Pregenerated sensors for PENK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045573Ensembl transcript IDs: ENSMUST00000070375.8, ENSMUST00000133567.2
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAGCACAAAGCAGCATGTaGCAAGAAACATCATTGACA | + |
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Preference number: 2 (lower is better) Translates to: SHKRPILSFKTQKNTDPKAQSSM*QETSLT Trigger: TGTCAATGATGTTTCTTGTCACATGCTGCTTTGTGC...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| 3UTR TCA 72 bp | GACCACGGGGGCAACTGTACAGCACAAAGCAGCATGTaGCAAGAAACATCATTGACAAGGCAGTTGCTCATG | + |
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Preference number: 3 (lower is better) Translates to: DHGGNCTAQSSM*QETSLTRQLLM Trigger: CATGAGCAACTGCCTTGTCAATGATGTTTCTTGTCACATGCTGCTTTGTGCTGTACAGTTGCCCCCGTGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| 3UTR-3UTR CAA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTTCATTGACAAGGCAGTaGCTCATGGGGGATGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: SFKTQKNTDPKITAFRQCSLTRQ*LMGDGA Trigger: TGCTCCATCCCCCATGAGCAACTGCCTTGTCAATGA...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| 3UTR TCA 72 bp | ACTATTGATAACAACATAGCCATAAGAGACCAATACTaGGCTTCAAGACTCAAAAGAACACAGACCCTAAAA | + |
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Preference number: 3 (lower is better) Translates to: TIDNNIAIRDQY*ASRLKRTQTLK Trigger: TTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCTATGTTGTTATCAATAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | ATCATTGACAAGGCAGTTGCTCATGGGGGATGGAGCAGGCTAGTGGGGGTCGGGCATTTAGCGCAGTCCTaGCTGCATTCCGCCTGCACT | + |
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Preference number: 4 (lower is better) Translates to: IIDKAVAHGGWSRLVGVGHLAQS*LHSACT Trigger: AGTGCAGGCGGAATGCAGCCAGGACTGCGCTAAATG...CCCGACCCCCACTAGCCTGCTCCATCCCCCATGAGCAACTGCCTTGTCAATGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR GCA 90 bp | ATCATTGACAAGGCAGTTGCTCATGGGGGATGGAGCAGGCTAGTGGGGGTCGGGAGCCCCCATACCTCTTaGTCATGTCTTCGTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: IIDKAVAHGGWSRLVGVGSPHTS*SCLRHC Trigger: ACAATGACGAAGACATGAGCAAGAGGTATGGGGGCT...CCCGACCCCCACTAGCCTGCTCCATCCCCCATGAGCAACTGCCTTGTCAATGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTAAAGGGAACTCGGGCCTaGACACCTGCAGGAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: TQKNTDPKITAFRQCSYLKGTRA*TPAGDP Trigger: AGGATCTCCTGCAGGTGTCCAGGCCCGAGTTCCCTT...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTGTGCTCTCTTGTTGGTaGCTGTCTTTCGCACGGTTG | + |
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Preference number: 4 (lower is better) Translates to: SFKTQKNTDPKITAFRQCVLSCW*LSFARL Trigger: CAACCGTGCGAAAGACAGCCACCAACAAGAGAGCAC...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR GCA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTGGTGTCTCCCTCATCTaGATCCTTCTTCATGAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SFKTQKNTDPKITAFRQCGVSLI*ILLHEA Trigger: GGCTTCATGAAGAAGGATGCAGATGAGGGAGACACC...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTAGAAATTGATGTCGCCTaGGCGAACCAGGCGGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TQKNTDPKITAFRQCSYLEIDVA*ANQAVA Trigger: AGCTACCGCCTGGTTCGCCCAGGCGACATCAATTTC...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTAAGCCGCCATACCTCTTaGCAAGGATCTCTCCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: TQKNTDPKITAFRQCSYLSRHTS*QGSLLR Trigger: ACGGAGGAGAGATCCTTGCCAAGAGGTATGGCGGCT...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR TCA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGGTCTCCCAGATTTTaGAAGAAGGCAGCTGTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SFKTQKNTDPKITAFRQCRSPRF*KKAAVL Trigger: AAGGACAGCTGCCTTCTTTCAAAATCTGGGAGACCT...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR TCA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTACTGCATCCTTCTTCATaGAGCCGCCATACCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: TQKNTDPKITAFRQCSYLLHPSS*SRHTSW Trigger: CCAAGAGGTATGGCGGCTTCATGAAGAAGGATGCAG...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR GCA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTCTTCGTCATTGTTGGTaGTCTCTTGTTGGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SFKTQKNTDPKITAFRQCLRHCW*SLVGGC Trigger: ACAGCCACCAACAAGAGAGCACCAACAATGACGAAG...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAAGCCTCCGTACTTCTTaGCTAGCAAGTGGCTCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SHKRPILSFKTQKNTDPKSLRTS*LASGSH Trigger: ATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCT...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR GCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAACTTCTGCAGCTCTTTTaGTTCATCTTCCAGTTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SHKRPILSFKTQKNTDPKLLQLF*FIFQLG Trigger: CCCCAACTGGAAGATGAAGCAAAAGAGCTGCAGAAG...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAATGTCTTCGTCATTGTTaGTGCTCTCTTGTTGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: SHKRPILSFKTQKNTDPKCLRHC*CSLVGG Trigger: GCCACCAACAAGAGAGCACCAACAATGACGAAGACA...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAGCTTCATCTTCCAGTTaGGGGCTTCTTTTGAGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SHKRPILSFKTQKNTDPKASSSS*GLLLRL Trigger: AAGCCTCAAAAGAAGCCCCCAACTGGAAGATGAAGC...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CCA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTACTTCTTCTGGCTCCATaGGATATAGCTCGTCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: TQKNTDPKITAFRQCSYLLLLAP*DIARPS Trigger: AGATGGACGAGCTATATCCCATGGAGCCAGAAGAAG...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR GCA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAATCTCATCCTGTTTGCTaGTGTCTTTGTACATGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: SHKRPILSFKTQKNTDPKSHPVC*CLCTCR Trigger: TCGACATGTACAAAGACAGCAGCAAACAGGATGAGA...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CCA 90 bp | CTGTCCTTCACATTCCAGTGTGCACGCCAGGAAATTGATGTCGCCTaGGCGAACCAGGCGGTAGCTGCATTTAGCGCAGTCCTGGCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LSFTFQCARQEIDVA*ANQAVAAFSAVLAA Trigger: TGCAGCCAGGACTGCGCTAAATGCAGCTACCGCCTGGTTCGCCCAGGCGACATCAATTTCCTGGCGTGCACACTGGAATGTGAAGGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS TCA 90 bp | CGGAGGAGTTGGCCAAGGTGTCTCCCTCATCTGCATCCTTCTTCATaGAGCCGCCATACCTCTTGGCAAGGATCTCTCCTCCGTTCGCTT | + |
|
Preference number: 5 (lower is better) Translates to: RRSWPRCLPHLHPSS*SRHTSWQGSLLRSL Trigger: AAGCGAACGGAGGAGAGATCCTTGCCAAGAGGTATGGCGGCTTCATGAAGAAGGATGCAGATGAGGGAGACACCTTGGCCAACTCCTCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS-3UTR CAA 90 bp | ATCATTGACAAGGCAGTTGCTCATGGGGGATGGAGCAGGCTAGTGGGGGTCGGGATGTCTTCGTCATTGTaGGTGCTCTCTTGTTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: IIDKAVAHGGWSRLVGVGMSSSL*VLSCWW Trigger: CCACCAACAAGAGAGCACCAACAATGACGAAGACAT...CCCGACCCCCACTAGCCTGCTCCATCCCCCATGAGCAACTGCCTTGTCAATGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS GCA 90 bp | TTGTACATGTCGATGTTATCCCAAGGGAACTCGGGCCTGGACACCTaGAGGAGATCCTTGCAGGTCTCCCAGATTTTGAAAGAAGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LYMSMLSQGNSGLDT*RRSLQVSQILKEGS Trigger: GCTGCCTTCTTTCAAAATCTGGGAGACCTGCAAGGATCTCCTGCAGGTGTCCAGGCCCGAGTTCCCTTGGGATAACATCGACATGTACAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CCA 90 bp | TACCTCTTGCTCATGTCTTCGTCATTGTTGGTGCTCTCTTGTTGGTaGCTGTCTTTCGCACGGTTGTCTCCCGTTCCCAGTAGCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: YLLLMSSSLLVLSCW*LSFARLSPVPSSSF Trigger: GAAAGAGCTACTGGGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CCA 90 bp | CCTCCGTACCGTTTCATGAAGCCTCCGTACTTCTTGGCTAGCAAGTaGCTCTCATCCTGTTTGCTGCTGTCTTTGTACATGTCGATGTTA | + |
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Preference number: 5 (lower is better) Translates to: PPYRFMKPPYFLASK*LSSCLLLSLYMSML Trigger: TAACATCGACATGTACAAAGACAGCAGCAAACAGGATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACGGTACGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS-3UTR CAA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTAAGCAGATCGGAGGAGTaGGCCAAGGTGTCTCCCTCA | + |
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Preference number: 5 (lower is better) Translates to: TQKNTDPKITAFRQCSYLSRSEE*AKVSPS Trigger: TGAGGGAGACACCTTGGCCAACTCCTCCGATCTGCT...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAGTTGGTGCTCTCTTGTaGGTGGCTGTCTTTCGCACG | + |
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Preference number: 5 (lower is better) Translates to: SHKRPILSFKTQKNTDPKVGALL*VAVFRT Trigger: CGTGCGAAAGACAGCCACCAACAAGAGAGCACCAAC...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTCAGGTCTCCCAGATTTaGAAAGAAGGCAGCTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: SFKTQKNTDPKITAFRQCQVSQI*KEGSCP Trigger: AGGACAGCTGCCTTCTTTCAAAATCTGGGAGACCTG...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | AGCTTCAAGACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAAGCCCCCATACCTCTaGCTCATGTCTTCGTCATTG | + |
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Preference number: 5 (lower is better) Translates to: SFKTQKNTDPKITAFRQCKPPYL*LMSSSL Trigger: CAATGACGAAGACATGAGCAAGAGGTATGGGGGCTT...ACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAAGTTGGGGGCTTCTTTaGAGGCTTCTCATGAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: SHKRPILSFKTQKNTDPKSWGLL*RLLMKP Trigger: GGGCTTCATGAGAAGCCTCAAAAGAAGCCCCCAACT...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | AGCCATAAGAGACCAATACTGAGCTTCAAGACTCAAAAGAACACAGACCCTAAAGCTTCTGCAGCTCTTTaGCTTCATCTTCCAGTTGGG | + |
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Preference number: 5 (lower is better) Translates to: SHKRPILSFKTQKNTDPKASAAL*LHLPVG Trigger: CCCAACTGGAAGATGAAGCAAAAGAGCTGCAGAAGC...TTTAGGGTCTGTGTTCTTTTGAGTCTTGAAGCTCAGTATTGGTCTCTTATGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTAATTGTTGGTGCTCTCTaGTTGGTGGCTGTCTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: TQKNTDPKITAFRQCSYLIVGAL*LVAVFR Trigger: GCGAAAGACAGCCACCAACAAGAGAGCACCAACAAT...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS-3UTR CAA 90 bp | ACTCAAAAGAACACAGACCCTAAAATCACAGCTTTCAGGCAGTGTAGTTATCTATGCTTCATCTTCCAGTaGGGGGCTTCTTTTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TQKNTDPKITAFRQCSYLCFIFQ*GASFEA Trigger: AGCCTCAAAAGAAGCCCCCAACTGGAAGATGAAGCA...TAGATAACTACACTGCCTGAAAGCTGTGATTTTAGGGTCTGTGTTCTTTTGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS TCA 72 bp | GCTGTCCTTCACATTCCAGTGTGCACGCCAGGAAATTaGTGTCGCCTGGGCGAACCAGGCGGTAGCTGCATT | + |
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Preference number: 6 (lower is better) Translates to: AVLHIPVCTPGN*CRLGEPGGSCI Trigger: AATGCAGCTACCGCCTGGTTCGCCCAGGCGACATCAATTTCCTGGCGTGCACACTGGAATGTGAAGGACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CCA 72 bp | ACATTCCAGTGTGCACGCCAGGAAATTGATGTCGCCTaGGCGAACCAGGCGGTAGCTGCATTTAGCGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: TFQCARQEIDVA*ANQAVAAFSAV Trigger: GACTGCGCTAAATGCAGCTACCGCCTGGTTCGCCCAGGCGACATCAATTTCCTGGCGTGCACACTGGAATGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 90 bp | CGGTTGTCTCCCGTTCCCAGTAGCTCTTTCAGCAGATCGGAGGAGTaGGCCAAGGTGTCTCCCTCATCTGCATCCTTCTTCATGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: RLSPVPSSSFSRSEE*AKVSPSSASFFMKP Trigger: CGGCTTCATGAAGAAGGATGCAGATGAGGGAGACACCTTGGCCAACTCCTCCGATCTGCTGAAAGAGCTACTGGGAACGGGAGACAACCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CCA 72 bp | CCGTTCCCAGTAGCTCTTTCAGCAGATCGGAGGAGTTaGCCAAGGTGTCTCCCTCATCTGCATCCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: PFPVALSADRRS*PRCLPHLHPSS Trigger: TGAAGAAGGATGCAGATGAGGGAGACACCTTGGCCAACTCCTCCGATCTGCTGAAAGAGCTACTGGGAACGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 72 bp | TTGGTGCTCTCTTGTTGGTGGCTGTCTTTCGCACGGTaGTCTCCCGTTCCCAGTAGCTCTTTCAGCAGATCG | + |
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Preference number: 6 (lower is better) Translates to: LVLSCWWLSFAR*SPVPSSSFSRS Trigger: CGATCTGCTGAAAGAGCTACTGGGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 90 bp | TCGTCATTGTTGGTGCTCTCTTGTTGGTGGCTGTCTTTCGCACGGTaGTCTCCCGTTCCCAGTAGCTCTTTCAGCAGATCGGAGGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SSLLVLSCWWLSFAR*SPVPSSSFSRSEEL Trigger: CAACTCCTCCGATCTGCTGAAAGAGCTACTGGGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS GCA 72 bp | TCGATGTTATCCCAAGGGAACTCGGGCCTGGACACCTaGAGGAGATCCTTGCAGGTCTCCCAGATTTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: SMLSQGNSGLDT*RRSLQVSQILK Trigger: TTTCAAAATCTGGGAGACCTGCAAGGATCTCCTGCAGGTGTCCAGGCCCGAGTTCCCTTGGGATAACATCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CCA 72 bp | CTCATGTCTTCGTCATTGTTGGTGCTCTCTTGTTGGTaGCTGTCTTTCGCACGGTTGTCTCCCGTTCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: LMSSSLLVLSCW*LSFARLSPVPS Trigger: ACTGGGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CCA 72 bp | AGCCCCCATACCTCTTGCTCATGTCTTCGTCATTGTTaGTGCTCTCTTGTTGGTGGCTGTCTTTCGCACGGT | + |
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Preference number: 6 (lower is better) Translates to: SPHTSCSCLRHC*CSLVGGCLSHG Trigger: ACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTATGGGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CAA 72 bp | AAGCCTCCGTACCGTTTCATGAAGCCTCCGTACTTCTaGGCTAGCAAGTGGCTCTCATCCTGTTTGCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: KPPYRFMKPPYF*ASKWLSSCLLL Trigger: CAGCAGCAAACAGGATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACGGTACGGAGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 72 bp | CTTGCTCATGTCTTCGTCATTGTTGGTGCTCTCTTGTaGGTGGCTGTCTTTCGCACGGTTGTCTCCCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LAHVFVIVGALL*VAVFRTVVSRS Trigger: GGAACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CAA 72 bp | CCTCTTGCTCATGTCTTCGTCATTGTTGGTGCTCTCTaGTTGGTGGCTGTCTTTCGCACGGTTGTCTCCCGT | + |
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Preference number: 6 (lower is better) Translates to: PLAHVFVIVGAL*LVAVFRTVVSR Trigger: ACGGGAGACAACCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CAA 72 bp | AAGCCCCCATACCTCTTGCTCATGTCTTCGTCATTGTaGGTGCTCTCTTGTTGGTGGCTGTCTTTCGCACGG | + |
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Preference number: 6 (lower is better) Translates to: KPPYLLLMSSSL*VLSCWWLSFAR Trigger: CCGTGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTATGGGGGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS TCA 72 bp | ACACCTGCAGGAGATCCTTGCAGGTCTCCCAGATTTTaGAAGAAGGCAGCTGTCCTTCACATTCCAGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: TPAGDPCRSPRF*KKAAVLHIPVC Trigger: GCACACTGGAATGTGAAGGACAGCTGCCTTCTTTCAAAATCTGGGAGACCTGCAAGGATCTCCTGCAGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 72 bp | ATGAAGCCCCCATACCTCTTGCTCATGTCTTCGTCATaGTTGGTGCTCTCTTGTTGGTGGCTGTCTTTCGCA | + |
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Preference number: 6 (lower is better) Translates to: MKPPYLLLMSSS*LVLSCWWLSFA Trigger: TGCGAAAGACAGCCACCAACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTATGGGGGCTTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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| CDS CAA 90 bp | TTCTTCATGAAGCCTCCGTACCGTTTCATGAAGCCTCCGTACTTCTaGGCTAGCAAGTGGCTCTCATCCTGTTTGCTGCTGTCTTTGTAC | + |
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Preference number: 6 (lower is better) Translates to: FFMKPPYRFMKPPYF*ASKWLSSCLLLSLY Trigger: GTACAAAGACAGCAGCAAACAGGATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACGGTACGGAGGCTTCATGAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CCA 72 bp | CGTTTCATGAAGCCTCCGTACTTCTTGGCTAGCAAGTaGCTCTCATCCTGTTTGCTGCTGTCTTTGTACATG | + |
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Preference number: 6 (lower is better) Translates to: RFMKPPYFLASK*LSSCLLLSLYM Trigger: CATGTACAAAGACAGCAGCAAACAGGATGAGAGCCACTTGCTAGCCAAGAAGTACGGAGGCTTCATGAAACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070375.8 ENSMUST00000133567.2 |
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| CDS CAA 72 bp | CTTCTTTTGAGGCTTCTCATGAAGCCCCCATACCTCTaGCTCATGTCTTCGTCATTGTTGGTGCTCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: LLLRLLMKPPYL*LMSSSLLVLSC Trigger: ACAAGAGAGCACCAACAATGACGAAGACATGAGCAAGAGGTATGGGGGCTTCATGAGAAGCCTCAAAAGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070375.8 |
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