Pregenerated sensors for PDLIM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055044Ensembl transcript IDs: ENSMUST00000068439.13
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTTCCAATGGACCAATGTCCATTTGCAGCAGAGAAGACTCCAAGTaGAGAAGGTGCATTGAGGTGTGGGTGAAGGGACAGGGACAAAAC | + |
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Preference number: 1 (lower is better) Translates to: SSNGPMSICSREDSK*RRCIEVWVKGQGQN Trigger: GTTTTGTCCCTGTCCCTTCACCCACACCTCAATGCACCTTCTTCACTTGGAGTCTTCTCTGCTGCAAATGGACATTGGTCCATTGGAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CCA 90 bp | CACACCATCTACAGTGTGTCTGTCTGTCTTTCTGTCTCGTGCATGTaGACTAAGACACAAGCTCTTAGTTTGTTCCTTCACTCCGCCATC | + |
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Preference number: 1 (lower is better) Translates to: HTIYSVSVCLSVSCM*TKTQALSLFLHSAI Trigger: GATGGCGGAGTGAAGGAACAAACTAAGAGCTTGTGTCTTAGTCCACATGCACGAGACAGAAAGACAGACAGACACACTGTAGATGGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR TCA 90 bp | AATGTCCATTTGCAGCAGAGAAGACTCCAAGTGAAGAAGGTGCATTaGGGTGTGGGTGAAGGGACAGGGACAAAACCATCTCCCAATAAT | + |
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Preference number: 1 (lower is better) Translates to: NVHLQQRRLQVKKVH*GVGEGTGTKPSPNN Trigger: ATTATTGGGAGATGGTTTTGTCCCTGTCCCTTCACCCACACCTCAATGCACCTTCTTCACTTGGAGTCTTCTCTGCTGCAAATGGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR TCA 90 bp | ACGCCACTTGCTGTCATGCCTCTCTACCAAGACTGTAAGCCCAAATaGACTAGTTCTTCTATAAGTTGCCTTCATCATGTTTTACCACAG | + |
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Preference number: 1 (lower is better) Translates to: TPLAVMPLYQDCKPK*TSSSISCLHHVLPQ Trigger: CTGTGGTAAAACATGATGAAGGCAACTTATAGAAGAACTAGTTCATTTGGGCTTACAGTCTTGGTAGAGAGGCATGACAGCAAGTGGCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR GCA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGATTCCGAGAACCAGGTaGAGCAGGCTGGCTGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: YGLPPTSELSATCGLASEIPRTR*SRLAGG Trigger: CCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAAT...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR GCA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGCGCCACTTGCTGTCATaGCTCTCTACCAAGACTGTA | + |
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Preference number: 2 (lower is better) Translates to: YGLPPTSELSATCGLASERHLLS*LSTKTV Trigger: TACAGTCTTGGTAGAGAGGCATGACAGCAAGTGGCG...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CAA 90 bp | TTAGGGAGAATGTACATCATTGGCCAGGTGCTGGGGATGCCTCATTaGCATAAGGGAGCATTCCAGGTGCTGCTGAATATGGCCTACCAC | + |
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Preference number: 2 (lower is better) Translates to: LGRMYIIGQVLGMPH*HKGAFQVLLNMAYH Trigger: GTGGTAGGCCATATTCAGCAGCACCTGGAATGCTCCCTTATGCAAATGAGGCATCCCCAGCACCTGGCCAATGATGTACATTCTCCCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR GCA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGGGACCAATGTCCATTTaGAGCAGAGAAGACTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: YGLPPTSELSATCGLASEGPMSI*SREDSK Trigger: CTTGGAGTCTTCTCTGCTGCAAATGGACATTGGTCC...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCGTGCAGCAGGCTGGCTaGAGGGCAGTAGACAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: GKSLTSLTTLETKPNRDSVQQAG*RAVDRA Trigger: TGCCCTGTCTACTGCCCTCCAGCCAGCCTGCTGCAC...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CAA 90 bp | TGTCTTTCTGTCTCGTGCATGTGGACTAAGACACAAGCTCTTAGTTaGTTCCTTCACTCCGCCATCATGGGCTCTCAGCACCTGAAACTG | + |
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Preference number: 2 (lower is better) Translates to: CLSVSCMWTKTQALS*FLHSAIMGSQHLKL Trigger: CAGTTTCAGGTGCTGAGAGCCCATGATGGCGGAGTGAAGGAACAAACTAAGAGCTTGTGTCTTAGTCCACATGCACGAGACAGAAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CCA 90 bp | AAATGGCTATTTAAACCTTTGTGGGGGATGAGTAGGGGCTTTAGGGAGAATGTAATGTCACCCTGCCAGTaGGAGTCAGTCAGCCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: KWLFKPLWGMSRGFRENVMSPCQ*ESVSPD Trigger: GTCTGGGCTGACTGACTCCCACTGGCAGGGTGACAT...TACATTCTCCCTAAAGCCCCTACTCATCCCCCACAAAGGTTTAAATAGCCATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR TCA 90 bp | TACATTTGGCTTAGTTCCAATGGACCAATGTCCATTTGCAGCAGAGAAGACTCCGTGAAGAAGGTGCATTaGGGTGTGGGTGAAGGGACA | + |
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Preference number: 2 (lower is better) Translates to: YIWLSSNGPMSICSREDSVKKVH*GVGEGT Trigger: TGTCCCTTCACCCACACCTCAATGCACCTTCTTCAC...GGAGTCTTCTCTGCTGCAAATGGACATTGGTCCATTGGAACTAAGCCAAATGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR TCA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGATTTGCTGTTCTCAATaGTGCTTACAGCAAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: YGLPPTSELSATCGLASEICCSQ*CLQQVT Trigger: TGTGACTTGCTGTAAGCATCATTGAGAACAGCAAAT...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR TCA 90 bp | AAATGGCTATTTAAACCTTTGTGGGGGATGAGTAGGGGCTTTAGGGAGAATGTAAGAAGTGTGTCACTGTaGACAGGCTTTGAGGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KWLFKPLWGMSRGFRENVRSVSL*TGFEVS Trigger: TGAGACCTCAAAGCCTGTTCACAGTGACACACTTCT...TACATTCTCCCTAAAGCCCCTACTCATCCCCCACAAAGGTTTAAATAGCCATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR TCA 90 bp | AAATTAGAATGGCCCCCACCAGCTCGCTTGTTTCACTATTCCAAACTTAGTAGAACTGTGAACAGGCTTTaGGGTCTCAAAAGACTCACA | + |
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Preference number: 2 (lower is better) Translates to: KLEWPPPARLFHYSKLSRTVNRL*GLKRLT Trigger: TGTGAGTCTTTTGAGACCTCAAAGCCTGTTCACAGT...TCTACTAAGTTTGGAATAGTGAAACAAGCGAGCTGGTGGGGGCCATTCTAATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR GCA 90 bp | CATACTCTAAGACGAACTGGAGGAGCTACCTACCTGTTATTTGGGAAATGTGGTATAGTAGCTTTCTCATaGCTGGGAAAAGCCTTACAT | + |
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Preference number: 2 (lower is better) Translates to: HTLRRTGGATYLLFGKCGIVAFS*LGKALH Trigger: ATGTAAGGCTTTTCCCAGGCATGAGAAAGCTACTAT...ACCACATTTCCCAAATAACAGGTAGGTAGCTCCTCCAGTTCGTCTTAGAGTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CCA 90 bp | TTCATGAAACAAGACATAGAACACAGGCAGAGTCAACTAAGAGGTCACACATTGCAGAGATACTACATTTaGCTTAGTTCCAATGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: FMKQDIEHRQSQLRGHTLQRYYI*LSSNGP Trigger: TGGTCCATTGGAACTAAGCCAAATGTAGTATCTCTG...CAATGTGTGACCTCTTAGTTGACTCTGCCTGTGTTCTATGTCTTGTTTCATGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CCA 72 bp | AGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTaGCTGGAGGGCAGTAGACAGGGCAGGTCCTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: RARIFREPGAAG*LEGSRQGRSSP Trigger: TGGAGAGGACCTGCCCTGTCTACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR GCA 72 bp | GGTCCCCAGTTGGTGGTGCTACGCCACTTGCTGTCATaGCTCTCTACCAAGACTGTAAGCCCAAATGAACTA | + |
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Preference number: 3 (lower is better) Translates to: GPQLVVLRHLLS*LSTKTVSPNEL Trigger: TAGTTCATTTGGGCTTACAGTCTTGGTAGAGAGGCATGACAGCAAGTGGCGTAGCACCACCAACTGGGGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CAA 90 bp | GTGCTACGCCACTTGCTGTCATGCCTCTCTACCAAGACTGTAAGCCCAAATGAATGGACCAATGTCCATTaGCAGCAGAGAAGACTCCAA | + |
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Preference number: 3 (lower is better) Translates to: VLRHLLSCLSTKTVSPNEWTNVH*QQRRLQ Trigger: TTGGAGTCTTCTCTGCTGCAAATGGACATTGGTCCA...TTCATTTGGGCTTACAGTCTTGGTAGAGAGGCATGACAGCAAGTGGCGTAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CAA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGGCTTTCTTCTATAAGTaGCCTGAGTCATGGTGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: YGLPPTSELSATCGLASEAFFYK*PESWCF Trigger: AAAACACCATGACTCAGGCAACTTATAGAAGAAAGC...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CAA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGCTACCTACCTGTTATTaGGGAAATGTGGTGATGAAA | + |
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Preference number: 3 (lower is better) Translates to: YGLPPTSELSATCGLASELPTCY*GNVVMK Trigger: TTTCATCACCACATTTCCCAAATAACAGGTAGGTAG...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CAA 90 bp | CCTACCTGTTATTTGGGAAATGTGGTGATGAAAATTAGAATGGCCCCCACCAGCGTAGATACGGTCTTGTaGGAAGAAGTGTGTCACTGT | + |
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Preference number: 3 (lower is better) Translates to: PTCYLGNVVMKIRMAPTSVDTVL*EEVCHC Trigger: ACAGTGACACACTTCTTCCAACAAGACCGTATCTAC...GCTGGTGGGGGCCATTCTAATTTTCATCACCACATTTCCCAAATAACAGGTAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR TCA 72 bp | TTGCAGGGAAATGGCTATTTAAACCTTTGTGGGGGATaGGTAGGGGCTTTAGGGAGAATGTACATCATTGGC | + |
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Preference number: 3 (lower is better) Translates to: LQGNGYLNLCGG*VGALGRMYIIG Trigger: GCCAATGATGTACATTCTCCCTAAAGCCCCTACTCATCCCCCACAAAGGTTTAAATAGCCATTTCCCTGCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR TCA 72 bp | TCTTGTTGGAAGAAGTGTGTCACTGTGAACAGGCTTTaGGGTCTCAAAAGACTCACACCATCTACAGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: SCWKKCVTVNRL*GLKRLTPSTVC Trigger: ACACACTGTAGATGGTGTGAGTCTTTTGAGACCTCAAAGCCTGTTCACAGTGACACACTTCTTCCAACAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR TCA 72 bp | AGTAGATACGGTCTTGTTGGAAGAAGTGTGTCACTGTaGACAGGCTTTGAGGTCTCAAAAGACTCACACCAT | + |
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Preference number: 3 (lower is better) Translates to: SRYGLVGRSVSL*TGFEVSKDSHH Trigger: ATGGTGTGAGTCTTTTGAGACCTCAAAGCCTGTTCACAGTGACACACTTCTTCCAACAAGACCGTATCTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR-3UTR CAA 90 bp | TTAAATGCTTTCTTCTATAAGTTGCCTGAGTCATGGTGTTTTCTCACCGTAATAGAAAAGAAACACAGCTaGTTCATAGTAGCTTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: LNAFFYKLPESWCFLTVIEKKHS*FIVAFS Trigger: TGAGAAAGCTACTATGAACAAGCTGTGTTTCTTTTC...TATTACGGTGAGAAAACACCATGACTCAGGCAACTTATAGAAGAAAGCATTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | GAGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGGCTGGAGGGCAGTCCTTGCTTCCGGGAGTaGCCCGGGAAATGGCGAGAG | + |
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Preference number: 4 (lower is better) Translates to: ERARIFREPGAAGWLEGSPCFRE*PGKWRE Trigger: CTCTCGCCATTTCCCGGGTCACTCCCGGAAGCAAGG...ACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | CTGTCTCGTGCATGTGGACTAAGACACAAGCTCTTAGTTTGTTCCTTCACTCCGAGCCCTCAGGCGGAGTaGCCCGCTCCCGGGCATGCT | + |
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Preference number: 4 (lower is better) Translates to: LSRACGLRHKLLVCSFTPSPQAE*PAPGHA Trigger: AGCATGCCCGGGAGCGGGTCACTCCGCCTGAGGGCT...CGGAGTGAAGGAACAAACTAAGAGCTTGTGTCTTAGTCCACATGCACGAGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGGGTGCTGGGAGCAGGTaGGGCAGTAAATGGCATGGC | + |
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Preference number: 4 (lower is better) Translates to: YGLPPTSELSATCGLASEGAGSR*GSKWHG Trigger: GCCATGCCATTTACTGCCTCACCTGCTCCCAGCACC...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | AGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGGCTGGAGGGCAGTATCAGGGTGGCGATGGTaGTCCCTCAGCTTCACAAAC | + |
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Preference number: 4 (lower is better) Translates to: REPEYSENQVQQAGWRAVSGWRW*SLSFTN Trigger: GTTTGTGAAGCTGAGGGATCACCATCGCCACCCTGA...TACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR GCA 90 bp | GAGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGGCTGGAGGGCAGTTGGGCACTTCCTATGTaGAGGACTTCTTGGGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ERARIFREPGAAGWLEGSWALPM*RTSWGS Trigger: GGAACCCCAAGAAGTCCTGCACATAGGAAGTGCCCA...ACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | GAGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGGCTGGAGGGCAGTCCCCATCGATGGCTGTaGTTAAATCTCCAATACATA | + |
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Preference number: 4 (lower is better) Translates to: ERARIFREPGAAGWLEGSPHRWL*LNLQYI Trigger: TATGTATTGGAGATTTAATCACAGCCATCGATGGGG...ACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CCA 90 bp | AAATGGCTATTTAAACCTTTGTGGGGGATGAGTAGGGGCTTTAGGGAGAATGTACAGGGACCCGGGCCCTaGAGAACAATCTGCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: KWLFKPLWGMSRGFRENVQGPGP*RTICWV Trigger: CACCCAGCAGATTGTTCTCCAGGGCCCGGGTCCCTG...TACATTCTCCCTAAAGCCCCTACTCATCCCCCACAAAGGTTTAAATAGCCATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CCA 90 bp | CATACTCTAAGACGAACTGGAGGAGCTACCTACCTGTTATTTGGGAAATGTGGTTCGCCTCCTCCCCACTaGCTGAGGTCTTCGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: HTLRRTGGATYLLFGKCGSPPPH*LRSSTP Trigger: TGGAGTCGAAGACCTCAGCCAGTGGGGAGGAGGCGA...ACCACATTTCCCAAATAACAGGTAGGTAGCTCCTCCAGTTCGTCTTAGAGTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CAA 72 bp | GTCTCGTGCATGTGGACTAAGACACAAGCTCTTAGTTaGTTCCTTCACTCCGCCATCATGGGCTCTCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: VSCMWTKTQALS*FLHSAIMGSQH Trigger: GTGCTGAGAGCCCATGATGGCGGAGTGAAGGAACAAACTAAGAGCTTGTGTCTTAGTCCACATGCACGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CAA 72 bp | ATGTACATCATTGGCCAGGTGCTGGGGATGCCTCATTaGCATAAGGGAGCATTCCAGGTGCTGCTGAATATG | + |
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Preference number: 4 (lower is better) Translates to: MYIIGQVLGMPH*HKGAFQVLLNM Trigger: CATATTCAGCAGCACCTGGAATGCTCCCTTATGCAAATGAGGCATCCCCAGCACCTGGCCAATGATGTACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCCAGACCTGGATACTGTaGGCGTCATGTTGTCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: GKSLTSLTTLETKPNRDSQTWIL*ASCCLR Trigger: GCGCAGACAACATGACGCTCACAGTATCCAGGTCTG...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| 3UTR CAA 72 bp | GTCTTGTTGGAAGAAGTGTGTCACTGTGAACAGGCTTaGAGGTCTCAAAAGACTCACACCATCTACAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: VLLEEVCHCEQA*RSQKTHTIYSV Trigger: CACACTGTAGATGGTGTGAGTCTTTTGAGACCTCAAAGCCTGTTCACAGTGACACACTTCTTCCAACAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR GCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCCCAAGTGTGTCATGCTaGTGGTATCTTCCCCATCGA | + |
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Preference number: 4 (lower is better) Translates to: GKSLTSLTTLETKPNRDSPSVSC*WYLPHR Trigger: TCGATGGGGAAGATACCAGCAGCATGACACACTTGG...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR GCA 90 bp | AAATTAGAATGGCCCCCACCAGCTCGCTTGTTTCACTATTCCAAACTTAGTAGAAGCATTTCCAACAGATaGAGCCACTTTGGTGACTGG | + |
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Preference number: 4 (lower is better) Translates to: KLEWPPPARLFHYSKLSRSISNR*SHFGDW Trigger: CCAGTCACCAAAGTGGCTGCATCTGTTGGAAATGCT...TCTACTAAGTTTGGAATAGTGAAACAAGCGAGCTGGTGGGGGCCATTCTAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCATCCTGATGGCTTGTTaGGATCCCCTTTCCCATCTG | + |
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Preference number: 4 (lower is better) Translates to: GKSLTSLTTLETKPNRDSILMAC*DPLSHL Trigger: CAGATGGGAAAGGGGATCCCAACAAGCCATCAGGAT...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR TCA 90 bp | TTAAATGCTTTCTTCTATAAGTTGCCTGAGTCATGGTGTTTTCTCACCGTAATAATCCCCTTTCCCATCTaGCTCCAGGATCTCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LNAFFYKLPESWCFLTVIIPFPI*LQDLLQ Trigger: CTGCAGGAGATCCTGGAGTCAGATGGGAAAGGGGAT...TATTACGGTGAGAAAACACCATGACTCAGGCAACTTATAGAAGAAAGCATTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR GCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCGAGCGTCATGTTGTCTaGGCAGCCCTTGATTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GKSLTSLTTLETKPNRDSERHVV*AALDFV Trigger: AACAAAATCAAGGGCTGCGCAGACAACATGACGCTC...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CCA 90 bp | GGGAAAAGCCTTACATCTCTCACAACTTTAGAAACCAAACCTAATAGAGACTCCATGTGCAGGACTTCTTaGGGTTCCGACGCTAAATTC | + |
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Preference number: 4 (lower is better) Translates to: GKSLTSLTTLETKPNRDSMCRTS*GSDAKF Trigger: GAATTTAGCGTCGGAACCCCAAGAAGTCCTGCACAT...GGAGTCTCTATTAGGTTTGGTTTCTAAAGTTGTGAGAGATGTAAGGCTTTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CCA 90 bp | TTAAATGCTTTCTTCTATAAGTTGCCTGAGTCATGGTGTTTTCTCACCGTAATAAGGATGTGGACTGTTTaGGGGGCTCGTTTAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LNAFFYKLPESWCFLTVIRMWTV*GARLIL Trigger: AAGAATTAAACGAGCCCCCCAAACAGTCCACATCCT...TATTACGGTGAGAAAACACCATGACTCAGGCAACTTATAGAAGAAAGCATTTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | AGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGGCTGGAGGGCAGTAGGAAATGGCGAGAGGTaGTTCGAAGTCCTTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: REPEYSENQVQQAGWRAVGNGER*FEVLAA Trigger: GGCGGCAAGGACTTCGAACAACCTCTCGCCATTTCC...TACTGCCCTCCAGCCAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | GACTGTCAGGGAGGAGAGAGCCAGAATATTCCGAGAACCAGGTGCAGCAGGCTGCTAAATCCTGATGGCTaGTTGGGATCCCCTTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: DCQGGESQNIPRTRCSRLLNPDG*LGSPFP Trigger: TGGGAAAGGGGATCCCAACAAGCCATCAGGATTTAG...CAGCCTGCTGCACCTGGTTCTCGGAATATTCTGGCTCTCTCCTCCCTGACAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | CAATGTCCATTTGCAGCAGAGAAGACTCCAAGTGAAGAAGGTGCATTGAGGTGTGGTTGTTCGAAGTCCTaGCCGCCCACGAGGCGGAAA | + |
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Preference number: 5 (lower is better) Translates to: QCPFAAEKTPSEEGALRCGCSKS*PPTRRK Trigger: TTTCCGCCTCGTGGGCGGCAAGGACTTCGAACAACC...ACACCTCAATGCACCTTCTTCACTTGGAGTCTTCTCTGCTGCAAATGGACATTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | CCTACCTGTTATTTGGGAAATGTGGTGATGAAAATTAGAATGGCCCCCACCAGCACTGTGAGCGTCATGTaGTCTGCGCAGCCCTTGATT | + |
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Preference number: 5 (lower is better) Translates to: PTCYLGNVVMKIRMAPTSTVSVM*SAQPLI Trigger: AATCAAGGGCTGCGCAGACAACATGACGCTCACAGT...GCTGGTGGGGGCCATTCTAATTTTCATCACCACATTTCCCAAATAACAGGTAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | TATGGCCTACCACCCACATCTGAGCTCTCTGCCACTTGTGGTCTTGCTTCTGAGGACTCCACAGCATTGTaGAAGTTAGAGATGTTTTCG | + |
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Preference number: 5 (lower is better) Translates to: YGLPPTSELSATCGLASEDSTAL*KLEMFS Trigger: CGAAAACATCTCTAACTTCAACAATGCTGTGGAGTC...CTCAGAAGCAAGACCACAAGTGGCAGAGAGCTCAGATGTGGGTGGTAGGCCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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| CDS-3UTR CAA 90 bp | CTGTCTCGTGCATGTGGACTAAGACACAAGCTCTTAGTTTGTTCCTTCACTCCGATACCAGTTCCACATTaGTCACAGATGGGCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: LSRACGLRHKLLVCSFTPIPVPH*SQMGSF Trigger: GAAGCTGCCCATCTGTGACAAATGTGGAACTGGTAT...CGGAGTGAAGGAACAAACTAAGAGCTTGTGTCTTAGTCCACATGCACGAGACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068439.13 |
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