Pregenerated sensors for PDYN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027400Ensembl transcript IDs: ENSMUST00000028883.12, ENSMUST00000130608.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGCTCAGCCAAATGGCTCCGGCTCCCGCAGCCAACTCGACTACTaGAGAGCACAGCTGTGCCCAGCCGCATCAGCTCCACTCCGATGC | + |
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Preference number: 1 (lower is better) Translates to: MAQPNGSGSRSQLDY*RAQLCPAASAPLRC Trigger: GCATCGGAGTGGAGCTGATGCGGCTGGGCACAGCTGTGCTCTTCAGTAGTCGAGTTGGCTGCGGGAGCCGGAGCCATTTGGCTGAGCCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR TCA 90 bp | TGGATTCTGGGATGGGCAGGGATCACAGGGACAGAGCGGTTACGCTaGAGTCAAAAAGCCACTAGTAGTGGTAGTTTAGAGGTCTTGGGG | + |
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Preference number: 1 (lower is better) Translates to: WILGWAGITGTERLR*SQKATSSGSLEVLG Trigger: CCCCAAGACCTCTAAACTACCACTACTAGTGGCTTTTTGACTTCAGCGTAACCGCTCTGTCCCTGTGATCCCTGCCCATCCCAGAATCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR TCA 90 bp | CAGCACACAAGTCACCGTAAAACAATCTACACATTTCAGAACACATaGAGGGCTCTACAGGCTGTGACCTGTGTGTGGAGAGGGACACTC | + |
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Preference number: 1 (lower is better) Translates to: QHTSHRKTIYTFQNT*RALQAVTCVWRGTL Trigger: GAGTGTCCCTCTCCACACACAGGTCACAGCCTGTAGAGCCCTTCATGTGTTCTGAAATGTGTAGATTGTTTTACGGTGACTTGTGTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | ACAGGCTGTGACCTGTGTGTGGAGAGGGACACTCAAGATATCTTATaGAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCA | + |
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Preference number: 1 (lower is better) Translates to: TGCDLCVERDTQDIL*KYTNPVCFLSCPAP Trigger: TGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGATATCTTGAGTGTCCCTCTCCACACACAGGTCACAGCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | TCCTTGAAAAGGCTTTTCATTTATCCTGTGGCCTCCAGGGTAGGGTaGATAAGAAGAGCCTCTGTGGCTGAGAATATAGTTAGGATCCTC | + |
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Preference number: 1 (lower is better) Translates to: SLKRLFIYPVASRVG*IRRASVAENIVRIL Trigger: GAGGATCCTAACTATATTCTCAGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAAAAGCCTTTTCAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | CTTCTTCTTCCTCTGCTTTTATTTGGAGACAGAGAGAATGAGACTTaGTGTAGTTTTGAGGCGGGACAGTCTCTCCTTCAGCTACCGCTT | + |
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Preference number: 1 (lower is better) Translates to: LLLPLLLFGDRENET*CSFEAGQSLLQLPL Trigger: AAGCGGTAGCTGAAGGAGAGACTGTCCCGCCTCAAAACTACAGCAAGTCTCATTCTCTCTGTCTCCAAATAAAAGCAGAGGAAGAAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | TCTACACTGCATATCTCACAGTTCCCATGCAATACTACCAGGAAGTaGTCATTTTTCTTCCGAGAGGAGCACACGTTCAGTGAAGTTTGG | + |
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Preference number: 1 (lower is better) Translates to: STLHISQFPCNTTRK*SFFFREEHTFSEVW Trigger: CCAAACTTCACTGAACGTGTGCTCCTCTCGGAAGAAAAATGAGCACTTCCTGGTAGTATTGCATGGGAACTGTGAGATATGCAGTGTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | TGTATCTGGTTTTATGTTTCTACACTGCATATCTCACAGTTCCCATaGAATACTACCAGGAAGTGCTCATTTTTCTTCCGAGAGGAGCAC | + |
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Preference number: 1 (lower is better) Translates to: CIWFYVSTLHISQFP*NTTRKCSFFFREEH Trigger: GTGCTCCTCTCGGAAGAAAAATGAGCACTTCCTGGTAGTATTGCATGGGAACTGTGAGATATGCAGTGTAGAAACATAAAACCAGATACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | GCGAATCCACTTGATCCTGAACACTCAGTTGTCTTCTTCTTCCTCTaGTTTTATTTGGAGACAGAGAGAATGAGACTTGCTGTAGTTTTG | + |
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Preference number: 1 (lower is better) Translates to: ANPLDPEHSVVFFFL*FYLETERMRLAVVL Trigger: CAAAACTACAGCAAGTCTCATTCTCTCTGTCTCCAAATAAAAGCAGAGGAAGAAGAAGACAACTGAGTGTTCAGGATCAAGTGGATTCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 90 bp | AAGTGCTCATTTTTCTTCCGAGAGGAGCACACGTTCAGTGAAGTTTaGAAACCACAGACGTATAGGAATAAAGAACAAGTTTCTCTGGAT | + |
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Preference number: 1 (lower is better) Translates to: KCSFFFREEHTFSEV*KPQTYRNKEQVSLD Trigger: ATCCAGAGAAACTTGTTCTTTATTCCTATACGTCTGTGGTTTCCAAACTTCACTGAACGTGTGCTCCTCTCGGAAGAAAAATGAGCACTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 90 bp | AGGAAACTACACAGACCTATTAAGGATCACATGTCCCAAGTAGGTTaGATAAATGTGATTTTTAAGCAGCACACAAGTCACCGTAAAACA | + |
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Preference number: 1 (lower is better) Translates to: RKLHRPIKDHMSQVG*INVIFKQHTSHRKT Trigger: TGTTTTACGGTGACTTGTGTGCTGCTTAAAAATCACATTTATCCAACCTACTTGGGACATGTGATCCTTAATAGGTCTGTGTAGTTTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 90 bp | ATAAGAAGAGCCTCTGTGGCTGAGAATATAGTTAGGATCCTCATTTaGATGTATCTGGTTTTATGTTTCTACACTGCATATCTCACAGTT | + |
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Preference number: 1 (lower is better) Translates to: IRRASVAENIVRILI*MYLVLCFYTAYLTV Trigger: AACTGTGAGATATGCAGTGTAGAAACATAAAACCAGATACATGCAAATGAGGATCCTAACTATATTCTCAGCCACAGAGGCTCTTCTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR TCA 90 bp | ATACTACCAGGAAGTGCTCATTTTTCTTCCGAGAGGAGCACACGTTCAGTGAAGTTCCCTGCCCCTGCCTaGAAACAAGCAGAACAGGGG | + |
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Preference number: 2 (lower is better) Translates to: ILPGSAHFSSERSTRSVKFPAPA*KQAEQG Trigger: CCCCTGTTCTGCTTGTTTTCAGGCAGGGGCAGGGAA...CTTCACTGAACGTGTGCTCCTCTCGGAAGAAAAATGAGCACTTCCTGGTAGTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR TCA 90 bp | TTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTGGAGCACACGTTCAGTaGAGTTTGGAAACCACAGAC | + |
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Preference number: 2 (lower is better) Translates to: FIYPVASRVGCIRRASVAGAHVQ*SLETTD Trigger: GTCTGTGGTTTCCAAACTTCACTGAACGTGTGCTCC...AGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | TTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTACTCTTCCCTGCCCCTaGCTGAAAACAAGCAGAACA | + |
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Preference number: 2 (lower is better) Translates to: FIYPVASRVGCIRRASVATLPCP*LKTSRT Trigger: TGTTCTGCTTGTTTTCAGGCAGGGGCAGGGAAGAGT...AGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | CACATGAAGGGCTCTACAGGCTGTGACCTGTGTGTGGAGAGGGACACTCAAGATATCTCACAGTTCCCATaGAATACTACCAGGAAGTGC | + |
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Preference number: 2 (lower is better) Translates to: HMKGSTGCDLCVERDTQDISQFP*NTTRKC Trigger: GCACTTCCTGGTAGTATTGCATGGGAACTGTGAGAT...ATCTTGAGTGTCCCTCTCCACACACAGGTCACAGCCTGTAGAGCCCTTCATGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CCA 90 bp | ATCTTATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCATACGCTGGGCCAAATaGCTCAGCCAAATGGCTCCG | + |
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Preference number: 2 (lower is better) Translates to: ILCKYTNPVCFLSCPAPSIRWAK*LSQMAP Trigger: CGGAGCCATTTGGCTGAGCCATTTGGCCCAGCGTAT...GGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | ATCTTATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCATCTCCACTCTTCCCTaGCCCTGCCTGAAAACAAGC | + |
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Preference number: 2 (lower is better) Translates to: ILCKYTNPVCFLSCPAPSISTLP*PCLKTS Trigger: GCTTGTTTTCAGGCAGGGGCAGGGAAGAGTGGAGAT...GGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CCA 90 bp | GTTAACTCATCATCTAAATATCTGCCTGGAGATGGGGAGGTGAAACCAAAGAGGCTCTGGATTCTGGGATaGGCAGGGATCACAGGGACA | + |
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Preference number: 2 (lower is better) Translates to: VNSSSKYLPGDGEVKPKRLWILG*AGITGT Trigger: TGTCCCTGTGATCCCTGCCCATCCCAGAATCCAGAG...CCTCTTTGGTTTCACCTCCCCATCTCCAGGCAGATATTTAGATGATGAGTTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CCA 90 bp | ATCTTATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCAGTTTCTCTGGATTCTaGGATGGGCAGGGATCACAG | + |
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Preference number: 2 (lower is better) Translates to: ILCKYTNPVCFLSCPAPSSFSGF*DGQGSQ Trigger: CTGTGATCCCTGCCCATCCCAGAATCCAGAGAAACT...GGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR TCA 90 bp | AACTCATCATCTAAATATCTGCCTGGAGATGGGGAGGTGAAACCAAAGAGGACCTTTCCAGGAAACGTTTaGAACTATGAGGACTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: NSSSKYLPGDGEVKPKRTFPGNV*NYEDSG Trigger: CCCAGAGTCCTCATAGTTTCAAACGTTTCCTGGAAA...GGTCCTCTTTGGTTTCACCTCCCCATCTCCAGGCAGATATTTAGATGATGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | CATCATAAGCAAGGGGATTTCACCCTTGGGAAAGGTACTGCCCTAACCGGGGTCTTTATGTTTCTACACTaGATATCTCACAGTTCCCAT | + |
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Preference number: 2 (lower is better) Translates to: HHKQGDFTLGKGTALTGVFMFLH*ISHSSH Trigger: ATGGGAACTGTGAGATATGCAGTGTAGAAACATAAA...GACCCCGGTTAGGGCAGTACCTTTCCCAAGGGTGAAATCCCCTTGCTTATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | ATCTTATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCAGAGAGAATGAGACTTaGTGTAGTTTTGAGGCGGGA | + |
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Preference number: 2 (lower is better) Translates to: ILCKYTNPVCFLSCPAPSRENET*CSFEAG Trigger: TCCCGCCTCAAAACTACAGCAAGTCTCATTCTCTCT...GGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CCA 90 bp | CTGTCCTTGAAAAGGCTTTTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAACGTTCAGTGAAGTTTaGAAACCACAGACGTATAGG | + |
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Preference number: 2 (lower is better) Translates to: LSLKRLFIYPVASRVGCITFSEV*KPQTYR Trigger: CCTATACGTCTGTGGTTTCCAAACTTCACTGAACGT...TATGCACCCTACCCTGGAGGCCACAGGATAAATGAAAAGCCTTTTCAAGGACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CAA 90 bp | CTTGATCCTGAACACTCAGTTGTCTTCTTCTTCCTCTGCTTTTATTaGGAGACAGAGAGAATGAGACTTGCTGTAGTTTTGAGGCGGGAC | + |
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Preference number: 2 (lower is better) Translates to: LDPEHSVVFFFLCFY*ETERMRLAVVLRRD Trigger: GTCCCGCCTCAAAACTACAGCAAGTCTCATTCTCTCTGTCTCCAAATAAAAGCAGAGGAAGAAGAAGACAACTGAGTGTTCAGGATCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR GCA 90 bp | AGAAGTGTGATACTGATCGGTTTTAATGAGGGCTGTGGGAACTGGCCCAAATTCAATACTACCAGGAAGTaGTCATTTTTCTTCCGAGAG | + |
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Preference number: 2 (lower is better) Translates to: RSVILIGFNEGCGNWPKFNTTRK*SFFFRE Trigger: CTCTCGGAAGAAAAATGAGCACTTCCTGGTAGTATT...GAATTTGGGCCAGTTCCCACAGCCCTCATTAAAACCGATCAGTATCACACTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CCA 90 bp | TTATTATACCAGAGAAGCAGGAAACTACACAGACCTATTAAGGATCACATGTCCATATCTGCCTGGAGATaGGGAGGTGAAACCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LLYQRSRKLHRPIKDHMSISAWR*GGETKE Trigger: CTCTTTGGTTTCACCTCCCCATCTCCAGGCAGATAT...GGACATGTGATCCTTAATAGGTCTGTGTAGTTTCCTGCTTCTCTGGTATAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | TCCCCTTCCCAGTGCCAGTGCATACGCTGGGCCAAATaGCTCAGCCAAATGGCTCCGGCTCCCGCAGCCAAC | + |
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Preference number: 3 (lower is better) Translates to: SPSQCQCIRWAK*LSQMAPAPAAN Trigger: GTTGGCTGCGGGAGCCGGAGCCATTTGGCTGAGCCATTTGGCCCAGCGTATGCACTGGCACTGGGAAGGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR TCA 72 bp | CCAAATGGCTCCGGCTCCCGCAGCCAACTCGACTACTaGAGAGCACAGCTGTGCCCAGCCGCATCAGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: PNGSGSRSQLDY*RAQLCPAASAP Trigger: TGGAGCTGATGCGGCTGGGCACAGCTGTGCTCTTCAGTAGTCGAGTTGGCTGCGGGAGCCGGAGCCATTTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | GCTTCTGGATCCCCTTCCCAGTGCCAGTGCATACGCTaGGCCAAATGGCTCAGCCAAATGGCTCCGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: ASGSPSQCQCIR*AKWLSQMAPAP Trigger: GGGAGCCGGAGCCATTTGGCTGAGCCATTTGGCCCAGCGTATGCACTGGCACTGGGAAGGGGATCCAGAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | TTGAGGCGGGACAGTCTCTCCTTCAGCTACCGCTTCTaGATCCCCTTCCCAGTGCCAGTGCATACGCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: LRRDSLSFSYRF*IPFPVPVHTLG Trigger: GCCCAGCGTATGCACTGGCACTGGGAAGGGGATCCAGAAGCGGTAGCTGAAGGAGAGACTGTCCCGCCTCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | TCAGCTACCGCTTCTGGATCCCCTTCCCAGTGCCAGTaGATACGCTGGGCCAAATGGCTCAGCCAAATGGCT | + |
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Preference number: 3 (lower is better) Translates to: SATASGSPSQCQ*IRWAKWLSQMA Trigger: AGCCATTTGGCTGAGCCATTTGGCCCAGCGTATGCACTGGCACTGGGAAGGGGATCCAGAAGCGGTAGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | GCACAGCTGTGCCCAGCCGCATCAGCTCCACTCCGATaGAGTTCCTCATGGGCTAGAAGTGTGATACTGATC | + |
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Preference number: 3 (lower is better) Translates to: AQLCPAASAPLR*SSSWARSVILI Trigger: GATCAGTATCACACTTCTAGCCCATGAGGAACTGCATCGGAGTGGAGCTGATGCGGCTGGGCACAGCTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CAA 90 bp | TTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTGGTAGTTTAGAGGTCTaGGGGTTTGAGCCGGACCCT | + |
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Preference number: 3 (lower is better) Translates to: FIYPVASRVGCIRRASVAGSLEV*GFEPDP Trigger: AGGGTCCGGCTCAAACCCCAAGACCTCTAAACTACC...AGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | CCAGCCGCATCAGCTCCACTCCGATGCAGTTCCTCATaGGCTAGAAGTGTGATACTGATCGGTTTTAATGAG | + |
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Preference number: 3 (lower is better) Translates to: PAASAPLRCSSS*ARSVILIGFNE Trigger: CTCATTAAAACCGATCAGTATCACACTTCTAGCCCATGAGGAACTGCATCGGAGTGGAGCTGATGCGGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CAA 90 bp | TATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCCGTTATCCTGAACACTCAGTaGTCTTCTTCTTCCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: YANIQIQSASSPVQPHPVILNTQ*SSSSSA Trigger: AGCAGAGGAAGAAGAAGACAACTGAGTGTTCAGGAT...AACGGGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | AGGCTTTTCATTTATCCTGTGGCCTCCAGGGTAGGGTaGATAAGAAGAGCCTCTGTGGCTGAGAATATAGTT | + |
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Preference number: 3 (lower is better) Translates to: RLFIYPVASRVG*IRRASVAENIV Trigger: AACTATATTCTCAGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAAAAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | CCTCTGCTTTTATTTGGAGACAGAGAGAATGAGACTTaGTGTAGTTTTGAGGCGGGACAGTCTCTCCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: PLLLFGDRENET*CSFEAGQSLLQ Trigger: CTGAAGGAGAGACTGTCCCGCCTCAAAACTACAGCAAGTCTCATTCTCTCTGTCTCCAAATAAAAGCAGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR TCA 72 bp | AGTCACCGTAAAACAATCTACACATTTCAGAACACATaGAGGGCTCTACAGGCTGTGACCTGTGTGTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: SHRKTIYTFQNT*RALQAVTCVWR Trigger: TCTCCACACACAGGTCACAGCCTGTAGAGCCCTTCATGTGTTCTGAAATGTGTAGATTGTTTTACGGTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | CATATCTCACAGTTCCCATGCAATACTACCAGGAAGTaGTCATTTTTCTTCCGAGAGGAGCACACGTTCAGT | + |
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Preference number: 3 (lower is better) Translates to: HISQFPCNTTRK*SFFFREEHTFS Trigger: ACTGAACGTGTGCTCCTCTCGGAAGAAAAATGAGCACTTCCTGGTAGTATTGCATGGGAACTGTGAGATATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR-3UTR CAA 90 bp | ACACAAGTCACCGTAAAACAATCTACACATTTCAGAACACATGAAGGGCTCTACTTCCTCTGCTTTTATTaGGAGACAGAGAGAATGAGA | + |
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Preference number: 3 (lower is better) Translates to: TQVTVKQSTHFRTHEGLYFLCFY*ETERMR Trigger: TCTCATTCTCTCTGTCTCCAAATAAAAGCAGAGGAA...GTAGAGCCCTTCATGTGTTCTGAAATGTGTAGATTGTTTTACGGTGACTTGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | CCTCATTTGCATGTATCTGGTTTTATGTTTCTACACTaGATATCTCACAGTTCCCATGCAATACTACCAGGA | + |
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Preference number: 3 (lower is better) Translates to: PHLHVSGFMFLH*ISHSSHAILPG Trigger: TCCTGGTAGTATTGCATGGGAACTGTGAGATATGCAGTGTAGAAACATAAAACCAGATACATGCAAATGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | TTTTTCTTCCGAGAGGAGCACACGTTCAGTGAAGTTTaGAAACCACAGACGTATAGGAATAAAGAACAAGTT | + |
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Preference number: 3 (lower is better) Translates to: FFFREEHTFSEV*KPQTYRNKEQV Trigger: AACTTGTTCTTTATTCCTATACGTCTGTGGTTTCCAAACTTCACTGAACGTGTGCTCCTCTCGGAAGAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CCA 72 bp | CACAGACCTATTAAGGATCACATGTCCCAAGTAGGTTaGATAAATGTGATTTTTAAGCAGCACACAAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: HRPIKDHMSQVG*INVIFKQHTSH Trigger: GTGACTTGTGTGCTGCTTAAAAATCACATTTATCCAACCTACTTGGGACATGTGATCCTTAATAGGTCTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR GCA 72 bp | TTTTATGTTTCTACACTGCATATCTCACAGTTCCCATaGAATACTACCAGGAAGTGCTCATTTTTCTTCCGA | + |
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Preference number: 3 (lower is better) Translates to: FYVSTLHISQFP*NTTRKCSFFFR Trigger: TCGGAAGAAAAATGAGCACTTCCTGGTAGTATTGCATGGGAACTGTGAGATATGCAGTGTAGAAACATAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CCA 90 bp | CGGCTCCCGCAGCCAACTCGACTACTGAAGAGCACAGCTGTGCCCAGCCGCATCTGTCCCACTTCAGCTTaGGGCGAATGCGCCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: RLPQPTRLLKSTAVPSRICPTSA*GECAAG Trigger: TCCTGCGGCGCATTCGCCCCAAGCTGAAGTGGGACA...GATGCGGCTGGGCACAGCTGTGCTCTTCAGTAGTCGAGTTGGCTGCGGGAGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR TCA 90 bp | TTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTGGACGGGGCCCATCCTaGATCCTCACTGCACACAGG | + |
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Preference number: 4 (lower is better) Translates to: FIYPVASRVGCIRRASVAGRGPS*ILTAHR Trigger: CCTGTGTGCAGTGAGGATTCAGGATGGGCCCCGTCC...AGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR TCA 90 bp | TTCATTTATCCTGTGGCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTACCGCGTCACCACCTTaGACTGACGCCGCAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: FIYPVASRVGCIRRASVATASPP*TDAAGN Trigger: GTTTCCTGCGGCGTCAGTTCAAGGTGGTGACGCGGT...AGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGCCACAGGATAAATGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR GCA 90 bp | TTGAGGCGGGACAGTCTCTCCTTCAGCTACCGCTTCTGGATCCCCTTCCCAGTGTCCTCTTGGGGTATTTaGGCAAAAAGCCGCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: LRRDSLSFSYRFWIPFPVSSWGI*AKSRHS Trigger: GCTATGGCGGCTTTTTGCGCAAATACCCCAAGAGGA...CACTGGGAAGGGGATCCAGAAGCGGTAGCTGAAGGAGAGACTGTCCCGCCTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR TCA 90 bp | AACTCATCATCTAAATATCTGCCTGGAGATGGGGAGGTGAAACCAAAGAGGACCTCCTCATGCCCTACCTaGTCCCCATCCTGGCCCCCG | + |
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Preference number: 4 (lower is better) Translates to: NSSSKYLPGDGEVKPKRTSSCPT*SPSWPP Trigger: CGGGGGCCAGGATGGGGATCAGGTAGGGCATGAGGA...GGTCCTCTTTGGTTTCACCTCCCCATCTCCAGGCAGATATTTAGATGATGAGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR TCA 90 bp | CAGCGAATCCACTTGATCCTGAACACTCAGTTGTCTTCTTCTTCCTCTGCTTTTTGTCTCCCACTCCTCTaGGGGCGGCACCAGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: QRIHLILNTQLSSSSSAFCLPLL*GRHQVL Trigger: CAGGACCTGGTGCCGCCCTCAGAGGAGTGGGAGACA...AAAAGCAGAGGAAGAAGAAGACAACTGAGTGTTCAGGATCAAGTGGATTCGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR GCA 90 bp | ATCTTATGCAAATATACAAATCCAGTCTGCTTCCTCTCCTGTCCAGCCCCATCCTCAGCTTGGGGCGAATaGGCCGCAGGAAGCCCCCAT | + |
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Preference number: 4 (lower is better) Translates to: ILCKYTNPVCFLSCPAPSSAWGE*AAGSPH Trigger: ATGGGGGCTTCCTGCGGCGCATTCGCCCCAAGCTGA...GGATGGGGCTGGACAGGAGAGGAAGCAGACTGGATTTGTATATTTGCATAAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR GCA 90 bp | AGAAGTGTGATACTGATCGGTTTTAATGAGGGCTGTGGGAACTGGCCCAAATTCCACGAGGAGGCAAGCTaGCAGCATCAGCCTGGACCA | + |
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Preference number: 4 (lower is better) Translates to: RSVILIGFNEGCGNWPKFHEEAS*QHQPGP Trigger: TGGTCCAGGCTGATGCTGGCAGCTTGCCTCCTCGTG...GAATTTGGGCCAGTTCCCACAGCCCTCATTAAAACCGATCAGTATCACACTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR TCA 90 bp | TCATCATCTAAATATCTGCCTGGAGATGGGGAGGTGAAACCAAAGAGGACCTTGGTCACCACCTTGAACTaGCGCCGCAGGAAACCACCA | + |
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Preference number: 4 (lower is better) Translates to: SSSKYLPGDGEVKPKRTLVTTLN*RRRKPP Trigger: TGGTGGTTTCCTGCGGCGTCAGTTCAAGGTGGTGAC...CAAGGTCCTCTTTGGTTTCACCTCCCCATCTCCAGGCAGATATTTAGATGATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CAA 72 bp | CTGCCTGGAGATGGGGAGGTGAAACCAAAGAGGACCTaGTCTCTGACTCTGGGTTACTTGAATCCAGCGAAT | + |
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Preference number: 4 (lower is better) Translates to: LPGDGEVKPKRT*SLTLGYLNPAN Trigger: ATTCGCTGGATTCAAGTAACCCAGAGTCAGAGACAAGGTCCTCTTTGGTTTCACCTCCCCATCTCCAGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CCA 90 bp | GCCTCCAGGGTAGGGTGCATAAGAAGAGCCTCTGTGGCTGAGAATATAGTTAGGTCTCGGAACTCCTCTTaGGGTATTTGCGCAAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: ASRVGCIRRASVAENIVRSRNSS*GICAKS Trigger: GCTTTTTGCGCAAATACCCCAAGAGGAGTTCCGAGA...CCTAACTATATTCTCAGCCACAGAGGCTCTTCTTATGCACCCTACCCTGGAGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| 3UTR CAA 72 bp | TATTTGGAGACAGAGAGAATGAGACTTGCTGTAGTTTaGAGGCGGGACAGTCTCTCCTTCAGCTACCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YLETERMRLAVV*RRDSLSFSYRF Trigger: GAAGCGGTAGCTGAAGGAGAGACTGTCCCGCCTCAAAACTACAGCAAGTCTCATTCTCTCTGTCTCCAAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CCA 90 bp | CAGCGAATCCACTTGATCCTGAACACTCAGTTGTCTTCTTCTTCCTCTGCTTTTAGCCGCCATAGCGTTTaGCCTGTTTTCTCAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: QRIHLILNTQLSSSSSAFSRHSV*PVFSSP Trigger: AGGACTTGAGAAAACAGGCCAAACGCTATGGCGGCT...AAAAGCAGAGGAAGAAGAAGACAACTGAGTGTTCAGGATCAAGTGGATTCGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR GCA 90 bp | GTGAAGTTTGGAAACCACAGACGTATAGGAATAAAGAACAAGTTTCTCTGGATTCTTCCAAGTCATCCTTaGCACGGAGCCCAGAGACCG | + |
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Preference number: 4 (lower is better) Translates to: VKFGNHRRIGIKNKFLWILPSHP*HGAQRP Trigger: CGGTCTCTGGGCTCCGTGGCAAGGATGACTTGGAAG...AATCCAGAGAAACTTGTTCTTTATTCCTATACGTCTGTGGTTTCCAAACTTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR GCA 90 bp | ACACAAGTCACCGTAAAACAATCTACACATTTCAGAACACATGAAGGGCTCTACCAGATTCTTTTCCGTTaGCAAAGCTGCTGGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: TQVTVKQSTHFRTHEGLYQILFR*QSCWRD Trigger: GTCTCTCCAGCAGCTTTGGCAACGGAAAAGAATCTG...GTAGAGCCCTTCATGTGTTCTGAAATGTGTAGATTGTTTTACGGTGACTTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS GCA 90 bp | AACCACCATAGCGCTTCTGGTTGTCCCACTTCAGCTTGGGGCGAATaGGCCGCAGGAAGCCCCCATAGCGTTTGTACAGGTCCTCATGCC | + |
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Preference number: 5 (lower is better) Translates to: NHHSASGCPTSAWGE*AAGSPHSVCTGPHA Trigger: GGCATGAGGACCTGTACAAACGCTATGGGGGCTTCCTGCGGCGCATTCGCCCCAAGCTGAAGTGGGACAACCAGAAGCGCTATGGTGGTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS TCA 90 bp | CATCTTCCAAGTCATCCTTGCCACGGAGCCCAGAGACCGTCAGGGTaGGAAAAGATGAGAAGCCCCGGCATGTCTCCCACTCCTCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: HLPSHPCHGAQRPSG*EKMRSPGMSPTPLR Trigger: CCTCAGAGGAGTGGGAGACATGCCGGGGCTTCTCATCTTTTCTCACCCTGACGGTCTCTGGGCTCCGTGGCAAGGATGACTTGGAAGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS GCA 90 bp | GCAAATCAGGGGGTTGATGGGACGGGGCCCATCCTGAATCCTCACTaGACACAGGGAGCACAGGGACAGGCAGTCCGCCATAACATTAGA | + |
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Preference number: 5 (lower is better) Translates to: ANQGVDGTGPILNPH*TQGAQGQAVRHNIR Trigger: TCTAATGTTATGGCGGACTGCCTGTCCCTGTGCTCCCTGTGTGCAGTGAGGATTCAGGATGGGCCCCGTCCCATCAACCCCCTGATTTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028883.12 ENSMUST00000130608.2 |
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| CDS TCA 90 bp | CTTCAGAATAGGTATTGGGGTTCTCCTGGGACCGCGTCACCACCTTaGACTGACGCCGCAGGAAACCACCATAGCGCTTCTGGTTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: LQNRYWGSPGTASPP*TDAAGNHHSASGCP Trigger: GGGACAACCAGAAGCGCTATGGTGGTTTCCTGCGGCGTCAGTTCAAGGTGGTGACGCGGTCCCAGGAGAACCCCAATACCTATTCTGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS GCA 90 bp | CTGTTTTCTCAAGTCCTCCTCATTAAAATGGAGCGTGCCCGCCTGTaGGGCTTCATCATTCATCCGGTCAGCACCCGCCAGCTCAGATTC | + |
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Preference number: 5 (lower is better) Translates to: LFSQVLLIKMERARL*GFIIHPVSTRQLRF Trigger: GAATCTGAGCTGGCGGGTGCTGACCGGATGAATGATGAAGCCGCACAGGCGGGCACGCTCCATTTTAATGAGGAGGACTTGAGAAAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS CCA 90 bp | GGAGTCGGCTTTTCTCCAGCTCCTTCAGGACGGGTTCCAAGAGCTTaGCTAGTGCACTGTAGCCTTCTTCCAAAGCAACCTCATCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: GVGFSPAPSGRVPRA*LVHCSLLPKQPHLP Trigger: TGGAAGATGAGGTTGCTTTGGAAGAAGGCTACAGTGCACTAGCCAAGCTCTTGGAACCCGTCCTGAAGGAGCTGGAGAAAAGCCGACTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CAA 90 bp | AGAAGTGTGATACTGATCGGTTTTAATGAGGGCTGTGGGAACTGGCCCAAATTCTTGTCCCACTTCAGCTaGGGGCGAATGCGCCGCAGG | + |
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Preference number: 5 (lower is better) Translates to: RSVILIGFNEGCGNWPKFLSHFS*GRMRRR Trigger: CCTGCGGCGCATTCGCCCCAAGCTGAAGTGGGACAA...GAATTTGGGCCAGTTCCCACAGCCCTCATTAAAACCGATCAGTATCACACTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CAA 90 bp | CATCATAAGCAAGGGGATTTCACCCTTGGGAAAGGTACTGCCCTAACCGGGGTCTCAGATTCTTTTCCGTaGCCAAAGCTGCTGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: HHKQGDFTLGKGTALTGVSDSFP*PKLLER Trigger: TCTCTCCAGCAGCTTTGGCAACGGAAAAGAATCTGA...GACCCCGGTTAGGGCAGTACCTTTCCCAAGGGTGAAATCCCCTTGCTTATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS-3UTR CAA 90 bp | CACATGAAGGGCTCTACAGGCTGTGACCTGTGTGTGGAGAGGGACACTCAAGATATCTCGGAACTCCTCTaGGGGTATTTGCGCAAAAAG | + |
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Preference number: 5 (lower is better) Translates to: HMKGSTGCDLCVERDTQDISELL*GYLRKK Trigger: CTTTTTGCGCAAATACCCCAAGAGGAGTTCCGAGAT...ATCTTGAGTGTCCCTCTCCACACACAGGTCACAGCCTGTAGAGCCCTTCATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS GCA 72 bp | GGGGTTGATGGGACGGGGCCCATCCTGAATCCTCACTaGACACAGGGAGCACAGGGACAGGCAGTCCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: GVDGTGPILNPH*TQGAQGQAVRH Trigger: ATGGCGGACTGCCTGTCCCTGTGCTCCCTGTGTGCAGTGAGGATTCAGGATGGGCCCCGTCCCATCAACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028883.12 ENSMUST00000130608.2 |
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| CDS CCA 72 bp | CATGTCTCCCACTCCTCTGAGGGCGGCACCAGGTCCTaGCACTCCAGGGAGCAAATCAGGGGGTTGATGGGA | + |
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Preference number: 6 (lower is better) Translates to: HVSHSSEGGTRS*HSREQIRGLMG Trigger: TCCCATCAACCCCCTGATTTGCTCCCTGGAGTGCCAGGACCTGGTGCCGCCCTCAGAGGAGTGGGAGACATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028883.12 ENSMUST00000130608.2 |
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| CDS TCA 72 bp | GAGCAAATCAGGGGGTTGATGGGACGGGGCCCATCCTaGATCCTCACTGCACACAGGGAGCACAGGGACAGG | + |
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Preference number: 6 (lower is better) Translates to: EQIRGLMGRGPS*ILTAHREHRDR Trigger: CCTGTCCCTGTGCTCCCTGTGTGCAGTGAGGATTCAGGATGGGCCCCGTCCCATCAACCCCCTGATTTGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028883.12 ENSMUST00000130608.2 |
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| CDS GCA 72 bp | AGCGCTTCTGGTTGTCCCACTTCAGCTTGGGGCGAATaGGCCGCAGGAAGCCCCCATAGCGTTTGTACAGGT | + |
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Preference number: 6 (lower is better) Translates to: SASGCPTSAWGE*AAGSPHSVCTG Trigger: ACCTGTACAAACGCTATGGGGGCTTCCTGCGGCGCATTCGCCCCAAGCTGAAGTGGGACAACCAGAAGCGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS CCA 72 bp | CCCCGTCCTCATCCCGGGCCATCTCGGAACTCCTCTTaGGGTATTTGCGCAAAAAGCCGCCATAGCGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: PRPHPGPSRNSS*GICAKSRHSVW Trigger: CCAAACGCTATGGCGGCTTTTTGCGCAAATACCCCAAGAGGAGTTCCGAGATGGCCCGGGATGAGGACGGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS CCA 72 bp | AACCACCATAGCGCTTCTGGTTGTCCCACTTCAGCTTaGGGCGAATGCGCCGCAGGAAGCCCCCATAGCGTT | + |
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Preference number: 6 (lower is better) Translates to: NHHSASGCPTSA*GECAAGSPHSV Trigger: AACGCTATGGGGGCTTCCTGCGGCGCATTCGCCCCAAGCTGAAGTGGGACAACCAGAAGCGCTATGGTGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS TCA 72 bp | AGTCATCCTTGCCACGGAGCCCAGAGACCGTCAGGGTaGGAAAAGATGAGAAGCCCCGGCATGTCTCCCACT | + |
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Preference number: 6 (lower is better) Translates to: SHPCHGAQRPSG*EKMRSPGMSPT Trigger: AGTGGGAGACATGCCGGGGCTTCTCATCTTTTCTCACCCTGACGGTCTCTGGGCTCCGTGGCAAGGATGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028883.12 ENSMUST00000130608.2 |
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| CDS TCA 72 bp | AGGTATTGGGGTTCTCCTGGGACCGCGTCACCACCTTaGACTGACGCCGCAGGAAACCACCATAGCGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RYWGSPGTASPP*TDAAGNHHSAS Trigger: AGAAGCGCTATGGTGGTTTCCTGCGGCGTCAGTTCAAGGTGGTGACGCGGTCCCAGGAGAACCCCAATACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS CCA 72 bp | TTTTCTCCAGCTCCTTCAGGACGGGTTCCAAGAGCTTaGCTAGTGCACTGTAGCCTTCTTCCAAAGCAACCT | + |
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Preference number: 6 (lower is better) Translates to: FSPAPSGRVPRA*LVHCSLLPKQP Trigger: AGGTTGCTTTGGAAGAAGGCTACAGTGCACTAGCCAAGCTCTTGGAACCCGTCCTGAAGGAGCTGGAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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| CDS CCA 72 bp | CGTTTGGCCTGTTTTCTCAAGTCCTCCTCATTAAAATaGAGCGTGCCCGCCTGTGCGGCTTCATCATTCATC | + |
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Preference number: 6 (lower is better) Translates to: RLACFLKSSSLK*SVPACAASSFI Trigger: GATGAATGATGAAGCCGCACAGGCGGGCACGCTCCATTTTAATGAGGAGGACTTGAGAAAACAGGCCAAACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028883.12 |
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