Pregenerated sensors for PF4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029373

Ensembl transcript IDs: ENSMUST00000031320.8, ENSMUST00000202625.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	TTACAGATCCTTGGTTGGAAGAAGGGAAGAGATGGGAAGGAACAGGTAGCAGAGTCCAGGCTGGTGATGTaGTTAAGATGGATCCCAGAG	+
Preference number: 4 (lower is better) Translates to: LQILGWKKGRDGKEQVAESRLVM*LRWIPE Trigger: CTCTGGGATCCATCTTAAGCACATCACCAGCCTGGA...CTCTGCTACCTGTTCCTTCCCATCTCTTCCCTTCTTCCAACCAAGGATCTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202625.2
CDS-3UTR CCA 90 bp	GGAATTGCTTTACAGATCCTTGGTTGGAAGAAGGGAAGAGATGGGAAGGAACAGGGATCCCAGAGGAGATaGTCTTCACACACACACAGC	+
Preference number: 4 (lower is better) Translates to: GIALQILGWKKGRDGKEQGSQRR*SSHTHS Trigger: GCTGTGTGTGTGTGAAGACCATCTCCTCTGGGATCC...CTGTTCCTTCCCATCTCTTCCCTTCTTCCAACCAAGGATCTGTAAAGCAATTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202625.2
CDS-3UTR TCA 90 bp	ATTAAAAGTAGACAAGATTCCAGGAGTCTTGTAACACAATTGACATTTAGGCAGTCTTCAGGGTGGCTATaGGCTGGGGAACCGCACAGT	+
Preference number: 4 (lower is better) Translates to: IKSRQDSRSLVTQLTFRQSSGWL*AGEPHS Trigger: ACTGTGCGGTTCCCCAGCTCATAGCCACCCTGAAGA...CTGCCTAAATGTCAATTGTGTTACAAGACTCCTGGAATCTTGTCTACTTTTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031320.8
CDS-3UTR CCA 90 bp	ATTAAAAGTAGACAAGATTCCAGGAGTCTTGTAACACAATTGACATTTAGGCAGGGATCCCAGAGGAGATaGTCTTCACACACACACAGC	+
Preference number: 4 (lower is better) Translates to: IKSRQDSRSLVTQLTFRQGSQRR*SSHTHS Trigger: GCTGTGTGTGTGTGAAGACCATCTCCTCTGGGATCC...CTGCCTAAATGTCAATTGTGTTACAAGACTCCTGGAATCTTGTCTACTTTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031320.8
CDS-3UTR GCA 90 bp	TATAAACATCGGAAGATTGCAGTTACATTAAAAGTAGACAAGATTCCAGGAGTCTCCAGGCTGGTGATGTaGTTAAGATGGATCCCAGAG	+
Preference number: 4 (lower is better) Translates to: YKHRKIAVTLKVDKIPGVSRLVM*LRWIPE Trigger: CTCTGGGATCCATCTTAAGCACATCACCAGCCTGGA...GACTCCTGGAATCTTGTCTACTTTTAATGTAACTGCAATCTTCCGATGTTTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031320.8
CDS CCA 72 bp	TTCTTCGGGACCAGCGCTGGTGACAGCAACCACCGCTaGCAGAAACAACAGGCCCAGAAGCAGCAGCTCAGG	+
Preference number: 6 (lower is better) Translates to: FFGTSAGDSNHR*QKQQAQKQQLR Trigger: CCTGAGCTGCTGCTTCTGGGCCTGTTGTTTCTGCCAGCGGTGGTTGCTGTCACCAGCGCTGGTCCCGAAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031320.8 ENSMUST00000202625.2

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