Pregenerated sensors for PDZD11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015668Ensembl transcript IDs: ENSMUST00000015812.12, ENSMUST00000059099.7
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCGAGAGTACAATTTCCTaGCTTCTCCAACTTCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: MGLQGIYVQGLDGMARQIESTIS*LLQLLR Trigger: TCTGAGAAGTTGGAGAAGTCAGGAAATTGTACTCTC...GATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR-3UTR TCA 90 bp | ATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGAAGGTTCCCTCTCCTTTTCCAGAATaGAACTCACCTAGCAAACTA | + |
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Preference number: 2 (lower is better) Translates to: IYVQGLDGMARQIRWKVPSPFPE*NSPSKL Trigger: TAGTTTGCTAGGTGAGTTTCATTCTGGAAAAGGAGA...GGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR-3UTR TCA 90 bp | GACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATTCTCCTTTTCCAGAATaGAACTCACCTAGCAAACTA | + |
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Preference number: 2 (lower is better) Translates to: DSKVYMYKDWMAWPGKSDSPFPE*NSPSKL Trigger: TAGTTTGCTAGGTGAGTTTCATTCTGGAAAAGGAGA...ATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR CCA 72 bp | CTTCTCCAACTTCTCAGAGGTCTAGCCAGCTTGTCCTaGCAGATCCCACACGGAAGGCTGTGGGCTGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: LLQLLRGLASLS*QIPHGRLWAAS Trigger: ACTTGCAGCCCACAGCCTTCCGTGTGGGATCTGCCAGGACAAGCTGGCTAGACCTCTGAGAAGTTGGAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR CCA 72 bp | TTGGGTGGGGGCGGGGATGAGCAGGACGTGTCTCCTTaGAGTTTCCTAAGTGTATGGGACTCCAAGGTATAT | + |
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Preference number: 3 (lower is better) Translates to: LGGGGDEQDVSP*SFLSVWDSKVY Trigger: ATATACCTTGGAGTCCCATACACTTAGGAAACTCCAAGGAGACACGTCCTGCTCATCCCCGCCCCCACCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR TCA 72 bp | CCACTAAACCAGGACGGTGTGGAGAGTACAATTTCCTaGCTTCTCCAACTTCTCAGAGGTCTAGCCAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: PLNQDGVESTIS*LLQLLRGLASL Trigger: CAAGCTGGCTAGACCTCTGAGAAGTTGGAGAAGTCAGGAAATTGTACTCTCCACACCGTCCTGGTTTAGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR CCA 72 bp | GACTCCAAGGTATATATGTACAAGGACTGGATGGCATaGCCAGGCAAATCAGATGGAAGGTTCCCAAGACTT | + |
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Preference number: 3 (lower is better) Translates to: DSKVYMYKDWMA*PGKSDGRFPRL Trigger: AAGTCTTGGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR CCA 72 bp | AGTGTATGGGACTCCAAGGTATATATGTACAAGGACTaGATGGCATGGCCAGGCAAATCAGATGGAAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: SVWDSKVYMYKD*MAWPGKSDGRF Trigger: GAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCATACACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| 3UTR CCA 72 bp | GAGCAGGACGTGTCTCCTTGGAGTTTCCTAAGTGTATaGGACTCCAAGGTATATATGTACAAGGACTGGATG | + |
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Preference number: 3 (lower is better) Translates to: EQDVSPWSFLSV*DSKVYMYKDWM Trigger: CATCCAGTCCTTGTACATATATACCTTGGAGTCCCATACACTTAGGAAACTCCAAGGAGACACGTCCTGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR GCA 90 bp | CTTCTCCAACTTCTCAGAGGTCTAGCCAGCTTGTCCTGGCAGATCCCACACGGACCCTTCTTGAAGTCCTaGTCGATGTGCATCCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: LLQLLRGLASLSWQIPHGPFLKS*SMCIRV Trigger: GACTCGGATGCACATCGAGCAGGACTTCAAGAAGGG...TCCGTGTGGGATCTGCCAGGACAAGCTGGCTAGACCTCTGAGAAGTTGGAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR GCA 90 bp | ACTTCTCCAACTTCTCAGAGGTCTAGCCAGCTTGTCCTGGCAGATCCCACACGGAAGTCCTGCTCGATGTaGATCCGAGTCTGGAATCAC | + |
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Preference number: 4 (lower is better) Translates to: TSPTSQRSSQLVLADPTRKSCSM*IRVWNH Trigger: GTGATTCCAGACTCGGATGCACATCGAGCAGGACTT...CCGTGTGGGATCTGCCAGGACAAGCTGGCTAGACCTCTGAGAAGTTGGAGAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR TCA 90 bp | ATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGAAGGTTCCCAGCGCACACGCATGCTaGTTTCTCGGGCTGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: IYVQGLDGMARQIRWKVPSAHAC*FLGLSS Trigger: TGAAGACAGCCCGAGAAATCAGCATGCGTGTGCGCT...GGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR GCA 90 bp | ATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCCCCTTCTTGAAGTCCTaGTCGATGTGCATCCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: MGLQGIYVQGLDGMARQIPFLKS*SMCIRV Trigger: GACTCGGATGCACATCGAGCAGGACTTCAAGAAGGG...GATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR GCA 90 bp | ATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGAAGGTTCCCAAGTCCTGCTCGATGTaGATCCGAGTCTGGAATCAC | + |
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Preference number: 4 (lower is better) Translates to: IYVQGLDGMARQIRWKVPKSCSM*IRVWNH Trigger: GTGATTCCAGACTCGGATGCACATCGAGCAGGACTT...GGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR TCA 90 bp | GGAACTCCTAGTACAGTACAGTACATAATACAGCTGGTAAGCCGTCACCCCATCATGTTAAATCCCAACTaGGCACCAGGAGGCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GTPSTVQYIIQLVSRHPIMLNPN*APGGFF Trigger: GAAGAAGCCTCCTGGTGCTCAGTTGGGATTTAACAT...GATGGGGTGACGGCTTACCAGCTGTATTATGTACTGTACTGTACTAGGAGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR TCA 90 bp | TGTATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATGTTAAATCCCAACTaGGCACCAGGAGGCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: CMGLQGIYVQGLDGMARQMLNPN*APGGFF Trigger: GAAGAAGCCTCCTGGTGCTCAGTTGGGATTTAACAT...TTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCATACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CCA 90 bp | ATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCATGTGCATCCGAGTCTaGAATCACCTTGGAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: MGLQGIYVQGLDGMARQIMCIRV*NHLGDE Trigger: TTCATCTCCAAGGTGATTCCAGACTCGGATGCACAT...GATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CCA 90 bp | GACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATATGTGCATCCGAGTCTaGAATCACCTTGGAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: DSKVYMYKDWMAWPGKSDMCIRV*NHLGDE Trigger: TTCATCTCCAAGGTGATTCCAGACTCGGATGCACAT...ATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR GCA 90 bp | GACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGATTTCCACAGCTTTaGTGTGCTCAATATCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: DSKVYMYKDWMAWPGKSDGFPQL*CAQYLG Trigger: TCCAAGATATTGAGCACAGCAAAGCTGTGGAAATCC...ATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CAA 90 bp | ACTTCTCCAACTTCTCAGAGGTCTAGCCAGCTTGTCCTGGCAGATCCCACACGGCACAGTCCGTTCCTTTaGGCGATGATAATTGTAGGG | + |
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Preference number: 5 (lower is better) Translates to: TSPTSQRSSQLVLADPTRHSPFL*AMIIVG Trigger: CCCTACAATTATCATCGCCAAAAGGAACGGACTGTG...CCGTGTGGGATCTGCCAGGACAAGCTGGCTAGACCTCTGAGAAGTTGGAGAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CAA 90 bp | ATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGAAGGTTCCCGAGTCTGGAATCACCTaGGAGATGAAGATGCCTAGC | + |
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Preference number: 5 (lower is better) Translates to: IYVQGLDGMARQIRWKVPESGIT*EMKMPS Trigger: GCTAGGCATCTTCATCTCCAAGGTGATTCCAGACTC...GGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CAA 90 bp | TGTATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAGAGTCTGGAATCACCTaGGAGATGAAGATGCCTAGC | + |
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Preference number: 5 (lower is better) Translates to: CMGLQGIYVQGLDGMARQESGIT*EMKMPS Trigger: GCTAGGCATCTTCATCTCCAAGGTGATTCCAGACTC...TTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCATACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CAA 90 bp | TGTATGGGACTCCAAGGTATATATGTACAAGGACTGGATGGCATGGCCAGGCAAAGGATTTCCACAGCTTaGCTGTGCTCAATATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: CMGLQGIYVQGLDGMARQRISTA*LCSISW Trigger: CCAAGATATTGAGCACAGCAAAGCTGTGGAAATCCT...TTGCCTGGCCATGCCATCCAGTCCTTGTACATATATACCTTGGAGTCCCATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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| CDS-3UTR CAA 90 bp | ATATATGTACAAGGACTGGATGGCATGGCCAGGCAAATCAGATGGAAGGTTCCCAGGATTTCCACAGCTTaGCTGTGCTCAATATCTTGG | + |
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Preference number: 5 (lower is better) Translates to: IYVQGLDGMARQIRWKVPRISTA*LCSISW Trigger: CCAAGATATTGAGCACAGCAAAGCTGTGGAAATCCT...GGGAACCTTCCATCTGATTTGCCTGGCCATGCCATCCAGTCCTTGTACATATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015812.12 ENSMUST00000059099.7 |
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