Pregenerated sensors for PEX16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027222Ensembl transcript IDs: ENSMUST00000028650.9
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGCAGAGCACAGCACATaGCCCTCTGCCCCAGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: TRVRFIREEGPGGTGGLRAEHST*PSAPAP Trigger: GGGAGCTGGGGCAGAGGGCCATGTGCTGTGCTCTGC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| 3UTR-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCAGCACATGGCCCTCTaGCCCAGCTCCCTCATGGCT | + |
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Preference number: 2 (lower is better) Translates to: TRVRFIREEGPGGTGGLRQHMAL*PSSLMA Trigger: AGCCATGAGGGAGCTGGGGCAGAGGGCCATGTGCTG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCCCAGGCTGAGCAAGTaGAGCAGGGGCCGGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRPRLSK*SRGRAM Trigger: CATCGCCCGGCCCCTGCTGCACTTGCTCAGCCTGGG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCTGCCAGCAGGTAACTaGGGCCCCGCACAGCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRLPAGN*GPAQPS Trigger: AGACGGCTGTGCGGGGCCTCAGTTACCTGCTGGCAG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCCCATAAGCCCAGGCTaGGCAAGTGCAGCAGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRPISPG*ASAAGA Trigger: GGCCCCTGCTGCACTTGCTCAGCCTGGGCTTATGGG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGCCGTGGCGGCTGGATaGCGAGTCACATACTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRAVAAG*RVTYSW Trigger: CCAGGAGTATGTGACTCGTCATCCAGCCGCCACGGC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCTGGGCCGTGGCGGCTaGATGACGAGTCACATACTC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRLGRGG*MTSHIL Trigger: GAGTATGTGACTCGTCATCCAGCCGCCACGGCCCAG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGTCAGGATCCCGTCATTaGGCAGCACCAGCAGGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRSGSRH*AAPAGS Trigger: CGAACCTGCTGGTGCTGCTCAATGACGGGATCCTGA...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGTCCAAGGGCTGTGCCTaGGTTTCCCTGTCCAGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRSKGCA*VSLSSG Trigger: TCCACTGGACAGGGAAACTCAGGCACAGCCCTTGGA...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGAGGTGTTGGGGGTGTaGTCAGTTCCTCCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLREVLGV*SVPPAA Trigger: AGCAGCAGGAGGAACTGAGCACACCCCCAACACCTC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGAGGGATGGGCTGTTCTaGAGGGTTCGCACCACTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRRDGLF*RVRTTL Trigger: CAGAGTGGTGCGAACCCTCCAGAACAGCCCATCCCT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR TCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGTTCAGACAGCTCGTGTaGATCGGAGAAGCGACCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRFRQLV*IGEATC Trigger: GCAGGTCGCTTCTCCGATTCACACGAGCTGTCTGAA...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGACCATCCAAGGGCTGTaGCTGAGTTTCCCTGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRTIQGL*LSFPVQ Trigger: CTGGACAGGGAAACTCAGGCACAGCCCTTGGATGGT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGACGGCCTTGGCCAACTaGATGAGAGCAATGACGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRTALAN*MRAMTS Trigger: GCTCGTCATTGCTCTCATCCAGTTGGCCAAGGCCGT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCTCAGTTCCTCCTGCTaGTGTTTCTGCCGAATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRLSSSC*CFCRIS Trigger: GGAAATTCGGCAGAAACAGCAGCAGGAGGAACTGAG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGTGCTCAGTTCCTCCTaGTGCTGTTTCTGCCGAATT | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRVLSSS*CCFCRI Trigger: AATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCAC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGTGTCCAGTGGAACAATaGGGGGTGATGTCTGAATGC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRCPVEQ*GVMSEC Trigger: GCATTCAGACATCACCCCCCATTGTTCCACTGGACA...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGACAAAGACTCTGCAATaGTCTCCTGCAACCCCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRTKTLQ*SPATPE Trigger: CTCTGGGGTTGCAGGAGACCATTGCAGAGTCTTTGT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGTGGTCTGTAAGCAGCTaGAGCAGGAAGAGGATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRWSVSS*SRKRIL Trigger: CAAGATCCTCTTCCTGCTCCAGCTGCTTACAGACCA...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR GCA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGATGTACAAAGACTCTaGAATGGTCTCCTGCAACCC | + |
|
Preference number: 4 (lower is better) Translates to: TRVRFIREEGPGGTGGLRDVQRL*NGLLQP Trigger: GGGTTGCAGGAGACCATTGCAGAGTCTTTGTACATC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 90 bp | GTAACTGAGGCCCCGCACAGCCGTCTCCAACTGGGCCGTGGCGGCTaGATGACGAGTCACATACTCCTGGTAGCGGAGGCTCAGGAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: VTEAPHSRLQLGRGG*MTSHILLVAEAQEP Trigger: CGGCTCCTGAGCCTCCGCTACCAGGAGTATGTGACTCGTCATCCAGCCGCCACGGCCCAGTTGGAGACGGCTGTGCGGGGCCTCAGTTAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 90 bp | GTCATATCTACCACACCAGACAGTAGCCAGGGTGTCCACGATCGCTaGCCCCATAAGCCCAGGCTGAGCAAGTGCAGCAGGGGCCGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: VISTTPDSSQGVHDR*PHKPRLSKCSRGRA Trigger: CGCCCGGCCCCTGCTGCACTTGCTCAGCCTGGGCTTATGGGGTCAGCGATCGTGGACACCCTGGCTACTGTCTGGTGTGGTAGATATGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 90 bp | CTGTTTCTGCCGAATTTCCCGCTGCTGAGGGGCTCCCCAGTACCGTaGGTGCAGGGATGGGCTGTTCTGGAGGGTTCGCACCACTCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: LFLPNFPLLRGSPVP*VQGWAVLEGSHHSV Trigger: CACAGAGTGGTGCGAACCCTCCAGAACAGCCCATCCCTGCACTCACGGTACTGGGGAGCCCCTCAGCAGCGGGAAATTCGGCAGAAACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 90 bp | GTGCTCAGTTCCTCCTGCTGCTGTTTCTGCCGAATTTCCCGCTGCTaGGGGGCTCCCCAGTACCGTGAGTGCAGGGATGGGCTGTTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: VLSSSCCCFCRISRC*GAPQYRECRDGLFW Trigger: CCAGAACAGCCCATCCCTGCACTCACGGTACTGGGGAGCCCCTCAGCAGCGGGAAATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGACTTCGCCCCACACCTaGGCAGCCCCCATCTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: TRVRFIREEGPGGTGGLRTSPHT*AAPISM Trigger: CATGGAGATGGGGGCTGCCAAGGTGTGGGGCGAAGT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 90 bp | GCACCACTCTGTGTGACCGTTTCCCCACATATGATGGCTCCTGGCTaGCCGGATTGTGGTCACCATCCAAGGGCTGTGCCTGAGTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: APLCVTVSPHMMAPG*PDCGHHPRAVPEFP Trigger: GGGAAACTCAGGCACAGCCCTTGGATGGTGACCACAATCCGGGCAGCCAGGAGCCATCATATGTGGGGAAACGGTCACACAGAGTGGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGGCAACCCCAGAGGTGTaGGGGGTGTGCTCAGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: TRVRFIREEGPGGTGGLRATPEV*GVCSVP Trigger: AGGAACTGAGCACACCCCCAACACCTCTGGGGTTGC...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGCTCAGGATCCCGTCATaGAGCAGCACCAGCAGGTTC | + |
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Preference number: 5 (lower is better) Translates to: TRVRFIREEGPGGTGGLRLRIPS*SSTSRF Trigger: GAACCTGCTGGTGCTGCTCAATGACGGGATCCTGAG...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 90 bp | AAGACTCTGCAATGGTCTCCTGCAACCCCAGAGGTGTTGGGGGTGTaGTCAGTTCCTCCTGCTGCTGTTTCTGCCGAATTTCCCGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: KTLQWSPATPEVLGV*SVPPAAVSAEFPAA Trigger: AGCAGCGGGAAATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCACACCCCCAACACCTCTGGGGTTGCAGGAGACCATTGCAGAGTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 90 bp | GGTCATAGAACGGTGAGCGTAGCAGGTAGTATAGCAGCAGGATTGTaGGACGCCTCAGTTCTAGCCGCTCCCTCCGGGTCAAGTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: GHRTVSVAGSIAAGL*DASVLAAPSGSSSS Trigger: GGAAGAACTTGACCCGGAGGGAGCGGCTAGAACTGAGGCGTCGCACAATCCTGCTGCTATACTACCTGCTACGCTCACCGTTCTATGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 90 bp | GAAATAGATTTTCTGCCAGGAGGGCAAGTAGTCCATGAGCGGCCTTaGCACCAGACCCACGCCAGGGATGTGGTCTGTAAGCAGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: EIDFLPGGQVVHERP*HQTHARDVVCKQLE Trigger: CTCCAGCTGCTTACAGACCACATCCCTGGCGTGGGTCTGGTGGCAAGGCCGCTCATGGACTACTTGCCCTCCTGGCAGAAAATCTATTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGAGCAGGAAGAGGATCTaGGCTTCAGAGAAGCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: TRVRFIREEGPGGTGGLRSRKRI*ASEKRS Trigger: TGACCGCTTCTCTGAAGCCAAGATCCTCTTCCTGCT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCAGGTTTATTAGAGAAGAGGGGCCTGGGGGAACTGGAGGGCTGAGGAGTATAGCAGCAGGATaGTGCGACGCCTCAGTTCTA | + |
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Preference number: 5 (lower is better) Translates to: TRVRFIREEGPGGTGGLRSIAAG*CDASVL Trigger: TAGAACTGAGGCGTCGCACAATCCTGCTGCTATACT...CCTCAGCCCTCCAGTTCCCCCAGGCCCCTCTTCTCTAATAAACCTGACTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 90 bp | GATGTACAAAGACTCTGCAATGGTCTCCTGCAACCCCAGAGGTGTTaGGGGTGTGCTCAGTTCCTCCTGCTGCTGTTTCTGCCGAATTTC | + |
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Preference number: 5 (lower is better) Translates to: DVQRLCNGLLQPQRC*GCAQFLLLLFLPNF Trigger: GAAATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCACACCCCCAACACCTCTGGGGTTGCAGGAGACCATTGCAGAGTCTTTGTACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 72 bp | GCCCCGCACAGCCGTCTCCAACTGGGCCGTGGCGGCTaGATGACGAGTCACATACTCCTGGTAGCGGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: APHSRLQLGRGG*MTSHILLVAEA Trigger: AGCCTCCGCTACCAGGAGTATGTGACTCGTCATCCAGCCGCCACGGCCCAGTTGGAGACGGCTGTGCGGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | CGTGTGAATCGGAGAAGCGACCTGCCAGCAGGTAACTaGGGCCCCGCACAGCCGTCTCCAACTGGGCCGTGG | + |
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Preference number: 6 (lower is better) Translates to: RVNRRSDLPAGN*GPAQPSPTGPW Trigger: CCACGGCCCAGTTGGAGACGGCTGTGCGGGGCCTCAGTTACCTGCTGGCAGGTCGCTTCTCCGATTCACACG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | CCGAATTTCCCGCTGCTGAGGGGCTCCCCAGTACCGTaGGTGCAGGGATGGGCTGTTCTGGAGGGTTCGCAC | + |
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Preference number: 6 (lower is better) Translates to: PNFPLLRGSPVP*VQGWAVLEGSH Trigger: GTGCGAACCCTCCAGAACAGCCCATCCCTGCACTCACGGTACTGGGGAGCCCCTCAGCAGCGGGAAATTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | TCCTCCTGCTGCTGTTTCTGCCGAATTTCCCGCTGCTaGGGGGCTCCCCAGTACCGTGAGTGCAGGGATGGG | + |
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Preference number: 6 (lower is better) Translates to: SSCCCFCRISRC*GAPQYRECRDG Trigger: CCCATCCCTGCACTCACGGTACTGGGGAGCCCCTCAGCAGCGGGAAATTCGGCAGAAACAGCAGCAGGAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 72 bp | GCTCCCCAGTACCGTGAGTGCAGGGATGGGCTGTTCTaGAGGGTTCGCACCACTCTGTGTGACCGTTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: APQYRECRDGLF*RVRTTLCDRFP Trigger: GGGGAAACGGTCACACAGAGTGGTGCGAACCCTCCAGAACAGCCCATCCCTGCACTCACGGTACTGGGGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | ACCACACCAGACAGTAGCCAGGGTGTCCACGATCGCTaGCCCCATAAGCCCAGGCTGAGCAAGTGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: TTPDSSQGVHDR*PHKPRLSKCSR Trigger: CCTGCTGCACTTGCTCAGCCTGGGCTTATGGGGTCAGCGATCGTGGACACCCTGGCTACTGTCTGGTGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 72 bp | CAAGTGCAGCAGGGGCCGGGCGATGTACAAAGACTCTaGAATGGTCTCCTGCAACCCCAGAGGTGTTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: QVQQGPGDVQRL*NGLLQPQRCWG Trigger: CCCCCAACACCTCTGGGGTTGCAGGAGACCATTGCAGAGTCTTTGTACATCGCCCGGCCCCTGCTGCACTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 72 bp | ACGGTGAGCGTAGCAGGTAGTATAGCAGCAGGATTGTaGGACGCCTCAGTTCTAGCCGCTCCCTCCGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: TVSVAGSIAAGL*DASVLAAPSGS Trigger: TGACCCGGAGGGAGCGGCTAGAACTGAGGCGTCGCACAATCCTGCTGCTATACTACCTGCTACGCTCACCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 72 bp | TTTCTGCCAGGAGGGCAAGTAGTCCATGAGCGGCCTTaGCACCAGACCCACGCCAGGGATGTGGTCTGTAAG | + |
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Preference number: 6 (lower is better) Translates to: FLPGGQVVHERP*HQTHARDVVCK Trigger: CTTACAGACCACATCCCTGGCGTGGGTCTGGTGGCAAGGCCGCTCATGGACTACTTGCCCTCCTGGCAGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CAA 72 bp | AGAACGGTGAGCGTAGCAGGTAGTATAGCAGCAGGATaGTGCGACGCCTCAGTTCTAGCCGCTCCCTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: RTVSVAGSIAAG*CDASVLAAPSG Trigger: CCCGGAGGGAGCGGCTAGAACTGAGGCGTCGCACAATCCTGCTGCTATACTACCTGCTACGCTCACCGTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CAA 90 bp | ATGCCAGCCTTGAACCAGATCAACAGGAGCATGCGCAGGACGGCCTaGGCCAACTGGATGAGAGCAATGACGAGCCAACGGCCTACTTCG | + |
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Preference number: 6 (lower is better) Translates to: MPALNQINRSMRRTA*ANWMRAMTSQRPTS Trigger: CGAAGTAGGCCGTTGGCTCGTCATTGCTCTCATCCAGTTGGCCAAGGCCGTCCTGCGCATGCTCCTGTTGATCTGGTTCAAGGCTGGCAT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS GCA 72 bp | TGTGTGACCGTTTCCCCACATATGATGGCTCCTGGCTaGCCGGATTGTGGTCACCATCCAAGGGCTGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: CVTVSPHMMAPG*PDCGHHPRAVP Trigger: AGGCACAGCCCTTGGATGGTGACCACAATCCGGGCAGCCAGGAGCCATCATATGTGGGGAAACGGTCACACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 72 bp | ACCAGACCCACGCCAGGGATGTGGTCTGTAAGCAGCTaGAGCAGGAAGAGGATCTTGGCTTCAGAGAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: TRPTPGMWSVSS*SRKRILASEKR Trigger: CCGCTTCTCTGAAGCCAAGATCCTCTTCCTGCTCCAGCTGCTTACAGACCACATCCCTGGCGTGGGTCTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CAA 90 bp | AGCGGTCATAGAACGGTGAGCGTAGCAGGTAGTATAGCAGCAGGATaGTGCGACGCCTCAGTTCTAGCCGCTCCCTCCGGGTCAAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SGHRTVSVAGSIAAG*CDASVLAAPSGSSS Trigger: AGAACTTGACCCGGAGGGAGCGGCTAGAACTGAGGCGTCGCACAATCCTGCTGCTATACTACCTGCTACGCTCACCGTTCTATGACCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CCA 72 bp | ACTCTGTGTGACCGTTTCCCCACATATGATGGCTCCTaGCTGCCCGGATTGTGGTCACCATCCAAGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: TLCDRFPTYDGS*LPGLWSPSKGC Trigger: ACAGCCCTTGGATGGTGACCACAATCCGGGCAGCCAGGAGCCATCATATGTGGGGAAACGGTCACACAGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | GTTCGAGGCAGAGTACACCAGTTCAGACAGCTCGTGTaGATCGGAGAAGCGACCTGCCAGCAGGTAACTGAG | + |
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Preference number: 6 (lower is better) Translates to: VRGRVHQFRQLV*IGEATCQQVTE Trigger: CTCAGTTACCTGCTGGCAGGTCGCTTCTCCGATTCACACGAGCTGTCTGAACTGGTGTACTCTGCCTCGAAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS TCA 72 bp | AGAAATAGATTTTCTGCCAGGAGGGCAAGTAGTCCATaGGCGGCCTTGCCACCAGACCCACGCCAGGGATGT | + |
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Preference number: 6 (lower is better) Translates to: RNRFSARRASSP*AALPPDPRQGC Trigger: ACATCCCTGGCGTGGGTCTGGTGGCAAGGCCGCTCATGGACTACTTGCCCTCCTGGCAGAAAATCTATTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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| CDS CAA 90 bp | CGATGTACAAAGACTCTGCAATGGTCTCCTGCAACCCCAGAGGTGTaGGGGGTGTGCTCAGTTCCTCCTGCTGCTGTTTCTGCCGAATTT | + |
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Preference number: 6 (lower is better) Translates to: RCTKTLQWSPATPEV*GVCSVPPAAVSAEF Trigger: AAATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCACACCCCCAACACCTCTGGGGTTGCAGGAGACCATTGCAGAGTCTTTGTACATCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028650.9 |
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