Pregenerated sensors for PDRG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027472Ensembl transcript IDs: ENSMUST00000028972.9, ENSMUST00000140853.2, ENSMUST00000150545.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCACATTCCTGATGCCTGTCCCCTTAAACAGACAATCCTGCCCTTaGAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTACCACAGGTCCC | + |
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Preference number: 1 (lower is better) Translates to: ATFLMPVPLNRQSCP*RSQGWELGSPTTGP Trigger: GGGACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAGGAATGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 90 bp | ACAGAAGCCACATTCCTGATGCCTGTCCCCTTAAACAGACAATCCTaGCCTTGCAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTACCACA | + |
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Preference number: 1 (lower is better) Translates to: TEATFLMPVPLNRQS*PCRSQGWELGSPTT Trigger: TGTGGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAGGAATGTGGCTTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR TCA 90 bp | GAACGGTCAGTGTCCTGCTTTATTCCAGTTGTCACACACACTGCCTaGAAATGCCTCGCTGTGCAGAAAGCTGGAATGAAGCTCCCAGTC | + |
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Preference number: 1 (lower is better) Translates to: ERSVSCFIPVVTHTA*KCLAVQKAGMKLPV Trigger: GACTGGGAGCTTCATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTGTGTGTGACAACTGGAATAAAGCAGGACACTGACCGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 90 bp | CTGGTGACCAGGCCAAGCCCACAGAACAGACTAAGGGTTCTCTCTTaGACAAAGCAACCAAGCACTACAGAAAAAGATTTGTACAGAAGC | + |
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Preference number: 1 (lower is better) Translates to: LVTRPSPQNRLRVLS*TKQPSTTEKDLYRS Trigger: GCTTCTGTACAAATCTTTTTCTGTAGTGCTTGGTTGCTTTGTGCAAGAGAGAACCCTTAGTCTGTTCTGTGGGCTTGGCCTGGTCACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTTGCCAGCCCTGGGCCAGAACTCCATAAGGACTTCTACCTCAAGAGCAAGCGTGTCCAAGCTCTGGTaGCCAGGCCAAGCCCACAGA | + |
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Preference number: 2 (lower is better) Translates to: CLPALGQNSIRTSTSRASVSKLW*PGQAHR Trigger: TCTGTGGGCTTGGCCTGGTCACCAGAGCTTGGACAC...GCTTGCTCTTGAGGTAGAAGTCCTTATGGAGTTCTGGCCCAGGGCTGGCAAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | GTCCCCTTAAACAGACAATCCTGCCCTTGCAGGTCTCAAGGCTGGGAGTTGGGACACCCACACACCTACTaGCAGCTGCCAGGGTTTGTC | + |
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Preference number: 2 (lower is better) Translates to: VPLNRQSCPCRSQGWELGHPHTY*QLPGFV Trigger: GACAAACCCTGGCAGCTGTCAGTAGGTGTGTGGGTG...TCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CAA 90 bp | AGCCACATTCCTGATGCCTGTCCCCTTAAACAGACAATCCTGCCCTaGCAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTACCACAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: SHIPDACPLKQTILP*QVSRLGVGKSYHRS Trigger: GGACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAGGAATGTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | GACTGGCAGCACCTCTACTACAGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGGTGTCCAAGCTCTGGTaGCCAGGCCAAGCCCACAGA | + |
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Preference number: 2 (lower is better) Translates to: DWQHLYYRKPAGKRTELEVSKLW*PGQAHR Trigger: TCTGTGGGCTTGGCCTGGTCACCAGAGCTTGGACAC...CTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCTGTAGTAGAGGTGCTGCCAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCTGAAAATGCCTCGCTGTGCAGAAAGCTGGAATGAAGCTCCCAGTCCACACCCACACACCTACTaGCAGCTGCCAGGGTTTGTC | + |
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Preference number: 2 (lower is better) Translates to: HCLKMPRCAESWNEAPSPHPHTY*QLPGFV Trigger: GACAAACCCTGGCAGCTGTCAGTAGGTGTGTGGGTG...TGGACTGGGAGCTTCATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | AGGTTACTGCTTGCCAGCCCTGGGCCAGAACTCCATAAGGACTTCTACCTCAAGAGCAAGCACAGAGGGTaGCTGGCAGCACCTCTACTA | + |
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Preference number: 2 (lower is better) Translates to: RLLLASPGPELHKDFYLKSKHRG*LAAPLL Trigger: TAGTAGAGGTGCTGCCAGTCACCCTCTGTGCTTGCT...CTTGAGGTAGAAGTCCTTATGGAGTTCTGGCCCAGGGCTGGCAAGCAGTAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CAA 90 bp | CCCTTAAACAGACAATCCTGCCCTTGCAGGTCTCAAGGCTGGGAGTaGGGAAGTCCTACCACAGGTCCCCCATTCTTCTGTGAGTCTCAT | + |
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Preference number: 2 (lower is better) Translates to: PLNRQSCPCRSQGWE*GSPTTGPPFFCESH Trigger: ATGAGACTCACAGAAGAATGGGGGACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR CCA 90 bp | GCTTCACGCAGAAGTGAACGGTCAGTGTCCTGCTTTATTCCAGTTGTCACACACCGCTGTGCAGAAAGCTaGAATGAAGCTCCCAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: ASRRSERSVSCFIPVVTHRCAES*NEAPSP Trigger: TGGACTGGGAGCTTCATTCCAGCTTTCTGCACAGCG...GTGTGTGACAACTGGAATAAAGCAGGACACTGACCGTTCACTTCTGCGTGAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCTGAAAATGCCTCGCTGTGCAGAAAGCTGGAATGAAGCTCCCAGTCCATTATCCAGGTGCTCTTaGTCTTTCTGGATCATTTCC | + |
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Preference number: 2 (lower is better) Translates to: HCLKMPRCAESWNEAPSPLSRCS*SFWIIS Trigger: GGAAATGATCCAGAAAGATCAAGAGCACCTGGATAA...TGGACTGGGAGCTTCATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR GCA 90 bp | AGGGTGACTGGCAGCACCTCTACTACAGAAAGCCAGCAGGAAAAAGGACAGAACCTAAGGGTTCTCTCTTaGACAAAGCAACCAAGCACT | + |
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Preference number: 2 (lower is better) Translates to: RVTGSTSTTESQQEKGQNLRVLS*TKQPST Trigger: AGTGCTTGGTTGCTTTGTGCAAGAGAGAACCCTTAG...GTTCTGTCCTTTTTCCTGCTGGCTTTCTGTAGTAGAGGTGCTGCCAGTCACCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR CCA 90 bp | GGTTACTGCTTGCCAGCCCTGGGCCAGAACTCCATAAGGACTTCTACCTCAAGAGAAAAAGGACAGAACTaGAGCAGTGGGGAAACAAAT | + |
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Preference number: 2 (lower is better) Translates to: GYCLPALGQNSIRTSTSREKGQN*SSGETN Trigger: ATTTGTTTCCCCACTGCTCCAGTTCTGTCCTTTTTC...TCTTGAGGTAGAAGTCCTTATGGAGTTCTGGCCCAGGGCTGGCAAGCAGTAACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CAA 90 bp | AGGGTTCTCTCTTGCACAAAGCAACCAAGCACTACAGAAAAAGATTaGTACAGAAGCCACATTCCTGATGCCTGTCCCCTTAAACAGACA | + |
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Preference number: 2 (lower is better) Translates to: RVLSCTKQPSTTEKD*YRSHIPDACPLKQT Trigger: TGTCTGTTTAAGGGGACAGGCATCAGGAATGTGGCTTCTGTACAAATCTTTTTCTGTAGTGCTTGGTTGCTTTGTGCAAGAGAGAACCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CAA 90 bp | CGGTTTTCCTTGGGCTTCAAAGAGGCGGTTAACTTTCACTTTAAGTaGACTCCGCAGCCTTTCTATTTCTTTATCCAGGTGCTCTTGATC | + |
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Preference number: 2 (lower is better) Translates to: RFSLGFKEAVNFHFK*TPQPFYFFIQVLLI Trigger: GATCAAGAGCACCTGGATAAAGAAATAGAAAGGCTGCGGAGTCAACTTAAAGTGAAAGTTAACCGCCTCTTTGAAGCCCAAGGAAAACCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR GCA 90 bp | CTACAGAAAAAGATTTGTACAGAAGCCACATTCCTGATGCCTGTCCCCTTAAACTTAAACAGACAATCCTaGCCTTGCAGGTCTCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: LQKKICTEATFLMPVPLNLNRQS*PCRSQG Trigger: GCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAA...GTTTAAGGGGACAGGCATCAGGAATGTGGCTTCTGTACAAATCTTTTTCTGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR GCA 90 bp | TCCGCAGCCTTTCTATTTCTTTATCCAGGTGCTCTTGATCTTTCTGGATCATTTTTAAACAGACAATCCTaGCCTTGCAGGTCTCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: SAAFLFLYPGALDLSGSFLNRQS*PCRSQG Trigger: GCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAA...AAATGATCCAGAAAGATCAAGAGCACCTGGATAAAGAAATAGAAAGGCTGCGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR CAA 90 bp | CACTGCCTGAAAATGCCTCGCTGTGCAGAAAGCTGGAATGAAGCTCCCAGTCCACAGGAAGGTTACTGCTaGCCAGCCCTGGGCCAGAAC | + |
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Preference number: 3 (lower is better) Translates to: HCLKMPRCAESWNEAPSPQEGYC*PALGQN Trigger: GTTCTGGCCCAGGGCTGGCAAGCAGTAACCTTCCTG...TGGACTGGGAGCTTCATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 72 bp | CTGATGCCTGTCCCCTTAAACAGACAATCCTGCCCTTaGAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTACC | + |
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Preference number: 3 (lower is better) Translates to: LMPVPLNRQSCP*RSQGWELGSPT Trigger: GGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CCA 72 bp | TTAAACAGACAATCCTGCCCTTGCAGGTCTCAAGGCTaGGAGTTGGGAAGTCCTACCACAGGTCCCCCATTC | + |
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Preference number: 3 (lower is better) Translates to: LNRQSCPCRSQG*ELGSPTTGPPF Trigger: GAATGGGGGACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR CAA 90 bp | TTAAACAGACAATCCTGCCCTTGCAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTTCTCAAGGCTGGGAGTaGGGAAGTCCTACCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: LNRQSCPCRSQGWELGSPSQGWE*GSPTTG Trigger: ACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGA...AGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR TCA 72 bp | TCGGCTGCAGACATTCTCACACACCCACACACCTACTaGCAGCTGCCAGGGTTTGTCAATAGGTCTTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: SAADILTHPHTY*QLPGFVNRSCV Trigger: GACACAAGACCTATTGACAAACCCTGGCAGCTGTCAGTAGGTGTGTGGGTGTGTGAGAATGTCTGCAGCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 72 bp | ACATTCCTGATGCCTGTCCCCTTAAACAGACAATCCTaGCCTTGCAGGTCTCAAGGCTGGGAGTTGGGAAGT | + |
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Preference number: 3 (lower is better) Translates to: TFLMPVPLNRQS*PCRSQGWELGS Trigger: ACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAGGAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGTTAAAACCTTTCAGCTCCGGTTTTCCTTGGGCTTCAAAGAGGCGGTTAACCAGACAATCCTGCCCTaGCAGGTCTCAAGGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: QVKTFQLRFSLGFKEAVNQTILP*QVSRLG Trigger: TCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTG...GTTAACCGCCTCTTTGAAGCCCAAGGAAAACCGGAGCTGAAAGGTTTTAACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR CAA 90 bp | AGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGCAGTGGGGAAACAAATGTGTCTCTCAAGGCTGGGAGTaGGGAAGTCCTACCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: RKPAGKRTELEQWGNKCVSQGWE*GSPTTG Trigger: ACCTGTGGTAGGACTTCCCAACTCCCAGCCTTGAGA...GACACATTTGTTTCCCCACTGCTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CCA 72 bp | AGGACTTCTACCTCAAGAGCAAGCACAGAGGGTGACTaGCAGCACCTCTACTACAGAAAGCCAGCAGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: RTSTSRASTEGD*QHLYYRKPAGK Trigger: TTTTCCTGCTGGCTTTCTGTAGTAGAGGTGCTGCCAGTCACCCTCTGTGCTTGCTCTTGAGGTAGAAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CCA 72 bp | AGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGCAGTaGGGAAACAAATGTGTCTACCTGAAGCTGGTGAGG | + |
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Preference number: 3 (lower is better) Translates to: RKPAGKRTELEQ*GNKCVYLKLVR Trigger: CCTCACCAGCTTCAGGTAGACACATTTGTTTCCCCACTGCTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CCA 72 bp | TCAAGTGCTAGGGAGCATCAGAGGACAGGTTCATTATaGGGATGTGACATCGTGGATATGACATCCAGGCGA | + |
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Preference number: 3 (lower is better) Translates to: SSAREHQRTGSL*GCDIVDMTSRR Trigger: TCGCCTGGATGTCATATCCACGATGTCACATCCCCATAATGAACCTGTCCTCTGATGCTCCCTAGCACTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140853.2 |
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| 3UTR TCA 72 bp | GTGTCCTGCTTTATTCCAGTTGTCACACACACTGCCTaGAAATGCCTCGCTGTGCAGAAAGCTGGAATGAAG | + |
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Preference number: 3 (lower is better) Translates to: VSCFIPVVTHTA*KCLAVQKAGMK Trigger: CTTCATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTGTGTGTGACAACTGGAATAAAGCAGGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 72 bp | GTCAGTGTCCTGCTTTATTCCAGTTGTCACACACACTaGCTGAAAATGCCTCGCTGTGCAGAAAGCTGGAAT | + |
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Preference number: 3 (lower is better) Translates to: VSVLLYSSCHTH*LKMPRCAESWN Trigger: ATTCCAGCTTTCTGCACAGCGAGGCATTTTCAGGCAGTGTGTGTGACAACTGGAATAAAGCAGGACACTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR GCA 72 bp | AGGCCAAGCCCACAGAACAGACTAAGGGTTCTCTCTTaGACAAAGCAACCAAGCACTACAGAAAAAGATTTG | + |
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Preference number: 3 (lower is better) Translates to: RPSPQNRLRVLS*TKQPSTTEKDL Trigger: CAAATCTTTTTCTGTAGTGCTTGGTTGCTTTGTGCAAGAGAGAACCCTTAGTCTGTTCTGTGGGCTTGGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR TCA 72 bp | TGGGCTTCAAAGAGGCGGTTAACTTTCACTTTAAGTTaGCTCCGCAGCCTTTCTATTTCTTTATCCAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: WASKRRLTFTLS*LRSLSISLSRC Trigger: GCACCTGGATAAAGAAATAGAAAGGCTGCGGAGTCAACTTAAAGTGAAAGTTAACCGCCTCTTTGAAGCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR-3UTR CAA 90 bp | TACAGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGCAGTGGGGAAACAAATGTTTTATCCAGGTGCTCTaGATCTTTCTGGATCATTTC | + |
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Preference number: 3 (lower is better) Translates to: YRKPAGKRTELEQWGNKCFIQVL*IFLDHF Trigger: GAAATGATCCAGAAAGATCAAGAGCACCTGGATAAA...ACATTTGTTTCCCCACTGCTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| 3UTR CAA 72 bp | CCTGATGCCTGTCCCCTTAAACAGACAATCCTGCCCTaGCAGGTCTCAAGGCTGGGAGTTGGGAAGTCCTAC | + |
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Preference number: 4 (lower is better) Translates to: PDACPLKQTILP*QVSRLGVGKSY Trigger: GTAGGACTTCCCAACTCCCAGCCTTGAGACCTGCAAGGGCAGGATTGTCTGTTTAAGGGGACAGGCATCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| CDS-3UTR TCA 90 bp | GCTTCACGCAGAAGTGAACGGTCAGTGTCCTGCTTTATTCCAGTTGTCACACACAGGCCCTCTCGGTTCTaGTTCCTCTTGGTGTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: ASRRSERSVSCFIPVVTHRPSRF*FLLVSR Trigger: CCTGGACACCAAGAGGAATCAGAACCGAGAGGGCCT...GTGTGTGACAACTGGAATAAAGCAGGACACTGACCGTTCACTTCTGCGTGAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| CDS-3UTR TCA 90 bp | CACATTCACACTATGATCTCGAGCCAGCCAGGCAGGCCCTGCTCGCAGAGGTCGTTATCCAGGTGCTCTTaGTCTTTCTGGATCATTTCC | + |
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Preference number: 4 (lower is better) Translates to: HIHTMISSQPGRPCSQRSLSRCS*SFWIIS Trigger: GGAAATGATCCAGAAAGATCAAGAGCACCTGGATAA...CGACCTCTGCGAGCAGGGCCTGCCTGGCTGGCTCGAGATCATAGTGTGAATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| 3UTR CAA 72 bp | ATACTCCACGTCCAGTCACATCAGGAAGGTTACTGCTaGCCAGCCCTGGGCCAGAACTCCATAAGGACTTCT | + |
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Preference number: 4 (lower is better) Translates to: ILHVQSHQEGYC*PALGQNSIRTS Trigger: AGAAGTCCTTATGGAGTTCTGGCCCAGGGCTGGCAAGCAGTAACCTTCCTGATGTGACTGGACGTGGAGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| CDS-3UTR TCA 90 bp | CTACAGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGCAGTGGGGAAACAAATGTCCTTCGTCTTAGGGTaGGGCATTTTGATGAACATG | + |
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Preference number: 4 (lower is better) Translates to: LQKASRKKDRTGAVGKQMSFVLG*GILMNM Trigger: CATGTTCATCAAAATGCCTCACCCTAAGACGAAGGA...CATTTGTTTCCCCACTGCTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCTGTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| CDS-3UTR TCA 90 bp | GACTGGCAGCACCTCTACTACAGAAAGCCAGCAGGAAAAAGGACAGAACTGGAGACTTTCACTTTAAGTTaGCTCCGCAGCCTTTCTATT | + |
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Preference number: 4 (lower is better) Translates to: DWQHLYYRKPAGKRTELETFTLS*LRSLSI Trigger: AATAGAAAGGCTGCGGAGTCAACTTAAAGTGAAAGT...CTCCAGTTCTGTCCTTTTTCCTGCTGGCTTTCTGTAGTAGAGGTGCTGCCAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| 3UTR CAA 72 bp | TCTTGCACAAAGCAACCAAGCACTACAGAAAAAGATTaGTACAGAAGCCACATTCCTGATGCCTGTCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: SCTKQPSTTEKD*YRSHIPDACPL Trigger: AAGGGGACAGGCATCAGGAATGTGGCTTCTGTACAAATCTTTTTCTGTAGTGCTTGGTTGCTTTGTGCAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028972.9 ENSMUST00000150545.8 |
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| 3UTR CAA 72 bp | TTGGGCTTCAAAGAGGCGGTTAACTTTCACTTTAAGTaGACTCCGCAGCCTTTCTATTTCTTTATCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LGFKEAVNFHFK*TPQPFYFFIQV Trigger: CACCTGGATAAAGAAATAGAAAGGCTGCGGAGTCAACTTAAAGTGAAAGTTAACCGCCTCTTTGAAGCCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| CDS-3UTR CAA 90 bp | CGTGGATATGACATCCAGGCGAGACCAGAGACACTCAGGTCCTTCTGTAGGGCCTCTCTCACCTGCCGCTaGTCCGACAGCACGGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: RGYDIQARPETLRSFCRASLTCR*SDSTAS Trigger: CGAGGCCGTGCTGTCGGACAAGCGGCAGGTGAGAGA...GGCCCTACAGAAGGACCTGAGTGTCTCTGGTCTCGCCTGGATGTCATATCCACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140853.2 |
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| CDS-3UTR CAA 90 bp | TTCAGCTCCGGTTTTCCTTGGGCTTCAAAGAGGCGGTTAACTTTCACTTTAAGTTCTCTCACCTGCCGCTaGTCCGACAGCACGGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: FSSGFPWASKRRLTFTLSSLTCR*SDSTAS Trigger: CGAGGCCGTGCTGTCGGACAAGCGGCAGGTGAGAGA...ACTTAAAGTGAAAGTTAACCGCCTCTTTGAAGCCCAAGGAAAACCGGAGCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150545.8 |
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| CDS-3UTR CAA 90 bp | AGGTTACTGCTTGCCAGCCCTGGGCCAGAACTCCATAAGGACTTCTACCTCAAGTTTATCCAGGTGCTCTaGATCTTTCTGGATCATTTC | + |
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Preference number: 5 (lower is better) Translates to: RLLLASPGPELHKDFYLKFIQVL*IFLDHF Trigger: GAAATGATCCAGAAAGATCAAGAGCACCTGGATAAA...CTTGAGGTAGAAGTCCTTATGGAGTTCTGGCCCAGGGCTGGCAAGCAGTAACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| CDS-3UTR CAA 90 bp | GGTTCTCTCTTGCACAAAGCAACCAAGCACTACAGAAAAAGATTTGTACAGAAGAACTTTCACTTTAAGTaGACTCCGCAGCCTTTCTAT | + |
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Preference number: 5 (lower is better) Translates to: GSLLHKATKHYRKRFVQKNFHFK*TPQPFY Trigger: ATAGAAAGGCTGCGGAGTCAACTTAAAGTGAAAGTT...CTTCTGTACAAATCTTTTTCTGTAGTGCTTGGTTGCTTTGTGCAAGAGAGAACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028972.9 |
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| CDS CAA 72 bp | AATGCGCTCGCAGCCGCCACGTCTCTCACCTGCCGCTaGTCCGACAGCACGGCCTCGGCCAACTCCTCTACT | + |
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Preference number: 6 (lower is better) Translates to: NALAAATSLTCR*SDSTASANSST Trigger: AGTAGAGGAGTTGGCCGAGGCCGTGCTGTCGGACAAGCGGCAGGTGAGAGACGTGGCGGCTGCGAGCGCATT 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140853.2 ENSMUST00000150545.8 |
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