Pregenerated sensors for PET100 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087687Ensembl transcript IDs: ENSMUST00000156380.4, ENSMUST00000207428.2, ENSMUST00000208950.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGCACACGTGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTaGCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGATCAGGC | + |
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Preference number: 1 (lower is better) Translates to: GHTCAHAGGGQKSIS*PGSFQCPGTPGRSG Trigger: GCCTGATCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTGACTTCTGGCCTCCACCTGCGTGTGCACACGTGTGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR GCA 90 bp | AGGATGGAATGCAGAAACGACCTGGGACCCTCAGCCCTCAACCCCTaGTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACA | + |
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Preference number: 1 (lower is better) Translates to: RMECRNDLGPSALNP*SPLRILLHSASAGT Trigger: TGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGCTGAGGGTCCCAGGTCGTTTCTGCATTCCATCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR TCA 90 bp | TTAGTATTTAGCTTTGAACTCAAAATAATCCTCCTGCCTGTTTCTTaGGTACTGGGATTACAGGTATACACTAACAGGCCAATGTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LVFSFELKIILLPVS*VLGLQVYTNRPMSD Trigger: GTCAGACATTGGCCTGTTAGTGTATACCTGTAATCCCAGTACTCAAGAAACAGGCAGGAGGATTATTTTGAGTTCAAAGCTAAATACTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CCA 90 bp | CCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCATGTTATTTTCTGTGGTaGGGAAGGGAGCTGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: PPAPDTSSLRVLAILGLPCYFLW*GRELGL Trigger: AAGTCCCAGCTCCCTTCCCCACCACAGAAAATAACA...TGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGCTGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000156380.4 ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTCTCGGCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCATGTTATTTTCTGTGGTaGGGAAGGGAGCTGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: EVSAPLRILLHSASAGTACYFLW*GRELGL Trigger: AAGTCCCAGCTCCCTTCCCCACCACAGAAAATAACA...TGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGCCGAGACCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| 3UTR-3UTR CCA 90 bp | AACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCATCCTGGGCCTCCCACTaGCCCCTGAAAACAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: NPCSPLRILLHSASAGTASWASH*PLKTIK Trigger: TTTTATTGTTTTCAGGGGCCAGTGGGAGGCCCAGGA...TGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CCA 90 bp | TGCCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGATCAGGCTCTCTAGCTTGTTATTTTCTGTGGTaGGGAAGGGAGCTGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: CPGSFQCPGTPGRSGSLACYFLW*GRELGL Trigger: AAGTCCCAGCTCCCTTCCCCACCACAGAAAATAACA...AGCTAGAGAGCCTGATCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CCA 90 bp | GAAGAAAAGGGAGAGGGAGGCTCAGACCTTCTAGACAAGGTAAGAGGGCTCTGGTCCTGGGCCTCCCACTaGCCCCTGAAAACAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: EEKGEGGSDLLDKVRGLWSWASH*PLKTIK Trigger: TTTTATTGTTTTCAGGGGCCAGTGGGAGGCCCAGGA...CCAGAGCCCTCTTACCTTGTCTAGAAGGTCTGAGCCTCCCTCTCCCTTTTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000208950.2 |
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| 3UTR-3UTR GCA 90 bp | TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGTATACACTAACAGGCCAATGTTCAGCCCTCAACCCCTaGTCACCCCTCAGGATCCTG | + |
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Preference number: 2 (lower is better) Translates to: SCLFLEYWDYRYTLTGQCSALNP*SPLRIL Trigger: CAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGCTGA...ACATTGGCCTGTTAGTGTATACCTGTAATCCCAGTACTCAAGAAACAGGCAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR GCA 90 bp | TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGTATACACTAACAGGCCAATGTGAGGCACTTCTGACTTaGACTTTCCTTGGTCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: SCLFLEYWDYRYTLTGQCEALLT*TFLGPL Trigger: GAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTC...ACATTGGCCTGTTAGTGTATACCTGTAATCCCAGTACTCAAGAAACAGGCAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR TCA 90 bp | TCCTGCCTGTTTCTTGAGTACTGGGATTACAGGTATACACTAACAGGCCAATGTGTTTGGAGGCACTTCTaGCTTGCACTTTCCTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: SCLFLEYWDYRYTLTGQCVWRHF*LALSLV Trigger: GACCAAGGAAAGTGCAAGTCAGAAGTGCCTCCAAAC...ACATTGGCCTGTTAGTGTATACCTGTAATCCCAGTACTCAAGAAACAGGCAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR TCA 90 bp | AGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGTAGATAAGGATTTCAATGACTaGGCTATCTTCTCAACTCAA | + |
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Preference number: 2 (lower is better) Translates to: RSQSPALGAFSALELQVDKDFND*AIFSTQ Trigger: TTGAGTTGAGAAGATAGCTCAGTCATTGAAATCCTT...ATCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTGACTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CCA 90 bp | CCCACACCTGGCTTAAACTCAGGTCTTCAAATGAGCATAGCAAGGATTTCAATGGTGTGTTATTTTCTGTaGTGGGGAAGGGAGCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: PTPGLNSGLQMSIARISMVCYFL*WGRELG Trigger: TCCCAGCTCCCTTCCCCACCACAGAAAATAACACAC...CATTGAAATCCTTGCTATGCTCATTTGAAGACCTGAGTTTAAGCCAGGTGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CCA 90 bp | TCCACCCTCATGTTGGTTGATCTTCAACATTGTACTGACTTCTTCCCACTTGACGTGTGTTATTTTCTGTaGTGGGGAAGGGAGCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: STLMLVDLQHCTDFFPLDVCYFL*WGRELG Trigger: TCCCAGCTCCCTTCCCCACCACAGAAAATAACACAC...GTCAAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAACCAACATGAGGGTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCTCATGTTGGTTGATCTTCAACATTGTACTGACTTCTTCCCACTTGACATTTCCTGGGCCTCCCACTaGCCCCTGAAAACAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: TLMLVDLQHCTDFFPLDISWASH*PLKTIK Trigger: TTTTATTGTTTTCAGGGGCCAGTGGGAGGCCCAGGA...AATGTCAAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAACCAACATGAGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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| 3UTR GCA 72 bp | ATCCGCTTCTTGAGGTCTCGGCACCCCTCAGGATCCTaGTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCA | + |
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Preference number: 3 (lower is better) Translates to: IRFLRSRHPSGS*CTQLPQEQQPP Trigger: TGGGGGCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGCCGAGACCTCAAGAAGCGGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| 3UTR GCA 72 bp | TGTGCACACGCAGGTGGAGGCCAGAAGTCAATCTCCTaGCCTGGGAGCTTTCAGTGCCCTGGAACTCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: CAHAGGGQKSIS*PGSFQCPGTPG Trigger: ACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTGACTTCTGGCCTCCACCTGCGTGTGCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR CCA 72 bp | TGTTTAGAGCTCCGGGCACACGTGTGCACACGCAGGTaGAGGCCAGAAGTCAATCTCCTGCCCTGGGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: CLELRAHVCTRR*RPEVNLLPWEL Trigger: AAGCTCCCAGGGCAGGAGATTGACTTCTGGCCTCCACCTGCGTGTGCACACGTGTGCCCGGAGCTCTAAACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR GCA 72 bp | GGCCAGAAGTCAATCTCCTGCCCTGGGAGCTTTCAGTaGCCTGGAACTCCAGGTAGATCAGGCTCTCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: GQKSISCPGSFQ*PGTPGRSGSLA Trigger: AGCTAGAGAGCCTGATCTACCTGGAGTTCCAGGGCACTGAAAGCTCCCAGGGCAGGAGATTGACTTCTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CAA 90 bp | TCTCGGCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCACTAGCAACAAAGAGTaGAGTGTGTGTTATTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: SRHPSGSCCTQLPQEQQPTSNKE*SVCYFL Trigger: CAGAAAATAACACACACTCAACTCTTTGTTGCTAGT...GGGCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGCCGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| 3UTR TCA 72 bp | GATAGAACCCAGGGCTTTGATGCAGTCTCTATCAACTaGGCTCCAGCCCCAGCCCTATGTCTGTGTACATTA | + |
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Preference number: 3 (lower is better) Translates to: DRTQGFDAVSIN*APAPALCLCTL Trigger: TAATGTACACAGACATAGGGCTGGGGCTGGAGCTCAGTTGATAGAGACTGCATCAAAGCCCTGGGTTCTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR GCA 72 bp | TTTCATGTAGCTCTGGCTGGCATGTTCTCCTACATGTaGATCCTGGGTTCTGGGATAACAGGTGTGAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: FHVALAGMFSYM*ILGSGITGVSH Trigger: GTGACTCACACCTGTTATCCCAGAACCCAGGATGCACATGTAGGAGAACATGCCAGCCAGAGCTACATGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR-3UTR CAA 90 bp | CATTGTTTGGAGGCACTTCTGACTTGCACTTTCCTTGGTCCCCTCCCTCCGTCTACTAGCAACAAAGAGTaGAGTGTGTGTTATTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: HCLEALLTCTFLGPLPPSTSNKE*SVCYFL Trigger: CAGAAAATAACACACACTCAACTCTTTGTTGCTAGT...AGACGGAGGGAGGGGACCAAGGAAAGTGCAAGTCAGAAGTGCCTCCAAACAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| 3UTR TCA 72 bp | AGCTTTGAACTCAAAATAATCCTCCTGCCTGTTTCTTaGGTACTGGGATTACAGGTATACACTAACAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: SFELKIILLPVS*VLGLQVYTNRP Trigger: TGGCCTGTTAGTGTATACCTGTAATCCCAGTACTCAAGAAACAGGCAGGAGGATTATTTTGAGTTCAAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| CDS-3UTR CCA 90 bp | CCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCAACCCTCCTTCTCTCTTaGCCACAGCTCCCTCTTACG | + |
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Preference number: 4 (lower is better) Translates to: PPAPDTSSLRVLAILGLPTLLLS*PQLPLT Trigger: CGTAAGAGGGAGCTGTGGCCAAGAGAGAAGGAGGGT...TGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGCTGGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000156380.4 ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| CDS-3UTR TCA 90 bp | GCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGACTCTGCTGGGCAGCTTaGAGAAGTCTCTCTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: ALNPCSPLRILLHSASAGLCWAA*RSLSSF Trigger: GAAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAG...TCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| CDS-3UTR TCA 90 bp | GCCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCCTCTGCTGGGCAGCTTaGAGAAGTCTCTCTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: APSPRHKLLESSSHPGPPLCWAA*RSLSSF Trigger: GAAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAG...GGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGCTGGGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000156380.4 ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| CDS-3UTR GCA 90 bp | GCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGATGCTTCCGGATCTTCTaGTTAAATTCTTCTAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: ALNPCSPLRILLHSASAGCFRIF*LNSSSS Trigger: GGAGCTAGAAGAATTTAAGCAGAAGATCCGGAAGCA...TCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGAGCAGGGGTTGAGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156380.4 |
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| CDS-3UTR GCA 90 bp | GCCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCTGCTTCCGGATCTTCTaGTTAAATTCTTCTAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: APSPRHKLLESSSHPGPPCFRIF*LNSSSS Trigger: GGAGCTAGAAGAATTTAAGCAGAAGATCCGGAAGCA...GGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGCTGGGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000156380.4 ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| CDS-3UTR CCA 90 bp | GAAGAAAAGGGAGAGGGAGGCTCAGACCTTCTAGACAAGGTAAGAGGGCTCTGGACCCTCCTTCTCTCTTaGCCACAGCTCCCTCTTACG | + |
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Preference number: 4 (lower is better) Translates to: EEKGEGGSDLLDKVRGLWTLLLS*PQLPLT Trigger: CGTAAGAGGGAGCTGTGGCCAAGAGAGAAGGAGGGT...CCAGAGCCCTCTTACCTTGTCTAGAAGGTCTGAGCCTCCCTCTCCCTTTTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208950.2 |
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| CDS-3UTR CCA 90 bp | TTGATCTTCAACATTGTACTGACTTCTTCCCACTTGACATTCCTCAAGGTCCTTACCCTCCTTCTCTCTTaGCCACAGCTCCCTCTTACG | + |
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Preference number: 4 (lower is better) Translates to: LIFNIVLTSSHLTFLKVLTLLLS*PQLPLT Trigger: CGTAAGAGGGAGCTGTGGCCAAGAGAGAAGGAGGGT...AAGGACCTTGAGGAATGTCAAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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| CDS-3UTR TCA 90 bp | TCATGTTGGTTGATCTTCAACATTGTACTGACTTCTTCCCACTTGACATTCCTCCTCTGCTGGGCAGCTTaGAGAAGTCTCTCTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SCWLIFNIVLTSSHLTFLLCWAA*RSLSSF Trigger: GAAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAG...GAGGAATGTCAAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAACCAACATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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| 3UTR CAA 72 bp | TGGTTGATCTTCAACATTGTACTGACTTCTTCCCACTaGACATTCCTCAAGGTCCTTCTAGACAAGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: WLIFNIVLTSSH*TFLKVLLDKVR Trigger: TCTTACCTTGTCTAGAAGGACCTTGAGGAATGTCAAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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| CDS-3UTR CAA 90 bp | TCTCGGCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCGCTCTGCTGGGCAGCTaGAAGAAGTCTCTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: SRHPSGSCCTQLPQEQQPALLGS*KKSLFF Trigger: AAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAGC...GGGCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAGGATCCTGAGGGGTGCCGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| CDS-3UTR CAA 90 bp | CCCCCAGCCCCAGACACAAGCTCCTTGAGAGTTCTAGCCATCCTGGGCCTCCCAGCTCTGCTGGGCAGCTaGAAGAAGTCTCTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: PPAPDTSSLRVLAILGLPALLGS*KKSLFF Trigger: AAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAGC...TGGGAGGCCCAGGATGGCTAGAACTCTCAAGGAGCTTGTGTCTGGGGCTGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000156380.4 ENSMUST00000207428.2 ENSMUST00000208950.2 |
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| CDS-3UTR CAA 90 bp | GGTTCCACCCTCATGTTGGTTGATCTTCAACATTGTACTGACTTCTTCCCACTTGCTCTGCTGGGCAGCTaGAAGAAGTCTCTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: GSTLMLVDLQHCTDFFPLALLGS*KKSLFF Trigger: AAAGAAGAGAGACTTCTTCAAGCTGCCCAGCAGAGC...AAGTGGGAAGAAGTCAGTACAATGTTGAAGATCAACCAACATGAGGGTGGAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207428.2 |
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