Pregenerated sensors for PEX13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020283Ensembl transcript IDs: ENSMUST00000020523.4, ENSMUST00000130811.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCATATATTGTGACTCGCTCAGGATGAGATCTAGCTATATATTGTaGCTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGA | + |
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Preference number: 1 (lower is better) Translates to: SIYCDSLRMRSSYIL*LAQDEICDTVRRLR Trigger: TCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAGTCACAATATATAGCTAGATCTCATCCTGAGCGAGTCACAATATATGGA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 90 bp | TTGGAGGAAAAGAACAAAAATCCATATATTGTGACTCGCTCAGGATaGGATCTAGCTATATATTGTGACTCGCTCAGGATGAGATCTGTG | + |
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Preference number: 1 (lower is better) Translates to: LEEKNKNPYIVTRSG*DLAIYCDSLRMRSV Trigger: CACAGATCTCATCCTGAGCGAGTCACAATATATAGCTAGATCTCATCCTGAGCGAGTCACAATATATGGATTTTTGTTCTTTTCCTCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR GCA 90 bp | GTAAGGAGGTTAAGAAGCTGTCAGTCAGAACCATCTTCTTCACAGTaGTCCAGTGACCTCTTAAGAACACACTTTTATAAATACAATAAA | + |
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Preference number: 1 (lower is better) Translates to: VRRLRSCQSEPSSSQ*SSDLLRTHFYKYNK Trigger: TTTATTGTATTTATAAAAGTGTGTTCTTAAGAGGTCACTGGAGCACTGTGAAGAAGATGGTTCTGACTGACAGCTTCTTAACCTCCTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR GCA 90 bp | ACACTAAAAGAAACACTCTTCTTGTTATTAGCAGAGAGAGGAACATaGATGCATTCACATTGTACTGTGCTTTGTGTGGAGTATATGTTA | + |
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Preference number: 1 (lower is better) Translates to: TLKETLFLLLAERGT*MHSHCTVLCVEYML Trigger: TAACATATACTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTCCTCTCTCTGCTAATAACAAGAAGAGTGTTTCTTTTAGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 90 bp | TGTTCTACTGTTCATCAAATTTACTGTTCCAATAAGCCTAGGGACTaGGATAAGATGGAGCTGACAACTATCTCCATAATCTTAAAAACT | + |
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Preference number: 1 (lower is better) Translates to: CSTVHQIYCSNKPRD*DKMELTTISIILKT Trigger: AGTTTTTAAGATTATGGAGATAGTTGTCAGCTCCATCTTATCTCAGTCCCTAGGCTTATTGGAACAGTAAATTTGATGAACAGTAGAACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR TCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCTTTTCTTTCCAGAGCTaGGGACCGAACCCAGGGCCT | + |
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Preference number: 2 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPFSFQS*GPNPGP Trigger: AGGCCCTGGGTTCGGTCCTCAGCTCTGGAAAGAAAA...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATAGAGAGGAACATGCATaGATTCACATTGTACTGTGC | + |
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Preference number: 2 (lower is better) Translates to: YFSSSYNVESSVKCTRENREEHA*IHIVLC Trigger: GCACAGTACAATGTGAATGCATGCATGTTCCTCTCT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR TCA 90 bp | ATTGGAGCTGTGACCAATCTATTCATTTACTCTAAACCACAAAACTTTCTGCCACTGAAAAGTTACTACTaGATGTCAGAAAAATCAGCC | + |
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Preference number: 2 (lower is better) Translates to: IGAVTNLFIYSKPQNFLPLKSYY*MSEKSA Trigger: GGCTGATTTTTCTGACATTCAGTAGTAACTTTTCAG...TGGCAGAAAGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATAACCACAAAACTTTCTaGCACTCTAGTCCTACAACT | + |
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Preference number: 2 (lower is better) Translates to: YFSSSYNVESSVKCTRENNHKTF*HSSPTT Trigger: AGTTGTAGGACTAGAGTGGCAGAAAGTTTTGTGGTT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR CCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCGACTCCTGCCTTAGTTaGAGGAAAAGAACAAAAATC | + |
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Preference number: 2 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPDSCLS*RKRTKI Trigger: GATTTTTGTTCTTTTCCTCCAACTAAGGCAGGAGTC...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR GCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCATTCACATTGTACTGTaGTTTGTGTGGAGTATATGT | + |
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Preference number: 2 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPIHIVL*FVWSIC Trigger: ACATATACTCCACACAAAGCACAGTACAATGTGAAT...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR-3UTR CCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATGTTCTGAGCAGATATTaGGTTAGACATGGTTTAATA | + |
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Preference number: 2 (lower is better) Translates to: YFSSSYNVESSVKCTRENVLSRY*VRHGLI Trigger: TATTAAACCATGTCTAACCCAATATCTGCTCAGAAC...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | CCGAACCCAGGGCCTTGCAAGCAAGCGCTCTACCACTaGGCTAAATCCCCAACCCCGACAGACATATTTCAA | + |
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Preference number: 3 (lower is better) Translates to: PNPGPCKQALYH*AKSPTPTDIFQ Trigger: TTGAAATATGTCTGTCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCTTGCAAGGCCCTGGGTTCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | TGTGACTCGCTCAGGATGAGATCTAGCTATATATTGTaGCTCGCTCAGGATGAGATCTGTGACACTGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: CDSLRMRSSYIL*LAQDEICDTVR Trigger: CCTTACAGTGTCACAGATCTCATCCTGAGCGAGTCACAATATATAGCTAGATCTCATCCTGAGCGAGTCACA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR GCA 72 bp | CAGAGAGAGGAACATGCATGCATTCACATTGTACTGTaGTTTGTGTGGAGTATATGTTATGGTTCTGTTGCA | + |
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Preference number: 3 (lower is better) Translates to: QREEHACIHIVL*FVWSICYGSVA Trigger: TGCAACAGAACCATAACATATACTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTCCTCTCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR GCA 72 bp | GAAACACTCTTCTTGTTATTAGCAGAGAGAGGAACATaGATGCATTCACATTGTACTGTGCTTTGTGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: ETLFLLLAERGT*MHSHCTVLCVE Trigger: CTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTCCTCTCTCTGCTAATAACAAGAAGAGTGTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | GCCTCAGTGGTAGATTATTCAACCCCCTTTCTCAACTaGAAAGTTACTACTGAATGTCAGAAAAATCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: ASVVDYSTPFLN*KVTTECQKNQP Trigger: AGGCTGATTTTTCTGACATTCAGTAGTAACTTTTCAGTTGAGAAAGGGGGTTGAATAATCTACCACTGAGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | GTTCATCAAATTTACTGTTCCAATAAGCCTAGGGACTaGGATAAGATGGAGCTGACAACTATCTCCATAATC | + |
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Preference number: 3 (lower is better) Translates to: VHQIYCSNKPRD*DKMELTTISII Trigger: GATTATGGAGATAGTTGTCAGCTCCATCTTATCTCAGTCCCTAGGCTTATTGGAACAGTAAATTTGATGAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | AAGAACAAAAATCCATATATTGTGACTCGCTCAGGATaGGATCTAGCTATATATTGTGACTCGCTCAGGATG | + |
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Preference number: 3 (lower is better) Translates to: KNKNPYIVTRSG*DLAIYCDSLRM Trigger: CATCCTGAGCGAGTCACAATATATAGCTAGATCTCATCCTGAGCGAGTCACAATATATGGATTTTTGTTCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR CCA 72 bp | GAACATGCATGCATTCACATTGTACTGTGCTTTGTGTaGAGTATATGTTATGGTTCTGTTGCAGCTATAATC | + |
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Preference number: 3 (lower is better) Translates to: EHACIHIVLCFV*SICYGSVAAII Trigger: GATTATAGCTGCAACAGAACCATAACATATACTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR TCA 72 bp | CTACTTCAGGAAGTCCCTAAAATTATATTGGAGCTGTaGCCAATCTATTCATTTACTCTAAACCACAAAACT | + |
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Preference number: 3 (lower is better) Translates to: LLQEVPKIILEL*PIYSFTLNHKT Trigger: AGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAATATAATTTTAGGGACTTCCTGAAGTAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | GGAAAGAAATTTCTTCATCAGACACGGCAACAAAATCGTACTCTGCTCTTGCAAGAGACTCCCAGGGTTTaGGGGGCGGCGGCGGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GKKFLHQTRQQNRTLLLQETPRV*GAAAAG Trigger: CCCAGCCGCCGCCGCCCCCCAAACCCTGGGAGTCTC...TTGCAAGAGCAGAGTACGATTTTGTTGCCGTGTCTGATGAAGAAATTTCTTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130811.2 |
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| CDS-3UTR CCA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTCCCTGTCTGCTGGGATaGCCTGGGAAGAATAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: GETNVLVVHKTVKCRQITPCLLG*PGKNRR Trigger: CCGCCTATTCTTCCCAGGCCATCCCAGCAGACAGGG...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCGAGACTCCCAGGGTTTaGGGGGCGGCGGCGGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPETPRV*GAAAAG Trigger: CCCAGCCGCCGCCGCCCCCCAAACCCTGGGAGTCTC...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | AATTTTGACATAATTTGCAGGTATAAGTCCTGTTGTTTGACCGTCAAGACTAGCGGTGTTGTTGGTAAGTaGGGCCGGGGCCGGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: NFDIICRYKSCCLTVKTSGVVGK*GRGRSP Trigger: CGGGCTCCGGCCCCGGCCCCACTTACCAACAACACC...GCTAGTCTTGACGGTCAAACAACAGGACTTATACCTGCAAATTATGTCAAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130811.2 |
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| CDS-3UTR CCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCCAGCAGATTGGTAAGTaGGGCCGGGGCCGGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPQQIGK*GRGRSP Trigger: CGGGCTCCGGCCCCGGCCCCACTTACCAATCTGCTG...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCACATCCATCATCATGCTaGCAGAGGCAAATGCATGCA | + |
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Preference number: 4 (lower is better) Translates to: LAQDEICDTVRRLRSCQSHPSSC*QRQMHA Trigger: TGCATGCATTTGCCTCTGTCAGCATGATGATGGATG...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTCTTTCTTCAGCTTGCTaGACAAACCTACTGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: GETNVLVVHKTVKCRQITLSSAC*TNLLGG Trigger: TCCTCCCAGTAGGTTTGTTCAGCAAGCTGAAGAAAG...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCAATAAGTCCTGTTGTTTaGCCGTCAAGACTAGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LAQDEICDTVRRLRSCQSISPVV*PSRLAR Trigger: TCTGGCTAGTCTTGACGGTCAAACAACAGGACTTAT...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCACACCACTTGCCCAGTTaGTGTTGTCTGTTACTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LAQDEICDTVRRLRSCQSHHLPS*CCLLLH Trigger: ATGAAGTAACAGACAACACCAACTGGGCAAGTGGTG...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTATACTTTCAATGGACTaGAATGCACCTCTGCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: GETNVLVVHKTVKCRQITILSMD*NAPLLL Trigger: AAGCAGCAGAGGTGCATTTCAGTCCATTGAAAGTAT...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCATTTAGCCGGGAAAAGTaGTTTGCTACATCCAATACA | + |
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Preference number: 4 (lower is better) Translates to: LAQDEICDTVRRLRSCQSFSREK*FATSNT Trigger: TGTATTGGATGTAGCAAATCACTTTTCCCGGCTAAA...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTTTCAATGGACTGAAATaGACCTCTGCTGCTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GETNVLVVHKTVKCRQITFNGLK*TSAAFF Trigger: GAAGAAAGCAGCAGAGGTGCATTTCAGTCCATTGAA...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTGCACAATACTTTCAATaGACTGAAATGCACCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GETNVLVVHKTVKCRQITAQYFQ*TEMHLC Trigger: GCAGAGGTGCATTTCAGTCCATTGAAAGTATTGTGC...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCAATATCCAGAAGAAAATaGACTGTAAGCAGGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: LAQDEICDTVRRLRSCQSISRRK*TVSRSE Trigger: TTCAGACCTGCTTACAGTTCATTTTCTTCTGGATAT...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATTTGTTGCTCCCTGTCTaGTGGGATGGCCTGGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENLLLPV*WDGLGR Trigger: TCTTCCCAGGCCATCCCAGCAGACAGGGAGCAACAA...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | ATTGGAGCTGTGACCAATCTATTCATTTACTCTAAACCACAAAACTTTCTGCCAGCTCTTGCAACTACGTaGTCATCCTCACCACTTGCC | + |
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Preference number: 4 (lower is better) Translates to: IGAVTNLFIYSKPQNFLPALATT*SSSPLA Trigger: GGCAAGTGGTGAGGATGACCACGTAGTTGCAAGAGC...TGGCAGAAAGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCTTGCTCCCTGTCTGCTaGGATGGCCTGGGAAGAATA | + |
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Preference number: 4 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPLLPVC*DGLGRI Trigger: TATTCTTCCCAGGCCATCCCAGCAGACAGGGAGCAA...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCGCTGAGTTAGTTGCCTaGTCCTCAGCACTAAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPAELVA*SSALRQ Trigger: CTGCCTTAGTGCTGAGGACCAGGCAACTAACTCAGC...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR CAA 72 bp | GAGAGGAACATGCATGCATTCACATTGTACTGTGCTTaGTGTGGAGTATATGTTATGGTTCTGTTGCAGCTA | + |
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Preference number: 4 (lower is better) Translates to: ERNMHAFTLYCA*CGVYVMVLLQL Trigger: TAGCTGCAACAGAACCATAACATATACTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTCCTCTC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATTGGCCAAGATTTTGCTaGGTTAGTTGCCTGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENWPRFC*VSCLVL Trigger: GAGGACCAGGCAACTAACTCAGCAAAATCTTGGCCA...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATCATCCAATACAGCCCTaGAACTGTTATAGACGGCTG | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENHPIQP*NCYRRL Trigger: CAGCCGTCTATAACAGTTTCAGGGCTGTATTGGATG...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATATCGTACTCTGCTCTTaGAACTACGTGGTCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENIVLCS*NYVVIL Trigger: GAGGATGACCACGTAGTTGCAAGAGCAGAGTACGAT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR CAA 72 bp | AGAAAAGTTCAGGCATCTCAAGTCAGAAGTAAATATTaGTTAAAACCTTTGAGAGTCAGGGCCATGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: RKVQASQVRSKY*LKPLRVRAMPQ Trigger: CTGAGGCATGGCCCTGACTCTCAAAGGTTTTAACAAATATTTACTTCTGACTTGAGATGCCTGAACTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATACTGAAATGCACCTCTaGTGCTTTCTTCAGCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENTEMHL*CFLQLA Trigger: AGCAAGCTGAAGAAAGCAGCAGAGGTGCATTTCAGT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATCCGGGAAAAGTGATTTaGTACATCCAATACAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENPGKVI*YIQYSP Trigger: AGGGCTGTATTGGATGTAGCAAATCACTTTTCCCGG...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATGCTGAACAAACCTACTaGGAGGAAGATCATCTACAC | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENAEQTY*EEDHLH Trigger: GTGTAGATGATCTTCCTCCCAGTAGGTTTGTTCAGC...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| 3UTR CAA 72 bp | GTTATTAGCAGAGAGAGGAACATGCATGCATTCACATaGTACTGTGCTTTGTGTGGAGTATATGTTATGGTT | + |
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Preference number: 4 (lower is better) Translates to: VISRERNMHAFT*YCALCGVYVMV Trigger: AACCATAACATATACTCCACACAAAGCACAGTACAATGTGAATGCATGCATGTTCCTCTCTCTGCTAATAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATACTGTTATAGACGGCTaGAAAGGTAGCATCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENTVIDG*KGSIHH Trigger: ATGATGGATGCTACCTTTTCAGCCGTCTATAACAGT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CCA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATCACTCTTGTAAGTGTTaGTTGTCCAGGTCTTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: YFSSSYNVESSVKCTRENHSCKC*LSRSCQ Trigger: TTGACAAGACCTGGACAACCAACACTTACAAGAGTG...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR TCA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCAAGACTGTTGTTGCTTaGGCATTGTACTCGATTCTA | + |
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Preference number: 4 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPKTVVA*ALYSIL Trigger: TAGAATCGAGTACAATGCTCAAGCAACAACAGTCTT...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR GCA 90 bp | ATTGGAGCTGTGACCAATCTATTCATTTACTCTAAACCACAAAACTTTCTGCCAGTAAAAGACTGTTGTTaGTTGAGCATTGTACTCGAT | + |
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Preference number: 4 (lower is better) Translates to: IGAVTNLFIYSKPQNFLPVKDCC*LSIVLD Trigger: ATCGAGTACAATGCTCAAGCAACAACAGTCTTTTAC...TGGCAGAAAGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTGCCCAAATCAGCAGATaGGTAAGTGGGGCCGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: GETNVLVVHKTVKCRQITAQISR*VSGAGA Trigger: GGCCCCGGCCCCACTTACCAATCTGCTGATTTGGGC...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS TCA 90 bp | GCCAAGGATAACAGCAAAGAACAGGAATATTGGCCAAGATTTTGCTaGGTTAGTTGCCTGGTCCTCAGCACTAAGGCAGGCCACAGTTCC | + |
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Preference number: 5 (lower is better) Translates to: AKDNSKEQEYWPRFC*VSCLVLSTKAGHSS Trigger: GGAACTGTGGCCTGCCTTAGTGCTGAGGACCAGGCAACTAACTCAGCAAAATCTTGGCCAATATTCCTGTTCTTTGCTGTTATCCTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CCA 90 bp | GCAAAGAACAGGAATATTGGCCAAGATTTTGCTGAGTTAGTTGCCTaGTCCTCAGCACTAAGGCAGGCCACAGTTCCTTCACTTTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: AKNRNIGQDFAELVA*SSALRQATVPSLSA Trigger: GGCAGAAAGTGAAGGAACTGTGGCCTGCCTTAGTGCTGAGGACCAGGCAACTAACTCAGCAAAATCTTGGCCAATATTCCTGTTCTTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS TCA 90 bp | TTCCGTAGGCTCCATATCCAGAAGAAAATGAACTGTAAGCAGGTCTaGAAGTGTTTACATTGTTGCTCCCTGTCTGCTGGGATGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: FRRLHIQKKMNCKQV*KCLHCCSLSAGMAW Trigger: CCAGGCCATCCCAGCAGACAGGGAGCAACAATGTAAACACTTTCAGACCTGCTTACAGTTCATTTTCTTCTGGATATGGAGCCTACGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCATCACCACTTGCCCAGTaGGTGTTGTCTGTTACTTCA | + |
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Preference number: 5 (lower is better) Translates to: LAQDEICDTVRRLRSCQSSPLAQ*VLSVTS Trigger: TGAAGTAACAGACAACACCAACTGGGCAAGTGGTGA...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 90 bp | AGAAATTTCTTCATCAGACACGGCAACAAAATCGTACTCTGCTCTTaGAACTACGTGGTCATCCTCACCACTTGCCCAGTTGGTGTTGTC | + |
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Preference number: 5 (lower is better) Translates to: RNFFIRHGNKIVLCS*NYVVILTTCPVGVV Trigger: GACAACACCAACTGGGCAAGTGGTGAGGATGACCACGTAGTTGCAAGAGCAGAGTACGATTTTGTTGCCGTGTCTGATGAAGAAATTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 90 bp | ACGGAAAGAAATTTCTTCATCAGACACGGCAACAAAATCGTACTCTaGTCTTGCAACTACGTGGTCATCCTCACCACTTGCCCAGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: TERNFFIRHGNKIVL*SCNYVVILTTCPVG Trigger: ACCAACTGGGCAAGTGGTGAGGATGACCACGTAGTTGCAAGAGCAGAGTACGATTTTGTTGCCGTGTCTGATGAAGAAATTTCTTTCCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS TCA 90 bp | GTGATTTGCTACATCCAATACAGCCCTGAAACTGTTATAGACGGCTaGAAAGGTAGCATCCATCATCATGCTGACAGAGGCAAATGCATG | + |
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Preference number: 5 (lower is better) Translates to: VICYIQYSPETVIDG*KGSIHHHADRGKCM Trigger: CATGCATTTGCCTCTGTCAGCATGATGATGGATGCTACCTTTTCAGCCGTCTATAACAGTTTCAGGGCTGTATTGGATGTAGCAAATCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 90 bp | AGGCAAATGCATGCACAATACTTTCAATGGACTGAAATGCACCTCTaGTGCTTTCTTCAGCTTGCTGAACAAACCTACTGGGAGGAAGAT | + |
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Preference number: 5 (lower is better) Translates to: RQMHAQYFQWTEMHL*CFLQLAEQTYWEED Trigger: ATCTTCCTCCCAGTAGGTTTGTTCAGCAAGCTGAAGAAAGCAGCAGAGGTGCATTTCAGTCCATTGAAAGTATTGTGCATGCATTTGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | ATTGGAGCTGTGACCAATCTATTCATTTACTCTAAACCACAAAACTTTCTGCCAGGTCATCCTCACCACTaGCCCAGTTGGTGTTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: IGAVTNLFIYSKPQNFLPGHPHH*PSWCCL Trigger: CAGACAACACCAACTGGGCAAGTGGTGAGGATGACC...TGGCAGAAAGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTGGTAAAAGACTGTTGTaGCTTGAGCATTGTACTCGA | + |
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Preference number: 5 (lower is better) Translates to: GETNVLVVHKTVKCRQITGKRLL*LEHCTR Trigger: TCGAGTACAATGCTCAAGCAACAACAGTCTTTTACC...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GGTGAAACAAATGTCCTCGTGGTCCACAAGACAGTCAAGTGTAGACAGATCACTCAAAGAACAGGAATATaGGCCAAGATTTTGCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: GETNVLVVHKTVKCRQITQRTGI*AKILLS Trigger: ACTCAGCAAAATCTTGGCCAATATTCCTGTTCTTTG...AGTGATCTGTCTACACTTGACTGTCTTGTGGACCACGAGGACATTTGTTTCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | CTCGCTCAGGATGAGATCTGTGACACTGTAAGGAGGTTAAGAAGCTGTCAGTCATTGGGTTGTTGTTCTTaGAGGGCTAAATTTAGCATA | + |
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Preference number: 5 (lower is better) Translates to: LAQDEICDTVRRLRSCQSLGCCS*RAKFSI Trigger: TATGCTAAATTTAGCCCTCAAAGAACAACAACCCAA...TGACTGACAGCTTCTTAACCTCCTTACAGTGTCACAGATCTCATCCTGAGCGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | ATTGGAGCTGTGACCAATCTATTCATTTACTCTAAACCACAAAACTTTCTGCCAGCTGCTTTCTTCAGCTaGCTGAACAAACCTACTGGG | + |
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Preference number: 5 (lower is better) Translates to: IGAVTNLFIYSKPQNFLPAAFFS*LNKPTG Trigger: CCCAGTAGGTTTGTTCAGCAAGCTGAAGAAAGCAGC...TGGCAGAAAGTTTTGTGGTTTAGAGTAAATGAATAGATTGGTCACAGCTCCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCGCCGGGAAAAGTGATTaGCTACATCCAATACAGCCC | + |
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Preference number: 5 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPAGKSD*LHPIQP Trigger: GGGCTGTATTGGATGTAGCAAATCACTTTTCCCGGC...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCAGCCAACCACGCACTTaGGGTTGTTGTTCTTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPSQPRT*GCCSLR Trigger: CCTCAAAGAACAACAACCCAAAGTGCGTGGTTGGCT...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | TACTTTTCCTCCAGCTATAACGTAGAATCTTCTGTGAAATGTACACGTGAAAATAAAGTGTTTACATTGTaGCTCCCTGTCTGCTGGGAT | + |
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Preference number: 5 (lower is better) Translates to: YFSSSYNVESSVKCTRENKVFTL*LPVCWD Trigger: ATCCCAGCAGACAGGGAGCAACAATGTAAACACTTT...ATTTTCACGTGTACATTTCACAGAAGATTCTACGTTATAGCTGGAGGAAAAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 90 bp | GTAGTGACTCCTTTAATTAATGTTGGGTTGGTAAAAGACTGTTGTTaGTTGAGCATTGTACTCGATTCTATTGTTTTTCTGCCTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: VVTPLINVGLVKDCC*LSIVLDSIVFLPLL Trigger: AAGAAGAGGCAGAAAAACAATAGAATCGAGTACAATGCTCAAGCAACAACAGTCTTTTACCAACCCAACATTAATTAAAGGAGTCACTAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS-3UTR CAA 90 bp | GAACATGACATCTATTTGTTAGAAGAGTTCTTTGGTTCTTCTTATAAACACCCCAAAGACTGTTGTTGCTaGAGCATTGTACTCGATTCT | + |
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Preference number: 5 (lower is better) Translates to: EHDIYLLEEFFGSSYKHPKDCCC*SIVLDS Trigger: AGAATCGAGTACAATGCTCAAGCAACAACAGTCTTT...GGGGTGTTTATAAGAAGAACCAAAGAACTCTTCTAACAAATAGATGTCATGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 72 bp | GCAGGTCTGAAAGTGTTTACATTGTTGCTCCCTGTCTaGTGGGATGGCCTGGGAAGAATAGGCGGGGGCACT | + |
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Preference number: 6 (lower is better) Translates to: AGLKVFTLLLPV*WDGLGRIGGGT Trigger: AGTGCCCCCGCCTATTCTTCCCAGGCCATCCCAGCAGACAGGGAGCAACAATGTAAACACTTTCAGACCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CCA 72 bp | GGTCTGAAAGTGTTTACATTGTTGCTCCCTGTCTGCTaGGATGGCCTGGGAAGAATAGGCGGGGGCACTCTT | + |
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Preference number: 6 (lower is better) Translates to: GLKVFTLLLPVC*DGLGRIGGGTL Trigger: AAGAGTGCCCCCGCCTATTCTTCCCAGGCCATCCCAGCAGACAGGGAGCAACAATGTAAACACTTTCAGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CCA 72 bp | AGGAATATTGGCCAAGATTTTGCTGAGTTAGTTGCCTaGTCCTCAGCACTAAGGCAGGCCACAGTTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: RNIGQDFAELVA*SSALRQATVPS Trigger: TGAAGGAACTGTGGCCTGCCTTAGTGCTGAGGACCAGGCAACTAACTCAGCAAAATCTTGGCCAATATTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS TCA 72 bp | AACAGCAAAGAACAGGAATATTGGCCAAGATTTTGCTaGGTTAGTTGCCTGGTCCTCAGCACTAAGGCAGGC | + |
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Preference number: 6 (lower is better) Translates to: NSKEQEYWPRFC*VSCLVLSTKAG Trigger: GCCTGCCTTAGTGCTGAGGACCAGGCAACTAACTCAGCAAAATCTTGGCCAATATTCCTGTTCTTTGCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 72 bp | ACTCTGCTCTTGCAACTACGTGGTCATCCTCACCACTaGCCCAGTTGGTGTTGTCTGTTACTTCATCATTGT | + |
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Preference number: 6 (lower is better) Translates to: TLLLQLRGHPHH*PSWCCLLLHHC Trigger: ACAATGATGAAGTAACAGACAACACCAACTGGGCAAGTGGTGAGGATGACCACGTAGTTGCAAGAGCAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 72 bp | AATTTCTTCATCAGACACGGCAACAAAATCGTACTCTaGTCTTGCAACTACGTGGTCATCCTCACCACTTGC | + |
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Preference number: 6 (lower is better) Translates to: NFFIRHGNKIVL*SCNYVVILTTC Trigger: GCAAGTGGTGAGGATGACCACGTAGTTGCAAGAGCAGAGTACGATTTTGTTGCCGTGTCTGATGAAGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 72 bp | CTTGCAACTACGTGGTCATCCTCACCACTTGCCCAGTaGGTGTTGTCTGTTACTTCATCATTGTGTGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: LATTWSSSPLAQ*VLSVTSSLCVD Trigger: ATCTACACACAATGATGAAGTAACAGACAACACCAACTGGGCAAGTGGTGAGGATGACCACGTAGTTGCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS TCA 72 bp | CTCCATATCCAGAAGAAAATGAACTGTAAGCAGGTCTaGAAGTGTTTACATTGTTGCTCCCTGTCTGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LHIQKKMNCKQV*KCLHCCSLSAG Trigger: CCCAGCAGACAGGGAGCAACAATGTAAACACTTTCAGACCTGCTTACAGTTCATTTTCTTCTGGATATGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 72 bp | CATGCACAATACTTTCAATGGACTGAAATGCACCTCTaGTGCTTTCTTCAGCTTGCTGAACAAACCTACTGG | + |
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Preference number: 6 (lower is better) Translates to: HAQYFQWTEMHL*CFLQLAEQTYW Trigger: CCAGTAGGTTTGTTCAGCAAGCTGAAGAAAGCAGCAGAGGTGCATTTCAGTCCATTGAAAGTATTGTGCATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 72 bp | ACTACGTGGTCATCCTCACCACTTGCCCAGTTGGTGTaGTCTGTTACTTCATCATTGTGTGTAGATAGAAGT | + |
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Preference number: 6 (lower is better) Translates to: TTWSSSPLAQLV*SVTSSLCVDRS Trigger: ACTTCTATCTACACACAATGATGAAGTAACAGACAACACCAACTGGGCAAGTGGTGAGGATGACCACGTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 72 bp | GGATTGGTGGTAGTGACTCCTTTAATTAATGTTGGGTaGGTAAAAGACTGTTGTTGCTTGAGCATTGTACTC | + |
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Preference number: 6 (lower is better) Translates to: GLVVVTPLINVG*VKDCCCLSIVL Trigger: GAGTACAATGCTCAAGCAACAACAGTCTTTTACCAACCCAACATTAATTAAAGGAGTCACTACCACCAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 90 bp | TCAACAAAAACAGATTCAAAGGCAGCTTCCTGTTCATCCAAAGGATaGGTGGTAGTGACTCCTTTAATTAATGTTGGGTTGGTAAAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: STKTDSKAASCSSKG*VVVTPLINVGLVKD Trigger: GTCTTTTACCAACCCAACATTAATTAAAGGAGTCACTACCACCAATCCTTTGGATGAACAGGAAGCTGCCTTTGAATCTGTTTTTGTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS CAA 90 bp | TCATCCAAAGGATTGGTGGTAGTGACTCCTTTAATTAATGTTGGGTaGGTAAAAGACTGTTGTTGCTTGAGCATTGTACTCGATTCTATT | + |
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Preference number: 6 (lower is better) Translates to: SSKGLVVVTPLINVG*VKDCCCLSIVLDSI Trigger: AATAGAATCGAGTACAATGCTCAAGCAACAACAGTCTTTTACCAACCCAACATTAATTAAAGGAGTCACTACCACCAATCCTTTGGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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| CDS GCA 72 bp | CCTTTAATTAATGTTGGGTTGGTAAAAGACTGTTGTTaGTTGAGCATTGTACTCGATTCTATTGTTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PLINVGLVKDCC*LSIVLDSIVFL Trigger: CAGAAAAACAATAGAATCGAGTACAATGCTCAAGCAACAACAGTCTTTTACCAACCCAACATTAATTAAAGG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020523.4 |
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