RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PERCC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000114245

Ensembl transcript IDs: ENSMUST00000224277.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCAGACCAGCTGGCCAGTAGATCACTAAAATCTGGTGTGCCCACGTaGAGTAGGCCTAGTGGGTTGGGCACAGGCTCCTTCCAGAAGGAT +
Preference number: 5 (lower is better)
Translates to: ADQLASRSLKSGVPT*SRPSGLGTGSFQKD
Trigger: ATCCTTCTGGAAGGAGCCTGTGCCCAACCCACTAGGCCTACTGCACGTGGGCACACCAGATTTTAGTGATCTACTGGCCAGCTGGTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 90 bp TGGGAGTCTGGGCCACAGCCCTGTGACCCCTCACCTTGCTGGTCCTaGTCTACCTCTTCTTCTTCCTCCTCTTCCTCTTCCTCTTCTTCT +
Preference number: 5 (lower is better)
Translates to: WESGPQPCDPSPCWS*STSSSSSSSSSSSS
Trigger: AGAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAAGAGGTAGACCAGGACCAGCAAGGTGAGGGGTCACAGGGCTGTGGCCCAGACTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 90 bp AGAGCAGCTGGCTGGTTGGCTGTCAGCATAGATGTCTTGGGCATCTaGGTCTTGCCCTGTGTCCTTGCGTCCAAAATACCGCTGGATGTC +
Preference number: 5 (lower is better)
Translates to: RAAGWLAVSIDVLGI*VLPCVLASKIPLDV
Trigger: GACATCCAGCGGTATTTTGGACGCAAGGACACAGGGCAAGACCCAGATGCCCAAGACATCTATGCTGACAGCCAACCAGCCAGCTGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 90 bp CTTCCTCCTCCTCTTCTTCAGAAATTTCTGGAGCCTCCAGGTCTATaGGCAGGAAGGACTCATGTGATGGTAGGGGCAGCCGGAAGTCAC +
Preference number: 5 (lower is better)
Translates to: LPPPLLQKFLEPPGL*AGRTHVMVGAAGSH
Trigger: GTGACTTCCGGCTGCCCCTACCATCACATGAGTCCTTCCTGCCCATAGACCTGGAGGCTCCAGAAATTTCTGAAGAAGAGGAGGAGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 90 bp TGGGCATCTGGGTCTTGCCCTGTGTCCTTGCGTCCAAAATACCGCTaGATGTCACCACTAATGAGCTCTGAGAAGCGCAGAAGCTGCATT +
Preference number: 5 (lower is better)
Translates to: WASGSCPVSLRPKYR*MSPLMSSEKRRSCI
Trigger: AATGCAGCTTCTGCGCTTCTCAGAGCTCATTAGTGGTGACATCCAGCGGTATTTTGGACGCAAGGACACAGGGCAAGACCCAGATGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 90 bp TTCCAGAAGGATGGAGGCAATTTTCTTTGGGTCATGGGAGTAATGTaGCTATACTTCCGCTCTAGCCTTAGTCTTCGGCAAGCTGATATT +
Preference number: 5 (lower is better)
Translates to: FQKDGGNFLWVMGVM*LYFRSSLSLRQADI
Trigger: AATATCAGCTTGCCGAAGACTAAGGCTAGAGCGGAAGTATAGCCACATTACTCCCATGACCCAAAGAAAATTGCCTCCATCCTTCTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CAA 90 bp ATCCCGGGCAGAGCAGCTGGCTGGTTGGCTGTCAGCATAGATGTCTaGGGCATCTGGGTCTTGCCCTGTGTCCTTGCGTCCAAAATACCG +
Preference number: 6 (lower is better)
Translates to: IPGRAAGWLAVSIDV*GIWVLPCVLASKIP
Trigger: CGGTATTTTGGACGCAAGGACACAGGGCAAGACCCAGATGCCCAAGACATCTATGCTGACAGCCAACCAGCCAGCTGCTCTGCCCGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 72 bp AATCTGGTGTGCCCACGTGCAGTAGGCCTAGTGGGTTaGGCACAGGCTCCTTCCAGAAGGATGGAGGCAATT +
Preference number: 6 (lower is better)
Translates to: NLVCPRAVGLVG*AQAPSRRMEAI
Trigger: AATTGCCTCCATCCTTCTGGAAGGAGCCTGTGCCCAACCCACTAGGCCTACTGCACGTGGGCACACCAGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CAA 72 bp AGCATAGTAGAGATCCCGGGCAGAGCAGCTGGCTGGTaGGCTGTCAGCATAGATGTCTTGGGCATCTGGGTC +
Preference number: 6 (lower is better)
Translates to: SIVEIPGRAAGW*AVSIDVLGIWV
Trigger: GACCCAGATGCCCAAGACATCTATGCTGACAGCCAACCAGCCAGCTGCTCTGCCCGGGATCTCTACTATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CAA 90 bp GCTGGCTGGTTGGCTGTCAGCATAGATGTCTTGGGCATCTGGGTCTaGCCCTGTGTCCTTGCGTCCAAAATACCGCTGGATGTCACCACT +
Preference number: 6 (lower is better)
Translates to: AGWLAVSIDVLGIWV*PCVLASKIPLDVTT
Trigger: AGTGGTGACATCCAGCGGTATTTTGGACGCAAGGACACAGGGCAAGACCCAGATGCCCAAGACATCTATGCTGACAGCCAACCAGCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 72 bp GGCTGGTTGGCTGTCAGCATAGATGTCTTGGGCATCTaGGTCTTGCCCTGTGTCCTTGCGTCCAAAATACCG +
Preference number: 6 (lower is better)
Translates to: GWLAVSIDVLGI*VLPCVLASKIP
Trigger: CGGTATTTTGGACGCAAGGACACAGGGCAAGACCCAGATGCCCAAGACATCTATGCTGACAGCCAACCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 72 bp CCTCTTCTTCAGAAATTTCTGGAGCCTCCAGGTCTATaGGCAGGAAGGACTCATGTGATGGTAGGGGCAGCC +
Preference number: 6 (lower is better)
Translates to: PLLQKFLEPPGL*AGRTHVMVGAA
Trigger: GGCTGCCCCTACCATCACATGAGTCCTTCCTGCCCATAGACCTGGAGGCTCCAGAAATTTCTGAAGAAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CCA 72 bp GGGTCTTGCCCTGTGTCCTTGCGTCCAAAATACCGCTaGATGTCACCACTAATGAGCTCTGAGAAGCGCAGA +
Preference number: 6 (lower is better)
Translates to: GSCPVSLRPKYR*MSPLMSSEKRR
Trigger: TCTGCGCTTCTCAGAGCTCATTAGTGGTGACATCCAGCGGTATTTTGGACGCAAGGACACAGGGCAAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CAA 90 bp AGATCACTAAAATCTGGTGTGCCCACGTGCAGTAGGCCTAGTGGGTaGGGCACAGGCTCCTTCCAGAAGGATGGAGGCAATTTTCTTTGG +
Preference number: 6 (lower is better)
Translates to: RSLKSGVPTCSRPSG*GTGSFQKDGGNFLW
Trigger: CCAAAGAAAATTGCCTCCATCCTTCTGGAAGGAGCCTGTGCCCAACCCACTAGGCCTACTGCACGTGGGCACACCAGATTTTAGTGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2
CDS CAA 72 bp CACAGGCTCCTTCCAGAAGGATGGAGGCAATTTTCTTaGGGTCATGGGAGTAATGTGGCTATACTTCCGCTC +
Preference number: 6 (lower is better)
Translates to: HRLLPEGWRQFS*GHGSNVAILPL
Trigger: GAGCGGAAGTATAGCCACATTACTCCCATGACCCAAAGAAAATTGCCTCCATCCTTCTGGAAGGAGCCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224277.2