Pregenerated sensors for PDZD9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030887Ensembl transcript IDs: ENSMUST00000033178.4, ENSMUST00000127845.2, ENSMUST00000208635.2
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAGAATTGGCAGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTTaGTCCACCATTGCCCAGTATGGAGAAGGGGCCCTCAGTTCCTTC | + |
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Preference number: 1 (lower is better) Translates to: EELAVEEDEEEMALS*STIAQYGEGALSSF Trigger: GAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACTGCCAATTCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR GCA 90 bp | AGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATTaGCCAGTATGGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTT | + |
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Preference number: 1 (lower is better) Translates to: SGGGRGGDGSVLLHH*PVWRRGPQFLLVIL Trigger: AAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CCA 90 bp | CCTGTGCATAATCCTCCAGCCAGAAGGCATCTGAGGAGGAAGAATTaGCAGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTTGCTCCA | + |
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Preference number: 1 (lower is better) Translates to: PVHNPPARRHLRRKN*QWRRTRRRWLCLAP Trigger: TGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACTGCCAATTCTTCCTCCTCAGATGCCTTCTGGCTGGAGGATTATGCACAGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CCA 90 bp | GGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATTGCCCAGTATaGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTTGTGAATGAC | + |
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Preference number: 1 (lower is better) Translates to: GRGGDGSVLLHHCPV*RRGPQFLLVILVND Trigger: GTCATTCACAAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 90 bp | GCCCAGTATGGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTTGTaGATGACTACATCCGAGTTAATGTCTCTGCCAACACTAATAGTG | + |
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Preference number: 1 (lower is better) Translates to: AQYGEGALSSFLSSL*MTTSELMSLPTLIV Trigger: CACTATTAGTGTTGGCAGAGACATTAACTCGGATGTAGTCATTCACAAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 90 bp | AAGTTCTATGGCCACAGATTTGCAAACCAATACCTAACCAAACTTTaGTACCTGTTTACCATTGCCCTCCTCAACCTGTGCATAATCCTC | + |
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Preference number: 1 (lower is better) Translates to: KFYGHRFANQYLTKL*YLFTIALLNLCIIL Trigger: GAGGATTATGCACAGGTTGAGGAGGGCAATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCATAGAACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CAA 90 bp | CAGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATaGCCCAGTATGGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCT | + |
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Preference number: 2 (lower is better) Translates to: QWRRTRRRWLCLAPP*PSMEKGPSVPSCHP Trigger: AGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CAA 90 bp | GGAAGAATTGGCAGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTaGCTCCACCATTGCCCAGTATGGAGAAGGGGCCCTCAGTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: GRIGSGGGRGGDGSV*LHHCPVWRRGPQFL Trigger: AAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACTGCCAATTCTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR TCA 90 bp | CCTCCTCAACCTGTGCATAATCCTCCAGCCAGAAGGCATCTGAGGAGGAAGAATAGTGATGCTGGGCTCTaGGAACAGGTCTGCAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: PPQPVHNPPARRHLRRKNSDAGL*EQVCRA Trigger: GGCTCTGCAGACCTGTTCTCAGAGCCCAGCATCACT...ATTCTTCCTCCTCAGATGCCTTCTGGCTGGAGGATTATGCACAGGTTGAGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGTGCAGAGCCTGCCTGTaGGACCACAGCAAGTCCCGA | + |
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Preference number: 2 (lower is better) Translates to: FLACFSPDIPSKSITERVCRACL*DHSKSR Trigger: TCGGGACTTGCTGTGGTCTCACAGGCAGGCTCTGCA...CACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR TCA 90 bp | GAGGAGGAGATGGCTCTGTCTTGCTCCACCATTGCCCAGTATGGAGAAGGGGCCTTCTTGTCATCCTTGTaGATGACTACATCCGAGTTA | + |
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Preference number: 2 (lower is better) Translates to: EEEMALSCSTIAQYGEGAFLSSL*MTTSEL Trigger: TAACTCGGATGTAGTCATTCACAAGGATGACAAGAA...GGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTTCATACCCGTGCCATTCTGTGGAGATGGAGATCGGTGTCCTTACGGGGTGTGGTGTGTGTGGGATTaGAAATTTGGTCTCGGGGAT | + |
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Preference number: 2 (lower is better) Translates to: LFIPVPFCGDGDRCPYGVWCVWD*KFGLGD Trigger: ATCCCCGAGACCAAATTTCCAATCCCACACACACCA...CACCCCGTAAGGACACCGATCTCCATCTCCACAGAATGGCACGGGTATGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAGTCTTGCTCCACCATTaGCCAGTATGGAGAAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQVLLHH*PVWRRG Trigger: GCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGAC...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAGCCCTCCTCAACCTGTaGATAATCCTCCAGCCAGAA | + |
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Preference number: 2 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQALLNL*IILQPE Trigger: TTCTGGCTGGAGGATTATGCACAGGTTGAGGAGGGC...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGATGCTGTTCAGCCATTCTGATGATTaGGCAGGTTCCTCTAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: GVLIWRPSVCLVAHVMLFSHSDD*AGSSSD Trigger: GTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT...GAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR-3UTR CCA 90 bp | CTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGGGAGCCATTCTGATGATTaGGCAGGTTCCTCTAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: LACFSPDIPSKSITERVGSHSDD*AGSSSD Trigger: GTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT...CCCCACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTTCTATGGCCACAGATTTGCAAACCAATACCTAACCAAACTTTGATACCTTGCAGAGCCTGCCTGTaGGACCACAGCAAGTCCCGA | + |
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Preference number: 2 (lower is better) Translates to: KVLWPQICKPIPNQTLIPCRACL*DHSKSR Trigger: TCGGGACTTGCTGTGGTCTCACAGGCAGGCTCTGCA...AGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCATAGAACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CAA 90 bp | TATCTAAAACCGCCTCTTCATGGTCATCCTTTACAAGAGACTCTCTaGCCGGCTCCGTTTTCTTTGGTGTGTGTGGGATTGGAAATTTGG | + |
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Preference number: 2 (lower is better) Translates to: YLKPPLHGHPLQETL*PAPFSLVCVGLEIW Trigger: CCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGAGAGTCTCTTGTAAAGGATGACCATGAAGAGGCGGTTTTAGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
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| 3UTR CAA 90 bp | CTCAGCTGGTTCCTTCATTTGTGTCTGACTCCTTCTGTCTCTTCCTaGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGA | + |
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Preference number: 2 (lower is better) Translates to: LSWFLHLCLTPSVSS*LVSVLTFPVKVSLR Trigger: TCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAAGAGACAGAAGGAGTCAGACACAAATGAAGGAACCAGCTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR GCA 90 bp | ACGAGTTATAACACATGCGTGTATTTAAAGCTCAGCCCAGACCAGCAAGCACATGAACAGCCTGGATTTTaGCCCATGTACAGTAAACCT | + |
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Preference number: 2 (lower is better) Translates to: TSYNTCVYLKLSPDQQAHEQPGF*PMYSKP Trigger: AGGTTTACTGTACATGGGGCAAAATCCAGGCTGTTC...ATGTGCTTGCTGGTCTGGGCTGAGCTTTAAATACACGCATGTGTTATAACTCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR-3UTR GCA 90 bp | TTCCTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGAACAGCCTGGATTTTaGCCCATGTACAGTAAACCT | + |
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Preference number: 2 (lower is better) Translates to: FLACFSPDIPSKSITERVEQPGF*PMYSKP Trigger: AGGTTTACTGTACATGGGGCAAAATCCAGGCTGTTC...CACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR GCA 90 bp | AATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGACGAGTTATAACACATaGGTGTATTTAAAGCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: NGSGVLIWRPSVCLVAHVTSYNT*VYLKLS Trigger: GCTGAGCTTTAAATACACGCATGTGTTATAACTCGT...CACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR-3UTR CCA 90 bp | ACATCCGAGTTAATGTCTCTGCCAACACTAATAGTGCGCTCCTTCTTTTCATACCGGCTCCGTTTTCTTTaGTGTGTGTGGGATTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: TSELMSLPTLIVRSFFSYRLRFL*CVWDWK Trigger: TTTCCAATCCCACACACACCAAAGAAAACGGAGCCG...GTATGAAAAGAAGGAGCGCACTATTAGTGTTGGCAGAGACATTAACTCGGATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
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| 3UTR-3UTR CCA 90 bp | CGTGTAGGAAATCTACAAATCAACACCATGGTAAGGCATAAAAATGGGATGTTTCTGAGGAGGAAGAATTaGCAGTGGAGGAGGACGAGG | + |
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Preference number: 2 (lower is better) Translates to: RVGNLQINTMVRHKNGMFLRRKN*QWRRTR Trigger: CCTCGTCCTCCTCCACTGCCAATTCTTCCTCCTCAG...AAACATCCCATTTTTATGCCTTACCATGGTGTTGATTTGTAGATTTCCTACACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTCTATGGCCACAGATTTGCAAACCAATACCTAACCAAACTTTGATACCTGAGATGGCTCTGTCTTaGTCCACCATTGCCCAGTAT | + |
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Preference number: 2 (lower is better) Translates to: KVLWPQICKPIPNQTLIPEMALS*STIAQY Trigger: ATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTC...AGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCATAGAACTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCACAGATTTGCAAACCAATACCTAACCAAACTTTGATACCTGTTTACCATAGCCATTCTGATGATTaGGCAGGTTCCTCTAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: WPQICKPIPNQTLIPVYHSHSDD*AGSSSD Trigger: GTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT...ATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CAA 90 bp | AAAGTTCTATGGCCACAGATTTGCAAACCAATACCTAACCAAACTTaGATACCTGTTTACCATTGCCCTCCTCAACCTGTGCATAATCCT | + |
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Preference number: 2 (lower is better) Translates to: KVLWPQICKPIPNQT*IPVYHCPPQPVHNP Trigger: AGGATTATGCACAGGTTGAGGAGGGCAATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCATAGAACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR GCA 90 bp | CCACAGATTTGCAAACCAATACCTAACCAAACTTTGATACCTGTTTACCATTGCTTCTTTTCATACCCGTaGCATTCTGTGGAGATGGAG | + |
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Preference number: 2 (lower is better) Translates to: PQICKPIPNQTLIPVYHCFFSYP*HSVEME Trigger: CTCCATCTCCACAGAATGGCACGGGTATGAAAAGAA...GCAATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CAA 90 bp | CTTAAAAGCATAGTGACTCCCAGCTGTCCTAGTGTCAATAAAGCATaGTGTGTAAATGTTCTTCTTGCATTCTTTCTAAGCAGTCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: LKSIVTPSCPSVNKA*CVNVLLAFFLSSQQ Trigger: TTGCTGACTGCTTAGAAAGAATGCAAGAAGAACATTTACACACAATGCTTTATTGACACTAGGACAGCTGGGAGTCACTATGCTTTTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR-3UTR CCA 90 bp | CGTGTAGGAAATCTACAAATCAACACCATGGTAAGGCATAAAAATGGGATGTTTTTTCTTTGGTGTGTGTaGGATTGGAAATTTGGTCTC | + |
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Preference number: 2 (lower is better) Translates to: RVGNLQINTMVRHKNGMFFLWCV*DWKFGL Trigger: GAGACCAAATTTCCAATCCCACACACACCAAAGAAA...AAACATCCCATTTTTATGCCTTACCATGGTGTTGATTTGTAGATTTCCTACACG 38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
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| 3UTR GCA 72 bp | GGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATTaGCCAGTATGGAGAAGGGGCCCTCAGTTCCTTCTT | + |
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Preference number: 3 (lower is better) Translates to: GRGGDGSVLLHH*PVWRRGPQFLL Trigger: AAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 72 bp | CTCAACCTGTGCATAATCCTCCAGCCAGAAGGCATCTaGGGAGGAAGAATTGGCAGTGGAGGAGGACGAGGA | + |
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Preference number: 3 (lower is better) Translates to: LNLCIILQPEGI*GGRIGSGGGRG Trigger: TCCTCGTCCTCCTCCACTGCCAATTCTTCCTCCTCAGATGCCTTCTGGCTGGAGGATTATGCACAGGTTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR CCA 72 bp | GGAGATGGCTCTGTCTTGCTCCACCATTGCCCAGTATaGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTT | + |
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Preference number: 3 (lower is better) Translates to: GDGSVLLHHCPV*RRGPQFLLVIL Trigger: AAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 72 bp | AAAGTGCAGCCTACCAGTGGCCATTCTTCCTGGTTTTaGATGGCAGCGGGGTTCTCATCTGGAGACCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: KVQPTSGHSSWF*MAAGFSSGDLL Trigger: CAGAAGGTCTCCAGATGAGAACCCCGCTGCCATTCAAAACCAGGAAGAATGGCCACTGGTAGGCTGCACTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR CCA 72 bp | TGCAGCCTACCAGTGGCCATTCTTCCTGGTTTTGAATaGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: CSLPVAILPGFE*QRGSHLETFCL Trigger: CAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATTCAAAACCAGGAAGAATGGCCACTGGTAGGCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR CCA 72 bp | GCTCCTTCTTTTCATACCCGTGCCATTCTGTGGAGATaGAGATCGGTGTCCTTACGGGGTGATTCCAGACTG | + |
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Preference number: 3 (lower is better) Translates to: APSFHTRAILWR*RSVSLRGDSRL Trigger: CAGTCTGGAATCACCCCGTAAGGACACCGATCTCCATCTCCACAGAATGGCACGGGTATGAAAAGAAGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGGGGGAGATGGCTCTGTCTaGCTCCACCATTGCCCAGTA | + |
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Preference number: 3 (lower is better) Translates to: LACFSPDIPSKSITERVGGDGSV*LHHCPV Trigger: TACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCC...CCCCACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAG 51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR GCA 72 bp | CCAACACTAATAGTGCGCTCCTTCTTTTCATACCCGTaGCATTCTGTGGAGATGGAGATCGGTGTCCTTACG | + |
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Preference number: 3 (lower is better) Translates to: PTLIVRSFFSYP*HSVEMEIGVLT Trigger: CGTAAGGACACCGATCTCCATCTCCACAGAATGGCACGGGTATGAAAAGAAGGAGCGCACTATTAGTGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 72 bp | GATGGAGATCGGTGTCCTTACGGGGTGATTCCAGACTaGCCGAGGGTACCTGTAATACTTGAGCTTTTTATC | + |
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Preference number: 3 (lower is better) Translates to: DGDRCPYGVIPD*PRVPVILELFI Trigger: GATAAAAAGCTCAAGTATTACAGGTACCCTCGGTCAGTCTGGAATCACCCCGTAAGGACACCGATCTCCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR TCA 72 bp | GGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTTGTaGATGACTACATCCGAGTTAATGTCTCTGCCAACA | + |
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Preference number: 3 (lower is better) Translates to: GEGALSSFLSSL*MTTSELMSLPT Trigger: TGTTGGCAGAGACATTAACTCGGATGTAGTCATTCACAAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CAA 90 bp | ACCTGCGTTTCTGAAGAACATCCTCTCAGCTGGTTCCTTCATTTGTGTCTGACTCCTTCTGTCTCTTCCTaGCTTGTTTCAGTCCTGACA | + |
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Preference number: 3 (lower is better) Translates to: TCVSEEHPLSWFLHLCLTPSVSS*LVSVLT Trigger: TGTCAGGACTGAAACAAGCAAGGAAGAGACAGAAGG...AGTCAGACACAAATGAAGGAACCAGCTGAGAGGATGTTCTTCAGAAACGCAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAGATACCTGTTTACCATaGCCCTCCTCAACCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQDTCLP*PSSTCA Trigger: TGCACAGGTTGAGGAGGGCAATGGTAAACAGGTATC...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| 3UTR GCA 72 bp | TGGGACATACGCCTTTTCTCGACGAGTTATAACACATaGGTGTATTTAAAGCTCAGCCCAGACCAGCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: WDIRLFSTSYNT*VYLKLSPDQQA Trigger: TGCTTGCTGGTCTGGGCTGAGCTTTAAATACACGCATGTGTTATAACTCGTCGAGAAAAGGCGTATGTCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR GCA 72 bp | AATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTaGTTAGTTGCACATGTGATGCTGTTCACATTCAGA | + |
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Preference number: 3 (lower is better) Translates to: NGSGVLIWRPSV*LVAHVMLFTFR Trigger: TCTGAATGTGAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR CCA 72 bp | TTCTTCCTGGTTTTGAATGGCAGCGGGGTTCTCATCTaGAGACCTTCTGTTTGCTTAGTTGCACATGTGATG | + |
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Preference number: 3 (lower is better) Translates to: FFLVLNGSGVLI*RPSVCLVAHVM Trigger: CATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATTCAAAACCAGGAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| 3UTR-3UTR CAA 90 bp | ATGTTCAGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTTTGGTGTGTGTGGGATaGGAAATTTGGTCTCGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: MFSHSDDWAGSSSDTVKSLVCVG*EIWSRG Trigger: TCCCCGAGACCAAATTTCCAATCCCACACACACCAA...AGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCTGAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
||
| 3UTR TCA 72 bp | GGCCACAGATTTGCAAACCAATACCTAACCAAACTTTaGTACCTGTTTACCATTGCCCTCCTCAACCTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: GHRFANQYLTKL*YLFTIALLNLC Trigger: GCACAGGTTGAGGAGGGCAATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| 3UTR TCA 72 bp | GGTGATTCCAGACTGACCGAGGGTACCTGTAATACTTaGGCTTTTTATCTAAAACCGCCTCTTCATGGTCAT | + |
|
Preference number: 3 (lower is better) Translates to: GDSRLTEGTCNT*AFYLKPPLHGH Trigger: ATGACCATGAAGAGGCGGTTTTAGATAAAAAGCTCAAGTATTACAGGTACCCTCGGTCAGTCTGGAATCACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| 3UTR CCA 72 bp | TACCTTACAAGACAAATGTTCAGCCATTCTGATGATTaGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: YLTRQMFSHSDD*AGSSSDTVKSE Trigger: CTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCTGAACATTTGTCTTGTAAGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| 3UTR GCA 72 bp | ATAAAAACAACTTTAACACTTGAACAGCCTGGATTTTaGCCCATGTACAGTAAACCTGCGTTTCTGAAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: IKTTLTLEQPGF*PMYSKPAFLKN Trigger: GTTCTTCAGAAACGCAGGTTTACTGTACATGGGGCAAAATCCAGGCTGTTCAAGTGTTAAAGTTGTTTTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 |
||
| 3UTR CCA 72 bp | ACATTCAGAGTAAACACCGACTATCTCACAGTTAATTaGCTCATGAGGCTGTATTACAGAATTGCTGTCTTA | + |
|
Preference number: 3 (lower is better) Translates to: TFRVNTDYLTVN*LMRLYYRIAVL Trigger: TAAGACAGCAATTCTGTAATACAGCCTCATGAGCCAATTAACTGTGAGATAGTCGGTGTTTACTCTGAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| 3UTR CAA 72 bp | AGGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATaGCCCAGTATGGAGAAGGGGCCCTCAGTTCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RTRRRWLCLAPP*PSMEKGPSVPS Trigger: AGAAGGAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR GCA 90 bp | AATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGGCCCTCCTCAACCTGTaGATAATCCTCCAGCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: NGSGVLIWRPSVCLVAHVALLNL*IILQPE Trigger: TTCTGGCTGGAGGATTATGCACAGGTTGAGGAGGGC...CACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | AATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGAGGAAGAATTGGCAGTaGAGGAGGACGAGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: NGSGVLIWRPSVCLVAHVRKNWQ*RRTRRR Trigger: TCTCCTCCTCGTCCTCCTCCACTGCCAATTCTTCCT...CACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | CTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGGGCTGAGGAGGAAGAATTaGCAGTGGAGGAGGACGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LACFSPDIPSKSITERVGLRRKN*QWRRTR Trigger: CCTCGTCCTCCTCCACTGCCAATTCTTCCTCCTCAG...CCCCACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| 3UTR CAA 72 bp | CCGCCTCTTCATGGTCATCCTTTACAAGAGACTCTCTaGCCGGCTCCGTTTTCTTTGGTGTGTGTGGGATTG | + |
|
Preference number: 4 (lower is better) Translates to: PPLHGHPLQETL*PAPFSLVCVGL Trigger: CAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGAGAGTCTCTTGTAAAGGATGACCATGAAGAGGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
||
| 3UTR CAA 72 bp | CCTTTACAAGAGACTCTCTTGCCGGCTCCGTTTTCTTaGGTGTGTGTGGGATTGGAAATTTGGTCTCGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PLQETLLPAPFS*VCVGLEIWSRG Trigger: TCCCCGAGACCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGAGAGTCTCTTGTAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
||
| CDS-3UTR TCA 90 bp | GCGCTCCTTCTTTTCATACCCGTGCCATTCTGTGGAGATGGAGATCGGTGTCCTACAGTGAGTTTGGTCTaGATCACTTTGTTCAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ALLLFIPVPFCGDGDRCPTVSLV*ITLFKL Trigger: CAGCTTGAACAAAGTGATTCAGACCAAACTCACTGT...AGGACACCGATCTCCATCTCCACAGAATGGCACGGGTATGAAAAGAAGGAGCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR GCA 90 bp | TCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAGTGATGGTCTTGCTCCACCATTaGCCAGTATGGAGAAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SDDWAGSSSDTVKSEQVMVLLHH*PVWRRG Trigger: GCCCCTTCTCCATACTGGGCAATGGTGGAGCAAGAC...CATCACTTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR GCA 90 bp | CTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGGGGAGATGGCTCTGTCTTaGTCCACCATTGCCCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LACFSPDIPSKSITERVGEMALS*STIAQY Trigger: ATACTGGGCAATGGTGGAGCAAGACAGAGCCATCTC...CCCCACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| 3UTR CAA 72 bp | GAATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTaGCTTAGTTGCACATGTGATGCTGTTCACATTCAG | + |
|
Preference number: 4 (lower is better) Translates to: EWQRGSHLETFC*LSCTCDAVHIQ Trigger: CTGAATGTGAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | ATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGATGCTGTTCACATTCAGACACCATTGCCCAGTATaGAGAAGGGGCCCTCAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: IWRPSVCLVAHVMLFTFRHHCPV*RRGPQF Trigger: GAACTGAGGGCCCCTTCTCCATACTGGGCAATGGTG...TCTGAATGTGAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | TTCCTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGCGGCTCCGTTTTCTTTaGTGTGCTGGCTGGAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: FLACFSPDIPSKSITERVRLRFL*CAGWRI Trigger: AATCCTCCAGCCAGCACACCAAAGAAAACGGAGCCG...CACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208635.2 |
||
| CDS-3UTR CCA 90 bp | TTCCTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGTGGTGTGTGTGGGATTaGAAATTTGGTCTCGGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: FLACFSPDIPSKSITERVWCVWD*KFGLGD Trigger: ATCCCCGAGACCAAATTTCCAATCCCACACACACCA...CACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | TTAATGTCTCTGCCAACACTAATAGTGCGCTCCTTCTTTTCATACCCGTGCCATACATCTTGCCATTCCTaGCTGGAGGATTCCATCACT | + |
|
Preference number: 4 (lower is better) Translates to: LMSLPTLIVRSFFSYPCHTSCHS*LEDSIT Trigger: AGTGATGGAATCCTCCAGCCAGGAATGGCAAGATGT...ATGGCACGGGTATGAAAAGAAGGAGCGCACTATTAGTGTTGGCAGAGACATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127845.2 |
||
| 3UTR CAA 72 bp | GTTTCTGAAGAACATCCTCTCAGCTGGTTCCTTCATTaGTGTCTGACTCCTTCTGTCTCTTCCTTGCTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: VSEEHPLSWFLH*CLTPSVSSLLV Trigger: AACAAGCAAGGAAGAGACAGAAGGAGTCAGACACAAATGAAGGAACCAGCTGAGAGGATGTTCTTCAGAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| 3UTR CAA 72 bp | TGGCCACAGATTTGCAAACCAATACCTAACCAAACTTaGATACCTGTTTACCATTGCCCTCCTCAACCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: WPQICKPIPNQT*IPVYHCPPQPV Trigger: CACAGGTTGAGGAGGGCAATGGTAAACAGGTATCAAAGTTTGGTTAGGTATTGGTTTGCAAATCTGTGGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR TCA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAACAGTGAGTTTGGTCTaGATCACTTTGTTCAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQTVSLV*ITLFKL Trigger: CAGCTTGAACAAAGTGATTCAGACCAAACTCACTGT...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR TCA 90 bp | ACCTGCGTTTCTGAAGAACATCCTCTCAGCTGGTTCCTTCATTTGTGTCTGACTGCACTGTCCCTATGGTaGTATTTTGCAAAAGCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: TCVSEEHPLSWFLHLCLTALSLW*YFAKAL Trigger: TAAAGCTTTTGCAAAATATCACCATAGGGACAGTGC...AGTCAGACACAAATGAAGGAACCAGCTGAGAGGATGTTCTTCAGAAACGCAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR TCA 90 bp | ATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGATGCTGTTCACATTCAGAACAGTGAGTTTGGTCTaGATCACTTTGTTCAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: IWRPSVCLVAHVMLFTFRTVSLV*ITLFKL Trigger: CAGCTTGAACAAAGTGATTCAGACCAAACTCACTGT...TCTGAATGTGAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAATTTCTTTGGTGTGTGTaGGATTGGAAATTTGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQFLWCV*DWKFGL Trigger: GAGACCAAATTTCCAATCCCACACACACCAAAGAAA...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR TCA 90 bp | ATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGATGCTGTTCACATTCAGATTCTTGTCATCCTTGTaGATGACTACATCCGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: IWRPSVCLVAHVMLFTFRFLSSL*MTTSEL Trigger: TAACTCGGATGTAGTCATTCACAAGGATGACAAGAA...TCTGAATGTGAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CCA 90 bp | CGTGTAGGAAATCTACAAATCAACACCATGGTAAGGCATAAAAATGGGATGTTTCGGCTCCGTTTTCTTTaGTGTGTGTGGGATTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: RVGNLQINTMVRHKNGMFRLRFL*CVWDWK Trigger: TTTCCAATCCCACACACACCAAAGAAAACGGAGCCG...AAACATCCCATTTTTATGCCTTACCATGGTGTTGATTTGTAGATTTCCTACACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR GCA 90 bp | CGTGTAGGAAATCTACAAATCAACACCATGGTAAGGCATAAAAATGGGATGTTTTTCTTTTCATACCCGTaGCATTCTGTGGAGATGGAG | + |
|
Preference number: 4 (lower is better) Translates to: RVGNLQINTMVRHKNGMFFFSYP*HSVEME Trigger: CTCCATCTCCACAGAATGGCACGGGTATGAAAAGAA...AAACATCCCATTTTTATGCCTTACCATGGTGTTGATTTGTAGATTTCCTACACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| 3UTR CAA 72 bp | ATAGTGACTCCCAGCTGTCCTAGTGTCAATAAAGCATaGTGTGTAAATGTTCTTCTTGCATTCTTTCTAAGC | + |
|
Preference number: 4 (lower is better) Translates to: IVTPSCPSVNKA*CVNVLLAFFLS Trigger: GCTTAGAAAGAATGCAAGAAGAACATTTACACACAATGCTTTATTGACACTAGGACAGCTGGGAGTCACTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | ATTGGCAGTGGAGGAGGACGAGGAGGAGATGGCTCTGTCTTGCTCCACCATTGCAGGCCCAATCCCAGGTaGCCCACAGTGAGTTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: IGSGGGRGGDGSVLLHHCRPNPR*PTVSLV Trigger: GACCAAACTCACTGTGGGCAACCTGGGATTGGGCCT...GCAATGGTGGAGCAAGACAGAGCCATCTCCTCCTCGTCCTCCTCCACTGCCAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS GCA 90 bp | GCTCCGTTTTCTTTGGTGTGCTGGCTGGAGGATTCCATCACTGGCTaGGGCCCCTTTATTGATGAGGTGGCTAATCTGGAGGTAGGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: APFSLVCWLEDSITG*GPFIDEVANLEVGS Trigger: GGACCCTACCTCCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGCACACCAAAGAAAACGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | CTTTTCATACCCGTGCCATTCTGTGGAGATGGAGATCGGTGTCCTTACGGGGTGGCTGCGGCCCCTTTATaGATGAGGTGGCTAATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: LFIPVPFCGDGDRCPYGVAAAPL*MRWLIW Trigger: CCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGC...CACCCCGTAAGGACACCGATCTCCATCTCCACAGAATGGCACGGGTATGAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS TCA 90 bp | ATGACGACCAGGCCCAATCCCAGGTTGCCCACAGTGAGTTTGGTCTaGATCACTTTGTTCAAGCTGCTTACAGACGCCTTGGCCTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: MTTRPNPRLPTVSLV*ITLFKLLTDALALE Trigger: CTCCAAGGCCAAGGCGTCTGTAAGCAGCTTGAACAAAGTGATTCAGACCAAACTCACTGTGGGCAACCTGGGATTGGGCCTGGTCGTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS GCA 90 bp | AACACTAATCAGAACATCACCTGGCTGGAGGATTCCATCACTGGCTaGGGCCCCTTTATTGATGAGGTGGCTAATCTGGAGGTAGGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: NTNQNITWLEDSITG*GPFIDEVANLEVGS Trigger: GGACCCTACCTCCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGGTGATGTTCTGATTAGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | AATGGCAGCGGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGGCTGCGGCCCCTTTATaGATGAGGTGGCTAATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: NGSGVLIWRPSVCLVAHVAAAPL*MRWLIW Trigger: CCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGC...CACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCCGCTGCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | CCAGTATGGAGAAGGGGCCCTCAGTTCCTTCTTGTCATCCTTGTGAATGACTACGCTGCGGCCCCTTTATaGATGAGGTGGCTAATCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PVWRRGPQFLLVILVNDYAAAPL*MRWLIW Trigger: CCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGC...GTAGTCATTCACAAGGATGACAAGAAGGAACTGAGGGCCCCTTCTCCATACTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | GGGGTTCTCATCTGGAGACCTTCTGTTTGCTTAGTTGCACATGTGATGCTGTTCTGTCTTGCTCCACCATaGCCCAGTATGGAGAAGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GVLIWRPSVCLVAHVMLFCLAPP*PSMEKG Trigger: CCCCTTCTCCATACTGGGCAATGGTGGAGCAAGACA...GAACAGCATCACATGTGCAACTAAGCAAACAGAAGGTCTCCAGATGAGAACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | ACCTGCGTTTCTGAAGAACATCCTCTCAGCTGGTTCCTTCATTTGTGTCTGACTCCGGCTCCGTTTTCTTaGGTGTGCTGGCTGGAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: TCVSEEHPLSWFLHLCLTPAPFS*VCWLED Trigger: ATCCTCCAGCCAGCACACCAAAGAAAACGGAGCCGG...AGTCAGACACAAATGAAGGAACCAGCTGAGAGGATGTTCTTCAGAAACGCAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | TCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAAGTGATGAGGCCCAATCCCAGGTaGCCCACAGTGAGTTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: SDDWAGSSSDTVKSEQVMRPNPR*PTVSLV Trigger: GACCAAACTCACTGTGGGCAACCTGGGATTGGGCCT...CATCACTTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | TGCCCTCCTCAACCTGTGCATAATCCTCCAGCCAGAAGGCATCTGAGGAGGAAGCTTGGCCTTGGAGAGTaGTTCTTTTTCATTTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: CPPQPVHNPPARRHLRRKLGLGE*FFFIFA Trigger: AGCAAAAATGAAAAAGAACAACTCTCCAAGGCCAAG...CTTCCTCCTCAGATGCCTTCTGGCTGGAGGATTATGCACAGGTTGAGGAGGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | CTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGGGGTTGGTGTGTGTGGGATaGGAAATTTGGTCTCGGGGA | + |
|
Preference number: 5 (lower is better) Translates to: LACFSPDIPSKSITERVGLVCVG*EIWSRG Trigger: TCCCCGAGACCAAATTTCCAATCCCACACACACCAA...CCCCACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | ATGTTCAGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGGAGATGGCTCTGTCTaGCTCCACCATTGCCCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: MFSHSDDWAGSSSDTVKSGDGSV*LHHCPV Trigger: TACTGGGCAATGGTGGAGCAAGACAGAGCCATCTCC...AGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCTGAACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | ATGTTCAGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGATACCTGTTTACCATaGCCCTCCTCAACCTGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: MFSHSDDWAGSSSDTVKSDTCLP*PSSTCA Trigger: TGCACAGGTTGAGGAGGGCAATGGTAAACAGGTATC...AGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCTGAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
||
| CDS-3UTR CAA 90 bp | ACCTGCGTTTCTGAAGAACATCCTCTCAGCTGGTTCCTTCATTTGTGTCTGACTCTTGGCCTTGGAGAGTaGTTCTTTTTCATTTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TCVSEEHPLSWFLHLCLTLGLGE*FFFIFA Trigger: AGCAAAAATGAAAAAGAACAACTCTCCAAGGCCAAG...AGTCAGACACAAATGAAGGAACCAGCTGAGAGGATGTTCTTCAGAAACGCAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
||
| CDS-3UTR CAA 90 bp | TTCCTTGCTTGTTTCAGTCCTGACATTCCCAGTAAAAGTATCACTGAGAGGGTGCAAATCATACACATCTaGCCATTCCTGGGGTATTTC | + |
|
Preference number: 5 (lower is better) Translates to: FLACFSPDIPSKSITERVQIIHI*PFLGYF Trigger: GAAATACCCCAGGAATGGCAAGATGTGTATGATTTG...CACCCTCTCAGTGATACTTTTACTGGGAATGTCAGGACTGAAACAAGCAAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS-3UTR CAA 90 bp | AGCCATTCTGATGATTGGGCAGGTTCCTCTAGTGACACTGTAAAATCTGAGCAACTTGGCCTTGGAGAGTaGTTCTTTTTCATTTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: SHSDDWAGSSSDTVKSEQLGLGE*FFFIFA Trigger: AGCAAAAATGAAAAAGAACAACTCTCCAAGGCCAAG...TTGCTCAGATTTTACAGTGTCACTAGAGGAACCTGCCCAATCATCAGAATGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| CDS-3UTR CAA 90 bp | ACGAGTTATAACACATGCGTGTATTTAAAGCTCAGCCCAGACCAGCAAGCACATGTATATCCTAACACATaGGCATGTCCAACACTAATC | + |
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Preference number: 5 (lower is better) Translates to: TSYNTCVYLKLSPDQQAHVYPNT*ACPTLI Trigger: GATTAGTGTTGGACATGCCAATGTGTTAGGATATAC...ATGTGCTTGCTGGTCTGGGCTGAGCTTTAAATACACGCATGTGTTATAACTCGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CCA 72 bp | GAGACTCTCTTGCCGGCTCCGTTTTCTTTGGTGTGCTaGCTGGAGGATTCCATCACTGGCTGCGGCCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: ETLLPAPFSLVC*LEDSITGCGPF Trigger: AAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGCACACCAAAGAAAACGGAGCCGGCAAGAGAGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208635.2 |
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| CDS CCA 72 bp | CTCTCTTGCCGGCTCCGTTTTCTTTGGTGTGCTGGCTaGAGGATTCCATCACTGGCTGCGGCCCCTTTATTG | + |
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Preference number: 6 (lower is better) Translates to: LSCRLRFLWCAG*RIPSLAAAPLL Trigger: CAATAAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGCACACCAAAGAAAACGGAGCCGGCAAGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208635.2 |
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| CDS GCA 72 bp | CAGAACATCACCTGGCTGGAGGATTCCATCACTGGCTaGGGCCCCTTTATTGATGAGGTGGCTAATCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: QNITWLEDSITG*GPFIDEVANLE Trigger: CTCCAGATTAGCCACCTCATCAATAAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGGTGATGTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CCA 72 bp | CACATTGGCATGTCCAACACTAATCAGAACATCACCTaGCTGGAGGATTCCATCACTGGCTGCGGCCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: HIGMSNTNQNIT*LEDSITGCGPF Trigger: AAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGGTGATGTTCTGATTAGTGTTGGACATGCCAATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS TCA 72 bp | AGGCCCAATCCCAGGTTGCCCACAGTGAGTTTGGTCTaGATCACTTTGTTCAAGCTGCTTACAGACGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: RPNPRLPTVSLV*ITLFKLLTDAL Trigger: CAAGGCGTCTGTAAGCAGCTTGAACAAAGTGATTCAGACCAAACTCACTGTGGGCAACCTGGGATTGGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033178.4 ENSMUST00000127845.2 ENSMUST00000208635.2 |
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| CDS CCA 72 bp | TTGGCATGTCCAACACTAATCAGAACATCACCTGGCTaGAGGATTCCATCACTGGCTGCGGCCCCTTTATTG | + |
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Preference number: 6 (lower is better) Translates to: LACPTLIRTSPG*RIPSLAAAPLL Trigger: CAATAAAGGGGCCGCAGCCAGTGATGGAATCCTCCAGCCAGGTGATGTTCTGATTAGTGTTGGACATGCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CAA 90 bp | CAAGAGACTCTCTTGCCGGCTCCGTTTTCTTTGGTGTGTGTGGGATaGGAAATTTGGTCTCGGGGATCAAATCATACACATCTTGCCATT | + |
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Preference number: 6 (lower is better) Translates to: QETLLPAPFSLVCVG*EIWSRGSNHTHLAI Trigger: AATGGCAAGATGTGTATGATTTGATCCCCGAGACCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGAGAGTCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CCA 72 bp | TCTTGCCGGCTCCGTTTTCTTTGGTGTGTGTGGGATTaGAAATTTGGTCTCGGGGATCAAATCATACACATC | + |
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Preference number: 6 (lower is better) Translates to: SCRLRFLWCVWD*KFGLGDQIIHI Trigger: GATGTGTATGATTTGATCCCCGAGACCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CAA 72 bp | CTCTTGCCGGCTCCGTTTTCTTTGGTGTGTGTGGGATaGGAAATTTGGTCTCGGGGATCAAATCATACACAT | + |
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Preference number: 6 (lower is better) Translates to: LLPAPFSLVCVG*EIWSRGSNHTH Trigger: ATGTGTATGATTTGATCCCCGAGACCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGCCGGCAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CCA 72 bp | GCTCCGTTTTCTTTGGTGTGTGTGGGATTGGAAATTTaGTCTCGGGGATCAAATCATACACATCTTGCCATT | + |
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Preference number: 6 (lower is better) Translates to: APFSLVCVGLEI*SRGSNHTHLAI Trigger: AATGGCAAGATGTGTATGATTTGATCCCCGAGACCAAATTTCCAATCCCACACACACCAAAGAAAACGGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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| CDS CAA 72 bp | AGCTTTAAAAATTCACGGAGCGTATATCCTAACACATaGGCATGTCCAACACTAATCAGAACATCACCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SFKNSRSVYPNT*ACPTLIRTSPG Trigger: GCCAGGTGATGTTCTGATTAGTGTTGGACATGCCAATGTGTTAGGATATACGCTCCGTGAATTTTTAAAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033178.4 |
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