RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029644

Ensembl transcript IDs: ENSMUST00000085591.7

Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGAAGTCTGCCAGCATCTCTCCGGCTATACCCAACTGGCTCTCGTaGCCTCAAGAATTTTCTTCTTGTGCGACGCCTAGGTTAAGTTCC +
Preference number: 1 (lower is better)
Translates to: QKSASISPAIPNWLS*PQEFSSCATPRLSS
Trigger: GGAACTTAACCTAGGCGTCGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATGCTGGCAGACTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CCA 90 bp CTGTTTTTCCAGAAGTCTGCCAGCATCTCTCCGGCTATACCCAACTaGCTCTCGTGCCCTCAAGAATTTTCTTCTTGTGCGACGCCTAGG +
Preference number: 1 (lower is better)
Translates to: LFFQKSASISPAIPN*LSCPQEFSSCATPR
Trigger: CCTAGGCGTCGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATGCTGGCAGACTTCTGGAAAAACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR GCA 90 bp CAGGAGGATATTCGCGCTCTAAAACAGAAACTTCAAATGTCCTTCTaGATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTAGGGGCACG +
Preference number: 1 (lower is better)
Translates to: QEDIRALKQKLQMSF*IFVPQDPGGPIRGT
Trigger: CGTGCCCCTAATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTTCTGTTTTAGAGCGCGAATATCCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CCA 90 bp CGTATTGGAACGCTCAAGTTTGTACCCTTTTTATTGTCCTCAGTTTaGAGCCCAGGTTGTCTAAATTGGTCCCAGGAAAGAGTCCTAGAG +
Preference number: 1 (lower is better)
Translates to: RIGTLKFVPFLLSSV*SPGCLNWSQERVLE
Trigger: CTCTAGGACTCTTTCCTGGGACCAATTTAGACAACCTGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAACTTGAGCGTTCCAATACG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CAA 90 bp AATTGGTCCCAGGAAAGAGTCCTAGAGGCAGATCTGGCCATTCGCTaGGCATCAGAAGCAGCCTCAAAGTTTTCAGAAGCTCAGGGCTGT +
Preference number: 2 (lower is better)
Translates to: NWSQERVLEADLAIR*ASEAASKFSEAQGC
Trigger: ACAGCCCTGAGCTTCTGAAAACTTTGAGGCTGCTTCTGATGCCAAGCGAATGGCCAGATCTGCCTCTAGGACTCTTTCCTGGGACCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CAA 90 bp GCTCAAGTTTGTACCCTTTTTATTGTCCTCAGTTTGGAGCCCAGGTaGTCTAAATTGGTCCCAGGAAAGAGTCCTAGAGGCAGATCTGGC +
Preference number: 2 (lower is better)
Translates to: AQVCTLFIVLSLEPR*SKLVPGKSPRGRSG
Trigger: GCCAGATCTGCCTCTAGGACTCTTTCCTGGGACCAATTTAGACAACCTGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAACTTGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR-3UTR GCA 90 bp AAACTTCAAATGTCCTTCTGCATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTGTTTTTCCAGAAGTCTaGCAGCATCTCTCCGGCTAT +
Preference number: 2 (lower is better)
Translates to: KLQMSFCIFVPQDPGGPIVFPEV*QHLSGY
Trigger: ATAGCCGGAGAGATGCTGGCAGACTTCTGGAAAAAC...AATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CAA 90 bp CCGTATTGGAACGCTCAAGTTTGTACCCTTTTTATTGTCCTCAGTTaGGAGCCCAGGTTGTCTAAATTGGTCCCAGGAAAGAGTCCTAGA +
Preference number: 2 (lower is better)
Translates to: PYWNAQVCTLFIVLS*EPRLSKLVPGKSPR
Trigger: TCTAGGACTCTTTCCTGGGACCAATTTAGACAACCTGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAACTTGAGCGTTCCAATACGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR GCA 72 bp GCCAGCATCTCTCCGGCTATACCCAACTGGCTCTCGTaGCCTCAAGAATTTTCTTCTTGTGCGACGCCTAGG +
Preference number: 3 (lower is better)
Translates to: ASISPAIPNWLS*PQEFSSCATPR
Trigger: CCTAGGCGTCGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATGCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CCA 72 bp CAGAAGTCTGCCAGCATCTCTCCGGCTATACCCAACTaGCTCTCGTGCCCTCAAGAATTTTCTTCTTGTGCG +
Preference number: 3 (lower is better)
Translates to: QKSASISPAIPN*LSCPQEFSSCA
Trigger: CGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATGCTGGCAGACTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR GCA 72 bp TCCAACAGCCGCCTTTCGTTATTCTTAACCTTAGCTTaGTCAGCCGTTCTGTTTCTGGGCAGACAAAGGCAC +
Preference number: 3 (lower is better)
Translates to: SNSRLSLFLTLA*SAVLFLGRQRH
Trigger: GTGCCTTTGTCTGCCCAGAAACAGAACGGCTGAGCAAGCTAAGGTTAAGAATAACGAAAGGCGGCTGTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR-3UTR CAA 90 bp ATTGGAAGAAGCGCTCTCTTTGAAACCTCCAACAGCCGCCTTTCGTTATTCTTACCCAGGTTGTCTAAATaGGTCCCAGGAAAGAGTCCT +
Preference number: 3 (lower is better)
Translates to: IGRSALFETSNSRLSLFLPRLSK*VPGKSP
Trigger: AGGACTCTTTCCTGGGACCAATTTAGACAACCTGGG...TAAGAATAACGAAAGGCGGCTGTTGGAGGTTTCAAAGAGAGCGCTTCTTCCAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR-3UTR CAA 90 bp AAACTTCAAATGTCCTTCTGCATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTTTTGTACCCTTTTTATaGTCCTCAGTTTGGAGCCCA +
Preference number: 3 (lower is better)
Translates to: KLQMSFCIFVPQDPGGPIFVPFL*SSVWSP
Trigger: TGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAA...AATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CCA 72 bp ACGCTCAAGTTTGTACCCTTTTTATTGTCCTCAGTTTaGAGCCCAGGTTGTCTAAATTGGTCCCAGGAAAGA +
Preference number: 3 (lower is better)
Translates to: TLKFVPFLLSSV*SPGCLNWSQER
Trigger: TCTTTCCTGGGACCAATTTAGACAACCTGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAACTTGAGCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR TCA 90 bp GTTCCCTTATCCAGCTGCCCGCTCCCACGTCCACACTCTGGGTCCCAGACCCGCTGGGCGAGCCCGAGCTaGGCTGGAAGGTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VPLSSCPLPRPHSGSQTRWASPS*AGRWWW
Trigger: CCACCACCACCTTCCAGCTCAGCTCGGGCTCGCCCA...GCGGGTCTGGGACCCAGAGTGTGGACGTGGGAGCGGGCAGCTGGATAAGGGAAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp CGCTCCCACGTCCACACTCTGGGTCCCAGACCCGCTCACCCTCAGACTGCTGTCCACGGGAAAGGGAGCTaGACGCGGTTGGGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: RSHVHTLGPRPAHPQTAVHGKGS*TRLGSS
Trigger: GGAAGAGCCCAACCGCGTCCAGCTCCCTTTCCCGTG...GACAGCAGTCTGAGGGTGAGCGGGTCTGGGACCCAGAGTGTGGACGTGGGAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR TCA 90 bp CAGGAAAGAGTCCTAGAGGCAGATCTGGCCATTCGCTTGGCATCAGAAGCAGCCAGGTGGTGGTGGAGGTaGGCGCCAGCCGGGTCGTCG +
Preference number: 4 (lower is better)
Translates to: QERVLEADLAIRLASEAARWWWR*APAGSS
Trigger: CGACGACCCGGCTGGCGCTCACCTCCACCACCACCT...GGCTGCTTCTGATGCCAAGCGAATGGCCAGATCTGCCTCTAGGACTCTTTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp GTTCCCTTATCCAGCTGCCCGCTCCCACGTCCACACTCTGGGTCCCAGACCCGCTCCACGCGTGAGCTTTaGTGGATTTCATCCACGGGA +
Preference number: 4 (lower is better)
Translates to: VPLSSCPLPRPHSGSQTRSTREL*WISSTG
Trigger: TCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGA...GCGGGTCTGGGACCCAGAGTGTGGACGTGGGAGCGGGCAGCTGGATAAGGGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR GCA 90 bp CAGGAAAGAGTCCTAGAGGCAGATCTGGCCATTCGCTTGGCATCAGAAGCAGCCGTCGCAGTGGCGCGATaGTGGAGGGCTGTGGCGACA +
Preference number: 4 (lower is better)
Translates to: QERVLEADLAIRLASEAAVAVAR*WRAVAT
Trigger: TGTCGCCACAGCCCTCCAGCATCGCGCCACTGCGAC...GGCTGCTTCTGATGCCAAGCGAATGGCCAGATCTGCCTCTAGGACTCTTTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp AAACTTCAAATGTCCTTCTGCATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTGGGTGGCGGCGGAGGTaGGGGCTGGCGGCCCATGTA +
Preference number: 4 (lower is better)
Translates to: KLQMSFCIFVPQDPGGPIGWRRR*GLAAHV
Trigger: TACATGGGCCGCCAGCCCCCACCTCCGCCGCCACCC...AATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp AGTTCCCTTATCCAGCTGCCCGCTCCCACGTCCACACTCTGGGTCCCAGACCCGACGCGTGAGCTTTGGTaGATTTCATCCACGGGAAAG +
Preference number: 4 (lower is better)
Translates to: SSLIQLPAPTSTLWVPDPTRELW*ISSTGK
Trigger: CTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGT...CGGGTCTGGGACCCAGAGTGTGGACGTGGGAGCGGGCAGCTGGATAAGGGAACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp AAACTTCAAATGTCCTTCTGCATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTTGCAGCTGGGACGCCTaGGGGCACGGCACCTCCGGG +
Preference number: 4 (lower is better)
Translates to: KLQMSFCIFVPQDPGGPICSWDA*GHGTSG
Trigger: CCCGGAGGTGCCGTGCCCCCAGGCGTCCCAGCTGCA...AATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp AAACTTCAAATGTCCTTCTGCATCTTTGTCCCTCAGGACCCTGGAGGTCCCATTGGCGGAGGTGGGGGCTaGCGGCCCATGTACAGGCAC +
Preference number: 4 (lower is better)
Translates to: KLQMSFCIFVPQDPGGPIGGGGG*RPMYRH
Trigger: GTGCCTGTACATGGGCCGCCAGCCCCCACCTCCGCC...AATGGGACCTCCAGGGTCCTGAGGGACAAAGATGCAGAAGGACATTTGAAGTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp CTATACCCAACTGGCTCTCGTGCCCTCAAGAATTTTCTTCTTGTGCGACGCCTAGCAGTGGCGCGATGCTaGAGGGCTGTGGCGACACGC +
Preference number: 4 (lower is better)
Translates to: LYPTGSRALKNFLLVRRLAVARC*RAVATR
Trigger: GCGTGTCGCCACAGCCCTCCAGCATCGCGCCACTGC...TAGGCGTCGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp TTTCCAAGGTGTACCAGGGCACCTGCCTTCCTTTCAGGAGGATATTCGCGCTCTGTTAGCGCTGAACTCTaGCACCGGGCCCCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: FPRCTRAPAFLSGGYSRSVSAEL*HRAPLE
Trigger: TTCCAGAGGGGCCCGGTGCCAGAGTTCAGCGCTAAC...AGAGCGCGAATATCCTCCTGAAAGGAAGGCAGGTGCCCTGGTACACCTTGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp CCTCTCTCCCATCTTCTAATTCAGGGCGTTGTGACTAGTTTTCCAAGGTGTACCGGAGCTGGACGCGGTTaGGCTCTTCCAGGCCCCCAG +
Preference number: 4 (lower is better)
Translates to: PLSHLLIQGVVTSFPRCTGAGRG*ALPGPQ
Trigger: CTGGGGGCCTGGAAGAGCCCAACCGCGTCCAGCTCC...GGTACACCTTGGAAAACTAGTCACAACGCCCTGAATTAGAAGATGGGAGAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR GCA 90 bp TGGCCATTCGCTTGGCATCAGAAGCAGCCTCAAAGTTTTCAGAAGCTCAGGGCTCAAGTTCAACATCACTaGCAGCTCCACCCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: WPFAWHQKQPQSFQKLRAQVQHH*QLHPAG
Trigger: CCCCGCCGGGTGGAGCTGGCAGTGATGTTGAACTTG...AGCCCTGAGCTTCTGAAAACTTTGAGGCTGCTTCTGATGCCAAGCGAATGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR GCA 90 bp CTAGGAAGGTTTGAAATCAGCCAGGTTGCCTTCAACCCCTCTCTTGCTATTCATTGGCAGCGGTGGCACTaGCAGCAGCTCCTCGCCCGA +
Preference number: 4 (lower is better)
Translates to: LGRFEISQVAFNPSLAIHWQRWH*QQLLAR
Trigger: TCGGGCGAGGAGCTGCTGGCAGTGCCACCGCTGCCA...ATGAATAGCAAGAGAGGGGTTGAAGGCAACCTGGCTGATTTCAAACCTTCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR GCA 90 bp CATCTCTCCGGCTATACCCAACTGGCTCTCGTGCCCTCAAGAATTTTCTTCTTGTCCGGAGGACTTCCCTaGTCCAGTGATCCCAGCGAG +
Preference number: 4 (lower is better)
Translates to: HLSGYTQLALVPSRIFFLSGGLP*SSDPSE
Trigger: CTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGA...CAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR GCA 90 bp TCTCCGGCTATACCCAACTGGCTCTCGTGCCCTCAAGAATTTTCTTCTTGTGCGTGTGTAAGCACCTCCTaGCCACTGGCCTTTCCACGC +
Preference number: 4 (lower is better)
Translates to: SPAIPNWLSCPQEFSSCACVSTS*PLAFPR
Trigger: GCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTACACA...CGCACAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp TTCGCTTGGCATCAGAAGCAGCCTCAAAGTTTTCAGAAGCTCAGGGCTGTTTTTTTCCTGCGGTCGCAGTaGCGCGATGCTGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: FAWHQKQPQSFQKLRAVFFLRSQ*RDAGGL
Trigger: CAGCCCTCCAGCATCGCGCCACTGCGACCGCAGGAA...AAAAACAGCCCTGAGCTTCTGAAAACTTTGAGGCTGCTTCTGATGCCAAGCGAA
54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR TCA 90 bp CTCAGGGCTGTTTTTCCAGAAGTCTGCCAGCATCTCTCCGGCTATACCCAACTGTGGCCTTTCCACGCGTaGGCTTTGGTGGATTTCATC +
Preference number: 4 (lower is better)
Translates to: LRAVFPEVCQHLSGYTQLWPFHA*ALVDFI
Trigger: GATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCA...CAGTTGGGTATAGCCGGAGAGATGCTGGCAGACTTCTGGAAAAACAGCCCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp ATTGGAAGAAGCGCTCTCTTTGAAACCTCCAACAGCCGCCTTTCGTTATTCTTAAGCGAGCTTGTAAACTaGGGTGGCGGCGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: IGRSALFETSNSRLSLFLSELVN*GGGGGG
Trigger: CCCACCTCCGCCGCCACCCCAGTTTACAAGCTCGCT...TAAGAATAACGAAAGGCGGCTGTTGGAGGTTTCAAAGAGAGCGCTTCTTCCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp CTAGGAAGGTTTGAAATCAGCCAGGTTGCCTTCAACCCCTCTCTTGCTATTCATCGGGGGCACTTCGTATaGGGAGATGTCCGGAGGACT +
Preference number: 4 (lower is better)
Translates to: LGRFEISQVAFNPSLAIHRGHFV*GDVRRT
Trigger: AGTCCTCCGGACATCTCCCCATACGAAGTGCCCCCG...ATGAATAGCAAGAGAGGGGTTGAAGGCAACCTGGCTGATTTCAAACCTTCCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CCA 90 bp GGATTGGAAGAAGCGCTCTCTTTGAAACCTCCAACAGCCGCCTTTCGTTATTCTCCTTGTAGAGCTGTGTaGCCGCGTAGTACTGCTCCT +
Preference number: 4 (lower is better)
Translates to: GLEEALSLKPPTAAFRYSPCRAV*PRSTAP
Trigger: AGGAGCAGTACTACGCGGCCACACAGCTCTACAAGG...AGAATAACGAAAGGCGGCTGTTGGAGGTTTCAAAGAGAGCGCTTCTTCCAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CAA 72 bp CAGGAAAGAGTCCTAGAGGCAGATCTGGCCATTCGCTaGGCATCAGAAGCAGCCTCAAAGTTTTCAGAAGCT +
Preference number: 4 (lower is better)
Translates to: QERVLEADLAIR*ASEAASKFSEA
Trigger: AGCTTCTGAAAACTTTGAGGCTGCTTCTGATGCCAAGCGAATGGCCAGATCTGCCTCTAGGACTCTTTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
3UTR CAA 72 bp AACGCTCAAGTTTGTACCCTTTTTATTGTCCTCAGTTaGGAGCCCAGGTTGTCTAAATTGGTCCCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: NAQVCTLFIVLS*EPRLSKLVPGK
Trigger: CTTTCCTGGGACCAATTTAGACAACCTGGGCTCCAAACTGAGGACAATAAAAAGGGTACAAACTTGAGCGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 90 bp AGCTGGGACGCCTGGGGGCACGGCACCTCCGGGAGGTGGCAGCGGTaGCACTGCCAGCAGCTCCTCGCCCGAGGTCACCGCACAATCTTG +
Preference number: 5 (lower is better)
Translates to: SWDAWGHGTSGRWQR*HCQQLLARGHRTIL
Trigger: CAAGATTGTGCGGTGACCTCGGGCGAGGAGCTGCTGGCAGTGCCACCGCTGCCACCTCCCGGAGGTGCCGTGCCCCCAGGCGTCCCAGCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 90 bp TCCGGAGGACTTCCCTGCTCCAGTGATCCCAGCGAGCTTGTAAACTaGGGTGGCGGCGGAGGTGGGGGCTGGCGGCCCATGTACAGGCAC +
Preference number: 5 (lower is better)
Translates to: SGGLPCSSDPSELVN*GGGGGGGWRPMYRH
Trigger: GTGCCTGTACATGGGCCGCCAGCCCCCACCTCCGCCGCCACCCCAGTTTACAAGCTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS TCA 90 bp GGGCACTTCGTATGGGGAGATGTCCGGAGGACTTCCCTGCTCCAGTaGTCCCAGCGAGCTTGTAAACTGGGGTGGCGGCGGAGGTGGGGG +
Preference number: 5 (lower is better)
Translates to: GHFVWGDVRRTSLLQ*SQRACKLGWRRRWG
Trigger: CCCCCACCTCCGCCGCCACCCCAGTTTACAAGCTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGACATCTCCCCATACGAAGTGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 90 bp GAGCTTTGGTGGATTTCATCCACGGGAAAGGGAGCTGGACGCGGTTaGGCTCTTCCAGGCCCCCAGGCTCGGTTCCATTCGGGAAAGGTC +
Preference number: 5 (lower is better)
Translates to: ELWWISSTGKGAGRG*ALPGPQARFHSGKV
Trigger: GACCTTTCCCGAATGGAACCGAGCCTGGGGGCCTGGAAGAGCCCAACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCACCAAAGCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 90 bp CTGTGTAAGCACCTCCTGCCCACTGGCCTTTCCACGCGTGAGCTTTaGTGGATTTCATCCACGGGAAAGGGAGCTGGACGCGGTTGGGCT +
Preference number: 5 (lower is better)
Translates to: LCKHLLPTGLSTREL*WISSTGKGAGRGWA
Trigger: AGCCCAACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 90 bp TGTAAGCACCTCCTGCCCACTGGCCTTTCCACGCGTGAGCTTTGGTaGATTTCATCCACGGGAAAGGGAGCTGGACGCGGTTGGGCTCTT +
Preference number: 5 (lower is better)
Translates to: CKHLLPTGLSTRELW*ISSTGKGAGRGWAL
Trigger: AAGAGCCCAACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CAA 90 bp AGGGCACCTGCCTTCCTTTCAGGAGGATATTCGCGCTCTAAAACAGAAACTTCAGGGAGCTGGACGCGGTaGGGCTCTTCCAGGCCCCCA +
Preference number: 5 (lower is better)
Translates to: RAPAFLSGGYSRSKTETSGSWTR*GSSRPP
Trigger: TGGGGGCCTGGAAGAGCCCAACCGCGTCCAGCTCCC...TGAAGTTTCTGTTTTAGAGCGCGAATATCCTCCTGAAAGGAAGGCAGGTGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS GCA 90 bp ACGGGTCCTCTTGTTTTCCTCGGGTTCCGCTGTGTAAGCACCTCCTaGCCACTGGCCTTTCCACGCGTGAGCTTTGGTGGATTTCATCCA +
Preference number: 5 (lower is better)
Translates to: TGPLVFLGFRCVSTS*PLAFPRVSFGGFHP
Trigger: TGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTACACAGCGGAACCCGAGGAAAACAAGAGGACCCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS-3UTR CAA 90 bp CATCTCTCCGGCTATACCCAACTGGCTCTCGTGCCCTCAAGAATTTTCTTCTTGGGCCGGGAGATGTATTaGTTAAATAAGAATTCCTTC +
Preference number: 5 (lower is better)
Translates to: HLSGYTQLALVPSRIFFLGREMY*LNKNSF
Trigger: GAAGGAATTCTTATTTAACAAATACATCTCCCGGCC...CAAGAAGAAAATTCTTGAGGGCACGAGAGCCAGTTGGGTATAGCCGGAGAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS GCA 72 bp GCCAGCAGCTCCTCGCCCGAGGTCACCGCACAATCTTaGTCCGGCTCTTCGCCCCCACCGCCCCCACTCGGG +
Preference number: 6 (lower is better)
Translates to: ASSSSPEVTAQS*SGSSPPPPPLG
Trigger: CCCGAGTGGGGGCGGTGGGGGCGAAGAGCCGGAGCAAGATTGTGCGGTGACCTCGGGCGAGGAGCTGCTGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 72 bp TCCCAGCGAGCTTGTAAACTGGGGTGGCGGCGGAGGTaGGGGCTGGCGGCCCATGTACAGGCACGCAGGGGG +
Preference number: 6 (lower is better)
Translates to: SQRACKLGWRRR*GLAAHVQARRG
Trigger: CCCCCTGCGTGCCTGTACATGGGCCGCCAGCCCCCACCTCCGCCGCCACCCCAGTTTACAAGCTCGCTGGGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CAA 72 bp TGCCAGCAGCTCCTCGCCCGAGGTCACCGCACAATCTaGCTCCGGCTCTTCGCCCCCACCGCCCCCACTCGG +
Preference number: 6 (lower is better)
Translates to: CQQLLARGHRTI*LRLFAPTAPTR
Trigger: CCGAGTGGGGGCGGTGGGGGCGAAGAGCCGGAGCAAGATTGTGCGGTGACCTCGGGCGAGGAGCTGCTGGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS GCA 72 bp GTTAGCGCTGAACTCTGGCACCGGGCCCCTCTGGAATaGGCACGGGTCCTTGTAGAGCTGTGTGGCCGCGTA +
Preference number: 6 (lower is better)
Translates to: VSAELWHRAPLE*ARVLVELCGRV
Trigger: TACGCGGCCACACAGCTCTACAAGGACCCGTGCGCATTCCAGAGGGGCCCGGTGCCAGAGTTCAGCGCTAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS TCA 72 bp GTATGGGGAGATGTCCGGAGGACTTCCCTGCTCCAGTaGTCCCAGCGAGCTTGTAAACTGGGGTGGCGGCGG +
Preference number: 6 (lower is better)
Translates to: VWGDVRRTSLLQ*SQRACKLGWRR
Trigger: CCGCCGCCACCCCAGTTTACAAGCTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGACATCTCCCCATAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 72 bp TGGATTTCATCCACGGGAAAGGGAGCTGGACGCGGTTaGGCTCTTCCAGGCCCCCAGGCTCGGTTCCATTCG +
Preference number: 6 (lower is better)
Translates to: WISSTGKGAGRG*ALPGPQARFHS
Trigger: CGAATGGAACCGAGCCTGGGGGCCTGGAAGAGCCCAACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CAA 72 bp GTGGATTTCATCCACGGGAAAGGGAGCTGGACGCGGTaGGGCTCTTCCAGGCCCCCAGGCTCGGTTCCATTC +
Preference number: 6 (lower is better)
Translates to: VDFIHGKGSWTR*GSSRPPGSVPF
Trigger: GAATGGAACCGAGCCTGGGGGCCTGGAAGAGCCCAACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 72 bp CTCCTGCCCACTGGCCTTTCCACGCGTGAGCTTTGGTaGATTTCATCCACGGGAAAGGGAGCTGGACGCGGT +
Preference number: 6 (lower is better)
Translates to: LLPTGLSTRELW*ISSTGKGAGRG
Trigger: ACCGCGTCCAGCTCCCTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS CCA 72 bp CACCTCCTGCCCACTGGCCTTTCCACGCGTGAGCTTTaGTGGATTTCATCCACGGGAAAGGGAGCTGGACGC +
Preference number: 6 (lower is better)
Translates to: HLLPTGLSTREL*WISSTGKGAGR
Trigger: GCGTCCAGCTCCCTTTCCCGTGGATGAAATCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS GCA 72 bp GGCACTTCGTATGGGGAGATGTCCGGAGGACTTCCCTaGTCCAGTGATCCCAGCGAGCTTGTAAACTGGGGT +
Preference number: 6 (lower is better)
Translates to: GTSYGEMSGGLP*SSDPSELVNWG
Trigger: ACCCCAGTTTACAAGCTCGCTGGGATCACTGGAGCAGGGAAGTCCTCCGGACATCTCCCCATACGAAGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7
CDS GCA 72 bp CTTGTTTTCCTCGGGTTCCGCTGTGTAAGCACCTCCTaGCCACTGGCCTTTCCACGCGTGAGCTTTGGTGGA +
Preference number: 6 (lower is better)
Translates to: LVFLGFRCVSTS*PLAFPRVSFGG
Trigger: TCCACCAAAGCTCACGCGTGGAAAGGCCAGTGGGCAGGAGGTGCTTACACAGCGGAACCCGAGGAAAACAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000085591.7