Pregenerated sensors for PERP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019851Ensembl transcript IDs: ENSMUST00000019998.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATGGCACTGCTGTGACAGTGGTGACCCTCCTGTGCCTTCCTACCTaGCCTCTTCACATCCACCAGTTGGGAGGGATTAGGCCTAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: HGTAVTVVTLLCLPT*PLHIHQLGGIRPSP Trigger: TGGACTAGGCCTAATCCCTCCCAACTGGTGGATGTGAAGAGGTCAGGTAGGAAGGCACAGGAGGGTCACCACTGTCACAGCAGTGCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR CCA 90 bp | GCACTGAGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTGCATaGCACTGCTGTGACAGTGGTGACCCTCCTGTGCCTTCCTACCTG | + |
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Preference number: 1 (lower is better) Translates to: ALRRNTAMSSPRMSA*HCCDSGDPPVPSYL Trigger: CAGGTAGGAAGGCACAGGAGGGTCACCACTGTCACAGCAGTGCCATGCAGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCTCAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR GCA 90 bp | AGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTGCATGGCACTaGTGTGACAGTGGTGACCCTCCTGTGCCTTCCTACCTGACCTCT | + |
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Preference number: 1 (lower is better) Translates to: RRNTAMSSPRMSAWH*CDSGDPPVPSYLTS Trigger: AGAGGTCAGGTAGGAAGGCACAGGAGGGTCACCACTGTCACAGCAGTGCCATGCAGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR TCA 90 bp | AACCCATTCTATGTGGAAAAACAGAAGCCCCATCAGATTATTAAATaGGAGGCTGCTGCATTTCTACCTTATCAAGTTTCACAGGCATAT | + |
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Preference number: 1 (lower is better) Translates to: NPFYVEKQKPHQIIK*EAAAFLPYQVSQAY Trigger: ATATGCCTGTGAAACTTGATAAGGTAGAAATGCAGCAGCCTCTCATTTAATAATCTGATGGGGCTTCTGTTTTTCCACATAGAATGGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR CAA 90 bp | CCCTTCCGGTATGTATTCAGAGACACGCATTCCCAAATTTTCCACTaGCATGTACTATACAGATATTTTAAGTCTGCTTACCAAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PFRYVFRDTHSQIFH*HVLYRYFKSAYQGR Trigger: TCTTCCTTGGTAAGCAGACTTAAAATATCTGTATAGTACATGCAAGTGGAAAATTTGGGAATGCGTGTCTCTGAATACATACCGGAAGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR TCA 72 bp | GCTGTGACAGTGGTGACCCTCCTGTGCCTTCCTACCTaGCCTCTTCACATCCACCAGTTGGGAGGGATTAGG | + |
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Preference number: 3 (lower is better) Translates to: AVTVVTLLCLPT*PLHIHQLGGIR Trigger: CCTAATCCCTCCCAACTGGTGGATGTGAAGAGGTCAGGTAGGAAGGCACAGGAGGGTCACCACTGTCACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR CCA 72 bp | AGAAACACTGCCATGTCTTCTCCTAGGATGTCTGCATaGCACTGCTGTGACAGTGGTGACCCTCCTGTGCCT | + |
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Preference number: 3 (lower is better) Translates to: RNTAMSSPRMSA*HCCDSGDPPVP Trigger: AGGCACAGGAGGGTCACCACTGTCACAGCAGTGCCATGCAGACATCCTAGGAGAAGACATGGCAGTGTTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR-3UTR CAA 90 bp | AGATGTGCTAACACGGCTTCTGCCCACACCCTACCCCTCTACACTACGGGAAAACTCCTCAGATCCATCTaGCAGCAGGCTTTTCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: RCANTASAHTLPLYTTGKLLRSI*QQAFLR Trigger: CCTGAGAAAAGCCTGCTGCAAGATGGATCTGAGGAG...TTTTCCCGTAGTGTAGAGGGGTAGGGTGTGGGCAGAAGCCGTGTTAGCACATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR-3UTR CAA 90 bp | TTAAGGGAAGAAGCACTGAGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTTTGGTCATGGAAGTTTaGCCAGTGACTTTCCTCCTC | + |
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Preference number: 3 (lower is better) Translates to: LREEALRRNTAMSSPRMSLVMEV*PVTFLL Trigger: GAGGAGGAAAGTCACTGGCAAAACTTCCATGACCAA...AGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCTCAGTGCTTCTTCCCTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR CCA 90 bp | AGATGTGCTAACACGGCTTCTGCCCACACCCTACCCCTCTACACTACGGGAAAAAGCCACAGAAAAGCGTaGCTGCAGCTGCTCGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: RCANTASAHTLPLYTTGKSHRKA*LQLLVP Trigger: GGGGACGAGCAGCTGCAGCCACGCTTTTCTGTGGCT...TTTTCCCGTAGTGTAGAGGGGTAGGGTGTGGGCAGAAGCCGTGTTAGCACATCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR TCA 90 bp | AGATGTGCTAACACGGCTTCTGCCCACACCCTACCCCTCTACACTACGGGAAAAAGATTACCAGGGAGATaGTCTGGAATATGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: RCANTASAHTLPLYTTGKRLPGR*SGIWQP Trigger: TGGCTGCCATATTCCAGATCATCTCCCTGGTAATCT...TTTTCCCGTAGTGTAGAGGGGTAGGGTGTGGGCAGAAGCCGTGTTAGCACATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR GCA 90 bp | TTAAGGGAAGAAGCACTGAGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTAGCTGCTCGTCCCCATaGGTACTCCATGAGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: LREEALRRNTAMSSPRMSSCSSP*VLHEAL Trigger: CAGAGCCTCATGGAGTACGCATGGGGACGAGCAGCT...AGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCTCAGTGCTTCTTCCCTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR GCA 90 bp | TTAAGGGAAGAAGCACTGAGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTACAGAAAAGCGTGGCTaGAGCTGCTCGTCCCCATGC | + |
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Preference number: 4 (lower is better) Translates to: LREEALRRNTAMSSPRMSTEKRG*SCSSPC Trigger: GCATGGGGACGAGCAGCTGCAGCCACGCTTTTCTGT...AGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCTCAGTGCTTCTTCCCTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR CCA 90 bp | TTAAGGGAAGAAGCACTGAGAAGAAACACTGCCATGTCTTCTCCTAGGATGTCTACCAGGGAGATGATCTaGAATATGGCAGCCAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: LREEALRRNTAMSSPRMSTREMI*NMAASA Trigger: CGCACTGGCTGCCATATTCCAGATCATCTCCCTGGT...AGACATCCTAGGAGAAGACATGGCAGTGTTTCTTCTCAGTGCTTCTTCCCTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR GCA 90 bp | AGAAGCCCCATCAGATTATTAAATGAGAGGCTGCTGCATTTCTACCTTATCAAGGAATATGGCAGCCAGTaGGAGGAGGCCTCCAATGAC | + |
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Preference number: 4 (lower is better) Translates to: RSPIRLLNERLLHFYLIKEYGSQ*EEASND Trigger: GTCATTGGAGGCCTCCTCGCACTGGCTGCCATATTC...CTTGATAAGGTAGAAATGCAGCAGCCTCTCATTTAATAATCTGATGGGGCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR TCA 90 bp | AGAAGCCCCATCAGATTATTAAATGAGAGGCTGCTGCATTTCTACCTTATCAAGCGAGGAGGCCTCCAATaGCTCTCAGGAAAACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: RSPIRLLNERLLHFYLIKRGGLQ*LSGKQA Trigger: TGCTTGTTTTCCTGAGAGTCATTGGAGGCCTCCTCG...CTTGATAAGGTAGAAATGCAGCAGCCTCTCATTTAATAATCTGATGGGGCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS-3UTR CCA 90 bp | AGAAGCCCCATCAGATTATTAAATGAGAGGCTGCTGCATTTCTACCTTATCAAGGACGATGTCTGGATGTaGTTGCTAGACTGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: RSPIRLLNERLLHFYLIKDDVWM*LLDCSQ Trigger: CTGGCTGCAGTCTAGCAACCACATCCAGACATCGTC...CTTGATAAGGTAGAAATGCAGCAGCCTCTCATTTAATAATCTGATGGGGCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| 3UTR CAA 72 bp | TATGTATTCAGAGACACGCATTCCCAAATTTTCCACTaGCATGTACTATACAGATATTTTAAGTCTGCTTAC | + |
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Preference number: 4 (lower is better) Translates to: YVFRDTHSQIFH*HVLYRYFKSAY Trigger: GTAAGCAGACTTAAAATATCTGTATAGTACATGCAAGTGGAAAATTTGGGAATGCGTGTCTCTGAATACATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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| CDS CCA 90 bp | GCCAGTGCGAGGAGGCCTCCAATGACTCTCAGGAAAACAAGCATCTaGGGTCCACACAGGGCGAAGAACGAGAGAATGAAGCAGATGCAC | + |
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Preference number: 5 (lower is better) Translates to: ASARRPPMTLRKTSI*GPHRAKNERMKQMH Trigger: GTGCATCTGCTTCATTCTCTCGTTCTTCGCCCTGTGTGGACCCCAGATGCTTGTTTTCCTGAGAGTCATTGGAGGCCTCCTCGCACTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019998.9 |
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