RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDSS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026784

Ensembl transcript IDs: ENSMUST00000135621.2, ENSMUST00000149229.2, ENSMUST00000152170.8

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GACGACAACTGCACATTGCTGGTGTCCTTTGATGAAACTGTGATATACTATGCAGTATCTTGGCCATACTaGGCTGTGAAGCAGGATTCT +
Preference number: 2 (lower is better)
Translates to: DDNCTLLVSFDETVIYYAVSWPY*AVKQDS
Trigger: AGAATCCTGCTTCACAGCCCAGTATGGCCAAGATAC...TGCATAGTATATCACAGTTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135621.2
3UTR-3UTR TCA 90 bp AGTAGAACACAGTTCCTGGAATTGCTTCTGTCCTCTTTTAGGTCTCAGGTGTCTAGAACACAAGGAAAGTaGGAACAACAAAGTGTCTGG +
Preference number: 2 (lower is better)
Translates to: SRTQFLELLLSSFRSQVSRTQGK*EQQSVW
Trigger: CCAGACACTTTGTTGTTCTCACTTTCCTTGTGTTCT...AGACACCTGAGACCTAAAAGAGGACAGAAGCAATTCCAGGAACTGTGTTCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR-3UTR CAA 90 bp AGGGCGTCCCTTTCTGTAGATGGTCTAAGCTTCCTGATCTCTCTCACAGCTTTGGCTGGGCGAGGTAGGTaGTTTGCTGCACGCCATCAC +
Preference number: 3 (lower is better)
Translates to: RASLSVDGLSFLISLTALAGRGR*FAARHH
Trigger: GTGATGGCGTGCAGCAAACAACCTACCTCGCCCAGC...CAAAGCTGTGAGAGAGATCAGGAAGCTTAGACCATCTACAGAAAGGGACGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149229.2
3UTR CCA 72 bp GCCATGGCACGTGTGCAGAGAGTAGAACACAGTTCCTaGAATTGCTTCTGTCCTCTTTTAGGTCTCAGGTGT +
Preference number: 3 (lower is better)
Translates to: AMARVQRVEHSS*NCFCPLLGLRC
Trigger: ACACCTGAGACCTAAAAGAGGACAGAAGCAATTCCAGGAACTGTGTTCTACTCTCTGCACACGTGCCATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR GCA 72 bp GGTCTCAGGTGTCTAACATCAGGAATCTGTGGCAAGTaGTTCTCTGGTGAGCTATCTTGTCAGCATAGACTA +
Preference number: 3 (lower is better)
Translates to: GLRCLTSGICGK*FSGELSCQHRL
Trigger: TAGTCTATGCTGACAAGATAGCTCACCAGAGAAGCACTTGCCACAGATTCCTGATGTTAGACACCTGAGACC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR TCA 72 bp TTTGCCAGCATGGTTAACTTCTGGTGTCCTTTTGTATaGGGACACCATTGCTTCTGTCCACTCTGCCATTAT +
Preference number: 3 (lower is better)
Translates to: FASMVNFWCPFV*GHHCFCPLCHY
Trigger: ATAATGGCAGAGTGGACAGAAGCAATGGTGTCCTCATACAAAAGGACACCAGAAGTTAACCATGCTGGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149229.2
3UTR-3UTR CAA 90 bp TGTCCTCTTTTAGGTCTCAGGTGTCTAACATCAGGAATCTGTGGCAAGTGCTTCAGACTAGGAAATATTTaGATTGATTCTTGGGGGAGG +
Preference number: 3 (lower is better)
Translates to: CPLLGLRCLTSGICGKCFRLGNI*IDSWGR
Trigger: CCTCCCCCAAGAATCAATCAAAATATTTCCTAGTCT...GAAGCACTTGCCACAGATTCCTGATGTTAGACACCTGAGACCTAAAAGAGGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR CCA 90 bp ACATCAGGAATCTGTGGCAAGTGCTTCTCTGGTGAGCTATCTTGTCAGCATAGACTATGGAGCGCTGGCTaGCTTGCATCTCTCGGGCAT +
Preference number: 4 (lower is better)
Translates to: TSGICGKCFSGELSCQHRLWSAG*LASLGH
Trigger: ATGCCCGAGAGATGCAAGCCAGCCAGCGCTCCATAG...TCTATGCTGACAAGATAGCTCACCAGAGAAGCACTTGCCACAGATTCCTGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR GCA 90 bp ACATCAGGAATCTGTGGCAAGTGCTTCTCTGGTGAGCTATCTTGTCAGCATAGAGAGCGCTGGCTGGCTTaGATCTCTCGGGCATTATTA +
Preference number: 4 (lower is better)
Translates to: TSGICGKCFSGELSCQHRERWLA*ISRALL
Trigger: TAATAATGCCCGAGAGATGCAAGCCAGCCAGCGCTC...TCTATGCTGACAAGATAGCTCACCAGAGAAGCACTTGCCACAGATTCCTGATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR CAA 72 bp GGCACGTGTGCAGAGAGTAGAACACAGTTCCTGGAATaGCTTCTGTCCTCTTTTAGGTCTCAGGTGTCTAAC +
Preference number: 4 (lower is better)
Translates to: GTCAESRTQFLE*LLSSFRSQVSN
Trigger: GTTAGACACCTGAGACCTAAAAGAGGACAGAAGCAATTCCAGGAACTGTGTTCTACTCTCTGCACACGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR TCA 90 bp GAATTGCTTCTGTCCTCTTTTAGGTCTCAGGTGTCTAACATCAGGAATCTGTGGGGCTGGCTGTCTTCTTaGAGGTCTTCTCAAGGTAGT +
Preference number: 4 (lower is better)
Translates to: ELLLSSFRSQVSNIRNLWGWLSS*RSSQGS
Trigger: ACTACCTTGAGAAGACCTTCAAGAAGACAGCCAGCC...CCACAGATTCCTGATGTTAGACACCTGAGACCTAAAAGAGGACAGAAGCAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR CCA 90 bp TGTCCTCTTTTAGGTCTCAGGTGTCTAACATCAGGAATCTGTGGCAAGTGCTTCTGTCCTTTAGTTCTCTaGTGGAGATGTGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: CPLLGLRCLTSGICGKCFCPLVL*WRCAAP
Trigger: AGGAGCTGCACATCTCCACCAGAGAACTAAAGGACA...GAAGCACTTGCCACAGATTCCTGATGTTAGACACCTGAGACCTAAAAGAGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR GCA 90 bp ATCTGTGGCAAGTGCTTCTCTGGTGAGCTATCTTGTCAGCATAGACTAGGAAATTCTCTGGTGGAGATGTaGAGCTCCTTTCTAATGTCT +
Preference number: 4 (lower is better)
Translates to: ICGKCFSGELSCQHRLGNSLVEM*SSFLMS
Trigger: AGACATTAGAAAGGAGCTGCACATCTCCACCAGAGA...ATTTCCTAGTCTATGCTGACAAGATAGCTCACCAGAGAAGCACTTGCCACAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR GCA 90 bp ATCTGTGGCAAGTGCTTCTCTGGTGAGCTATCTTGTCAGCATAGACTAGGAAATACGACAACTGCACATTaGTGGTGTCCTTTGATGAAA +
Preference number: 4 (lower is better)
Translates to: ICGKCFSGELSCQHRLGNTTTAH*WCPLMK
Trigger: TTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGT...ATTTCCTAGTCTATGCTGACAAGATAGCTCACCAGAGAAGCACTTGCCACAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR CCA 90 bp GAATTGCTTCTGTCCTCTTTTAGGTCTCAGGTGTCTAACATCAGGAATCTGTGGACAACTGCACATTGCTaGTGTCCTTTGATGAAACTG +
Preference number: 4 (lower is better)
Translates to: ELLLSSFRSQVSNIRNLWTTAHC*CPLMKL
Trigger: CAGTTTCATCAAAGGACACCAGCAATGTGCAGTTGT...CCACAGATTCCTGATGTTAGACACCTGAGACCTAAAAGAGGACAGAAGCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR CAA 72 bp TTTAAAAGGATCACTGTATTTCTCACCACTCTGAGTTaGACGACAACTGCACATTGCTGGTGTCCTTTGATG +
Preference number: 4 (lower is better)
Translates to: FKRITVFLTTLS*TTTAHCWCPLM
Trigger: CATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135621.2
CDS-3UTR GCA 90 bp AGTAGAACACAGTTCCTGGAATTGCTTCTGTCCTCTTTTAGGTCTCAGGTGTCTACAGAACGTACATACTaGTTTACAACTGTTGGCTAT +
Preference number: 4 (lower is better)
Translates to: SRTQFLELLLSSFRSQVSTERTY*FTTVGY
Trigger: ATAGCCAACAGTTGTAAAGCAGTATGTACGTTCTGT...AGACACCTGAGACCTAAAAGAGGACAGAAGCAATTCCAGGAACTGTGTTCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
CDS-3UTR GCA 90 bp CTTGGGGGAGGAAATATGACAGAAAAGTTCATTATTTCCATACCAGAAGAACACAACTGTGATATACTATaGATAGTTGGGGAGGCAGAC +
Preference number: 4 (lower is better)
Translates to: LGGGNMTEKFIISIPEEHNCDIL*IVGEAD
Trigger: GTCTGCCTCCCCAACTATGCATAGTATATCACAGTT...GTGTTCTTCTGGTATGGAAATAATGAACTTTTCTGTCATATTTCCTCCCCCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000152170.8
3UTR CAA 72 bp ATTTCTCACCACTCTGAGTTTGACGACAACTGCACATaGCTGGTGTCCTTTGATGAAACTGTGATATACTAT +
Preference number: 4 (lower is better)
Translates to: ISHHSEFDDNCT*LVSFDETVIYY
Trigger: ATAGTATATCACAGTTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135621.2