Pregenerated sensors for PDZK1IP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028716Ensembl transcript IDs: ENSMUST00000030488.3, ENSMUST00000106548.9, ENSMUST00000171877.8, ENSMUST00000177647.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGAGTCAGCTTGTTTCAGTAGATTCCTGTAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACT | + |
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Preference number: 1 (lower is better) Translates to: GSQLVSVDSCRAVAG*DGGDQLYVPCSLGT Trigger: AGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCCACCATCTCACCCAGCCACTGCTCTACAGGAATCTACTGAAACAAGCTGACTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR TCA 90 bp | GCTTGGTCTGAGTCCTGGCCTGAGATGACTGTGATTCTAGAGAGGTaGGGGAGTCAGCTTGTTTCAGTAGATTCCTGTAGAGCAGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: AWSESWPEMTVILER*GSQLVSVDSCRAVA Trigger: AGCCACTGCTCTACAGGAATCTACTGAAACAAGCTGACTCCCTCACCTCTCTAGAATCACAGTCATCTCAGGCCAGGACTCAGACCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR TCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTC | + |
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Preference number: 2 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVRAVAG*DGGDQL Trigger: GAGTTGATCCCCACCATCTCACCCAGCCACTGCTCT...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGCAGCACATGGTGTGCTaGGCTTGGTCTGAGTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: EELSHPSQGSSELGRRPRQHMVC*AWSESW Trigger: CCAGGACTCAGACCAAGCCCAGCACACCATGTGCTG...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTC | + |
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Preference number: 2 (lower is better) Translates to: PSQGSSELGRRPRKAQGHRAVAG*DGGDQL Trigger: GAGTTGATCCCCACCATCTCACCCAGCCACTGCTCT...GTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR TCA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTC | + |
|
Preference number: 2 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVRAVAG*DGGDQL Trigger: GAGTTGATCCCCACCATCTCACCCAGCCACTGCTCT...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCATTCCTGTAGAGCAGTaGCTGGGTGAGATGGTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVIPVEQ*LGEMVG Trigger: CCCCACCATCTCACCCAGCCACTGCTCTACAGGAAT...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTC | + |
|
Preference number: 2 (lower is better) Translates to: SSELGRRPRKAQGHSTWCRAVAG*DGGDQL Trigger: GAGTTGATCCCCACCATCTCACCCAGCCACTGCTCT...ACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | GAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGGGCTGGGTGAGATGGTaGGGATCAACTCTATGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: ELGRRPRKAQGHSTWCAGGWVRW*GSTLCS Trigger: GGAACATAGAGTTGATCCCCACCATCTCACCCAGCC...CCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGGGCTGGGTGAGATGGTaGGGATCAACTCTATGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVGWVRW*GSTLCS Trigger: GGAACATAGAGTTGATCCCCACCATCTCACCCAGCC...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | CCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACGGCTGGGTGAGATGGTaGGGATCAACTCTATGTTCC | + |
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Preference number: 2 (lower is better) Translates to: PSQGSSELGRRPRKAQGHGWVRW*GSTLCS Trigger: GGAACATAGAGTTGATCCCCACCATCTCACCCAGCC...GTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTATGGTGTGCTGGGCTTaGTCTGAGTCCTGGCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: HRNKSHFHSCRSKGRGGAMVCWA*SESWPE Trigger: CTCAGGCCAGGACTCAGACCAAGCCCAGCACACCAT...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR TCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTGTGATTCTAGAGAGGTaGGGGAGTCAGCTTGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: HRNKSHFHSCRSKGRGGAVILER*GSQLVS Trigger: TGAAACAAGCTGACTCCCTCACCTCTCTAGAATCAC...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGGCTGGGTGAGATGGTaGGGATCAACTCTATGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: LYFTEIRATSIVAGARGGGWVRW*GSTLCS Trigger: GGAACATAGAGTTGATCCCCACCATCTCACCCAGCC...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR CCA 72 bp | ACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTaGGCTTGGTCTGAGTCCTGGCCTGAGATGACTGTG | + |
|
Preference number: 3 (lower is better) Translates to: TQESPGSQHMVC*AWSESWPEMTV Trigger: CACAGTCATCTCAGGCCAGGACTCAGACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR GCA 72 bp | AAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTaGTGGGCTTGGTCTGAGTCCTGGCCTGAGATGACT | + |
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Preference number: 3 (lower is better) Translates to: KTQESPGSQHMV*WAWSESWPEMT Trigger: AGTCATCTCAGGCCAGGACTCAGACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR CCA 72 bp | GAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTaGTCTGAGTCCTGGCCTGAGATGACTGTGATTCTA | + |
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Preference number: 3 (lower is better) Translates to: ESPGSQHMVCWA*SESWPEMTVIL Trigger: TAGAATCACAGTCATCTCAGGCCAGGACTCAGACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| 3UTR TCA 72 bp | CTTGTTTCAGTAGATTCCTGTAGAGCAGTGGCTGGGTaGGATGGTGGGGATCAACTCTATGTTCCCTGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: LVSVDSCRAVAG*DGGDQLYVPCS Trigger: GCTACAGGGAACATAGAGTTGATCCCCACCATCTCACCCAGCCACTGCTCTACAGGAATCTACTGAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | GAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACG | + |
|
Preference number: 4 (lower is better) Translates to: ELGRRPRKAQGHSTWCAGGSGSS*HQKWLT Trigger: CGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCC...CCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACG | + |
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Preference number: 4 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVGSGSS*HQKWLT Trigger: CGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCC...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR GCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGTTGACAGCTGGCAGGTaGCACTTCCGCGAGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRLTAGR*HFREQT Trigger: GGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAA...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR GCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCTTGACAGCTGGCAGGTaGCACTTCCGCGAGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVLTAGR*HFREQT Trigger: GGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAA...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACG | + |
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Preference number: 4 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVGSGSS*HQKWLT Trigger: CGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCC...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGACACAGCGACAGCAATaGGGCCTTGCATCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ELGRRPRKAQGHSTWCAGTQRQQ*GLASRA Trigger: AGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGT...CCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGACACAGCGACAGCAATaGGGCCTTGCATCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRTQRQQ*GLASRA Trigger: AGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGT...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGGGACTGGCAGACTGGTaGAGAGAAACTGCCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRGLADW*RETALL Trigger: GAGGAGGGCAGTTTCTCTTCACCAGTCTGCCAGTCC...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
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| CDS-3UTR CCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCGACCTTGTTGACAGCTaGCAGGTGCCACTTCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVDLVDS*QVPLPR Trigger: TCGCGGAAGTGGCACCTGCCAGCTGTCAACAAGGTC...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGGGCACCAGAAGTGGTTaGCGGCGAAGACGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRGTRSG*RRRRLQ Trigger: TTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCC...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGGGCACCAGAAGTGGTTaGCGGCGAAGACGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ELGRRPRKAQGHSTWCAGGTRSG*RRRRLQ Trigger: TTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCC...CCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGCACTGCTGGTGTTTTTaGCTCCTGGAGCTGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRHCWCF*LLELLE Trigger: CTCCAGCAGCTCCAGGAGTCAAAAACACCAGCAGTG...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
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| CDS-3UTR GCA 90 bp | TCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTTTGACAGCTGGCAGGTaGCACTTCCGCGAGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: SSELGRRPRKAQGHSTWCLTAGR*HFREQT Trigger: GGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAA...ACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACG | + |
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Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGAGSGSS*HQKWLT Trigger: CGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCC...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | GAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGGACTCCTGGAGCTGCTaGAGGTCTGGGGTGTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ELGRRPRKAQGHSTWCAGDSWSC*RSGVFV Trigger: TACAAACACCCCAGACCTCCAGCAGCTCCAGGAGTC...CCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGTTTCCTAGACCTTGTTaGCAGCTGGCAGGTGCCACT | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRFPRPC*QLAGAT Trigger: AGTGGCACCTGCCAGCTGTCAACAAGGTCTAGGAAA...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCTTTCCTAGACCTTGTTaGCAGCTGGCAGGTGCCACT | + |
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Preference number: 4 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVFPRPC*QLAGAT Trigger: AGTGGCACCTGCCAGCTGTCAACAAGGTCTAGGAAA...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGCCTTGCATCCAGGGCTaGAGGTTTCCTAGACCTTGT | + |
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Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRPCIQG*RFPRPC Trigger: ACAAGGTCTAGGAAACCTTCAGCCCTGGATGCAAGG...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | GGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACTAGGGCCACAGAGAAGCTTACACAGCGACAGCAATaGGGCCTTGCATCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GDQLYVPCSLGTRATEKLTQRQQ*GLASRA Trigger: AGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGT...AAGCTTCTCTGTGGCCCTAGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR TCA 90 bp | CCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACGGCACCAGAAGTGGTTaGCGGCGAAGACGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: PSQGSSELGRRPRKAQGHGTRSG*RRRRLQ Trigger: TTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCC...GTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR GCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTTTGACAGCTGGCAGGTaGCACTTCCGCGAGCAGACC | + |
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Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGALTAGR*HFREQT Trigger: GGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAA...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | TCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGACCTTGTTGACAGCTaGCAGGTGCCACTTCCGCGA | + |
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Preference number: 4 (lower is better) Translates to: SSELGRRPRKAQGHSTWCDLVDS*QVPLPR Trigger: TCGCGGAAGTGGCACCTGCCAGCTGTCAACAAGGTC...ACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CCA 90 bp | GGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACTAGGGCCACAGAGAAGCTTGACCTTGTTGACAGCTaGCAGGTGCCACTTCCGCGA | + |
|
Preference number: 4 (lower is better) Translates to: GDQLYVPCSLGTRATEKLDLVDS*QVPLPR Trigger: TCGCGGAAGTGGCACCTGCCAGCTGTCAACAAGGTC...AAGCTTCTCTGTGGCCCTAGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTACACAGCGACAGCAATaGGGCCTTGCATCCAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGATQRQQ*GLASRA Trigger: AGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGT...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCCTGCCTTGTTTCCAATaGTCATCACTGTGCTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVLPCFQ*SSLCSQ Trigger: CTGGGAGCACAGTGATGATCATTGGAAACAAGGCAG...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CCA 90 bp | CCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACTCCTGGCACCAGAAGTaGTTGACGGCGAAGACGATT | + |
|
Preference number: 4 (lower is better) Translates to: PSQGSSELGRRPRKAQGHSWHQK*LTAKTI Trigger: AATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGA...GTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CCA 90 bp | TCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGGTGTTTTTGACTCCTaGAGCTGCTGGAGGTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SSELGRRPRKAQGHSTWCGVFDS*SCWRSG Trigger: CCCAGACCTCCAGCAGCTCCAGGAGTCAAAAACACC...ACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
||
| CDS-3UTR GCA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCCATTGAGGAGTATCTaGCATCCATTCCCACCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVPLRSI*HPFPPG Trigger: TCCTGGTGGGAATGGATGGCAGATACTCCTCAATGG...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CCA 90 bp | TCCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTTCCTGGCACCAGAAGTaGTTGACGGCGAAGACGATT | + |
|
Preference number: 4 (lower is better) Translates to: SSELGRRPRKAQGHSTWCSWHQK*LTAKTI Trigger: AATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGA...ACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTTTTCCTAGACCTTGTTaGCAGCTGGCAGGTGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGAFPRPC*QLAGAT Trigger: AGTGGCACCTGCCAGCTGTCAACAAGGTCTAGGAAA...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | GGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACTAGGGCCACAGAGAAGCTTCTGCCTTGTTTCCAATaGTCATCACTGTGCTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GDQLYVPCSLGTRATEKLLPCFQ*SSLCSQ Trigger: CTGGGAGCACAGTGATGATCATTGGAAACAAGGCAG...AAGCTTCTCTGTGGCCCTAGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGAAAACCAGATGCCATTaGGGAGTATCTGCCATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: EELSHPSQGSSELGRRPRKTRCH*GVSAIH Trigger: ATGGATGGCAGATACTCCTCAATGGCATCTGGTTTT...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR GCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTTTTGACTCCTGGAGCTaGTGGAGGTCTGGGGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGAFDSWS*WRSGVF Trigger: AAACACCCCAGACCTCCAGCAGCTCCAGGAGTCAAA...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
||
| CDS-3UTR TCA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTCTGCCTTGTTTCCAATaGTCATCACTGTGCTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: HRNKSHFHSCRSKGRGGALPCFQ*SSLCSQ Trigger: CTGGGAGCACAGTGATGATCATTGGAAACAAGGCAG...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CCA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGTGGGTAAGGCAGAAGTaGAAAGAGGGCGGGGAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LYFTEIRATSIVAGARGGWVRQK*KEGGEE Trigger: TTCCTCCCCGCCCTCTTTCCACTTCTGCCTTACCCA...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
||
| CDS-3UTR TCA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGTTTCCTAGACCTTGTTaGCAGCTGGCAGGTGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: LYFTEIRATSIVAGARGGFPRPC*QLAGAT Trigger: AGTGGCACCTGCCAGCTGTCAACAAGGTCTAGGAAA...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGCTGCCTTGTTTCCAATaGTCATCACTGTGCTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LYFTEIRATSIVAGARGGLPCFQ*SSLCSQ Trigger: CTGGGAGCACAGTGATGATCATTGGAAACAAGGCAG...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGAAAACCAGATGCCATTaGGGAGTATCTGCCATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LYFTEIRATSIVAGARGGKTRCH*GVSAIH Trigger: ATGGATGGCAGATACTCCTCAATGGCATCTGGTTTT...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR TCA 90 bp | GATGACTGTGATTCTAGAGAGGTGAGGGAGTCAGCTTGTTTCAGTAGATTCCTGAAAACCAGATGCCATTaGGGAGTATCTGCCATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: DDCDSREVRESACFSRFLKTRCH*GVSAIH Trigger: ATGGATGGCAGATACTCCTCAATGGCATCTGGTTTT...CAGGAATCTACTGAAACAAGCTGACTCCCTCACCTCTCTAGAATCACAGTCATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS TCA 90 bp | TCACTGTGCTCCCAGGCTCCGGCTCCTCCTGGCACCAGAAGTGGTTaGCGGCGAAGACGATTGCAACAAGGACCAAGAACACAGCGACAG | + |
|
Preference number: 5 (lower is better) Translates to: SLCSQAPAPPGTRSG*RRRRLQQGPRTQRQ Trigger: CTGTCGCTGTGTTCTTGGTCCTTGTTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS CCA 90 bp | ATCATCACTGTGCTCCCAGGCTCCGGCTCCTCCTGGCACCAGAAGTaGTTGACGGCGAAGACGATTGCAACAAGGACCAAGAACACAGCG | + |
|
Preference number: 5 (lower is better) Translates to: IITVLPGSGSSWHQK*LTAKTIATRTKNTA Trigger: CGCTGTGTTCTTGGTCCTTGTTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGATGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCTGGCACCAGAAGTGGTaGACGGCGAAGACGATTGCA | + |
|
Preference number: 5 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVWHQKW*TAKTIA Trigger: TGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCA...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | GAGGAGCTGAGCCACCCTTCACAAGGCTCCTCAGAACTGGGTAGAAGACCCAGGCCACTGCTGGTGTTTTaGACTCCTGGAGCTGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: EELSHPSQGSSELGRRPRPLLVF*TPGAAG Trigger: TCCAGCAGCTCCAGGAGTCAAAAACACCAGCAGTGG...CCTGGGTCTTCTACCCAGTTCTGAGGAGCCTTGTGAAGGGTGGCTCAGCTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
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| CDS GCA 90 bp | CTCCGGCTCCTCCTGGCACCAGAAGTGGTTGACGGCGAAGACGATTaGAACAAGGACCAAGAACACAGCGACAGCAATGAGGCCTTGCAT | + |
|
Preference number: 5 (lower is better) Translates to: LRLLLAPEVVDGEDD*NKDQEHSDSNEALH Trigger: ATGCAAGGCCTCATTGCTGTCGCTGTGTTCTTGGTCCTTGTTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGGACAGCAATGAGGCCTaGCATCCAGGGCTGAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVDSNEA*HPGLKV Trigger: AACCTTCAGCCCTGGATGCAAGGCCTCATTGCTGTC...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | CCTCAGAACTGGGTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGTGGCACCAGAAGTGGTaGACGGCGAAGACGATTGCA | + |
|
Preference number: 5 (lower is better) Translates to: PQNWVEDPGKPRVTAHGVWHQKW*TAKTIA Trigger: TGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCA...CACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTACCCAGTTCTGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS CCA 90 bp | TTGTTTCCAATGATCATCACTGTGCTCCCAGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACGGCGAAGACGATTGCAACAAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: LFPMIITVLPGSGSS*HQKWLTAKTIATRT Trigger: GGTCCTTGTTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGATGATCATTGGAAACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | GGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACTAGGGCCACAGAGAAGCTTGACAGCAATGAGGCCTaGCATCCAGGGCTGAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: GDQLYVPCSLGTRATEKLDSNEA*HPGLKV Trigger: AACCTTCAGCCCTGGATGCAAGGCCTCATTGCTGTC...AAGCTTCTCTGTGGCCCTAGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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| CDS-3UTR CAA 90 bp | GTAGAAGACCCAGGAAAGCCCAGGGTCACAGCACATGGTGTGCTGGGCTTGGTCAGGACCCCATCTGCCTaGTTTCCAATGATCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: VEDPGKPRVTAHGVLGLVRTPSA*FPMIIT Trigger: AGTGATGATCATTGGAAACAAGGCAGATGGGGTCCT...GACCAAGCCCAGCACACCATGTGCTGTGACCCTGGGCTTTCCTGGGTCTTCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS TCA 90 bp | CGGCGAAGACGATTGCAACAAGGACCAAGAACACAGCGACAGCAATaGGGCCTTGCATCCAGGGCTGAAGGTTTCCTAGACCTTGTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: RRRRLQQGPRTQRQQ*GLASRAEGFLDLVD Trigger: GTCAACAAGGTCTAGGAAACCTTCAGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGTTCTTGGTCCTTGTTGCAATCGTCTTCGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS TCA 90 bp | CTCGTAGGCATTCTTGTGCTCGCTGGACCTAAAACCAGATGCCATTaGGGAGTATCTGCCATCCATTCCCACCAGGACCCCATCTGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: LVGILVLAGPKTRCH*GVSAIHSHQDPICL Trigger: AAGGCAGATGGGGTCCTGGTGGGAATGGATGGCAGATACTCCTCAATGGCATCTGGTTTTAGGTCCAGCGAGCACAAGAATGCCTACGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | GGGGATCAACTCTATGTTCCCTGTAGCCTGGGGACTAGGGCCACAGAGAAGCTTAGGACCCCATCTGCCTaGTTTCCAATGATCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: GDQLYVPCSLGTRATEKLRTPSA*FPMIIT Trigger: AGTGATGATCATTGGAAACAAGGCAGATGGGGTCCT...AAGCTTCTCTGTGGCCCTAGTCCCCAGGCTACAGGGAACATAGAGTTGATCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | CACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGAGGAGCTAGGACCCCATCTGCCTaGTTTCCAATGATCATCACT | + |
|
Preference number: 5 (lower is better) Translates to: HRNKSHFHSCRSKGRGGARTPSA*FPMIIT Trigger: AGTGATGATCATTGGAAACAAGGCAGATGGGGTCCT...AGCTCCTCCCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS-3UTR CAA 90 bp | CTTTATTTCACAGAAATAAGAGCCACTTCCATAGTTGCAGGAGCAAGGGGAGGGGACAGCAATGAGGCCTaGCATCCAGGGCTGAAGGTT | + |
|
Preference number: 5 (lower is better) Translates to: LYFTEIRATSIVAGARGGDSNEA*HPGLKV Trigger: AACCTTCAGCCCTGGATGCAAGGCCTCATTGCTGTC...CCCTCCCCTTGCTCCTGCAACTATGGAAGTGGCTCTTATTTCTGTGAAATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS CCA 72 bp | TCCAGGGCTGAAGGTTTCCTAGACCTTGTTGACAGCTaGCAGGTGCCACTTCCGCGAGCAGACCCAGCACGA | + |
|
Preference number: 6 (lower is better) Translates to: SRAEGFLDLVDS*QVPLPRADPAR Trigger: TCGTGCTGGGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAACAAGGTCTAGGAAACCTTCAGCCCTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS CAA 90 bp | ATCACTGTGCTCCCAGGCTCCGGCTCCTCCTGGCACCAGAAGTGGTaGACGGCGAAGACGATTGCAACAAGGACCAAGAACACAGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: ITVLPGSGSSWHQKW*TAKTIATRTKNTAT Trigger: TGTCGCTGTGTTCTTGGTCCTTGTTGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS CCA 72 bp | ATGATCATCACTGTGCTCCCAGGCTCCGGCTCCTCCTaGCACCAGAAGTGGTTGACGGCGAAGACGATTGCA | + |
|
Preference number: 6 (lower is better) Translates to: MIITVLPGSGSS*HQKWLTAKTIA Trigger: TGCAATCGTCTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGATGATCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS CAA 90 bp | ATTGAGGAGTATCTGCCATCCATTCCCACCAGGACCCCATCTGCCTaGTTTCCAATGATCATCACTGTGCTCCCAGGCTCCGGCTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: IEEYLPSIPTRTPSA*FPMIITVLPGSGSS Trigger: GGAGGAGCCGGAGCCTGGGAGCACAGTGATGATCATTGGAAACAAGGCAGATGGGGTCCTGGTGGGAATGGATGGCAGATACTCCTCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS TCA 72 bp | GACTCCTGGAGCTGCTGGAGGTCTGGGGTGTTTGTATaGGATCAGCTGGAGAGCAGTCTGACTCTAAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: DSWSCWRSGVFV*DQLESSLTLKE Trigger: CTCCTTTAGAGTCAGACTGCTCTCCAGCTGATCTCATACAAACACCCCAGACCTCCAGCAGCTCCAGGAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171877.8 |
||
| CDS GCA 72 bp | GGAGTATCTGCCATCCATTCCCACCAGGACCCCATCTaGCTTGTTTCCAATGATCATCACTGTGCTCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: GVSAIHSHQDPI*LVSNDHHCAPR Trigger: CCTGGGAGCACAGTGATGATCATTGGAAACAAGGCAGATGGGGTCCTGGTGGGAATGGATGGCAGATACTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
||
| CDS TCA 72 bp | ATTCTTGTGCTCGCTGGACCTAAAACCAGATGCCATTaGGGAGTATCTGCCATCCATTCCCACCAGGACCCC | + |
|
Preference number: 6 (lower is better) Translates to: ILVLAGPKTRCH*GVSAIHSHQDP Trigger: GGGGTCCTGGTGGGAATGGATGGCAGATACTCCTCAATGGCATCTGGTTTTAGGTCCAGCGAGCACAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000030488.3 ENSMUST00000106548.9 ENSMUST00000171877.8 ENSMUST00000177647.8 |
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