Pregenerated sensors for PDLIM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020388Ensembl transcript IDs: ENSMUST00000018755.10, ENSMUST00000093109.11, ENSMUST00000144477.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTaGTTCTCACAGTACAGCCGTTCATCTAGGAAGAAGTACCCACGC | + |
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Preference number: 1 (lower is better) Translates to: ATTSYPSGGLTRALA*FSQYSRSSRKKYPR Trigger: GCGTGGGTACTTCTTCCTAGATGAACGGCTGTACTGTGAGAATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| 3UTR-3UTR TCA 90 bp | GCAGAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGATCCCTCCGGCGGCTTaGCTCGAGCCTTGGCGTGAT | + |
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Preference number: 2 (lower is better) Translates to: AEARQDFPAQTSSTLALGIPPAA*LEPWRD Trigger: ATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGAT...CCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| 3UTR CAA 90 bp | GAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATaGGGGTATACAGCCACCACATCATATCCCTCCGGCGGCTTGACT | + |
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Preference number: 2 (lower is better) Translates to: EARQDFPAQTSSTLA*GYTATTSYPSGGLT Trigger: AGTCAAGCCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| 3UTR TCA 72 bp | TCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTaGTTCTCACAGTACAGCCGTTCATCTAGGAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: SYPSGGLTRALA*FSQYSRSSRKK Trigger: CTTCTTCCTAGATGAACGGCTGTACTGTGAGAATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | TACAGCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTGATTGCGGAAGCCCCAGGGTaGAGGGCCGCGCAGGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: YSHHIISLRRLDSSLGVIAEAPG*RAAQGH Trigger: GTGACCCTGCGCGGCCCTTCACCCTGGGGCTTCCGC...AATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGCTGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AGCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTGATTCTCGCAGGGTGGCCTCGTTaGTGCTGCCATTGTGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SHHIISLRRLDSSLGVILAGWPR*CCHCEG Trigger: TCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGC...GAGAATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | AGCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTGATTCTCGCTGGACTGCAGTCCTaGGACTCAGGGTCAATGTGG | + |
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Preference number: 4 (lower is better) Translates to: SHHIISLRRLDSSLGVILAGLQS*DSGSMW Trigger: CCACATTGACCCTGAGTCCCAGGACTGCAGTCCAGC...GAGAATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | AGCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTGATTCTCGACTGGAAGGCGAGGTaGCTGACCATATGGAGATCC | + |
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Preference number: 4 (lower is better) Translates to: SHHIISLRRLDSSLGVILDWKAR*LTIWRS Trigger: GGATCTCCATATGGTCAGCCACCTCGCCTTCCAGTC...GAGAATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | AAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCGGCGGGTAGCGGAAGGATCCTaGCTGTTTCGGCTCCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KFHLSIGVYSHHIISLRRVAEGS*LFRLRG Trigger: GCCTCGGAGCCGAAACAGTCAGGATCCTTCCGCTAC...CCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | TACAGCCACCACATCATATCCCTCCGGCGGCTTGACTCGAGCCTTGGCGTGATTCATCCTGTATACCTCTaGACCCAGGTCTACCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: YSHHIISLRRLDSSLGVIHPVYL*TQVYPA Trigger: TGCAGGGTAGACCTGGGTTCAGAGGTATACAGGATG...AATCACGCCAAGGCTCGAGTCAAGCCGCCGGAGGGATATGATGTGGTGGCTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCGGCGGGTGGGTGGAGACACATaGAGAGCGCTCATCTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: KFHLSIGVYSHHIISLRRVGGDT*RALIWA Trigger: AGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCAC...CCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | TTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATGCAGAGCGCTCATCTaGGCTGGCAGGGTGGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: FPAQTSSTLALGYTATTSCRALI*AGRVAS Trigger: CGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCA...TGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCGGCGGTGGCCTCGTTGCTGCTaGCATTGTGAGGGACTGGAA | + |
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Preference number: 4 (lower is better) Translates to: KFHLSIGVYSHHIISLRRWPRCC*HCEGLE Trigger: TTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCA...CCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | GCAGAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGGGGTGGCCTCGTTGCTaGTGCCATTGTGAGGGACTG | + |
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Preference number: 4 (lower is better) Translates to: AEARQDFPAQTSSTLALGGWPRC*CHCEGL Trigger: CAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCC...CCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTCTGC 54% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCGCCAGCCTCTAGCATaGCCTGCAGGTAGCGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SSDKFHLSIGVYSHHIISRQPLA*PAGSGR Trigger: CCTTCCGCTACCTGCAGGGCATGCTAGAGGCTGGCG...GGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | TTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCGGCGGCTTAGGTGGCTGACCATATaGAGATCCCAGGCCCGATCT | + |
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Preference number: 4 (lower is better) Translates to: FHLSIGVYSHHIISLRRLRWLTI*RSQARS Trigger: AGATCGGGCCTGGGATCTCCATATGGTCAGCCACCT...AAGCCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | GATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCTGGGCTGGCAGGGTaGCCTCGTTGCTGCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: DFPAQTSSTLALGYTATTSGLAG*PRCCCH Trigger: ATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGA...TGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | AGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACTCGGCTCCGAGGCTGTaGGCTCTGCTGGCTCCCTTA | + |
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Preference number: 4 (lower is better) Translates to: RFSSSDKFHLSIGVYSHHSAPRL*ALLAPL Trigger: TAAGGGAGCCAGCAGAGCCCACAGCCTCGGAGCCGA...GTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | TCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCCTCCAGGTGTGTCATaGGCTCAGTGCTCTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: SDKFHLSIGVYSHHIISLPPGVS*AQCSRR Trigger: ACGGCGAGAGCACTGAGCTCATGACACACCTGGAGG...GAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AGCAGAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGAGACTGAGGAGCGCCTaGTGGTGGCTGGACTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SRGKTRFSSSDKFHLSIGRLRSA*WWLDCS Trigger: ACTGCAGTCCAGCCACCAGCAGGCGCTCCTCAGTCT...CCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | CAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCGCCATTGTGAGGGACTaGAAGGCGAGGTGGCTGACC | + |
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Preference number: 4 (lower is better) Translates to: QDFPAQTSSTLALGYTATAIVRD*KARWLT Trigger: GGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGC...GGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | GAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATAGCGCTCATCTGGGCTaGCAGGGTGGCCTCGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: EARQDFPAQTSSTLALGYSAHLG*QGGLVA Trigger: AGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCT...ATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | GATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACAGTCGGCACTGGTGGGTaGAGACACATGCAGAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: DFPAQTSSTLALGYTATTVGTGG*RHMQSA Trigger: AGCGCTCTGCATGTGTCTCCACCCACCAGTGCCGAC...TGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | GAGGCAAGACAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATGGAAGGCGAGGTGGCTaGCCATATGGAGATCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: EARQDFPAQTSSTLALGYGRRGG*PYGDPR Trigger: CCTGGGATCTCCATATGGTCAGCCACCTCGCCTTCC...ATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTGTCTTGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | CAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCTTGCTGCTGCCATTGTaGGGGACTGGAAGGCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QDFPAQTSSTLALGYTATLLLPL*GTGRRG Trigger: ACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAA...GGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | AGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACTGGCTGTGTCGGCACTaGTGGGTGGAGACACATGCA | + |
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Preference number: 4 (lower is better) Translates to: RFSSSDKFHLSIGVYSHHWLCRH*WVETHA Trigger: TGCATGTGTCTCCACCCACCAGTGCCGACACAGCCA...GTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | AAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCCTCCGGCGGTGTCATCAGGAGCACTaGGCCAGTTCTTATTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: KFHLSIGVYSHHIISLRRCHQEH*ASSYSQ Trigger: CTGAGAATAAGAACTGGCCCAGTGCTCCTGATGACA...CCGCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR CCA 90 bp | TTTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCCCTTTAATGCGGTTCTaGGCCTCCAGGTGTGTCATG | + |
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Preference number: 4 (lower is better) Translates to: FSSSDKFHLSIGVYSHHIPLMRF*ASRCVM Trigger: CATGACACACCTGGAGGCCCAGAACCGCATTAAAGG...GATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| 3UTR CAA 72 bp | CAAGATTTTCCAGCTCAGACAAGTTCCACCTTAGCATaGGGGTATACAGCCACCACATCATATCCCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: QDFPAQTSSTLA*GYTATTSYPSG Trigger: GCCGGAGGGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAAATCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR TCA 90 bp | TTTCCAGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCAACCGAGAGCGTAAGATaGTCGTGGCAGCCTTTAATG | + |
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Preference number: 4 (lower is better) Translates to: FPAQTSSTLALGYTATTSTESVR*SWQPLM Trigger: CATTAAAGGCTGCCACGATCATCTTACGCTCTCGGT...TGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS-3UTR GCA 90 bp | AGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCAATGTGGATCCTATGTaGTTGAGCCTTGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: SSDKFHLSIGVYSHHIISNVDPM*LSLVIR Trigger: CCTGATGACAAGGCTCAAGCACATAGGATCCACATT...GGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS GCA 90 bp | GACCACCAGACCCAGGCCGATCCCCGCCCTCGCCAGCCTCTAGCATaGCCTGCAGGTAGCGGAAGGATCCTGACTGTTTCGGCTCCGAGG | + |
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Preference number: 5 (lower is better) Translates to: DHQTQADPRPRQPLA*PAGSGRILTVSAPR Trigger: CCTCGGAGCCGAAACAGTCAGGATCCTTCCGCTACCTGCAGGGCATGCTAGAGGCTGGCGAGGGCGGGGATCGGCCTGGGTCTGGTGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS GCA 90 bp | GTTCCCACGATCCCGTGGCCGCAGCGCGTGCACTCTGGTAGCCCCTaGAGGCCACTCAGTGGAGCACCGAGCTTGCTGGCTGCTGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: VPTIPWPQRVHSGSP*RPLSGAPSLLAAGL Trigger: CAAACCAGCAGCCAGCAAGCTCGGTGCTCCACTGAGTGGCCTGCAGGGGCTACCAGAGTGCACGCGCTGCGGCCACGGGATCGTGGGAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS CCA 90 bp | GTCCCGGTTCCGAGGGAGAACCCTGGCTGTGTCGGCACTGGTGGGTaGAGACACATGCAGAGCGCTCATCTGGGCTGGCAGGGTGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: VPVPRENPGCVGTGG*RHMQSAHLGWQGGL Trigger: GAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCAGTGCCGACACAGCCAGGGTTCTCCCTCGGAACCGGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS CCA 90 bp | CTGGGCTGGCAGGGTGGCCTCGTTGCTGCTGCCATTGTGAGGGACTaGAAGGCGAGGTGGCTGACCATATGGAGATCCCAGGCCCGATCT | + |
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Preference number: 5 (lower is better) Translates to: LGWQGGLVAAAIVRD*KARWLTIWRSQARS Trigger: AGATCGGGCCTGGGATCTCCATATGGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 90 bp | TGGTGGGTGGAGACACATGCAGAGCGCTCATCTGGGCTGGCAGGGTaGCCTCGTTGCTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: WWVETHAERSSGLAG*PRCCCHCEGLEGEV Trigger: CACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 90 bp | GAGACACATGCAGAGCGCTCATCTGGGCTGGCAGGGTGGCCTCGTTaGTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTGGCTGACCAT | + |
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Preference number: 5 (lower is better) Translates to: ETHAERSSGLAGWPR*CCHCEGLEGEVADH Trigger: ATGGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 90 bp | TCTCTCGCCTTGACAATGGTTCCCCGCCCTCGCCAGCCTCTAGCATaGCCTGCAGGTAGCGGAAGGATCCTGACTGTTTCGGCTCCGAGG | + |
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Preference number: 5 (lower is better) Translates to: SLALTMVPRPRQPLA*PAGSGRILTVSAPR Trigger: CCTCGGAGCCGAAACAGTCAGGATCCTTCCGCTACCTGCAGGGCATGCTAGAGGCTGGCGAGGGCGGGGAACCATTGTCAAGGCGAGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS CCA 90 bp | GCCTCCAGGTGTGTCATGAGCTCAGTGCTCTCGCCGTTGATGGCTTaGATCAAGTCACCTGGGCACAGGGCAGCCAGGGCCGCTTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: ASRCVMSSVLSPLMA*IKSPGHRAARAALL Trigger: GAGCAAAGCGGCCCTGGCTGCCCTGTGCCCAGGTGACTTGATCCAAGCCATCAACGGCGAGAGCACTGAGCTCATGACACACCTGGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS TCA 90 bp | AGATCCCAGGCCCGATCTGTTGTCCTCCAGACTAATCCCAGAGACTaGGGAGCGCCTGCTGGTGGCTGGACTGCAGTCCTGGGACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: RSQARSVVLQTNPRD*GAPAGGWTAVLGLR Trigger: CCTGAGTCCCAGGACTGCAGTCCAGCCACCAGCAGGCGCTCCTCAGTCTCTGGGATTAGTCTGGAGGACAACAGATCGGGCCTGGGATCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 90 bp | GGTGGCCTCGTTGCTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTaGCTGACCATATGGAGATCCCAGGCCCGATCTGTTGTCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: GGLVAAAIVRDWKAR*LTIWRSQARSVVLQ Trigger: CTGGAGGACAACAGATCGGGCCTGGGATCTCCATATGGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 90 bp | CTGGCTCCCTTAACATCCTGTATACCTCTGAACCCAGGTCTACCCTaGAGTCCCGGTTCCGAGGGAGAACCCTGGCTGTGTCGGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: LAPLTSCIPLNPGLP*SPGSEGEPWLCRHW Trigger: CCAGTGCCGACACAGCCAGGGTTCTCCCTCGGAACCGGGACTGCAGGGTAGACCTGGGTTCAGAGGTATACAGGATGTTAAGGGAGCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS CCA 90 bp | GCTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTGGCTGACCATATaGAGATCCCAGGCCCGATCTGTTGTCCTCCAGACTAATCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: AAAIVRDWKARWLTI*RSQARSVVLQTNPR Trigger: TCTGGGATTAGTCTGGAGGACAACAGATCGGGCCTGGGATCTCCATATGGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS TCA 90 bp | CTGGGCCAGTTCTTATTCTCAGGCCTGCTGACCGAGAGCGTAAGATaGTCGTGGCAGCCTTTAATGCGGTTCTGGGCCTCCAGGTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: LGQFLFSGLLTESVR*SWQPLMRFWASRCV Trigger: GACACACCTGGAGGCCCAGAACCGCATTAAAGGCTGCCACGATCATCTTACGCTCTCGGTCAGCAGGCCTGAGAATAAGAACTGGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS TCA 90 bp | GGACTGCAGTCCTGGGACTCAGGGTCAATGTGGATCCTATGTGCTTaGGCCTTGTCATCAGGAGCACTGGGCCAGTTCTTATTCTCAGGC | + |
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Preference number: 5 (lower is better) Translates to: GLQSWDSGSMWILCA*ALSSGALGQFLFSG Trigger: GCCTGAGAATAAGAACTGGCCCAGTGCTCCTGATGACAAGGCTCAAGCACATAGGATCCACATTGACCCTGAGTCCCAGGACTGCAGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS-3UTR CAA 90 bp | AGCTCAGACAAGTTCCACCTTAGCATTGGGGTATACAGCCACCACATCATATCCAGCTTGTCTCTCGCCTaGACAATGGTTCCCCGCCCT | + |
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Preference number: 5 (lower is better) Translates to: SSDKFHLSIGVYSHHIISSLSLA*TMVPRP Trigger: AGGGCGGGGAACCATTGTCAAGGCGAGAGACAAGCT...GGATATGATGTGGTGGCTGTATACCCCAATGCTAAGGTGGAACTTGTCTGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093109.11 |
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| CDS CAA 90 bp | CCCTGCAGGCCACTCAGTGGAGCACCGAGCTTGCTGGCTGCTGGTTaGAGGTTCCGGGGACCACCAGACCCAGGCCGATCCCCGCCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PCRPLSGAPSLLAAG*RFRGPPDPGRSPPS Trigger: CGAGGGCGGGGATCGGCCTGGGTCTGGTGGTCCCCGGAACCTCAAACCAGCAGCCAGCAAGCTCGGTGCTCCACTGAGTGGCCTGCAGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS GCA 72 bp | ATCCCGTGGCCGCAGCGCGTGCACTCTGGTAGCCCCTaGAGGCCACTCAGTGGAGCACCGAGCTTGCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: IPWPQRVHSGSP*RPLSGAPSLLA Trigger: AGCCAGCAAGCTCGGTGCTCCACTGAGTGGCCTGCAGGGGCTACCAGAGTGCACGCGCTGCGGCCACGGGAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS CCA 72 bp | CAGGCCACTCAGTGGAGCACCGAGCTTGCTGGCTGCTaGTTTGAGGTTCCGGGGACCACCAGACCCAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: QATQWSTELAGC*FEVPGTTRPRP Trigger: CGGCCTGGGTCTGGTGGTCCCCGGAACCTCAAACCAGCAGCCAGCAAGCTCGGTGCTCCACTGAGTGGCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS GCA 72 bp | CGCTCATCTGGGCTGGCAGGGTGGCCTCGTTGCTGCTaGCATTGTGAGGGACTGGAAGGCGAGGTGGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: RSSGLAGWPRCC*HCEGLEGEVAD Trigger: GTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 72 bp | GAGCGCTCATCTGGGCTGGCAGGGTGGCCTCGTTGCTaGTGCCATTGTGAGGGACTGGAAGGCGAGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: ERSSGLAGWPRC*CHCEGLEGEVA Trigger: AGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 72 bp | GCAGAGCGCTCATCTGGGCTGGCAGGGTGGCCTCGTTaGTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: AERSSGLAGWPR*CCHCEGLEGEV Trigger: CACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 72 bp | ACCCAGGCCGATCCCCGCCCTCGCCAGCCTCTAGCATaGCCTGCAGGTAGCGGAAGGATCCTGACTGTTTCG | + |
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Preference number: 6 (lower is better) Translates to: TQADPRPRQPLA*PAGSGRILTVS Trigger: CGAAACAGTCAGGATCCTTCCGCTACCTGCAGGGCATGCTAGAGGCTGGCGAGGGCGGGGATCGGCCTGGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS GCA 72 bp | CTGCAGGCCACTCAGTGGAGCACCGAGCTTGCTGGCTaGTGGTTTGAGGTTCCGGGGACCACCAGACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LQATQWSTELAG*WFEVPGTTRPR Trigger: CCTGGGTCTGGTGGTCCCCGGAACCTCAAACCAGCAGCCAGCAAGCTCGGTGCTCCACTGAGTGGCCTGCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS CCA 72 bp | CCGAGGGAGAACCCTGGCTGTGTCGGCACTGGTGGGTaGAGACACATGCAGAGCGCTCATCTGGGCTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: PRENPGCVGTGG*RHMQSAHLGWQ Trigger: CTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCAGTGCCGACACAGCCAGGGTTCTCCCTCGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 72 bp | CCCGGTTCCGAGGGAGAACCCTGGCTGTGTCGGCACTaGTGGGTGGAGACACATGCAGAGCGCTCATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PGSEGEPWLCRH*WVETHAERSSG Trigger: CCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCAGTGCCGACACAGCCAGGGTTCTCCCTCGGAACCGGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS CAA 72 bp | CCACTCAGTGGAGCACCGAGCTTGCTGGCTGCTGGTTaGAGGTTCCGGGGACCACCAGACCCAGGCCGATCC | + |
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Preference number: 6 (lower is better) Translates to: PLSGAPSLLAAG*RFRGPPDPGRS Trigger: GGATCGGCCTGGGTCTGGTGGTCCCCGGAACCTCAAACCAGCAGCCAGCAAGCTCGGTGCTCCACTGAGTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS CCA 72 bp | GCACTGGTGGGTGGAGACACATGCAGAGCGCTCATCTaGGCTGGCAGGGTGGCCTCGTTGCTGCTGCCATTG | + |
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Preference number: 6 (lower is better) Translates to: ALVGGDTCRALI*AGRVASLLLPL Trigger: CAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCAGTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 72 bp | GGTTCCGAGGGAGAACCCTGGCTGTGTCGGCACTGGTaGGTGGAGACACATGCAGAGCGCTCATCTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GSEGEPWLCRHW*VETHAERSSGL Trigger: CAGCCCAGATGAGCGCTCTGCATGTGTCTCCACCCACCAGTGCCGACACAGCCAGGGTTCTCCCTCGGAACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 72 bp | TTGTCTCTCGCCTTGACAATGGTTCCCACGATCCCGTaGCCGCAGCGCGTGCACTCTGGTAGCCCCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: LSLALTMVPTIP*PQRVHSGSPCR Trigger: CCTGCAGGGGCTACCAGAGTGCACGCGCTGCGGCCACGGGATCGTGGGAACCATTGTCAAGGCGAGAGACAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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| CDS CAA 90 bp | CGGTTCTGGGCCTCCAGGTGTGTCATGAGCTCAGTGCTCTCGCCGTaGATGGCTTGGATCAAGTCACCTGGGCACAGGGCAGCCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: RFWASRCVMSSVLSP*MAWIKSPGHRAARA Trigger: GGCCCTGGCTGCCCTGTGCCCAGGTGACTTGATCCAAGCCATCAACGGCGAGAGCACTGAGCTCATGACACACCTGGAGGCCCAGAACCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS CAA 90 bp | GGCCTCCAGGTGTGTCATGAGCTCAGTGCTCTCGCCGTTGATGGCTaGGATCAAGTCACCTGGGCACAGGGCAGCCAGGGCCGCTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GLQVCHELSALAVDG*DQVTWAQGSQGRFA Trigger: AGCAAAGCGGCCCTGGCTGCCCTGTGCCCAGGTGACTTGATCCAAGCCATCAACGGCGAGAGCACTGAGCTCATGACACACCTGGAGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS TCA 72 bp | GCCCGATCTGTTGTCCTCCAGACTAATCCCAGAGACTaGGGAGCGCCTGCTGGTGGCTGGACTGCAGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: ARSVVLQTNPRD*GAPAGGWTAVL Trigger: CAGGACTGCAGTCCAGCCACCAGCAGGCGCTCCTCAGTCTCTGGGATTAGTCTGGAGGACAACAGATCGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 72 bp | GAGACACATGCAGAGCGCTCATCTGGGCTGGCAGGGTaGCCTCGTTGCTGCTGCCATTGTGAGGGACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: ETHAERSSGLAG*PRCCCHCEGLE Trigger: TTCCAGTCCCTCACAATGGCAGCAGCAACGAGGCCACCCTGCCAGCCCAGATGAGCGCTCTGCATGTGTCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS GCA 72 bp | TCCCAGAGACTGAGGAGCGCCTGCTGGTGGCTGGACTaGAGTCCTGGGACTCAGGGTCAATGTGGATCCTAT | + |
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Preference number: 6 (lower is better) Translates to: SQRLRSACWWLD*SPGTQGQCGSY Trigger: ATAGGATCCACATTGACCCTGAGTCCCAGGACTGCAGTCCAGCCACCAGCAGGCGCTCCTCAGTCTCTGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CAA 72 bp | GCCTCCAGGTGTGTCATGAGCTCAGTGCTCTCGCCGTaGATGGCTTGGATCAAGTCACCTGGGCACAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: ASRCVMSSVLSP*MAWIKSPGHRA Trigger: TGCCCTGTGCCCAGGTGACTTGATCCAAGCCATCAACGGCGAGAGCACTGAGCTCATGACACACCTGGAGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS CCA 72 bp | GTTGCTGCTGCCATTGTGAGGGACTGGAAGGCGAGGTaGCTGACCATATGGAGATCCCAGGCCCGATCTGTT | + |
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Preference number: 6 (lower is better) Translates to: VAAAIVRDWKAR*LTIWRSQARSV Trigger: AACAGATCGGGCCTGGGATCTCCATATGGTCAGCCACCTCGCCTTCCAGTCCCTCACAATGGCAGCAGCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CCA 72 bp | AGCGGAAGGATCCTGACTGTTTCGGCTCCGAGGCTGTaGGCTCTGCTGGCTCCCTTAACATCCTGTATACCT | + |
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Preference number: 6 (lower is better) Translates to: SGRILTVSAPRL*ALLAPLTSCIP Trigger: AGGTATACAGGATGTTAAGGGAGCCAGCAGAGCCCACAGCCTCGGAGCCGAAACAGTCAGGATCCTTCCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS GCA 72 bp | TTAACATCCTGTATACCTCTGAACCCAGGTCTACCCTaGAGTCCCGGTTCCGAGGGAGAACCCTGGCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LTSCIPLNPGLP*SPGSEGEPWLC Trigger: ACACAGCCAGGGTTCTCCCTCGGAACCGGGACTGCAGGGTAGACCTGGGTTCAGAGGTATACAGGATGTTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 |
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| CDS TCA 72 bp | TTCTTATTCTCAGGCCTGCTGACCGAGAGCGTAAGATaGTCGTGGCAGCCTTTAATGCGGTTCTGGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: FLFSGLLTESVR*SWQPLMRFWAS Trigger: GGAGGCCCAGAACCGCATTAAAGGCTGCCACGATCATCTTACGCTCTCGGTCAGCAGGCCTGAGAATAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS TCA 72 bp | TCCTGGGACTCAGGGTCAATGTGGATCCTATGTGCTTaGGCCTTGTCATCAGGAGCACTGGGCCAGTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: SWDSGSMWILCA*ALSSGALGQFL Trigger: TAAGAACTGGCCCAGTGCTCCTGATGACAAGGCTCAAGCACATAGGATCCACATTGACCCTGAGTCCCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018755.10 ENSMUST00000093109.11 ENSMUST00000144477.2 |
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| CDS CAA 72 bp | TACAGCCGTTCATCTAGGAAGAAGTACCCACGCTGTTaGAGATTCAGGCCGCAGTCGCTGCACATGAAGCAC | + |
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Preference number: 6 (lower is better) Translates to: YSRSSRKKYPRC*RFRPQSLHMKH Trigger: GTGCTTCATGTGCAGCGACTGCGGCCTGAATCTCAAACAGCGTGGGTACTTCTTCCTAGATGAACGGCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018755.10 |
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