Pregenerated sensors for PDXP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000116165Ensembl transcript IDs: ENSMUST00000089378.5
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTCCAAGCCGAAAAAGCCATCAACACTGGACGGTGCTAAGGTATaGGTGGGAACCTCTCCACACTACCCCAGGGCCACAGAGGTGCCC | + |
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Preference number: 1 (lower is better) Translates to: PSKPKKPSTLDGAKV*VGTSPHYPRATEVP Trigger: GGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCAGTGTTGATGGCTTTTTCGGCTTGGAGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR GCA 90 bp | AGGTATGAGTGGGAACCTCTCCACACTACCCCAGGGCCACAGAGGTaGCCCACTGAGCAGTCTGTGGAGTGGGGTGACTTGAAGGATGAC | + |
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Preference number: 1 (lower is better) Translates to: RYEWEPLHTTPGPQR*PTEQSVEWGDLKDD Trigger: GTCATCCTTCAAGTCACCCCACTCCACAGACTGCTCAGTGGGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR TCA 90 bp | ACTGGGGTACAGACACCCACTCCAGAAAGCTCATGGTCCCGAATGTaGCTCATGGCCCGTCGCCTCCATCTGTGGGATCAGGGAACAACA | + |
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Preference number: 1 (lower is better) Translates to: TGVQTPTPESSWSRM*LMARRLHLWDQGTT Trigger: TGTTGTTCCCTGATCCCACAGATGGAGGCGACGGGCCATGAGTCACATTCGGGACCATGAGCTTTCTGGAGTGGGTGTCTGTACCCCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR CAA 90 bp | GGGCCACAGAGGTGCCCCACTGAGCAGTCTGTGGAGTGGGGTGACTaGAAGGATGACCCTCTGTCTGAGATGAGGTCTGACTCTGCCATC | + |
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Preference number: 2 (lower is better) Translates to: GPQRCPTEQSVEWGD*KDDPLSEMRSDSAI Trigger: GATGGCAGAGTCAGACCTCATCTCAGACAGAGGGTCATCCTTCAAGTCACCCCACTCCACAGACTGCTCAGTGGGGCACCTCTGTGGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR CCA 90 bp | TGGACGGTGCTAAGGTATGAGTGGGAACCTCTCCACACTACCCCAGGGCCACAGCGCATAGCCTCTGACTaGTGCTCTGGGGTTCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: WTVLRYEWEPLHTTPGPQRIASD*CSGVPG Trigger: TCCTGGAACCCCAGAGCACCAGTCAGAGGCTATGCG...CTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGGATGACCCTCTGTCTGAGATGAGGTCTGACTCTGCCATCCCGGTCACCTGGACGCATAGCCTCTaGCTGGTGCTCTGGGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: LKDDPLSEMRSDSAIPVTWTHSL*LVLWGS Trigger: GGAACCCCAGAGCACCAGTCAGAGGCTATGCGTCCA...GGTGACCGGGATGGCAGAGTCAGACCTCATCTCAGACAGAGGGTCATCCTTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR GCA 90 bp | GAACCTCTCCACACTACCCCAGGGCCACAGAGGTGCCCCACTGAGCAGTCTGTGACTCAGCAATCCTCTTaGTTCAACCTCCCGAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: EPLHTTPGPQRCPTEQSVTQQSS*FNLPSA Trigger: AGCACTCGGGAGGTTGAAGCAAGAGGATTGCTGAGT...CACAGACTGCTCAGTGGGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR CCA 90 bp | TGGACGGTGCTAAGGTATGAGTGGGAACCTCTCCACACTACCCCAGGGCCACAGTGTGCTACCAGCATCTaGTCCCAGGATCCAGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: WTVLRYEWEPLHTTPGPQCATSI*SQDPVR Trigger: CCTGACTGGATCCTGGGACCAGATGCTGGTAGCACA...CTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR CCA 90 bp | TTGAAGGATGACCCTCTGTCTGAGATGAGGTCTGACTCTGCCATCCCGGTCACCAATAAGGCCACCTGGTaGGGTCAGGCCAGGGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: LKDDPLSEMRSDSAIPVTNKATW*GQARVN Trigger: GTTCACCCTGGCCTGACCCCACCAGGTGGCCTTATT...GGTGACCGGGATGGCAGAGTCAGACCTCATCTCAGACAGAGGGTCATCCTTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTCACAAGTCTCTTGGACTTGGAAATTGTTCTAATTGGCATCTAAGAGGCTGGGGTTCCAGGATATaGAAGGCATTCTTTAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: KVHKSLGLGNCSNWHLRGWGSRI*KAFFKL Trigger: GAGCTTAAAGAATGCCTTGCATATCCTGGAACCCCA...GCCTCTTAGATGCCAATTAGAACAATTTCCAAGTCCAAGAGACTTGTGAACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR GCA 72 bp | TGGGAACCTCTCCACACTACCCCAGGGCCACAGAGGTaGCCCACTGAGCAGTCTGTGGAGTGGGGTGACTTG | + |
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Preference number: 3 (lower is better) Translates to: WEPLHTTPGPQR*PTEQSVEWGDL Trigger: CAAGTCACCCCACTCCACAGACTGCTCAGTGGGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR CCA 72 bp | AAGGGAGGTGACAGGGCAGGAAATAAGGCCACCTGGTaGGGTCAGGCCAGGGTGAACCTTCAAGATGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KGGDRAGNKATW*GQARVNLQDVG Trigger: CCCCACATCTTGAAGGTTCACCCTGGCCTGACCCCACCAGGTGGCCTTATTTCCTGCCCTGTCACCTCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR CCA 72 bp | GCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTaGGGTACAGACACCCACTCCAGAAAGCTCATGGTC | + |
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Preference number: 3 (lower is better) Translates to: AHKPSWIPASLH*GTDTHSRKLMV Trigger: GACCATGAGCTTTCTGGAGTGGGTGTCTGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR TCA 72 bp | CCGAAAAAGCCATCAACACTGGACGGTGCTAAGGTATaGGTGGGAACCTCTCCACACTACCCCAGGGCCACA | + |
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Preference number: 3 (lower is better) Translates to: PKKPSTLDGAKV*VGTSPHYPRAT Trigger: TGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCAGTGTTGATGGCTTTTTCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR GCA 72 bp | TCCCGAGTGCTATACATACCGGCATTCATCACCCTGTaGTACCAGCATCTGGTCCCAGGATCCAGTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: SRVLYIPAFITL*YQHLVPGSSQA Trigger: AGCCTGACTGGATCCTGGGACCAGATGCTGGTAGCACAGGGTGATGAATGCCGGTATGTATAGCACTCGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR CCA 72 bp | AAAAGCCATCAACACTGGACGGTGCTAAGGTATGAGTaGGAACCTCTCCACACTACCCCAGGGCCACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: KSHQHWTVLRYE*EPLHTTPGPQR Trigger: CCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCAGTGTTGATGGCTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR-3UTR CAA 90 bp | TGGACGGTGCTAAGGTATGAGTGGGAACCTCTCCACACTACCCCAGGGCCACAGAAGTTCACAAGTCTCTaGGACTTGGAAATTGTTCTA | + |
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Preference number: 3 (lower is better) Translates to: WTVLRYEWEPLHTTPGPQKFTSL*DLEIVL Trigger: TAGAACAATTTCCAAGTCCAAGAGACTTGTGAACTT...CTGTGGCCCTGGGGTAGTGTGGAGAGGTTCCCACTCATACCTTAGCACCGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR GCA 90 bp | AGTGCCAGCAGCTCTTCCCAGAGGCCTGGTCAGGCCAGGAACGGGCTGGAGTTCTCGGGGTCGCGCAGGTaGGCGCACGCCTCGGTCAAC | + |
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Preference number: 4 (lower is better) Translates to: SASSSSQRPGQARNGLEFSGSRR*AHASVN Trigger: GTTGACCGAGGCGTGCGCGCACCTGCGCGACCCCGA...GAACTCCAGCCCGTTCCTGGCCTGACCAGGCCTCTGGGAAGAGCTGCTGGCACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CCA 90 bp | GAACCTCTCCACACTACCCCAGGGCCACAGAGGTGCCCCACTGAGCAGTCTGTGAGGACTCCCTGCGCCTaGCCCAGCACGTCGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: EPLHTTPGPQRCPTEQSVRTPCA*PSTSRR Trigger: CCTGCGCGACGTGCTGGGCCAGGCGCAGGGAGTCCT...CACAGACTGCTCAGTGGGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR GCA 90 bp | GGTGTGAAAGCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTGGGGTACAGCGGAGCTGAAGAGCTaGTCGGCGCGCAGCCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: GVKAHKPSWIPASLHWGTAELKS*SARSPA Trigger: CGCGGGGCTGCGCGCCGAGCAGCTCTTCAGCTCCGC...TGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGCTTTCACACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CCA 90 bp | ATCCCAGCCTCCCTTCACTGGGGTACAGACACCCACTCCAGAAAGCTCATGGTCCCCACCACCAGGGCCTaGCGTCCCGAGGCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: IPASLHWGTDTHSRKLMVPTTRA*RPEAVS Trigger: GGAGACAGCCTCGGGACGCCAGGCCCTGGTGGTGGG...GACCATGAGCTTTCTGGAGTGGGTGTCTGTACCCCAGTGAAGGGAGGCTGGGAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR TCA 90 bp | GGTGTGAAAGCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTGGGGTACACACACAGCGCGGAGCTaGAGAGCTGCTCGGCGCGCA | + |
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Preference number: 4 (lower is better) Translates to: GVKAHKPSWIPASLHWGTHTARS*RAARRA Trigger: TGCGCGCCGAGCAGCTCTTCAGCTCCGCGCTGTGTG...TGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGCTTTCACACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR GCA 90 bp | GGTCCCGAATGTGACTCATGGCCCGTCGCCTCCATCTGTGGGATCAGGGAACAATCGAACAGGACTCCCTaGGCCTGGCCCAGCACGTCG | + |
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Preference number: 4 (lower is better) Translates to: GPECDSWPVASICGIREQSNRTP*AWPSTS Trigger: CGACGTGCTGGGCCAGGCGCAGGGAGTCCTGTTCGA...TTGTTCCCTGATCCCACAGATGGAGGCGACGGGCCATGAGTCACATTCGGGACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR GCA 90 bp | GGTGTGAAAGCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTGGGGTACAGGGCGCCCGGCACGATaGGTTCGCCGTTCCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: GVKAHKPSWIPASLHWGTGRPAR*VRRSTA Trigger: TGCTGTGGAACGGCGAACGCATCGTGCCGGGCGCCC...TGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGCTTTCACACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CCA 90 bp | GAACCTCTCCACACTACCCCAGGGCCACAGAGGTGCCCCACTGAGCAGTCTGTGACGCCTCGGTCAACCTaGAGAAGGAAAACTGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: EPLHTTPGPQRCPTEQSVTPRST*RRKTAR Trigger: ACGAGCAGTTTTCCTTCTCCAGGTTGACCGAGGCGT...CACAGACTGCTCAGTGGGGCACCTCTGTGGCCCTGGGGTAGTGTGGAGAGGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CCA 90 bp | GGTGTGAAAGCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTGGGGTACAGGAACATGTAAGGGCTaGGCTTGCCCACCACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GVKAHKPSWIPASLHWGTGTCKG*ACPPPG Trigger: CCCTGGTGGTGGGCAAGCCCAGCCCTTACATGTTCC...TGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGCTTTCACACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR GCA 90 bp | ATCCCAGCCTCCCTTCACTGGGGTACAGACACCCACTCCAGAAAGCTCATGGTCCGCGCCGGCTGTTGTTaGTCACGAACAGCGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: IPASLHWGTDTHSRKLMVRAGCC*SRTACS Trigger: AGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCG...GACCATGAGCTTTCTGGAGTGGGTGTCTGTACCCCAGTGAAGGGAGGCTGGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CCA 90 bp | AAAGTTCACAAGTCTCTTGGACTTGGAAATTGTTCTAATTGGCATCTAAGAGGCGTCATGCCGCAGCGGTaGCCAAAGAGTATGTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: KVHKSLGLGNCSNWHLRGVMPQR*PKSMSV Trigger: GACCGACATACTCTTTGGCCACCGCTGCGGCATGAC...GCCTCTTAGATGCCAATTAGAACAATTTCCAAGTCCAAGAGACTTGTGAACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| 3UTR CAA 72 bp | ACCAGCATCTGGTCCCAGGATCCAGTCAGGCTAGGATaGTCAAAAGTTCACAAGTCTCTTGGACTTGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: TSIWSQDPVRLG*SKVHKSLGLGN Trigger: ATTTCCAAGTCCAAGAGACTTGTGAACTTTTGACAATCCTAGCCTGACTGGATCCTGGGACCAGATGCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 90 bp | CTCAGCGCGCAGCCCCTCGCCTCCCAGCACGAACACTGCGCCCGATaGGTCGGGCGGCCCGGACAGCCGCTGGCGCAGGAGGCGCGCGGC | + |
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Preference number: 5 (lower is better) Translates to: LSAQPLASQHEHCAR*VGRPGQPLAQEARG Trigger: GCCGCGCGCCTCCTGCGCCAGCGGCTGTCCGGGCCGCCCGACGCATCGGGCGCAGTGTTCGTGCTGGGAGGCGAGGGGCTGCGCGCTGAG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS TCA 90 bp | CGGACAGCCGCTGGCGCAGGAGGCGCGCGGCACACAGCGCGGAGCTaGAGAGCTGCTCGGCGCGCAGCCCCGCGAAGCCCAGGCGGGCGA | + |
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Preference number: 5 (lower is better) Translates to: RTAAGAGGARHTARS*RAARRAAPRSPGGR Trigger: TCGCCCGCCTGGGCTTCGCGGGGCTGCGCGCCGAGCAGCTCTTCAGCTCCGCGCTGTGTGCCGCGCGCCTCCTGCGCCAGCGGCTGTCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 90 bp | CGCTGGCGCAGGAGGCGCGCGGCACACAGCGCGGAGCTGAAGAGCTaGTCGGCGCGCAGCCCCGCGAAGCCCAGGCGGGCGAAGCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RWRRRRAAHSAELKS*SARSPAKPRRAKRS Trigger: GCTGCGCTTCGCCCGCCTGGGCTTCGCGGGGCTGCGCGCCGAGCAGCTCTTCAGCTCCGCGCTGTGTGCCGCGCGCCTCCTGCGCCAGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 90 bp | CGGGCCGCGCGCGCCGGCTGTTGTTGCTCACGAACAGCGTGTTCTTaGCGGCCCGCGCCAGCCGCTGCAGCAGCTCAGGGGCGCCCGGCA | + |
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Preference number: 5 (lower is better) Translates to: RAARAGCCCSRTACS*RPAPAAAAAQGRPA Trigger: TGCCGGGCGCCCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CCA 90 bp | AGCACGAACACTGCGCCCGATGCGTCGGGCGGCCCGGACAGCCGCTaGCGCAGGAGGCGCGCGGCACACAGCGCGGAGCTGAAGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: STNTAPDASGGPDSR*RRRRAAHSAELKSC Trigger: GCAGCTCTTCAGCTCCGCGCTGTGTGCCGCGCGCCTCCTGCGCCAGCGGCTGTCCGGGCCGCCCGACGCATCGGGCGCAGTGTTCGTGCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS TCA 90 bp | CCGCGGCAGCCAGGCTTCCAGTACCGGGGGTCCGGCTTCCGTCGCTaGGCGGGTGCCAAGGGTCGCGATCGGTGGCCACGAGCAGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: PRQPGFQYRGSGFRR*AGAKGRDRWPRAGS Trigger: ACTGCCTGCTCGTGGCCACCGATCGCGACCCTTGGCACCCGCTCAGCGACGGAAGCCGGACCCCCGGTACTGGAAGCCTGGCTGCCGCGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 90 bp | GCCAGGCTTCCAGTACCGGGGGTCCGGCTTCCGTCGCTGAGCGGGTaGCAAGGGTCGCGATCGGTGGCCACGAGCAGGCAGTCGGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: ARLPVPGVRLPSLSG*QGSRSVATSRQSGS Trigger: CGACCCCGACTGCCTGCTCGTGGCCACCGATCGCGACCCTTGGCACCCGCTCAGCGACGGAAGCCGGACCCCCGGTACTGGAAGCCTGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 90 bp | TTGTTGCTCACGAACAGCGTGTTCTTGCCGGCCCGCGCCAGCCGCTaGAGCAGCTCAGGGGCGCCCGGCACGATGCGTTCGCCGTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: LLLTNSVFLPARASR*SSSGAPGTMRSPFH Trigger: GTGGAACGGCGAACGCATCGTGCCGGGCGCCCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CCA 90 bp | GCAGGCAGTCGGGGTCGCGCAGGTGCGCGCACGCCTCGGTCAACCTaGAGAAGGAAAACTGCTCGTCGTAGCCTACGAGCACGGCGCGCA | + |
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Preference number: 5 (lower is better) Translates to: AGSRGRAGARTPRST*RRKTARRSLRARRA Trigger: TGCGCGCCGTGCTCGTAGGCTACGACGAGCAGTTTTCCTTCTCCAGGTTGACCGAGGCGTGCGCGCACCTGCGCGACCCCGACTGCCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CAA 90 bp | GCCGGCAGTGCCAGCAGCTCTTCCCAGAGGCCTGGTCAGGCCAGGAACGGGCTGGCGCGCCGGCTGTTGTaGCTCACGAACAGCGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: AGSASSSSQRPGQARNGLARRLL*LTNSVF Trigger: GAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGC...CAGCCCGTTCCTGGCCTGACCAGGCCTCTGGGAAGAGCTGCTGGCACTGCCGGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CAA 90 bp | GATGACCCTCTGTCTGAGATGAGGTCTGACTCTGCCATCCCGGTCACCAGACTCACGAACAGCGTGTTCTaGCCGGCCCGCGCCAGCCGC | + |
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Preference number: 5 (lower is better) Translates to: DDPLSEMRSDSAIPVTRLTNSVF*PARASR Trigger: GCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGT...GAGTCTGGTGACCGGGATGGCAGAGTCAGACCTCATCTCAGACAGAGGGTCATC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS-3UTR CAA 90 bp | GGTGTGAAAGCCCACAAACCTTCCTGGATCCCAGCCTCCCTTCACTGGGGTACACGCGCGCGCCGGCTGTaGTTGCTCACGAACAGCGTG | + |
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Preference number: 5 (lower is better) Translates to: GVKAHKPSWIPASLHWGTRARRL*LLTNSV Trigger: CACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCG...TGTACCCCAGTGAAGGGAGGCTGGGATCCAGGAAGGTTTGTGGGCTTTCACACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CCA 72 bp | ACTGCGCCCGATGCGTCGGGCGGCCCGGACAGCCGCTaGCGCAGGAGGCGCGCGGCACACAGCGCGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: TAPDASGGPDSR*RRRRAAHSAEL Trigger: CAGCTCCGCGCTGTGTGCCGCGCGCCTCCTGCGCCAGCGGCTGTCCGGGCCGCCCGACGCATCGGGCGCAGT 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CAA 90 bp | TCGGGCCGCGCGCGCCGGCTGTTGTTGCTCACGAACAGCGTGTTCTaGCCGGCCCGCGCCAGCCGCTGCAGCAGCTCAGGGGCGCCCGGC | + |
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Preference number: 6 (lower is better) Translates to: SGRARRLLLLTNSVF*PARASRCSSSGAPG Trigger: GCCGGGCGCCCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS TCA 72 bp | GCTGGCGCAGGAGGCGCGCGGCACACAGCGCGGAGCTaGAGAGCTGCTCGGCGCGCAGCCCCGCGAAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: AGAGGARHTARS*RAARRAAPRSP Trigger: TGGGCTTCGCGGGGCTGCGCGCCGAGCAGCTCTTCAGCTCCGCGCTGTGTGCCGCGCGCCTCCTGCGCCAGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CAA 72 bp | CGCAGCGCCAGCTCGGGCCGCGCGCGCCGGCTGTTGTaGCTCACGAACAGCGTGTTCTTGCCGGCCCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: RSASSGRARRLL*LTNSVFLPARA Trigger: GGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCGAGCTGGCGCTGCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 72 bp | GCAGCGCCAGCTCGGGCCGCGCGCGCCGGCTGTTGTTaGTCACGAACAGCGTGTTCTTGCCGGCCCGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: AAPARAARAGCC*SRTACSCRPAP Trigger: TGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCGAGCTGGCGCTGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 72 bp | ACGAACAGCGTGTTCTTGCCGGCCCGCGCCAGCCGCTaGAGCAGCTCAGGGGCGCCCGGCACGATGCGTTCG | + |
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Preference number: 6 (lower is better) Translates to: TNSVFLPARASR*SSSGAPGTMRS Trigger: CGAACGCATCGTGCCGGGCGCCCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 72 bp | CCAGTACCGGGGGTCCGGCTTCCGTCGCTGAGCGGGTaGCAAGGGTCGCGATCGGTGGCCACGAGCAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PVPGVRLPSLSG*QGSRSVATSRQ Trigger: CTGCCTGCTCGTGGCCACCGATCGCGACCCTTGGCACCCGCTCAGCGACGGAAGCCGGACCCCCGGTACTGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CAA 72 bp | AAGCGCAGCGCCAGCTCGGGCCGCGCGCGCCGGCTGTaGTTGCTCACGAACAGCGTGTTCTTGCCGGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: KRSASSGRARRL*LLTNSVFLPAR Trigger: GCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGCGCGGCCCGAGCTGGCGCTGCGCTT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS TCA 72 bp | CCAGGCTTCCAGTACCGGGGGTCCGGCTTCCGTCGCTaGGCGGGTGCCAAGGGTCGCGATCGGTGGCCACGA | + |
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Preference number: 6 (lower is better) Translates to: PGFQYRGSGFRR*AGAKGRDRWPR Trigger: TCGTGGCCACCGATCGCGACCCTTGGCACCCGCTCAGCGACGGAAGCCGGACCCCCGGTACTGGAAGCCTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS GCA 72 bp | CGCGCCGGCTGTTGTTGCTCACGAACAGCGTGTTCTTaGCGGCCCGCGCCAGCCGCTGCAGCAGCTCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: RAGCCCSRTACS*RPAPAAAAAQG Trigger: CCCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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| CDS CAA 72 bp | GCGCGCCGGCTGTTGTTGCTCACGAACAGCGTGTTCTaGCCGGCCCGCGCCAGCCGCTGCAGCAGCTCAGGG | + |
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Preference number: 6 (lower is better) Translates to: ARRLLLLTNSVF*PARASRCSSSG Trigger: CCCTGAGCTGCTGCAGCGGCTGGCGCGGGCCGGCAAGAACACGCTGTTCGTGAGCAACAACAGCCGGCGCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089378.5 |
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