Pregenerated sensors for PEBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032959Ensembl transcript IDs: ENSMUST00000036951.13, ENSMUST00000111973.8, ENSMUST00000142428.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GGCTCAGCTAAGATGGGAGTCTTGAGTTGTCTCAGTTaGGGGACAGGGCCCTTAAAGACCCCACTGTGCCCG | + |
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Preference number: 3 (lower is better) Translates to: GSAKMGVLSCLS*GTGPLKTPLCP Trigger: CGGGCACAGTGGGGTCTTTAAGGGCCCTGTCCCCCAACTGAGACAACTCAAGACTCCCATCTTAGCTGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| 3UTR TCA 72 bp | GCCAGACATAGCGGTGGAGACCTCAAATCCTCTGCCTaGAACCTTCTGAGCCACCAGTTTATCAAGCAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: ARHSGGDLKSSA*NLLSHQFIKQA Trigger: AGCTTGCTTGATAAACTGGTGGCTCAGAAGGTTTCAGGCAGAGGATTTGAGGTCTCCACCGCTATGTCTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142428.2 |
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| CDS-3UTR GCA 90 bp | GAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACCGGCTCGTCCACCTCCTaGAAGCACAAGGGCCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: EEHALHNLTRLWGPLCSTGSSTS*KHKGPA Trigger: GGCCGGGCCCTTGTGCTTGCAGGAGGTGGACGAGCC...GGTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036951.13 ENSMUST00000111973.8 |
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| CDS-3UTR GCA 90 bp | GGAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACGACCTAGGGCATCTGTaGCACTGGGAGGCCCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: GRACFTQLNKAVGAPVQHDLGHL*HWEARS Trigger: GCTCCGGGCCTCCCAGTGGCACAGATGCCCTAGGTC...GTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000111973.8 |
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| CDS-3UTR CCA 90 bp | GAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACCGGAGACCTGTGCCACTaGGAGGCCCGGAGCCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: EEHALHNLTRLWGPLCSTGDLCH*EARSPH Trigger: ATGTGGGCTCCGGGCCTCCCAGTGGCACAGGTCTCC...GGTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR GCA 90 bp | GCAAGGGGCTTAAGAGGGTCTCTCTCCACAGCAGCACTGTTCTTTAGACACTTGGGCTCGTCCACCTCCTaGAAGCACAAGGGCCCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: ARGLRGSLSTAALFFRHLGSSTS*KHKGPA Trigger: GGCCGGGCCCTTGTGCTTGCAGGAGGTGGACGAGCC...CAAGTGTCTAAAGAACAGTGCTGCTGTGGAGAGAGACCCTCTTAAGCCCCTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR GCA 90 bp | TTCTGGACAGTTTCCTTGTTCAACCACTCACAGACACCACCAGCTCCAGCTCTCAGCGGTGGAGACCTGTaGCACTGGGAGGCCCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: FWTVSLFNHSQTPPAPALSGGDL*HWEARS Trigger: GCTCCGGGCCTCCCAGTGGCACAGGTCTCCACCGCT...GAGAGCTGGAGCTGGTGGTGTCTGTGAGTGGTTGAACAAGGAAACTGTCCAGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR GCA 90 bp | GGAGGATCAACACACTCGGCAGCTCAGGTGACTTTTGCCTACCCCACTGAGAAGACCACCAGGAAGTGGTaGCACTCCCTGAATTTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GGSTHSAAQVTFAYPTEKTTRKW*HSLNLG Trigger: TCCCAAATTCAGGGAGTGGCACCACTTCCTGGTGGT...CTTCTCAGTGGGGTAGGCAAAAGTCACCTGAGCTGCCGAGTGTGTTGATCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR GCA 90 bp | GAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACCACCACCAGGAAGTGGTaGCACTCCCTGAATTTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: EEHALHNLTRLWGPLCSTTTRKW*HSLNLG Trigger: TCCCAAATTCAGGGAGTGGCACCACTTCCTGGTGGT...GGTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036951.13 ENSMUST00000111973.8 |
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| CDS-3UTR GCA 90 bp | GGAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACTACTTCCCTGACAGCTaGTCGTACAGCTTGGGCACA | + |
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Preference number: 4 (lower is better) Translates to: GRACFTQLNKAVGAPVQHYFPDS*SYSLGT Trigger: TGTGCCCAAGCTGTACGAGCAGCTGTCAGGGAAGTA...GTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036951.13 ENSMUST00000111973.8 |
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| CDS-3UTR CCA 90 bp | GAAGAGCATGCTTTACACAACTTAACAAGGCTGTGGGGGCCCCTGTGCAGCACCGGCCTGTTCATAACCTaGGTGGGCGTTAGCACTTTG | + |
|
Preference number: 4 (lower is better) Translates to: EEHALHNLTRLWGPLCSTGLFIT*VGVSTL Trigger: CAAAGTGCTAACGCCCACCCAGGTTATGAACAGGCC...GGTGCTGCACAGGGGCCCCCACAGCCTTGTTAAGTTGTGTAAAGCATGCTCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036951.13 ENSMUST00000111973.8 |
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| 3UTR CAA 72 bp | GGGTCTCTCTCCACAGCAGCACTGTTCTTTAGACACTaGATACCTACGCAGCCACCTGATCTGGACAGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GSLSTAALFFRH*IPTQPPDLDSQ Trigger: CTGACTGTCCAGATCAGGTGGCTGCGTAGGTATCAAGTGTCTAAAGAACAGTGCTGCTGTGGAGAGAGACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR GCA 90 bp | GCAAGGGGCTTAAGAGGGTCTCTCTCCACAGCAGCACTGTTCTTTAGACACTTGTACTTCCCTGACAGCTaGTCGTACAGCTTGGGCACA | + |
|
Preference number: 4 (lower is better) Translates to: ARGLRGSLSTAALFFRHLYFPDS*SYSLGT Trigger: TGTGCCCAAGCTGTACGAGCAGCTGTCAGGGAAGTA...CAAGTGTCTAAAGAACAGTGCTGCTGTGGAGAGAGACCCTCTTAAGCCCCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS-3UTR CCA 90 bp | TTCTGGACAGTTTCCTTGTTCAACCACTCACAGACACCACCAGCTCCAGCTCTCGGCCTGTTCATAACCTaGGTGGGCGTTAGCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: FWTVSLFNHSQTPPAPALGLFIT*VGVSTL Trigger: CAAAGTGCTAACGCCCACCCAGGTTATGAACAGGCC...GAGAGCTGGAGCTGGTGGTGTCTGTGAGTGGTTGAACAAGGAAACTGTCCAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036951.13 |
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| CDS GCA 72 bp | ACAGCTCCGACTCCAGAGAACTGCTCTACTCCCCAGTaGCTCCTGCCTGTGCCACTGGGAGGCCCGGAGCCC | + |
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Preference number: 6 (lower is better) Translates to: TAPTPENCSTPQ*LLPVPLGGPEP Trigger: GGGCTCCGGGCCTCCCAGTGGCACAGGCAGGAGGCACTGGGGAGTAGAGCAGTTCTCTGGAGTCGGAGCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142428.2 |
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| CDS GCA 72 bp | TCTTCAAAACAGAGCACAGCTCCGACTCCAGAGAACTaGTCTACTCCCCAGTGCCTCCTGCCTGTGCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SSKQSTAPTPEN*STPQCLLPVPL Trigger: CAGTGGCACAGGCAGGAGGCACTGGGGAGTAGAGCAGTTCTCTGGAGTCGGAGCTGTGCTCTGTTTTGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142428.2 |
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