Pregenerated sensors for PDK3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035232Ensembl transcript IDs: ENSMUST00000045748.7
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAAGATGAGCTCCACTGATGCATCCGACTGCCCAAGCCCTAGCTaGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGGAAGACTTCA | + |
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Preference number: 1 (lower is better) Translates to: FKMSSTDASDCPSPS*RFVSEMSSECWKTS Trigger: TGAAGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGGGCAGTCGGATGCATCAGTGGAGCTCATCTTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR GCA 90 bp | CCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCTGGTTGACTTaGAGAAGGTATTCTTTCTTCAGAGACTTCAGAGACAGCACTCAG | + |
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Preference number: 1 (lower is better) Translates to: PSWLRVGRNTRLWLT*RRYSFFRDFRDSTQ Trigger: CTGAGTGCTGTCTCTGAAGTCTCTGAAGAAAGAATACCTTCTGCAAGTCAACCAGAGACGCGTATTTCTACCAACTCTTAACCATGACGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR CCA 90 bp | CCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTaGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATA | + |
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Preference number: 1 (lower is better) Translates to: PSPSWRFVSEMSSEC*KTSDTKLHNKIQNI Trigger: TATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGGAAGACTACAATAGTGCCGTCATaGTTAAGAGTTGGTAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: PSPSWRFVSEMSSECWKTTIVPS*LRVGRN Trigger: ATTTCTACCAACTCTTAACCATGACGGCACTATTGT...AGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR CCA 90 bp | GATGTATATGGGACAGGAAGAACCCTGGTACTGAATTTTCAAGATGAGCTCCACATGAGCTCAGAATGCTaGAAGACTTCAGACACTAAA | + |
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Preference number: 2 (lower is better) Translates to: DVYGTGRTLVLNFQDELHMSSEC*KTSDTK Trigger: TTTAGTGTCTGAAGTCTTCCAGCATTCTGAGCTCAT...GTGGAGCTCATCTTGAAAATTCAGTACCAGGGTTCTTCCTGTCCCATATACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATAGGGTACCGTCTCTGGTTGACTTaGAGAAGGTATTCTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: CWKTSDTKLHNKIQNIGYRLWLT*RRYSFF Trigger: GAAGAAAGAATACCTTCTGCAAGTCAACCAGAGACG...GTACCCTATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATAGGGTACGACACAATGAAAAATTaGTCAAGCTTTAGTGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: CWKTSDTKLHNKIQNIGYDTMKN*SSFSGR Trigger: TCTTCCACTAAAGCTTGAGCAATTTTTCATTGTGTC...GTACCCTATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR CCA 72 bp | AGCTCCACTGATGCATCCGACTGCCCAAGCCCTAGCTaGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SSTDASDCPSPS*RFVSEMSSECW Trigger: CCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGGGCAGTCGGATGCATCAGTGGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR TCA 72 bp | TGGGACAGGAAGAACCCTGGTACTGAATTTTCAAGATaGGCTCCACTGATGCATCCGACTGCCCAAGCCCTA | + |
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Preference number: 3 (lower is better) Translates to: WDRKNPGTEFSR*APLMHPTAQAL Trigger: TAGGGCTTGGGCAGTCGGATGCATCAGTGGAGCTCATCTTGAAAATTCAGTACCAGGGTTCTTCCTGTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR TCA 72 bp | TCAGCTGAAGGGGGCACAAAGGTCCAAATCAGAGAGTaGAGGGTGATGTATATGGGACAGGAAGAACCCTGG | + |
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Preference number: 3 (lower is better) Translates to: SAEGGTKVQIRE*RVMYMGQEEPW Trigger: CCAGGGTTCTTCCTGTCCCATATACATCACCCTTCACTCTCTGATTTGGACCTTTGTGCCCCCTTCAGCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR TCA 72 bp | CCAAGTACCACACCTCACAATGAGAACCCAGTCAGCTaGAGGGGGCACAAAGGTCCAAATCAGAGAGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: PSTTPHNENPVS*RGHKGPNQRVK Trigger: CTTCACTCTCTGATTTGGACCTTTGTGCCCCCTTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR CAA 90 bp | GATGCATCCGACTGCCCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAAATACGCGTCTCTGGTaGACTTGCAGAAGGTATTCT | + |
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Preference number: 3 (lower is better) Translates to: DASDCPSPSWRFVSEMSSNTRLW*TCRRYS Trigger: AGAATACCTTCTGCAAGTCAACCAGAGACGCGTATT...TGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGGGCAGTCGGATGCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR TCA 72 bp | AAGGGGGCACAAAGGTCCAAATCAGAGAGTGAAGGGTaGTGTATATGGGACAGGAAGAACCCTGGTACTGAA | + |
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Preference number: 3 (lower is better) Translates to: KGAQRSKSESEG*CIWDRKNPGTE Trigger: TTCAGTACCAGGGTTCTTCCTGTCCCATATACATCACCCTTCACTCTCTGATTTGGACCTTTGTGCCCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR-3UTR CAA 90 bp | GATGTATATGGGACAGGAAGAACCCTGGTACTGAATTTTCAAGATGAGCTCCACGCGTCTCTGGTTGACTaGCAGAAGGTATTCTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: DVYGTGRTLVLNFQDELHASLVD*QKVFFL Trigger: AAGAAAGAATACCTTCTGCAAGTCAACCAGAGACGC...GTGGAGCTCATCTTGAAAATTCAGTACCAGGGTTCTTCCTGTCCCATATACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR CCA 72 bp | AAGCAACTAAGCATTGGGATAACAATAGTGCCGTCATaGTTAAGAGTTGGTAGAAATACGCGTCTCTGGTTG | + |
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Preference number: 3 (lower is better) Translates to: KQLSIGITIVPS*LRVGRNTRLWL Trigger: CAACCAGAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTATCCCAATGCTTAGTTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| 3UTR CCA 72 bp | AGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTaGAAGACTTCAGACACTAAACTCCATAACAAGATA | + |
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Preference number: 3 (lower is better) Translates to: SWRFVSEMSSEC*KTSDTKLHNKI Trigger: TATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | CAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAAGGGGGCACAAAGGTCGGGCCTTCAAATAAATaGCTGCATCGGTACCCACTC | + |
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Preference number: 4 (lower is better) Translates to: QVPHLTMRTQSAEGGTKVGPSNK*LHRYPL Trigger: GAGTGGGTACCGATGCAGTCATTTATTTGAAGGCCC...GACCTTTGTGCCCCCTTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | CCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGGAAGACTCCCTTGGTTCACTGCTaGGATTGCTCCAGTCATCAG | + |
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Preference number: 4 (lower is better) Translates to: PSPSWRFVSEMSSECWKTPLVHC*DCSSHQ Trigger: CTGATGACTGGAGCAATCCCAGCAGTGAACCAAGGG...AGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR GCA 90 bp | CAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAAGGGGGCACAAAGGTCCTTGTAATGGCGCCATaGAGACTTATTGAAAACTGG | + |
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Preference number: 4 (lower is better) Translates to: QVPHLTMRTQSAEGGTKVLVMAP*RLIENW Trigger: CCAGTTTTCAATAAGTCTGCATGGCGCCATTACAAG...GACCTTTGTGCCCCCTTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR GCA 90 bp | AGCTCCACTGATGCATCCGACTGCCCAAGCCCTAGCTGGAGGTTTGTATCAGAACTTGGCTGTTTCATATaGATCTTTAACCACATCAGC | + |
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Preference number: 4 (lower is better) Translates to: SSTDASDCPSPSWRFVSELGCFI*IFNHIS Trigger: GCTGATGTGGTTAAAGATGCATATGAAACAGCCAAG...TTCTGATACAAACCTCCAGCTAGGGCTTGGGCAGTCGGATGCATCAGTGGAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | CCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGGAAGACTAACTGTTGCCCTCATTaGGTTCTTGAACAGCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: PSPSWRFVSEMSSECWKTNCCPH*VLEQLK Trigger: TTTGAGCTGTTCAAGAACTCAATGAGGGCAACAGTT...AGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR GCA 90 bp | AACAAGATACAGAATATAGGGTACAAGAGCGCTAGGAGGTTCTGTGCTCTTTTGCATCCCTTGGTTCACTaGTGGGATTGCTCCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: NKIQNIGYKSARRFCALLHPLVH*WDCSSH Trigger: ATGACTGGAGCAATCCCAGCAGTGAACCAAGGGATG...CAAAAGAGCACAGAACCTCCTAGCGCTCTTGTACCCTATATTCTGTATCTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR GCA 90 bp | ACAGGTTCTAACATCCAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAACTTCAAATAAATGACTaGATCGGTACCCACTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: TGSNIQVPHLTMRTQSAELQIND*IGTHSF Trigger: GAAGGAGTGGGTACCGATGCAGTCATTTATTTGAAG...TTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTGGATGTTAGAACCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | ACAGGTTCTAACATCCAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAACTGAATGGGTTTGTTTaGCGCTTTGGCATTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: TGSNIQVPHLTMRTQSAELNGFV*RFGIEF Trigger: GAATTCAATGCCAAAGCGCCAAACAAACCCATTCAG...TTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTGGATGTTAGAACCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | CCAAGCCCTAGCTGGAGGTTTGTATCAGAAATGAGCTCAGAATGCTGGAAGACTTACCCACTCCTTCCATaGAATACAGTTTTAGATCTC | + |
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Preference number: 4 (lower is better) Translates to: PSPSWRFVSEMSSECWKTYPLLP*NTVLDL Trigger: GAGATCTAAAACTGTATTCCATGGAAGGAGTGGGTA...AGTCTTCCAGCATTCTGAGCTCATTTCTGATACAAACCTCCAGCTAGGGCTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | AACAAGATACAGAATATAGGGTACAAGAGCGCTAGGAGGTTCTGTGCTCTTTTGGGGACGAGGAGCAGTTaGGTACATGTAGTTAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: NKIQNIGYKSARRFCALLGTRSS*VHVVKK Trigger: CTTTTTAACTACATGTACTCAACTGCTCCTCGTCCC...CAAAAGAGCACAGAACCTCCTAGCGCTCTTGTACCCTATATTCTGTATCTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR GCA 90 bp | ATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCTGGTTGTATATGTTTCGGATGTaGAGGGTTAGTGTCACCACC | + |
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Preference number: 4 (lower is better) Translates to: ITIVPSWLRVGRNTRLWLYMFRM*RVSVTT Trigger: GGTGGTGACACTAACCCTGCACATCCGAAACATATA...CAACCAGAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | AACAAGATACAGAATATAGGGTACAAGAGCGCTAGGAGGTTCTGTGCTCTTTTGTACTCAATCACGCCTTaGGCCATTGTAGGAACAACA | + |
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Preference number: 4 (lower is better) Translates to: NKIQNIGYKSARRFCALLYSITP*AIVGTT Trigger: TGTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTA...CAAAAGAGCACAGAACCTCCTAGCGCTCTTGTACCCTATATTCTGTATCTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | GAAATGAGCTCAGAATGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACATCAGCTTCAGGAGTaGTCTTGTAATGGCGCCATG | + |
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Preference number: 4 (lower is better) Translates to: EMSSECWKTSDTKLHNKIHQLQE*SCNGAM Trigger: CATGGCGCCATTACAAGACCACTCCTGAAGCTGATG...TATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCATTCTGAGCTCATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | ACAGGTTCTAACATCCAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAACTCAAAGGATTCACTTaGAAGGGCCTTCAAATAAAT | + |
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Preference number: 4 (lower is better) Translates to: TGSNIQVPHLTMRTQSAELKGFT*KGLQIN Trigger: ATTTATTTGAAGGCCCTTTCAAGTGAATCCTTTGAG...TTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTGGATGTTAGAACCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | TGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATAGGGTACGCCATGCAGACTTATTaGAAACTGGCAGCCTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: CWKTSDTKLHNKIQNIGYAMQTY*KLAASQ Trigger: TTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGGC...GTACCCTATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | GAATGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATAGGGAGCTCAAATAGCATGTaGAACAGATGTGACGGCACA | + |
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Preference number: 4 (lower is better) Translates to: ECWKTSDTKLHNKIQNIGSSNSM*NRCDGT Trigger: TGTGCCGTCACATCTGTTTCACATGCTATTTGAGCT...CCCTATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | AAGGGTGATGTATATGGGACAGGAAGAACCCTGGTACTGAATTTTCAAGATGAGAGACTTATTGAAAACTaGCAGCCTCTCAAAGGATTC | + |
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Preference number: 4 (lower is better) Translates to: KGDVYGTGRTLVLNFQDERLIEN*QPLKGF Trigger: GAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCT...CTCATCTTGAAAATTCAGTACCAGGGTTCTTCCTGTCCCATATACATCACCCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR TCA 90 bp | ATTGGGATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCCGATCCAGGAAATATTaGATGTTACTGCTAATGAAC | + |
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Preference number: 4 (lower is better) Translates to: IGITIVPSWLRVGRNTRLRSRKY*MLLLMN Trigger: GTTCATTAGCAGTAACATTCAATATTTCCTGGATCG...GAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTATCCCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CCA 90 bp | GAATGCTGGAAGACTTCAGACACTAAACTCCATAACAAGATACAGAATATAGGGGGAAAGAAATGCGGTTaGTATAAAACCGATCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ECWKTSDTKLHNKIQNIGGKKCG*YKTDPG Trigger: TCCTGGATCGGTTTTATACCAACCGCATTTCTTTCC...CCCTATATTCTGTATCTTGTTATGGAGTTTAGTGTCTGAAGTCTTCCAGCATTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | CAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAAGGGGGCACAAAGGTCAAGTCCAGGAACTGTTaGATAGACAGTGGCGACGGG | + |
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Preference number: 5 (lower is better) Translates to: QVPHLTMRTQSAEGGTKVKSRNC*IDSGDG Trigger: CCCGTCGCCACTGTCTATCAAACAGTTCCTGGACTT...GACCTTTGTGCCCCCTTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS TCA 90 bp | CATCAGCTTCAGGAGTGGTCTTGTAATGGCGCCATGCAGACTTATTaGAAACTGGCAGCCTCTCAAAGGATTCACTTGAAAGGGCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: HQLQEWSCNGAMQTY*KLAASQRIHLKGPS Trigger: TGAAGGCCCTTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGGCGCCATTACAAGACCACTCCTGAAGCTGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | GGGCACAAAGGTCCAAATCAGAGAGTGAAGGGTGATGTATATGGGACAGGAAGAGCCCTCATTGAGTTCTaGAACAGCTCAAATAGCATG | + |
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Preference number: 5 (lower is better) Translates to: GHKGPNQRVKGDVYGTGRALIEF*NSSNSM Trigger: CATGCTATTTGAGCTGTTCAAGAACTCAATGAGGGC...TCTTCCTGTCCCATATACATCACCCTTCACTCTCTGATTTGGACCTTTGTGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS TCA 90 bp | CCATGCAGACTTATTGAAAACTGGCAGCCTCTCAAAGGATTCACTTaGAAGGGCCTTCAAATAAATGACTGCATCGGTACCCACTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: PCRLIENWQPLKGFT*KGLQINDCIGTHSF Trigger: GAAGGAGTGGGTACCGATGCAGTCATTTATTTGAAGGCCCTTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | ATTGGGATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCGTACTCAATCACGCCTaGGGCCATTGTAGGAACAAC | + |
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Preference number: 5 (lower is better) Translates to: IGITIVPSWLRVGRNTRLVLNHA*GHCRNN Trigger: GTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTAC...GAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTATCCCAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | GGTTCTAACATCCAAGTACCACACCTCACAATGAGAACCCAGTCAGCTGAAGGGCCGATCCAGGAAATATaGAATGTTACTGCTAATGAA | + |
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Preference number: 5 (lower is better) Translates to: GSNIQVPHLTMRTQSAEGPIQEI*NVTANE Trigger: TTCATTAGCAGTAACATTCAATATTTCCTGGATCGG...CCCTTCAGCTGACTGGGTTCTCATTGTGAGGTGTGGTACTTGGATGTTAGAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | ATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCTGGTTGATTTTGATGCATCCCTaGGTTCACTGCTGGGATTGC | + |
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Preference number: 5 (lower is better) Translates to: ITIVPSWLRVGRNTRLWLILMHP*VHCWDC Trigger: GCAATCCCAGCAGTGAACCAAGGGATGCATCAAAAT...CAACCAGAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | AAGGGTGATGTATATGGGACAGGAAGAACCCTGGTACTGAATTTTCAAGATGAGTTTGGCGCTTTGGCATaGAATTCTTCAACTTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: KGDVYGTGRTLVLNFQDEFGALA*NSSTSS Trigger: GCTAGAAGTTGAAGAATTCAATGCCAAAGCGCCAAA...CTCATCTTGAAAATTCAGTACCAGGGTTCTTCCTGTCCCATATACATCACCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | ATTGGGATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCGGGTCTTCTGGGCTCTaGTTTTCATATTCTAAAAGT | + |
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Preference number: 5 (lower is better) Translates to: IGITIVPSWLRVGRNTRLGSSGL*FSYSKS Trigger: ACTTTTAGAATATGAAAACAAGAGCCCAGAAGACCC...GAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTATCCCAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS-3UTR CAA 90 bp | ATAACAATAGTGCCGTCATGGTTAAGAGTTGGTAGAAATACGCGTCTCTGGTTGAAAGTTCTATTACTCTaGATCTTGTCCTGTTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: ITIVPSWLRVGRNTRLWLKVLLL*ILSCLA Trigger: GGCTAAACAGGACAAGATCAAGAGTAATAGAACTTT...CAACCAGAGACGCGTATTTCTACCAACTCTTAACCATGACGGCACTATTGTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS TCA 72 bp | CAGGAGTGGTCTTGTAATGGCGCCATGCAGACTTATTaGAAACTGGCAGCCTCTCAAAGGATTCACTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: QEWSCNGAMQTY*KLAASQRIHLK Trigger: TTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAGTCTGCATGGCGCCATTACAAGACCACTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS TCA 72 bp | CTTATTGAAAACTGGCAGCCTCTCAAAGGATTCACTTaGAAGGGCCTTCAAATAAATGACTGCATCGGTACC | + |
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Preference number: 6 (lower is better) Translates to: LIENWQPLKGFT*KGLQINDCIGT Trigger: GGTACCGATGCAGTCATTTATTTGAAGGCCCTTTCAAGTGAATCCTTTGAGAGGCTGCCAGTTTTCAATAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS CAA 90 bp | CATGCGGAAAGAAATGCGGTTGGTATAAAACCGATCCAGGAAATATaGAATGTTACTGCTAATGAACGGATCAAACCCGAACTTTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: HAERNAVGIKPIQEI*NVTANERIKPELFL Trigger: AAGGAAAAGTTCGGGTTTGATCCGTTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCTTTCCGCATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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| CDS CAA 72 bp | AGAAATGCGGTTGGTATAAAACCGATCCAGGAAATATaGAATGTTACTGCTAATGAACGGATCAAACCCGAA | + |
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Preference number: 6 (lower is better) Translates to: RNAVGIKPIQEI*NVTANERIKPE Trigger: TTCGGGTTTGATCCGTTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045748.7 |
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