAGGTGTGGTGGACAGAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR GCA 90 bp | GTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGGGGAGGAAACAGCTTTCTCCATCTaGCCTCCAGTCCTCCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: VVFFLHALHRGPGQKGEETAFSI*PPVLPL Trigger: CAGAGGGAGGACTGGAGGGCAGATGGAGAAAGCTGT...TTCCTCCCCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR GCA 90 bp | CAACTGTGCCTCTGTCCACCACACCTATCAACTTGTCGTCTTCTTCCTCCATGCACAGCTTTCTCCATCTaGCCTCCAGTCCTCCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: QLCLCPPHLSTCRLLPPCTAFSI*PPVLPL Trigger: CAGAGGGAGGACTGGAGGGCAGATGGAGAAAGCTGT...GCATGGAGGAAGAAGACGACAAGTTGATAGGTGTGGTGGACAGAGGCACAGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR CAA 90 bp | TCAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGGCCAGTCCTCCCTCTGTaGAGAGCTCCTGGCTTGCCC | + |
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Preference number: 3 (lower is better) Translates to: STCRLLPPCSTQRPRTERPVLPL*RAPGLP Trigger: GGGCAAGCCAGGAGCTCTCAACAGAGGGAGGACTGG...CCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR TCA 72 bp | AAAGTTCCTGAAAGTTGCACAGAGAATGAGCTGTCCTaGGCACTAGGAGGCAGGGCCACGGGCGCACCATGG | + |
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Preference number: 3 (lower is better) Translates to: KVPESCTENELS*ALGGRATGAPW Trigger: CCATGGTGCGCCCGTGGCCCTGCCTCCTAGTGCTCAGGACAGCTCATTCTCTGTGCAACTTTCAGGAACTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR CAA 90 bp | GGTCTAACCCACATGCCTAGTGACAGGCTTGGACAGCTTTCTCCATCTGCCCTCTTGAGAGCTCCTGGCTaGCCCCAGGAAAGAAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: GLTHMPSDRLGQLSPSALLRAPG*PQERRV Trigger: CACTCTTCTTTCCTGGGGCAAGCCAGGAGCTCTCAA...GAGGGCAGATGGAGAAAGCTGTCCAAGCCTGTCACTAGGCATGTGGGTTAGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR GCA 72 bp | CCACCACACCTATCAACTTGTCGTCTTCTTCCTCCATaGTCTACACAGAGGCCCAGGACAGAAAGGGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: PPHLSTCRLLPP*STQRPRTERGG Trigger: TCCTCCCCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTGATAGGTGTGGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR-3UTR CAA 90 bp | ATCAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGTTGGCAGACATTCAGTaGGGACCTGAGGGGCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: INLSSSSSMLYTEAQDRKLADIQ*GPEGLR Trigger: CCTGAGCCCCTCAGGTCCCAACTGAATGTCTGCCAA...CTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR CAA 72 bp | GAAGAGTGTCCTGAGCAGGGGTTGGCAGACATTCAGTaGGGACCTGAGGGGCTCAGGGTGATGGAGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: EECPEQGLADIQ*GPEGLRVMERW Trigger: CCATCTCTCCATCACCCTGAGCCCCTCAGGTCCCAACTGAATGTCTGCCAACCCCTGCTCAGGACACTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025204.7 ENSMUST00000237499.2 ENSMUST00000237792.2 |
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| CDS-3UTR TCA 90 bp | GGGTTGGCAGACATTCAGTTGGGACCTGAGGGGCTCAGGGTGATGGAGAGATGGTGGCTTGAAGCTCTGTaGAGGCCTTCTTCAACTCCA | + |
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Preference number: 4 (lower is better) Translates to: GLADIQLGPEGLRVMERWWLEAL*RPSSTP Trigger: TGGAGTTGAAGAAGGCCTTCACAGAGCTTCAAGCCA...CCATCTCTCCATCACCCTGAGCCCCTCAGGTCCCAACTGAATGTCTGCCAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| CDS-3UTR TCA 90 bp | AAGAGTGTCCTGAGCAGGGGTTGGCAGACATTCAGTTGGGACCTGAGGGGCTCATGGCTTGAAGCTCTGTaGAGGCCTTCTTCAACTCCA | + |
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Preference number: 4 (lower is better) Translates to: KSVLSRGWQTFSWDLRGSWLEAL*RPSSTP Trigger: TGGAGTTGAAGAAGGCCTTCACAGAGCTTCAAGCCA...TGAGCCCCTCAGGTCCCAACTGAATGTCTGCCAACCCCTGCTCAGGACACTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| 3UTR CAA 72 bp | AAGCCAACTGTGCCTCTGTCCACCACACCTATCAACTaGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KPTVPLSTTPIN*SSSSSMLYTEA Trigger: GGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTGATAGGTGTGGTGGACAGAGGCACAGTTGGCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| CDS-3UTR TCA 90 bp | GTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGGGGAGGAATCGATAACTTTGGCTTaGAGCTCTGTGAAGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: VVFFLHALHRGPGQKGEESITLA*SSVKAF Trigger: GAAGGCCTTCACAGAGCTTCAAGCCAAAGTTATCGA...TTCCTCCCCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| CDS-3UTR TCA 90 bp | CAGGACCAGAGCCTAGAGATGCTGCTCGCCACTGAACTTTGTTTTAGAATTCTGTCGATAACTTTGGCTTaGAGCTCTGTGAAGGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QDQSLEMLLATELCFRILSITLA*SSVKAF Trigger: GAAGGCCTTCACAGAGCTTCAAGCCAAAGTTATCGA...CAGAATTCTAAAACAAAGTTCAGTGGCGAGCAGCATCTCTAGGCTCTGGTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| CDS-3UTR CAA 90 bp | CAACTTGTCGTCTTCTTCCTCCATGCTCTACACAGAGGCCCAGGACAGAAAGGGATCGATAACTTTGGCTaGAAGCTCTGTGAAGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QLVVFFLHALHRGPGQKGIDNFG*KLCEGL Trigger: AAGGCCTTCACAGAGCTTCAAGCCAAAGTTATCGAT...CCCTTTCTGTCCTGGGCCTCTGTGTAGAGCATGGAGGAAGAAGACGACAAGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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| CDS-3UTR CAA 90 bp | CAGGACCAGAGCCTAGAGATGCTGCTCGCCACTGAACTTTGTTTTAGAATTCTGATCGATAACTTTGGCTaGAAGCTCTGTGAAGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QDQSLEMLLATELCFRILIDNFG*KLCEGL Trigger: AAGGCCTTCACAGAGCTTCAAGCCAAAGTTATCGAT...CAGAATTCTAAAACAAAGTTCAGTGGCGAGCAGCATCTCTAGGCTCTGGTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025204.7 ENSMUST00000237792.2 |
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