Pregenerated sensors for PET117 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000098387Ensembl transcript IDs: ENSMUST00000183618.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGACTGAGGAGCCCACTCAGGTGGATGCTACTATCCATCGCCCCCTaGTCACACGCACTCCTAAGCTGCCGGGATCCCCCAGACCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: RLRSPLRWMLLSIAP*SHALLSCRDPPDLQ Trigger: CTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGTGCGTGTGAGCAGGGGGCGATGGATAGTAGCATCCACCTGAGTGGGCTCCTCAGTCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR CCA 90 bp | GTTCTCGTGGCGTCATCGTCATGCCGACTGAGGAGCCCACTCAGGTaGATGCTACTATCCATCGCCCCCTGCTCACACGCACTCCTAAGC | + |
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Preference number: 1 (lower is better) Translates to: VLVASSSCRLRSPLR*MLLSIAPCSHALLS Trigger: GCTTAGGAGTGCGTGTGAGCAGGGGGCGATGGATAGTAGCATCCACCTGAGTGGGCTCCTCAGTCGGCATGACGATGACGCCACGAGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR GCA 90 bp | TGGATGCTACTATCCATCGCCCCCTGCTCACACGCACTCCTAAGCTaGCGGGATCCCCCAGACCTTCAGAAGGACATCTGCCCACAAGCA | + |
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Preference number: 1 (lower is better) Translates to: WMLLSIAPCSHALLS*RDPPDLQKDICPQA Trigger: TGCTTGTGGGCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGTGCGTGTGAGCAGGGGGCGATGGATAGTAGCATCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR GCA 90 bp | GCACTCCTAAGCTGCCGGGATCCCCCAGACCTTCAGAAGGACATCTaGCCACAAGCACTCTATCCAGACAGAACAGACTCTTTAAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: ALLSCRDPPDLQKDI*PQALYPDRTDSLKK Trigger: CTTCTTTAAAGAGTCTGTTCTGTCTGGATAGAGTGCTTGTGGGCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR GCA 72 bp | AGCCCACTCAGGTGGATGCTACTATCCATCGCCCCCTaGTCACACGCACTCCTAAGCTGCCGGGATCCCCCA | + |
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Preference number: 3 (lower is better) Translates to: SPLRWMLLSIAP*SHALLSCRDPP Trigger: TGGGGGATCCCGGCAGCTTAGGAGTGCGTGTGAGCAGGGGGCGATGGATAGTAGCATCCACCTGAGTGGGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR GCA 72 bp | CTATCCATCGCCCCCTGCTCACACGCACTCCTAAGCTaGCGGGATCCCCCAGACCTTCAGAAGGACATCTGC | + |
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Preference number: 3 (lower is better) Translates to: LSIAPCSHALLS*RDPPDLQKDIC Trigger: GCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGTGCGTGTGAGCAGGGGGCGATGGATAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR CCA 72 bp | GCGTCATCGTCATGCCGACTGAGGAGCCCACTCAGGTaGATGCTACTATCCATCGCCCCCTGCTCACACGCA | + |
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Preference number: 3 (lower is better) Translates to: ASSSCRLRSPLR*MLLSIAPCSHA Trigger: TGCGTGTGAGCAGGGGGCGATGGATAGTAGCATCCACCTGAGTGGGCTCCTCAGTCGGCATGACGATGACGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR TCA 72 bp | AGGTGGACGTTCTCGTGGCGTCATCGTCATGCCGACTaGGGAGCCCACTCAGGTGGATGCTACTATCCATCG | + |
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Preference number: 3 (lower is better) Translates to: RWTFSWRHRHAD*GAHSGGCYYPS Trigger: CGATGGATAGTAGCATCCACCTGAGTGGGCTCCTCAGTCGGCATGACGATGACGCCACGAGAACGTCCACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| 3UTR GCA 72 bp | AGCTGCCGGGATCCCCCAGACCTTCAGAAGGACATCTaGCCACAAGCACTCTATCCAGACAGAACAGACTCT | + |
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Preference number: 3 (lower is better) Translates to: SCRDPPDLQKDI*PQALYPDRTDS Trigger: AGAGTCTGTTCTGTCTGGATAGAGTGCTTGTGGGCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| CDS-3UTR TCA 90 bp | GCACTCCTAAGCTGCCGGGATCCCCCAGACCTTCAGAAGGACATCTGCCCACAAGCCTCTCAATGTCTCTaGTCACTCCGTCACGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: ALLSCRDPPDLQKDICPQASQCL*SLRHEA Trigger: GGCTTCGTGACGGAGTGATCAGAGACATTGAGAGGC...TTGTGGGCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| CDS-3UTR GCA 90 bp | ACAGGGCCCACTGTCCTTCATTTAACAAAGTTTAAATGGAGCGTGATTTGGGGGTGCCGCTGCTTCAGATaGACGCCGGCCACCGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: TGPTVLHLTKFKWSVIWGCRCFR*TPATVA Trigger: GGCCACGGTGGCCGGCGTGCATCTGAAGCAGCGGCA...CCCCCAAATCACGCTCCATTTAAACTTTGTTAAATGAAGGACAGTGGGCCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| CDS-3UTR GCA 90 bp | ACTCCTAAGCTGCCGGGATCCCCCAGACCTTCAGAAGGACATCTGCCCACAAGCCATCTTCTCTCTTTCTaGTTCAAGCTGCTTAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: TPKLPGSPRPSEGHLPTSHLLSF*FKLLSQ Trigger: TTGACTAAGCAGCTTGAAGCAGAAAGAGAGAAGATG...GCTTGTGGGCAGATGTCCTTCTGAAGGTCTGGGGGATCCCGGCAGCTTAGGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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| CDS GCA 72 bp | CTCTCAATGTCTCTGATCACTCCGTCACGAAGCCTCTaGCGGTCCTGCCGCTGCTTCAGATGCACGCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: LSMSLITPSRSL*RSCRCFRCTPA Trigger: GGCCGGCGTGCATCTGAAGCAGCGGCAGGACCGGCAGAGGCTTCGTGACGGAGTGATCAGAGACATTGAGAG 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183618.3 |
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