Pregenerated sensors for PEF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028779Ensembl transcript IDs: ENSMUST00000030563.6, ENSMUST00000118199.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGTGAGGGGTCCGAGTTTTGGTGGTCATGAGCCTCATCAGATATaGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: PVRGPSFGGHEPHQI*PRWQNVQASCAGKA Trigger: GGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATATCTGATGAGGCTCATGACCACCAAAACTCGGACCCCTCACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR TCA 90 bp | TGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAACATACAAGGACTaGGGAGCTGAGGGACCCCAGGCTCTGGTCCCAGCAAATCTCTCT | + |
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Preference number: 1 (lower is better) Translates to: CAGKASGKLMLTYKD*GAEGPQALVPANLS Trigger: AGAGAGATTTGCTGGGACCAGAGCCTGGGGTCCCTCAGCTCCTCAGTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR GCA 90 bp | GCCTCATCAGATATGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTaGAGGCAAAGCCTCAGGAAAATTAATGTTAACATACAAGGACTG | + |
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Preference number: 1 (lower is better) Translates to: ASSDMAEMAECPSFL*RQSLRKINVNIQGL Trigger: CAGTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATATCTGATGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR CAA 90 bp | GATAGTCAAGCTCCGCCCTTCCTAGCTCAGGCTAGGAAACACTCTTaGCTAGGAGAGGAGGAAAGGAGGGGCCCACATCCCCTGGTGTGC | + |
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Preference number: 2 (lower is better) Translates to: DSQAPPFLAQARKHS*LGEEERRGPHPLVC Trigger: GCACACCAGGGGATGTGGGCCCCTCCTTTCCTCCTCTCCTAGCAAAGAGTGTTTCCTAGCCTGAGCTAGGAAGGGCGGAGCTTGACTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR TCA 90 bp | ATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGGAACGTCAAGTAGGCAGCCAATaGGCACTTAGCACTGGCATC | + |
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Preference number: 2 (lower is better) Translates to: MLAVGCDNVPGERSWVERQVGSQ*ALSTGI Trigger: GATGCCAGTGCTAAGTGCTCATTGGCTGCCTACTTG...ACGTTCCACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR TCA 90 bp | TATGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAACAAGTAGGCAGCCAATaGGCACTTAGCACTGGCATC | + |
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Preference number: 2 (lower is better) Translates to: YGRDGRMSKLLVQAKPQEQVGSQ*ALSTGI Trigger: GATGCCAGTGCTAAGTGCTCATTGGCTGCCTACTTG...TTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR CCA 90 bp | ATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGGAACGTAGAGGCCAGGACAGCTaGCCAGACACTAACTCCATT | + |
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Preference number: 2 (lower is better) Translates to: MLAVGCDNVPGERSWVERRGQDS*PDTNSI Trigger: AATGGAGTTAGTGTCTGGCCAGCTGTCCTGGCCTCT...ACGTTCCACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR CCA 90 bp | ATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGAGGGACCCCAGGCTCTaGTCCCAGCAAATCTCTCTC | + |
|
Preference number: 2 (lower is better) Translates to: ITMLAVGCDNVPGERSWVRDPRL*SQQISL Trigger: GAGAGAGATTTGCTGGGACCAGAGCCTGGGGTCCCT...CACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR TCA 90 bp | TGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTACAAGGACTGAGGAGCTaGGGGACCCCAGGCTCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: WQNVQASCAGKASGKLMLQGLRS*GTPGSG Trigger: ACCAGAGCCTGGGGTCCCTCAGCTCCTCAGTCCTTG...TAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR TCA 72 bp | AAAGCCTCAGGAAAATTAATGTTAACATACAAGGACTaGGGAGCTGAGGGACCCCAGGCTCTGGTCCCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: KASGKLMLTYKD*GAEGPQALVPA Trigger: TGCTGGGACCAGAGCCTGGGGTCCCTCAGCTCCTCAGTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR CAA 90 bp | ATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGGCTAGGAAACACTCTTaGCTAGGAGAGGAGGAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: ITMLAVGCDNVPGERSWVARKHS*LGEEER Trigger: CCTTTCCTCCTCTCCTAGCAAAGAGTGTTTCCTAGC...CACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAACAAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGGCTAGGAAACACTCTTaGCTAGGAGAGGAGGAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: TNKQITMLAVGCDNVPGEARKHS*LGEEER Trigger: CCTTTCCTCCTCTCCTAGCAAAGAGTGTTTCCTAGC...CTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTTGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | GAGAGAAGCTGGGTGGAACGTGGCAGCCCAGTGAGGGGTCCGAGTTTTGGTGGTTCCATAGCCACCACCTaGGGGCAGTCCACTGCCATA | + |
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Preference number: 4 (lower is better) Translates to: ERSWVERGSPVRGPSFGGSIATT*GQSTAI Trigger: TATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGGA...ACCACCAAAACTCGGACCCCTCACTGGGCTGCCACGTTCCACCCAGCTTCTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR CAA 72 bp | GCTCCGCCCTTCCTAGCTCAGGCTAGGAAACACTCTTaGCTAGGAGAGGAGGAAAGGAGGGGCCCACATCCC | + |
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Preference number: 4 (lower is better) Translates to: APPFLAQARKHS*LGEEERRGPHP Trigger: GGGATGTGGGCCCCTCCTTTCCTCCTCTCCTAGCAAAGAGTGTTTCCTAGCCTGAGCTAGGAAGGGCGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | TACTCTAGGGCCCCTACTCCAAGGCAAGACCACTCCACAGCCCAGGATAGTCAAAGTCCACTGCCATACTaGCCCCCACCATGGGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: YSRAPTPRQDHSTAQDSQSPLPY*PPPWGG Trigger: TCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACT...TTGACTATCCTGGGCTGTGGAGTGGTCTTGCCTTGGAGTAGGGGCCCTAGAGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | TCTAGGGCCCCTACTCCAAGGCAAGACCACTCCACAGCCCAGGATAGTCAAGCTGCCATATGGTCCACTTaGAGTTCCCGAGGGGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: SRAPTPRQDHSTAQDSQAAIWST*SSRGDS Trigger: GGAGTCCCCTCGGGAACTCCAAGTGGACCATATGGC...AGCTTGACTATCCTGGGCTGTGGAGTGGTCTTGCCTTGGAGTAGGGGCCCTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | GAGAGAAGCTGGGTGGAACGTGGCAGCCCAGTGAGGGGTCCGAGTTTTGGTGGTGTCAACACCTGCAGCTaGGTACACACCTTGATGAAG | + |
|
Preference number: 4 (lower is better) Translates to: ERSWVERGSPVRGPSFGGVNTCS*VHTLMK Trigger: CTTCATCAAGGTGTGTACCCAGCTGCAGGTGTTGAC...ACCACCAAAACTCGGACCCCTCACTGGGCTGCCACGTTCCACCCAGCTTCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | ATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGGAACGTTCCAGGCACCTGTCCTaGAGCTCCTGGGCAACTCTG | + |
|
Preference number: 4 (lower is better) Translates to: MLAVGCDNVPGERSWVERSRHLS*SSWATL Trigger: CAGAGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGA...ACGTTCCACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | TGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAAGTGATCGGCATCCACTaGCTGGAACCAGGAGTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: WPRWQNVQASCAGKASGKVIGIH*LEPGVG Trigger: GCCTACTCCTGGTTCCAGTCAGTGGATGCCGATCAC...TTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | TCTAGGGCCCCTACTCCAAGGCAAGACCACTCCACAGCCCAGGATAGTCAAGCTGTCAACACCTGCAGCTaGGTACACACCTTGATGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SRAPTPRQDHSTAQDSQAVNTCS*VHTLMK Trigger: CTTCATCAAGGTGTGTACCCAGCTGCAGGTGTTGAC...AGCTTGACTATCCTGGGCTGTGGAGTGGTCTTGCCTTGGAGTAGGGGCCCTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | GATATGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGCCTGCTTCAGCTCCTTaGGGGAGATATAGCCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: DMAEMAECPSFLCRQSLRPASAP*GRYSHC Trigger: ACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGG...CCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | AATGAGCACTTAGCACTGGCATCAGGGAGTAGAGGGGGAAAGCCAGAGGCCAGGAGGTTCCTCCACTGCTaGAGGAATTTCCATAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: NEHLALASGSRGGKPEARRFLHC*RNFHKA Trigger: AGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCT...CCTGGCCTCTGGCTTTCCCCCTCTACTCCCTGATGCCAGTGCTAAGTGCTCATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | ATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGGAACGTCCTGCTTCAGCTCCTTaGGGGAGATATAGCCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: MLAVGCDNVPGERSWVERPASAP*GRYSHC Trigger: ACAGTGGCTATATCTCCCTCAAGGAGCTGAAGCAGG...ACGTTCCACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | AATGAGCACTTAGCACTGGCATCAGGGAGTAGAGGGGGAAAGCCAGAGGCCAGGAAGAGGTTCCTCCACTaGTGGAGGAATTTCCATAAG | + |
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Preference number: 4 (lower is better) Translates to: NEHLALASGSRGGKPEARKRFLH*WRNFHK Trigger: CTTATGGAAATTCCTCCAGCAGTGGAGGAACCTCTT...CCTGGCCTCTGGCTTTCCCCCTCTACTCCCTGATGCCAGTGCTAAGTGCTCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | GCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTACCATAGGGACCCCCTaGAGGTATACCGCCATATGG | + |
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Preference number: 4 (lower is better) Translates to: AEMAECPSFLCRQSLRKITIGTP*RYTAIW Trigger: CCATATGGCGGTATACCTCCAGGGGGTCCCTATGGT...AATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | ATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCTGGGTGATCTGGGAGAGCGCTTaGTGCAGCTCTGTGGAGCTA | + |
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Preference number: 4 (lower is better) Translates to: ITMLAVGCDNVPGERSWVIWESA*CSSVEL Trigger: TAGCTCCACAGAGCTGCAGCAAGCGCTCTCCCAGAT...CACCCAGCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | ATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTTCCAGGCACCTGTCCTaGAGCTCCTGGGCAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: MAECPSFLCRQSLRKINVSRHLS*SSWATL Trigger: CAGAGTTGCCCAGGAGCTGCAGGACAGGTGCCTGGA...AACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | AAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCGCCATATGGTCCACTTaGAGTTCCCGAGGGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: KQITMLAVGCDNVPGERSAIWST*SSRGDS Trigger: GGAGTCCCCTCGGGAACTCCAAGTGGACCATATGGC...GCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | TATGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAGGTTCCTCCACTGCTaGAGGAATTTCCATAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: YGRDGRMSKLLVQAKPQERFLHC*RNFHKA Trigger: AGCCTTATGGAAATTCCTCCAGCAGTGGAGGAACCT...TTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | ATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTGTGATCGGCATCCACTaGCTGGAACCAGGAGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: MAECPSFLCRQSLRKINVVIGIH*LEPGVG Trigger: GCCTACTCCTGGTTCCAGTCAGTGGATGCCGATCAC...AACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | AAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCAGCCGGCGACATCAATaGGGCCAGACTTGGTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: KQITMLAVGCDNVPGERSSRRHQ*GQTWSC Trigger: ACAAGACCAAGTCTGGCCGCATTGATGTCGCCGGCT...GCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | CAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAACATACAAGGACAGTCCACTGCCATACTaGCCCCCACCATGGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: QASCAGKASGKLMLTYKDSPLPY*PPPWGG Trigger: TCCTCCCCATGGTGGGGGCCAGTATGGCAGTGGACT...GTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | ACAAACAAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGTCCCGGTCATACTGCTaGAAGAGGTTCCTCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: TNKQITMLAVGCDNVPGESRSYC*KRFLHC Trigger: GCAGTGGAGGAACCTCTTTCAGCAGTATGACCGGGA...CTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTTGTTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | TGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTATCCCGGTCATACTGCTaGAAGAGGTTCCTCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: WQNVQASCAGKASGKLMLSRSYC*KRFLHC Trigger: GCAGTGGAGGAACCTCTTTCAGCAGTATGACCGGGA...TAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR GCA 90 bp | ACAAACAAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGCCGGCGACATCAATaGGGCCAGACTTGGTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: TNKQITMLAVGCDNVPGESRRHQ*GQTWSC Trigger: ACAAGACCAAGTCTGGCCGCATTGATGTCGCCGGCT...CTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTTGTTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | CAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAACATACAAGGACCTGTCCTGCAGCTCCTaGGCAACTCTGTCCGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: QASCAGKASGKLMLTYKDLSCSS*ATLSVW Trigger: CCAAACGGACAGAGTTGCCCAGGAGCTGCAGGACAG...GTCCTTGTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | ACAAACAAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGACCATAGGGACCCCCTaGAGGTATACCGCCATATGG | + |
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Preference number: 4 (lower is better) Translates to: TNKQITMLAVGCDNVPGETIGTP*RYTAIW Trigger: CCATATGGCGGTATACCTCCAGGGGGTCCCTATGGT...CTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTTGTTTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CCA 90 bp | AATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAACATACTCCATAGCCACCACCTaGGGGCAGTCCACTGCCATA | + |
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Preference number: 4 (lower is better) Translates to: NVQASCAGKASGKLMLTYSIATT*GQSTAI Trigger: TATGGCAGTGGACTGCCCCCAGGTGGTGGCTATGGA...GTATGTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR TCA 90 bp | TGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAGGCATGTCTCGTCATTaGATGAGGACCAGTTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: WQNVQASCAGKASGKLMLGMSRH*MRTSWS Trigger: ACTCCAACTGGTCCTCATTCAATGACGAGACATGCC...TAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| 3UTR CAA 72 bp | TCAGATATGGCCGAGATGGCAGAATGTCCAAGCTTCTaGTGCAGGCAAAGCCTCAGGAAAATTAATGTTAAC | + |
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Preference number: 4 (lower is better) Translates to: SDMAEMAECPSF*CRQSLRKINVN Trigger: GTTAACATTAATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCATATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS GCA 90 bp | CACCTTGATGAAGCAGTCAAGCTGCATGGCGGGAATAGCAGAGCGTaGGCAGTACCGGGAAACCAGGAGCTGCGTGAACTGAGGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: HLDEAVKLHGGNSRA*AVPGNQELRELRAQ Trigger: CTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGGTACTGCGCACGCTCTGCTATTCCCGCCATGCAGCTTGACTGCTTCATCAAGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CAA 90 bp | TGGCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAACGCCATATGGTCCACTaGGAGTTCCCGAGGGGACTC | + |
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Preference number: 5 (lower is better) Translates to: WPRWQNVQASCAGKASGKRHMVH*EFPRGL Trigger: GAGTCCCCTCGGGAACTCCAAGTGGACCATATGGCG...TTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CAA 90 bp | AAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGAAGCCGCCATATGGTCCACTaGGAGTTCCCGAGGGGACTC | + |
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Preference number: 5 (lower is better) Translates to: KQITMLAVGCDNVPGERSRHMVH*EFPRGL Trigger: GAGTCCCCTCGGGAACTCCAAGTGGACCATATGGCG...GCTTCTCTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CAA 90 bp | GCCGAGATGGCAGAATGTCCAAGCTTCTTGTGCAGGCAAAGCCTCAGGAAAATTAGGCATGTCTCGTCATaGAATGAGGACCAGTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: AEMAECPSFLCRQSLRKIRHVSS*NEDQLE Trigger: CTCCAACTGGTCCTCATTCAATGACGAGACATGCCT...AATTTTCCTGAGGCTTTGCCTGCACAAGAAGCTTGGACATTCTGCCATCTCGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS-3UTR CAA 90 bp | ACAAACAAGCAAATTACAATGTTGGCAGTAGGATGTGACAATGTTCCTGGGGAGAGGCATGTCTCGTCATaGAATGAGGACCAGTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: TNKQITMLAVGCDNVPGERHVSS*NEDQLE Trigger: CTCCAACTGGTCCTCATTCAATGACGAGACATGCCT...CTCCCCAGGAACATTGTCACATCCTACTGCCAACATTGTAATTTGCTTGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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| CDS GCA 72 bp | GAAGCAGTCAAGCTGCATGGCGGGAATAGCAGAGCGTaGGCAGTACCGGGAAACCAGGAGCTGCGTGAACTG | + |
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Preference number: 6 (lower is better) Translates to: EAVKLHGGNSRA*AVPGNQELREL Trigger: CAGTTCACGCAGCTCCTGGTTTCCCGGTACTGCGCACGCTCTGCTATTCCCGCCATGCAGCTTGACTGCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030563.6 ENSMUST00000118199.8 |
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