Pregenerated sensors for PDPN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028583Ensembl transcript IDs: ENSMUST00000030317.14, ENSMUST00000119654.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGTATCTTTCCTTTGGTACTGCTGGCCAAGCGGAGGGGTCACCATaGCTGTGGGTGGGGTGGGTGGGCACGCCATGGGTCATCTTCCTC | + |
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Preference number: 1 (lower is better) Translates to: LYLSFGTAGQAEGSP*LWVGWVGTPWVIFL Trigger: GAGGAAGATGACCCATGGCGTGCCCACCCACCCCACCCACAGCCATGGTGACCCCTCCGCTTGGCCAGCAGTACCAAAGGAAAGATACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 90 bp | GGTGGGTGGGCACGCCATGGGTCATCTTCCTCCACAGGAAGAGGATaGGGAACAGGGCAAGTTGGAAGCTCTCTTATTTTCAGATGTGTT | + |
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Preference number: 1 (lower is better) Translates to: GGWARHGSSSSTGRG*GTGQVGSSLIFRCV Trigger: AACACATCTGAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAAGATGACCCATGGCGTGCCCACCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 90 bp | TGGGTCATCTTCCTCCACAGGAAGAGGATGGGGAACAGGGCAAGTTaGAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTC | + |
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Preference number: 1 (lower is better) Translates to: WVIFLHRKRMGNRAS*KLSYFQMCWENNLF Trigger: GAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAAGATGACCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 90 bp | CTTGGACACAATCAGGTTTTATTTGAAAAGATGTCTACACTGTATTaGGTACCAACACAGACGACCAAGACACTACAGCTCTGTCCCAGC | + |
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Preference number: 1 (lower is better) Translates to: LGHNQVLFEKMSTLY*VPTQTTKTLQLCPS Trigger: GCTGGGACAGAGCTGTAGTGTCTTGGTCGTCTGTGTTGGTACCCAATACAGTGTAGACATCTTTTCAAATAAAACCTGATTGTGTCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CCA 90 bp | AAGGACCCATGCCTCTGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTTGGCTGTGGGTGGGGTaGGTGGGCACGCCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: KDPCLCDVTFPDSMPLNSWLWVG*VGTPWV Trigger: GACCCATGGCGTGCCCACCCACCCCACCCACAGCCA...ACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACAGAGGCATGGGTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CCA 90 bp | AAGGACCCATGCCTCTGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTGGGTCACCATGGCTGTaGGTGGGGTGGGTGGGCACG | + |
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Preference number: 2 (lower is better) Translates to: KDPCLCDVTFPDSMPLNSGSPWL*VGWVGT Trigger: CGTGCCCACCCACCCCACCCACAGCCATGGTGACCC...ACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACAGAGGCATGGGTCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR TCA 90 bp | CCGGAACTGAAGGCACAGTGGATGCTTAGGACTGGGCTGGAATGTGTATGTATCGGACCCATGCCTCTGTaGTGTAACATTTCCAGACTC | + |
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Preference number: 2 (lower is better) Translates to: PELKAQWMLRTGLECVCIGPMPL*CNISRL Trigger: GAGTCTGGAAATGTTACATCACAGAGGCATGGGTCC...GATACATACACATTCCAGCCCAGTCCTAAGCATCCACTGTGCCTTCAGTTCCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR TCA 90 bp | GTTACAAGTTGGCAACTGCAAAAGGACCCATGCCTCTGTGATGTAACATTTCCACAAAGGCAGATGCTTTaGGGGGCTGTGGCTTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VTSWQLQKDPCLCDVTFPQRQML*GAVACP Trigger: AGGACAAGCCACAGCCCCTCAAAGCATCTGCCTTTG...TGGAAATGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CAA 90 bp | ATGGGTCATCTTCCTCCACAGGAAGAGGATGGGGAACAGGGCAAGTaGGAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTT | + |
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Preference number: 2 (lower is better) Translates to: MGHLPPQEEDGEQGK*EALLFSDVLGEQPV Trigger: AACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAAGATGACCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CCA 90 bp | AGTGCAGTTACAAGTTGGCAACTGCAAAAGGACCCATGCCTCTGTGATGTAACATGCTTTGAGGGGCTGTaGCTTGTCCTGTATCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: SAVTSWQLQKDPCLCDVTCFEGL*LVLYLS Trigger: GGAAAGATACAGGACAAGCCACAGCCCCTCAAAGCA...TGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CCA 90 bp | CATCCAACAGTGTTCTCAGCATCCAGGATGAGGTCTCTATTATCCAGAAAGATGGCCAGGGTGAACCCATaGTTACAGTTGCTAAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: HPTVFSASRMRSLLSRKMARVNP*LQLLKL Trigger: CAGCTTTAGCAACTGTAACCATGGGTTCACCCTGGC...CATCTTTCTGGATAATAGAGACCTCATCCTGGATGCTGAGAACACTGTTGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR GCA 90 bp | AATGTGTATGTATCAAGTGCAGTTACAAGTTGGCAACTGCAAAAGGACCCATGCTTTTCCAAAGGCAGATaGTTTGAGGGGCTGTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: NVYVSSAVTSWQLQKDPCFSKGR*FEGLWL Trigger: AAGCCACAGCCCCTCAAAGCATCTGCCTTTGGAAAA...GCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACTTGATACATACACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR GCA 90 bp | CATCCAACAGTGTTCTCAGCATCCAGGATGAGGTCTCTATTATCCAGAAAGATGCTGCAAAAGGACCCATaGCTCTGTGATGTAACATTT | + |
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Preference number: 2 (lower is better) Translates to: HPTVFSASRMRSLLSRKMLQKDP*LCDVTF Trigger: AAATGTTACATCACAGAGGCATGGGTCCTTTTGCAG...CATCTTTCTGGATAATAGAGACCTCATCCTGGATGCTGAGAACACTGTTGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CAA 90 bp | GAACCCATGGTTACAGTTGCTAAAGCTGGCGATACTGTCTTGGCTTaGCTCCATTTTCTAAGCATGTTGTCTTTTGAATCATCGATCATA | + |
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Preference number: 2 (lower is better) Translates to: EPMVTVAKAGDTVLA*LHFLSMLSFESSII Trigger: TATGATCGATGATTCAAAAGACAACATGCTTAGAAAATGGAGCAAAGCCAAGACAGTATCGCCAGCTTTAGCAACTGTAACCATGGGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 72 bp | GCACGCCATGGGTCATCTTCCTCCACAGGAAGAGGATaGGGAACAGGGCAAGTTGGAAGCTCTCTTATTTTC | + |
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Preference number: 3 (lower is better) Translates to: ARHGSSSSTGRG*GTGQVGSSLIF Trigger: GAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAAGATGACCCATGGCGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CAA 90 bp | AGTGCAGTTACAAGTTGGCAACTGCAAAAGGACCCATGCCTCTGTGATGTAACATCCTGTATCTTTCCTTaGGTACTGCTGGCCAAGCGG | + |
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Preference number: 3 (lower is better) Translates to: SAVTSWQLQKDPCLCDVTSCIFP*VLLAKR Trigger: CCGCTTGGCCAGCAGTACCAAAGGAAAGATACAGGA...TGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 72 bp | TTCCTCCACAGGAAGAGGATGGGGAACAGGGCAAGTTaGAAGCTCTCTTATTTTCAGATGTGTTGGGAGAAC | + |
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Preference number: 3 (lower is better) Translates to: FLHRKRMGNRAS*KLSYFQMCWEN Trigger: GTTCTCCCAACACATCTGAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CAA 90 bp | GTTACAAGTTGGCAACTGCAAAAGGACCCATGCCTCTGTGATGTAACATTTCCATTGAGGGGCTGTGGCTaGTCCTGTATCTTTCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: VTSWQLQKDPCLCDVTFPLRGCG*SCIFPL Trigger: CAAAGGAAAGATACAGGACAAGCCACAGCCCCTCAA...TGGAAATGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR GCA 72 bp | AGTGCAGTTACAAGTTGGCAACTGCAAAAGGACCCATaGCTCTGTGATGTAACATTTCCAGACTCTATGCCT | + |
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Preference number: 3 (lower is better) Translates to: SAVTSWQLQKDP*LCDVTFPDSMP Trigger: AGGCATAGAGTCTGGAAATGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR GCA 72 bp | ATGCTTAGGACTGGGCTGGAATGTGTATGTATCAAGTaGAGTTACAAGTTGGCAACTGCAAAAGGACCCATG | + |
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Preference number: 3 (lower is better) Translates to: MLRTGLECVCIK*SYKLATAKGPM Trigger: CATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACTTGATACATACACATTCCAGCCCAGTCCTAAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 72 bp | GGCTGGAATGTGTATGTATCAAGTGCAGTTACAAGTTaGCAACTGCAAAAGGACCCATGCCTCTGTGATGTA | + |
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Preference number: 3 (lower is better) Translates to: GWNVYVSSAVTS*QLQKDPCLCDV Trigger: TACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACTTGATACATACACATTCCAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CAA 90 bp | CCATGCCTCTGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTAATAGGGGGGAACAGGGCAAGTaGGAAGCTCTCTTATTTTCA | + |
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Preference number: 3 (lower is better) Translates to: PCLCDVTFPDSMPLNSNRGEQGK*EALLFS Trigger: TGAAAATAAGAGAGCTTCCAACTTGCCCTGTTCCCC...CCTATTACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACAGAGGCATGG 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR-3UTR CAA 90 bp | CCATGCCTCTGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTAATAGGTTATTTTCAGATGTGTaGGGAGAACAACCTGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: PCLCDVTFPDSMPLNSNRLFSDV*GEQPVL Trigger: CAGAACAGGTTGTTCTCCCAACACATCTGAAAATAA...CCTATTACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACAGAGGCATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CCA 72 bp | AATCAGGTTTTATTTGAAAAGATGTCTACACTGTATTaGGTACCAACACAGACGACCAAGACACTACAGCTC | + |
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Preference number: 3 (lower is better) Translates to: NQVLFEKMSTLY*VPTQTTKTLQL Trigger: GAGCTGTAGTGTCTTGGTCGTCTGTGTTGGTACCCAATACAGTGTAGACATCTTTTCAAATAAAACCTGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR GCA 90 bp | CCATGGCTGTGGGTGGGGTGGGTGGGCACGCCATGGGTCATCTTCCTCCACAGGGTCCCACGCTCTCTCTaGGTTGGTACCAGAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: PWLWVGWVGTPWVIFLHRVPRSL*VGTRGA Trigger: GGCACCTCTGGTACCAACGCAGAGAGAGCGTGGGAC...CCTGTGGAGGAAGATGACCCATGGCGTGCCCACCCACCCCACCCACAGCCATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR GCA 90 bp | TGGGTGGGGTGGGTGGGCACGCCATGGGTCATCTTCCTCCACAGGAAGAGGATGCCTATAGTCCCTCCCTaGGCAGAGTCCCAGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: WVGWVGTPWVIFLHRKRMPIVPP*AESQNQ Trigger: TTGGTTCTGGGACTCTGCGCAGGGAGGGACTATAGG...CATCCTCTTCCTGTGGAGGAAGATGACCCATGGCGTGCCCACCCACCCCACCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR GCA 90 bp | TGGGCACGCCATGGGTCATCTTCCTCCACAGGAAGAGGATGGGGAACAGGGCAACGTTGGTACCAGAGGTaGCTTGCCAGTAGATTCATT | + |
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Preference number: 4 (lower is better) Translates to: WARHGSSSSTGRGWGTGQRWYQR*LASRFI Trigger: AATGAATCTACTGGCAAGGCACCTCTGGTACCAACG...TTGCCCTGTTCCCCATCCTCTTCCTGTGGAGGAAGATGACCCATGGCGTGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR GCA 90 bp | GAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTCTGTTTAGCTCTCCTATAGTCCCTCCCTaGGCAGAGTCCCAGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: EALLFSDVLGEQPVLFSSPIVPP*AESQNQ Trigger: TTGGTTCTGGGACTCTGCGCAGGGAGGGACTATAGG...AGAGCTAAACAGAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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| CDS-3UTR GCA 90 bp | GAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTCTGTTTAGCTCTCGTTGGTACCAGAGGTaGCTTGCCAGTAGATTCATT | + |
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Preference number: 4 (lower is better) Translates to: EALLFSDVLGEQPVLFSSRWYQR*LASRFI Trigger: AATGAATCTACTGGCAAGGCACCTCTGGTACCAACG...AGAGCTAAACAGAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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| CDS-3UTR TCA 90 bp | TTGGAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTCTGTTTAGCCCATCTCTATTGGGGTaGCTTGTTTTCTTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: LEALLFSDVLGEQPVLFSPSLLG*LVFLST Trigger: TGTGGACAAGAAAACAAGTCACCCCAATAGAGATGG...GCTAAACAGAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000119654.2 |
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| CDS-3UTR TCA 90 bp | TGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTAATAGGGACTGGCCATTATCTCTATTGGGGTaGCTTGTTTTCTTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: CDVTFPDSMPLNSNRDWPLSLLG*LVFLST Trigger: TGTGGACAAGAAAACAAGTCACCCCAATAGAGATAA...TGGCCAGTCCCTATTACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| 3UTR CAA 72 bp | GTTACAGTTGCTAAAGCTGGCGATACTGTCTTGGCTTaGCTCCATTTTCTAAGCATGTTGTCTTTTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: VTVAKAGDTVLA*LHFLSMLSFES Trigger: TGATTCAAAAGACAACATGCTTAGAAAATGGAGCAAAGCCAAGACAGTATCGCCAGCTTTAGCAACTGTAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS TCA 90 bp | ATGATTCCAACCAGGGTGACTACTGGCAAGCCATCTCTATTGGGGTaGCTTGTTTTCTTGTCCACAGAGTGGCTAGTCACCACTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: MIPTRVTTGKPSLLG*LVFLSTEWLVTTLT Trigger: TGTCAAAGTGGTGACTAGCCACTCTGTGGACAAGAAAACAAGTCACCCCAATAGAGATGGCTTGCCAGTAGTCACCCTGGTTGGAATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119654.2 |
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| CDS-3UTR CAA 90 bp | AGTGCAGTTACAAGTTGGCAACTGCAAAAGGACCCATGCCTCTGTGATGTAACACCTGTGGTTGTTATTTaGTCTTCTATACCTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: SAVTSWQLQKDPCLCDVTPVVVI*SSIPGG Trigger: GCCCCCAGGTATAGAAGACAAAATAACAACCACAGG...TGTTACATCACAGAGGCATGGGTCCTTTTGCAGTTGCCAACTTGTAACTGCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR CAA 90 bp | GAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTCTGTTTAGCTCTCCTGTGGTTGTTATTTaGTCTTCTATACCTGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: EALLFSDVLGEQPVLFSSPVVVI*SSIPGG Trigger: GCCCCCAGGTATAGAAGACAAAATAACAACCACAGG...AGAGCTAAACAGAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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| CDS-3UTR CAA 90 bp | TGTGATGTAACATTTCCAGACTCTATGCCTCTTAACAGTAATAGGGACTGGCCACATCTTTCTTATCTGTaGTCTGCGTTTCATCCCCTG | + |
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Preference number: 5 (lower is better) Translates to: CDVTFPDSMPLNSNRDWPHLSYL*SAFHPL Trigger: CAGGGGATGAAACGCAGACAACAGATAAGAAAGATG...TGGCCAGTCCCTATTACTGTTAAGAGGCATAGAGTCTGGAAATGTTACATCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030317.14 |
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| CDS-3UTR CAA 90 bp | AGTTGGAAGCTCTCTTATTTTCAGATGTGTTGGGAGAACAACCTGTTCTGTTTACTCTATTGGGGTGACTaGTTTTCTTGTCCACAGAGT | + |
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Preference number: 5 (lower is better) Translates to: SWKLSYFQMCWENNLFCLLYWGD*FSCPQS Trigger: ACTCTGTGGACAAGAAAACAAGTCACCCCAATAGAG...TAAACAGAACAGGTTGTTCTCCCAACACATCTGAAAATAAGAGAGCTTCCAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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| CDS CCA 72 bp | CGTGTTCTCTGTGATCATGGTCTGAGGTTGCTGAGGTaGACAGTTCCTCTAAGGGAGGCTTCGTCCCACGCT | + |
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Preference number: 6 (lower is better) Translates to: RVLCDHGLRLLR*TVPLREASSHA Trigger: AGCGTGGGACGAAGCCTCCCTTAGAGGAACTGTCCACCTCAGCAACCTCAGACCATGATCACAGAGAACACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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| CDS TCA 72 bp | ACCAGGGTGACTACTGGCAAGCCATCTCTATTGGGGTaGCTTGTTTTCTTGTCCACAGAGTGGCTAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: TRVTTGKPSLLG*LVFLSTEWLVT Trigger: GGTGACTAGCCACTCTGTGGACAAGAAAACAAGTCACCCCAATAGAGATGGCTTGCCAGTAGTCACCCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119654.2 |
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| CDS CAA 72 bp | TTGTACTCTCGTGTTCTCTGTGATCATGGTCTGAGGTaGCTGAGGTGGACAGTTCCTCTAAGGGAGGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: LYSRVLCDHGLR*LRWTVPLREAS Trigger: CGAAGCCTCCCTTAGAGGAACTGTCCACCTCAGCAACCTCAGACCATGATCACAGAGAACACGAGAGTACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030317.14 ENSMUST00000119654.2 |
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