Pregenerated sensors for PDK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006494Ensembl transcript IDs: ENSMUST00000006669.6
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCAGGCCAGCCATGAGCCTCACCTGGTCCCTGGCCTTCAGCCTCTaGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATCCTCAGA | + |
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Preference number: 1 (lower is better) Translates to: ARPAMSLTWSLAFSL*IPGWDPENLTLILR Trigger: TCTGAGGATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGGGACCAGGTGAGGCTCATGGCTGGCCTGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 90 bp | ATGAGCCTCACCTGGTCCCTGGCCTTCAGCCTCTGGATCCCTGGGTaGGACCCAGAGAATCTCACGCTCATCCTCAGATCACCTCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: MSLTWSLAFSLWIPG*DPENLTLILRSPQQ Trigger: CTGCTGAGGTGATCTGAGGATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGGGACCAGGTGAGGCTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | ACAGTGATCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTaGCTCTGGGTCACTGAGAGAGAACCCAGGTGTCATTACCTGCTC | + |
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Preference number: 1 (lower is better) Translates to: TVISRDSSGWGTNSV*LWVTEREPRCHYLL Trigger: GAGCAGGTAATGACACCTGGGTTCTCTCTCAGTGACCCAGAGTCACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR GCA 90 bp | TCTCAGCTAAGGATCTGGGCTGACCACCCTGGCGCATGCTCAGGCTaGATGTTCCTATCACTGGCACCAAAGTTCTATTTTGTGCCATGT | + |
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Preference number: 1 (lower is better) Translates to: SQLRIWADHPGACSG*MFLSLAPKFYFVPC Trigger: ACATGGCACAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAGGGTGGTCAGCCCAGATCCTTAGCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 90 bp | TTGGCTTGTTTTGGGACTAACGTTTCTCTTGTAAGCCAGATGTGGTaGCACACCCTTCTCATTCCAGCGCTCAGGACACCGAGGGCTTTG | + |
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Preference number: 1 (lower is better) Translates to: LACFGTNVSLVSQMW*HTLLIPALRTPRAL Trigger: CAAAGCCCTCGGTGTCCTGAGCGCTGGAATGAGAAGGGTGTGCCACCACATCTGGCTTACAAGAGAAACGTTAGTCCCAAAACAAGCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 90 bp | CATTTGGCTTGTTTTGGGACTAACGTTTCTCTTGTAAGCCAGATGTaGTGGCACACCCTTCTCATTCCAGCGCTCAGGACACCGAGGGCT | + |
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Preference number: 1 (lower is better) Translates to: HLACFGTNVSLVSQM*WHTLLIPALRTPRA Trigger: AGCCCTCGGTGTCCTGAGCGCTGGAATGAGAAGGGTGTGCCACCACATCTGGCTTACAAGAGAAACGTTAGTCCCAAAACAAGCCAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR GCA 90 bp | TGCCTCTGCCTCCCATGTGTTGGGATTAAAGGCGTGCGCCACCACTaGCTGGTGAAATATTCTTACAATCCTTTCCTACACTACACTGGC | + |
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Preference number: 1 (lower is better) Translates to: CLCLPCVGIKGVRHH*LVKYSYNPFLHYTG Trigger: GCCAGTGTAGTGTAGGAAAGGATTGTAAGAATATTTCACCAGGCAGTGGTGGCGCACGCCTTTAATCCCAACACATGGGAGGCAGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | TTAGAAAAATACATGTTCTTAGTCACCACTGGAAACCAAGGTGGCTaGGCCTTTGGTCACCTGACCTCTCGCTGTCACCCTGGTCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: LEKYMFLVTTGNQGG*AFGHLTSRCHPGLP Trigger: GGGAAGACCAGGGTGACAGCGAGAGGTCAGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAACATGTATTTTTCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | CATCACCTAACAGAGGAGGTTATAAATATCCCAGACAGTGGACAGTaGTCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTGAC | + |
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Preference number: 1 (lower is better) Translates to: HHLTEEVINIPDSGQ*SAETAQAGAPILCD Trigger: GTCACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGTCTGGGATATTTATAACCTCCTCTGTTAGGTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | GCCTCCCATGTGTTGGGATTAAAGGCGTGCGCCACCACTGCCTGGTaGAATATTCTTACAATCCTTTCCTACACTACACTGGCACACTCA | + |
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Preference number: 1 (lower is better) Translates to: ASHVLGLKACATTAW*NILTILSYTTLAHS Trigger: TGAGTGTGCCAGTGTAGTGTAGGAAAGGATTGTAAGAATATTTCACCAGGCAGTGGTGGCGCACGCCTTTAATCCCAACACATGGGAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 90 bp | TATTTTAGAAAAATACATGTTCTTAGTCACCACTGGAAACCAAGGTaGCTGAGCCTTTGGTCACCTGACCTCTCGCTGTCACCCTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: YFRKIHVLSHHWKPR*LSLWSPDLSLSPWS Trigger: AGACCAGGGTGACAGCGAGAGGTCAGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAACATGTATTTTTCTAAAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | TGTTCCTATCACTGGCACCAAAGTTCTATTTTGTGCCATGTCACATaGTTTGGCTTTTGTATTACAGATGTATGTATGTGTAGGACACAG | + |
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Preference number: 1 (lower is better) Translates to: CSYHWHQSSILCHVT*FGFCITDVCMCRTQ Trigger: CTGTGTCCTACACATACATACATCTGTAATACAAAAGCCAAATCATGTGACATGGCACAAAATAGAACTTTGGTGCCAGTGATAGGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | CTGAGAGAAGAATTAATAGTATTGAGAACACAAGTTAATCGGATATaGGAAGTTCCTTCAGTTAAAACAACCAAACCTAACCCTGGCCAC | + |
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Preference number: 1 (lower is better) Translates to: LREELIVLRTQVNRI*EVPSVKTTKPNPGH Trigger: GTGGCCAGGGTTAGGTTTGGTTGTTTTAACTGAAGGAACTTCTCATATCCGATTAACTTGTGTTCTCAATACTATTAATTCTTCTCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 90 bp | AATTCTGCTTCTATGTCTTCATGTAGAAATCTCAGTGTAAGACACTaGCCATTATTAAATGTAAAGGCATCAAAACCAGCCAGCATTTGG | + |
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Preference number: 1 (lower is better) Translates to: NSASMSSCRNLSVRH*PLLNVKASKPASIW Trigger: CCAAATGCTGGCTGGTTTTGATGCCTTTACATTTAATAATGGTCAGTGTCTTACACTGAGATTTCTACATGAAGACATAGAAGCAGAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR GCA 90 bp | TACAGGTGTGTGCCGCCATGCCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACCGGCGCATGCTCAGGCTaGATGTTCCTATCACTGGCA | + |
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Preference number: 2 (lower is better) Translates to: YRCVPPCRCNGERQAWWTGACSG*MFLSLA Trigger: TGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCC...GGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCTGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | TACAGGTGTGTGCCGCCATGCCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACCCACTGGAAACCAAGGTaGCTGAGCCTTTGGTCACCT | + |
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Preference number: 2 (lower is better) Translates to: YRCVPPCRCNGERQAWWTHWKPR*LSLWSP Trigger: AGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTG...GGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCTGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | AGGTGTGTGCCGCCATGCCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACCCACATCCCTCTAGGCAAGTaGCAAAGCATGTTTTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: RCVPPCRCNGERQAWWTHIPLGK*QSMFSK Trigger: CTTGGAAAACATGCTTTGCCACTTGCCTAGAGGGAT...GTGGGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | CTGGCGCATGCTCAGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGCTGGCCTTCAGCCTCTaGATCCCTGGGTGGGACCCA | + |
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Preference number: 2 (lower is better) Translates to: LAHAQAACSYHWHQSSILLAFSL*IPGWDP Trigger: TGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAG...CAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | ACAGTGGACAGTGATCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTGAGCAGAAACCACATGTaGATGTGCCAGGCGTCCCAT | + |
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Preference number: 2 (lower is better) Translates to: TVDSDQQRQLRLGHQFCVSRNHM*MCQASH Trigger: ATGGGACGCCTGGCACATCCACATGTGGTTTCTGCT...CACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | CTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATCCTCAGCTGTGTTGTTCTTCGTaGGAGATAAGAAGACCATCT | + |
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Preference number: 2 (lower is better) Translates to: LQPLDPWVGPRESHAHPQLCCSS*EIRRPS Trigger: AGATGGTCTTCTTATCTCCCACGAAGAACAACACAG...CTGAGGATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | TGGGACCCAGAGAATCTCACGCTCATCCTCAGATCACCTCAGCAGTCGGTCAGCCTGGACTTAGCTCCATaGGGAACCAGTCATTACAAT | + |
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Preference number: 2 (lower is better) Translates to: WDPENLTLILRSPQQSVSLDLAP*GTSHYN Trigger: ATTGTAATGACTGGTTCCCCATGGAGCTAAGTCCAG...GCTGACCGACTGCTGAGGTGATCTGAGGATGAGCGTGAGATTCTCTGGGTCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | TACAGGTGTGTGCCGCCATGCCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACCACACAGAGTGAAGACTaGATAAAACATGTCAAGAGT | + |
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Preference number: 2 (lower is better) Translates to: YRCVPPCRCNGERQAWWTTQSED*IKHVKS Trigger: ACTCTTGACATGTTTTATCCAGTCTTCACTCTGTGT...GGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CAA 90 bp | ACAGGGTCCGTACATGTAGCCTTGGCTAACCTGAAACTCCCTATGTaGACCAGGCTGGCTCAAGCTCAGAGATCTACTTACAGGTGTGTG | + |
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Preference number: 2 (lower is better) Translates to: TGSVHVALANLKLPM*TRLAQAQRSTYRCV Trigger: CACACACCTGTAAGTAGATCTCTGAGCTTGAGCCAGCCTGGTCAACATAGGGAGTTTCAGGTTAGCCAAGGCTACATGTACGGACCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | CTGGCGCATGCTCAGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGTCGGCCTGGGCCACTTaGTGCTTCCCAAACAGTTTA | + |
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Preference number: 2 (lower is better) Translates to: LAHAQAACSYHWHQSSILSAWAT*CFPNSL Trigger: TAAACTGTTTGGGAAGCACCAAGTGGCCCAGGCCGA...CAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | CCTGGCCTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATATATTTGGAACAGTGTaGTTCCAAATACATGTCTTC | + |
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Preference number: 2 (lower is better) Translates to: PGLQPLDPWVGPRESHAHIFGTV*FQIHVF Trigger: GAAGACATGTATTTGGAACCACACTGTTCCAAATAT...ATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR TCA 90 bp | ATTATTAAATGTAAAGGCATCAAAACCAGCCAGCATTTGGAATTACAGTGTGGACAGCCAGGCCAGCCATaGGCCTCACCTGGTCCCTGG | + |
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Preference number: 2 (lower is better) Translates to: IIKCKGIKTSQHLELQCGQPGQP*ASPGPW Trigger: CCAGGGACCAGGTGAGGCTCATGGCTGGCCTGGCTG...TCCACACTGTAATTCCAAATGCTGGCTGGTTTTGATGCCTTTACATTTAATAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGCGCATGCTCAGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGCAGTTTACTCTCTGCTaGCATTTGGCTTGTTTTGGG | + |
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Preference number: 2 (lower is better) Translates to: LAHAQAACSYHWHQSSILQFTLC*HLACFG Trigger: CCCAAAACAAGCCAAATGGCAGCAGAGAGTAAACTG...CAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR TCA 90 bp | ATACATGTTCTTAGTCACCACTGGAAACCAAGGTGGCTGAGCCTTTGGTCACCTTTCATTTCAGCACTCTaGCAACCTGTGTGGGTTCTA | + |
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Preference number: 2 (lower is better) Translates to: IHVLSHHWKPRWLSLWSPFISAL*QPVWVL Trigger: TAGAACCCACACAGGTTGTCAGAGTGCTGAAATGAA...AGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAACATGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR TCA 90 bp | ATCACTGGCACCAAAGTTCTATTTTGTGCCATGTCACATGATTTGGCTTTTGTAGGAAACCAAGGTGGCTaGGCCTTTGGTCACCTGACC | + |
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Preference number: 2 (lower is better) Translates to: ITGTKVLFCAMSHDLAFVGNQGG*AFGHLT Trigger: GGTCAGGTGACCAAAGGCTCAGCCACCTTGGTTTCC...TACAAAAGCCAAATCATGTGACATGGCACAAAATAGAACTTTGGTGCCAGTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | TATACGGTGTATATTTTCCAACATTTGGTAGTATTAGCTAAAAACCCTGGGCCAGTTCTTAGTCACCACTaGAAACCAAGGTGGCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: YTVYIFQHLVVLAKNPGPVLSHH*KPRWLS Trigger: GCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAAC...TGGCCCAGGGTTTTTAGCTAATACTACCAAATGTTGGAAAATATACACCGTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CAA 90 bp | CTACTCCACGTTCTTCAGATGCTTCTAGCAGAAGTAAGTGAAAACTaGAAAGAAATACTCAGCTTCCTACAGAAACCAGGAACTTCACAC | + |
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Preference number: 2 (lower is better) Translates to: LLHVLQMLLAEVSEN*KEILSFLQKPGTSH Trigger: GTGTGAAGTTCCTGGTTTCTGTAGGAAGCTGAGTATTTCTTTCAAGTTTTCACTTACTTCTGCTAGAAGCATCTGAAGAACGTGGAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CAA 90 bp | GGGTCACTGAGAGAGAACCCAGGTGTCATTACCTGCTCCATAGGTTaGTATTCTAACACAAATAACATCAATACTTCAAAGCGTTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: GSLRENPGVITCSIG*YSNTNNINTSKRLL Trigger: CAACAAACGCTTTGAAGTATTGATGTTATTTGTGTTAGAATACAAACCTATGGAGCAGGTAATGACACCTGGGTTCTCTCTCAGTGACCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGTGCCATGTCACATAAACAGTTTACTCTCTaGTGCCATTTGGCTTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: RLHVPITGTKVLFCAMSHKQFTL*CHLACF Trigger: AAAACAAGCCAAATGGCAGCAGAGAGTAAACTGTTT...ATGTGACATGGCACAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CAA 90 bp | CCTATCACTGGCACCAAAGTTCTATTTTGTGCCATGTCACATGATTaGGCTTTTGTATTACAGATGTATGTATGTGTAGGACACAGAGTG | + |
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Preference number: 2 (lower is better) Translates to: PITGTKVLFCAMSHD*AFVLQMYVCVGHRV Trigger: CACTCTGTGTCCTACACATACATACATCTGTAATACAAAAGCCAAATCATGTGACATGGCACAAAATAGAACTTTGGTGCCAGTGATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CAA 90 bp | TCCTCAATTAGAAACAGCAGGTATACGGTGTATATTTTCCAACATTaGGTAGTATTAGCTAAAAACCCTGGGCCAATAGGACCTGAGTTT | + |
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Preference number: 2 (lower is better) Translates to: SSIRNSRYTVYIFQH*VVLAKNPGPIGPEF Trigger: AAACTCAGGTCCTATTGGCCCAGGGTTTTTAGCTAATACTACCAAATGTTGGAAAATATACACCGTATACCTGCTGTTTCTAATTGAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR TCA 90 bp | TGGAAAATGACTTACTTATACAGCTCTTCAAAATTATCCACCAGTTCTCCAGCAGCTGGGGCTACACAGTaGGACTTTGTTTTTAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: WKMTYLYSSSKLSTSSPAAGATQ*DFVFKE Trigger: TTCTTTAAAAACAAAGTCTCACTGTGTAGCCCCAGC...TGCTGGAGAACTGGTGGATAATTTTGAAGAGCTGTATAAGTAAGTCATTTTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR GCA 90 bp | TGGAAAATGACTTACTTATACAGCTCTTCAAAATTATCCACCAGTTCTCCAGCAGATGATGAAACAGACTaGTGTCTAAAGGACACGAGT | + |
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Preference number: 2 (lower is better) Translates to: WKMTYLYSSSKLSTSSPADDETD*CLKDTS Trigger: ACTCGTGTCCTTTAGACAGCAGTCTGTTTCATCATC...TGCTGGAGAACTGGTGGATAATTTTGAAGAGCTGTATAAGTAAGTCATTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR-3UTR CCA 90 bp | CAAACACAAAAGGTAGAACAAGTGATACAGTCATTTAAGAATGCCAGGATTGTGCCATGTCACATGATTTaGCTTTTGTATTACAGATGT | + |
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Preference number: 2 (lower is better) Translates to: QTQKVEQVIQSFKNARIVPCHMI*LLYYRC Trigger: ACATCTGTAATACAAAAGCCAAATCATGTGACATGG...CACAATCCTGGCATTCTTAAATGACTGTATCACTTGTTCTACCTTTTGTGTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 72 bp | GCCATGAGCCTCACCTGGTCCCTGGCCTTCAGCCTCTaGATCCCTGGGTGGGACCCAGAGAATCTCACGCTC | + |
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Preference number: 3 (lower is better) Translates to: AMSLTWSLAFSL*IPGWDPENLTL Trigger: GAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGGGACCAGGTGAGGCTCATGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 72 bp | CCTCACCTGGTCCCTGGCCTTCAGCCTCTGGATCCCTaGGTGGGACCCAGAGAATCTCACGCTCATCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: PHLVPGLQPLDP*VGPRESHAHPQ Trigger: CTGAGGATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGGGACCAGGTGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 72 bp | CTGAGTTTCAGGCCCCTCACCTCTCAGCTAAGGATCTaGGCTGACCACCCTGGCGCATGCTCAGGCTGCATG | + |
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Preference number: 3 (lower is better) Translates to: LSFRPLTSQLRI*ADHPGACSGCM Trigger: CATGCAGCCTGAGCATGCGCCAGGGTGGTCAGCCCAGATCCTTAGCTGAGAGGTGAGGGGCCTGAAACTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 72 bp | TTTCAGGCCCCTCACCTCTCAGCTAAGGATCTGGGCTaGCCACCCTGGCGCATGCTCAGGCTGCATGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: FQAPHLSAKDLG*PPWRMLRLHVP Trigger: AGGAACATGCAGCCTGAGCATGCGCCAGGGTGGTCAGCCCAGATCCTTAGCTGAGAGGTGAGGGGCCTGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 72 bp | CCACTGGAAACCAAGGTGGCTGAGCCTTTGGTCACCTaGCCTCTCGCTGTCACCCTGGTCTTCCCGCTAATG | + |
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Preference number: 3 (lower is better) Translates to: PLETKVAEPLVT*PLAVTLVFPLM Trigger: CATTAGCGGGAAGACCAGGGTGACAGCGAGAGGTCAGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR GCA 72 bp | CCTCAGCAGTCGGTCAGCTCGGCCTGGGCCACTTGGTaGTTCCCAAACAGTTTACTCTCTGCTGCCATTTGG | + |
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Preference number: 3 (lower is better) Translates to: PQQSVSSAWATW*FPNSLLSAAIW Trigger: CCAAATGGCAGCAGAGAGTAAACTGTTTGGGAAGCACCAAGTGGCCCAGGCCGAGCTGACCGACTGCTGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR GCA 72 bp | CAAGCTCAGAGATCTACTTACAGGTGTGTGCCGCCATaGCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACC | + |
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Preference number: 3 (lower is better) Translates to: QAQRSTYRCVPP*RCNGERQAWWT Trigger: GGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCTGTAAGTAGATCTCTGAGCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 72 bp | AGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTaGCTCTGGGTCACTGAGAGAGAACCCAGGTGTCAT | + |
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Preference number: 3 (lower is better) Translates to: SRDSSGWGTNSV*LWVTEREPRCH Trigger: ATGACACCTGGGTTCTCTCTCAGTGACCCAGAGTCACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR CCA 72 bp | ATCCTCAGATCACCTCAGCAGTCGGTCAGCTCGGCCTaGGCCACTTGGTGCTTCCCAAACAGTTTACTCTCT | + |
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Preference number: 3 (lower is better) Translates to: ILRSPQQSVSSA*ATWCFPNSLLS Trigger: AGAGAGTAAACTGTTTGGGAAGCACCAAGTGGCCCAGGCCGAGCTGACCGACTGCTGAGGTGATCTGAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| 3UTR TCA 72 bp | GAGGAAAGATCTCCAACCCTATCCCTAACCCAGGCTTaGTGGCCATGCTTTTACCCACTGAGCCAGTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: EERSPTLSLTQA*WPCFYPLSQCW Trigger: CCAGCACTGGCTCAGTGGGTAAAAGCATGGCCATCAAGCCTGGGTTAGGGATAGGGTTGGAGATCTTTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | TACATGTTCTTAGTCACCACTGGAAACCAAGGTGGCTaGGCCTTTGGTCACCTGACCTCTCGCTGTCACCCT | + |
|
Preference number: 3 (lower is better) Translates to: YMFLVTTGNQGG*AFGHLTSRCHP Trigger: AGGGTGACAGCGAGAGGTCAGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAACATGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR GCA 72 bp | AGGATCTGGGCTGACCACCCTGGCGCATGCTCAGGCTaGATGTTCCTATCACTGGCACCAAAGTTCTATTTT | + |
|
Preference number: 3 (lower is better) Translates to: RIWADHPGACSG*MFLSLAPKFYF Trigger: AAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAGGGTGGTCAGCCCAGATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CCA 72 bp | TTTGGGACTAACGTTTCTCTTGTAAGCCAGATGTGGTaGCACACCCTTCTCATTCCAGCGCTCAGGACACCG | + |
|
Preference number: 3 (lower is better) Translates to: FGTNVSLVSQMW*HTLLIPALRTP Trigger: CGGTGTCCTGAGCGCTGGAATGAGAAGGGTGTGCCACCACATCTGGCTTACAAGAGAAACGTTAGTCCCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CCA 72 bp | TCACCTAACAGAGGAGGTTATAAATATCCCAGACAGTaGACAGTGATCAGCAGAGACAGCTCAGGCTGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: SPNRGGYKYPRQ*TVISRDSSGWG Trigger: GCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGTCTGGGATATTTATAACCTCCTCTGTTAGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | ACAGAGGAGGTTATAAATATCCCAGACAGTGGACAGTaGTCAGCAGAGACAGCTCAGGCTGGGGCACCAATT | + |
|
Preference number: 3 (lower is better) Translates to: TEEVINIPDSGQ*SAETAQAGAPI Trigger: AATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGTCTGGGATATTTATAACCTCCTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CCA 72 bp | CTACAGTGCAAGCCTGCCTCAAGCACTGCTAGGAGATaGTTGAGAGTGCAAGACACCTGGCTACAGTTATTA | + |
|
Preference number: 3 (lower is better) Translates to: LQCKPASSTARR*LRVQDTWLQLL Trigger: TAATAACTGTAGCCAGGTGTCTTGCACTCTCAACCATCTCCTAGCAGTGCTTGAGGCAGGCTTGCACTGTAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR GCA 72 bp | CTGGGCCACTTGGTGCTTCCCAAACAGTTTACTCTCTaGTGCCATTTGGCTTGTTTTGGGACTAACGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: LGHLVLPKQFTL*CHLACFGTNVS Trigger: AGAAACGTTAGTCCCAAAACAAGCCAAATGGCAGCAGAGAGTAAACTGTTTGGGAAGCACCAAGTGGCCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR GCA 72 bp | CTCCCATGTGTTGGGATTAAAGGCGTGCGCCACCACTaGCTGGTGAAATATTCTTACAATCCTTTCCTACAC | + |
|
Preference number: 3 (lower is better) Translates to: LPCVGIKGVRHH*LVKYSYNPFLH Trigger: GTGTAGGAAAGGATTGTAAGAATATTTCACCAGGCAGTGGTGGCGCACGCCTTTAATCCCAACACATGGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR-3UTR CAA 90 bp | ACAGTGGACAGTGATCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTGACTTCAAAGCGTTTGTaGCAGACTTTAAATCAACAC | + |
|
Preference number: 3 (lower is better) Translates to: TVDSDQQRQLRLGHQFCVTSKRL*QTLNQH Trigger: GTGTTGATTTAAAGTCTGCAACAAACGCTTTGAAGT...CACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | GTGTTGGGATTAAAGGCGTGCGCCACCACTGCCTGGTaGAATATTCTTACAATCCTTTCCTACACTACACTG | + |
|
Preference number: 3 (lower is better) Translates to: VLGLKACATTAW*NILTILSYTTL Trigger: CAGTGTAGTGTAGGAAAGGATTGTAAGAATATTTCACCAGGCAGTGGTGGCGCACGCCTTTAATCCCAACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | CCACGCTATCAACGAGCAATAGGACATACTCTGTCTTaGCTAAAGGAGATTCCACCAGTGTTGAGTAGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: PRYQRAIGHTLS*LKEIPPVLSRR Trigger: CCTTCTACTCAACACTGGTGGAATCTCCTTTAGTCAAGACAGAGTATGTCCTATTGCTCGTTGATAGCGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR GCA 72 bp | TCTGGGTCACTGAGAGAGAACCCAGGTGTCATTACCTaGTCCATAGGTTTGTATTCTAACACAAATAACATC | + |
|
Preference number: 3 (lower is better) Translates to: SGSLRENPGVIT*SIGLYSNTNNI Trigger: GATGTTATTTGTGTTAGAATACAAACCTATGGAGCAGGTAATGACACCTGGGTTCTCTCTCAGTGACCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | GGAGCTTCAGCAAACACTAATTGTGAAGATCACACGTaGAATATTTGGAACAGTGTGGTTCCAAATACATGT | + |
|
Preference number: 3 (lower is better) Translates to: GASANTNCEDHT*NIWNSVVPNTC Trigger: ACATGTATTTGGAACCACACTGTTCCAAATATTTCACGTGTGATCTTCACAATTAGTGTTTGCTGAAGCTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | ACTCCACGTTCTTCAGATGCTTCTAGCAGAAGTAAGTaGAAACTTGAAAGAAATACTCAGCTTCCTACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: TPRSSDASSRSK*KLERNTQLPTE Trigger: TTCTGTAGGAAGCTGAGTATTTCTTTCAAGTTTTCACTTACTTCTGCTAGAAGCATCTGAAGAACGTGGAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | CACTGGCACCAAAGTTCTATTTTGTGCCATGTCACATaGTTTGGCTTTTGTATTACAGATGTATGTATGTGT | + |
|
Preference number: 3 (lower is better) Translates to: HWHQSSILCHVT*FGFCITDVCMC Trigger: ACACATACATACATCTGTAATACAAAAGCCAAATCATGTGACATGGCACAAAATAGAACTTTGGTGCCAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR TCA 72 bp | TCTATGTCTTCATGTAGAAATCTCAGTGTAAGACACTaGCCATTATTAAATGTAAAGGCATCAAAACCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: SMSSCRNLSVRH*PLLNVKASKPA Trigger: GGCTGGTTTTGATGCCTTTACATTTAATAATGGTCAGTGTCTTACACTGAGATTTCTACATGAAGACATAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | CCTGGCCTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATCACCAGCTGTACGGATaGGGTCCTGAGAAGATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PGLQPLDPWVGPRESHAHHQLYG*GPEKIV Trigger: GACAATCTTCTCAGGACCCCATCCGTACAGCTGGTG...ATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | CTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATCCTCAGCGTCAGCCTCGTGGTTaGCTTTGTAATGCTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LQPLDPWVGPRESHAHPQRQPRG*LCNASR Trigger: CCTGGAAGCATTACAAAGCCAACCACGAGGCTGACG...CTGAGGATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | AGGTGTGTGCCGCCATGCCGCTGTAACGGTGAAAGGCAGGCGTGGTGGACCCACCTCTCATGGCATTCTTaGACAGTTCAAACACCATGT | + |
|
Preference number: 4 (lower is better) Translates to: RCVPPCRCNGERQAWWTHLSWHS*TVQTPC Trigger: ACATGGTGTTTGAACTGTTCAAGAATGCCATGAGAG...GTGGGTCCACCACGCCTGCCTTTCACCGTTACAGCGGCATGGCGGCACACACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | TGGGACCCAGAGAATCTCACGCTCATCCTCAGATCACCTCAGCAGTCGGTCAGCCATTGTGCCGGTTTCTaGTCCTTATCACTGTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WDPENLTLILRSPQQSVSHCAGF*SLSLCL Trigger: CAGACACAGTGATAAGGATCAGAAACCGGCACAATG...GCTGACCGACTGCTGAGGTGATCTGAGGATGAGCGTGAGATTCTCTGGGTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR GCA 90 bp | ACAGTGGACAGTGATCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTGCGCAGTTTGGATTTATaGTTCCAATGTGCTTTCGAT | + |
|
Preference number: 4 (lower is better) Translates to: TVDSDQQRQLRLGHQFCVRSLDL*FQCAFD Trigger: ATCGAAAGCACATTGGAAGCATAAATCCAAACTGCG...CACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | ATACATGTTCTTAGTCACCACTGGAAACCAAGGTGGCTGAGCCTTTGGTCACCTTATTCAGTCACACCCTaGGCCATGGTGGGAATGACA | + |
|
Preference number: 4 (lower is better) Translates to: IHVLSHHWKPRWLSLWSPYSVTP*AMVGMT Trigger: TGTCATTCCCACCATGGCCCAGGGTGTGACTGAATA...AGGTGACCAAAGGCTCAGCCACCTTGGTTTCCAGTGGTGACTAAGAACATGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CAA 72 bp | GTACATGTAGCCTTGGCTAACCTGAAACTCCCTATGTaGACCAGGCTGGCTCAAGCTCAGAGATCTACTTAC | + |
|
Preference number: 4 (lower is better) Translates to: VHVALANLKLPM*TRLAQAQRSTY Trigger: GTAAGTAGATCTCTGAGCTTGAGCCAGCCTGGTCAACATAGGGAGTTTCAGGTTAGCCAAGGCTACATGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | CCAAGGGTAGTTGACCAAAATTATGTGTGTTCAAAACCACGCCCAATTAACCCAGAACATTTTGGCTGGTaGCAGGATCCACCCCGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: PRVVDQNYVCSKPRPINPEHFGW*QDPPRS Trigger: GCTTCGGGGTGGATCCTGTCACCAGCCAAAATGTTC...TGGGTTAATTGGGCGTGGTTTTGAACACACATAATTTTGGTCAACTACCCTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | ACAGTGGACAGTGATCAGCAGAGACAGCTCAGGCTGGGGCACCAATTCTGTGTGGTGATAGAGATGGGATaGTACATAAACCACTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: TVDSDQQRQLRLGHQFCVVIEMG*YINHLY Trigger: ATACAAGTGGTTTATGTACCATCCCATCTCTATCAC...CACACAGAATTGGTGCCCCAGCCTGAGCTGTCTCTGCTGATCACTGTCCACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | CTGGCGCATGCTCAGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGTGTCGGGGAGGAGGCTaGTTTCTTTCATTATATTTG | + |
|
Preference number: 4 (lower is better) Translates to: LAHAQAACSYHWHQSSILCRGGG*FLSLYL Trigger: CAAATATAATGAAAGAAATCAGCCTCCTCCCCGACA...CAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR GCA 90 bp | CTGGCGCATGCTCAGGCTGCATGTTCCTATCACTGGCACCAAAGTTCTATTTTGGGAATGACATCATTGTaGCGGTTTCTGATCCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: LAHAQAACSYHWHQSSILGMTSL*RFLILI Trigger: GATAAGGATCAGAAACCGGCACAATGATGTCATTCC...CAAAATAGAACTTTGGTGCCAGTGATAGGAACATGCAGCCTGAGCATGCGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGCTGCTTCATGGAGAGTaGCGACGGCGAGAAGCGCGC | + |
|
Preference number: 4 (lower is better) Translates to: SMIYYFLQSPQLETAGIRLLHGE*RRREAR Trigger: GCGCGCTTCTCGCCGTCGCCACTCTCCATGAAGCAG...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | TGGAAAATGACTTACTTATACAGCTCTTCAAAATTATCCACCAGTTCTCCAGCAGTCGATCTTCCTCAGTaGAACACCGCCTCCCCGGTC | + |
|
Preference number: 4 (lower is better) Translates to: WKMTYLYSSSKLSTSSPAVDLPQ*NTASPV Trigger: GACCGGGGAGGCGGTGTTCCACTGAGGAAGATCGAC...TGCTGGAGAACTGGTGGATAATTTTGAAGAGCTGTATAAGTAAGTCATTTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | CAAACACAAAAGGTAGAACAAGTGATACAGTCATTTAAGAATGCCAGGATTGTGGTACGGATGGGGTCCTaGGAAGATTGTCGGGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QTQKVEQVIQSFKNARIVVRMGS*EDCRGG Trigger: TCCTCCCCGACAATCTTCTCAGGACCCCATCCGTAC...CACAATCCTGGCATTCTTAAATGACTGTATCACTTGTTCTACCTTTTGTGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGCCGCGTGGTGCTCCATaGTCGCTCTCATGGCATTCT | + |
|
Preference number: 4 (lower is better) Translates to: SMIYYFLQSPQLETAGIRPRGAP*SLSWHS Trigger: AGAATGCCATGAGAGCGACCATGGAGCACCACGCGG...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CCA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGGTGCTTTCGATGAGATaGACTTCCTTTTCCACCGAA | + |
|
Preference number: 4 (lower is better) Translates to: SMIYYFLQSPQLETAGIRVLSMR*TSFSTE Trigger: TTCGGTGGAAAAGGAAGTCCATCTCATCGAAAGCAC...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR TCA 90 bp | ATTATTAAATGTAAAGGCATCAAAACCAGCCAGCATTTGGAATTACAGTGTGGACGATCCAAAAAGTACTaGACATTTTGGCTGGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: IIKCKGIKTSQHLELQCGRSKKY*TFWLVT Trigger: TGTCACCAGCCAAAATGTTCAGTACTTTTTGGATCG...TCCACACTGTAATTCCAAATGCTGGCTGGTTTTGATGCCTTTACATTTAATAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CAA 72 bp | AGAGAGAACCCAGGTGTCATTACCTGCTCCATAGGTTaGTATTCTAACACAAATAACATCAATACTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RENPGVITCSIG*YSNTNNINTSK Trigger: CTTTGAAGTATTGATGTTATTTGTGTTAGAATACAAACCTATGGAGCAGGTAATGACACCTGGGTTCTCTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| 3UTR CAA 72 bp | AGGCAAAGAAAAGTGGACAGCACACTGTTTAATTCTTaGCAAACACAAAAGGTAGAACAAGTGATACAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: RQRKVDSTLFNS*QTQKVEQVIQS Trigger: TGACTGTATCACTTGTTCTACCTTTTGTGTTTGCAAAGAATTAAACAGTGTGCTGTCCACTTTTCTTTGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | CCTGGCCTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATAAAGTACTGAACATTTaGGCTGGTGACAGGATCCAC | + |
|
Preference number: 5 (lower is better) Translates to: PGLQPLDPWVGPRESHAHKVLNI*AGDRIH Trigger: GTGGATCCTGTCACCAGCCAAAATGTTCAGTACTTT...ATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | GGCGTGCGCCACCACTGCCTGGTGAAATATTCTTACAATCCTTTCCTACACTACACCCCGAAGCTCTCCTaGTATTCAGTCACACCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: GVRHHCLVKYSYNPFLHYTPKLS*YSVTPW Trigger: CCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGT...GTAGTGTAGGAAAGGATTGTAAGAATATTTCACCAGGCAGTGGTGGCGCACGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | CCTGGCCTTCAGCCTCTGGATCCCTGGGTGGGACCCAGAGAATCTCACGCTCATGCATCTTCAGCACTTTaGTCTTTAAAATCAAGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: PGLQPLDPWVGPRESHAHASSAL*SLKSSN Trigger: GTTGCTTGATTTTAAAGACAAAAGTGCTGAAGATGC...ATGAGCGTGAGATTCTCTGGGTCCCACCCAGGGATCCAGAGGCTGAAGGCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS CCA 90 bp | AGCGTTCTCATAGCCATCTTTAATGACCTCCACCACGTCGCAGTTTaGATTTATGCTTCCAATGTGCTTTCGATGAGATGGACTTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: SVLIAIFNDLHHVAV*IYASNVLSMRWTSF Trigger: AAAGGAAGTCCATCTCATCGAAAGCACATTGGAAGCATAAATCCAAACTGCGACGTGGTGGAGGTCATTAAAGATGGCTATGAGAACGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGGGGGTCCTGAGAAGATaGTCGGGGAGGAGGCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: SMIYYFLQSPQLETAGIRGVLRR*SGRRLI Trigger: AATCAGCCTCCTCCCCGACAATCTTCTCAGGACCCC...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | CAGTGTGGTTCCAAATACATGTCTTCCAAATTTAGCAGAAACCACATGTGGATGGTGGGAATGACATCATaGTGCCGGTTTCTGATCCTT | + |
|
Preference number: 5 (lower is better) Translates to: QCGSKYMSSKFSRNHMWMVGMTS*CRFLIL Trigger: AAGGATCAGAAACCGGCACAATGATGTCATTCCCAC...CATCCACATGTGGTTTCTGCTAAATTTGGAAGACATGTATTTGGAACCACACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | TATACGGTGTATATTTTCCAACATTTGGTAGTATTAGCTAAAAACCCTGGGCCAGCTCTCATGGCATTCTaGAACAGTTCAAACACCATG | + |
|
Preference number: 5 (lower is better) Translates to: YTVYIFQHLVVLAKNPGPALMAF*NSSNTM Trigger: CATGGTGTTTGAACTGTTCAAGAATGCCATGAGAGC...TGGCCCAGGGTTTTTAGCTAATACTACCAAATGTTGGAAAATATACACCGTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | CAAACACAAAAGGTAGAACAAGTGATACAGTCATTTAAGAATGCCAGGATTGTGTCTAACAGGCAACTCTaGTCGCAGAAACATAAACGA | + |
|
Preference number: 5 (lower is better) Translates to: QTQKVEQVIQSFKNARIVSNRQL*SQKHKR Trigger: TCGTTTATGTTTCTGCGACAAGAGTTGCCTGTTAGA...CACAATCCTGGCATTCTTAAATGACTGTATCACTTGTTCTACCTTTTGTGTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGCAACTCCTGAAGGCTTaGGATATACCAACTTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: SMIYYFLQSPQLETAGIRQLLKA*DIPTLH Trigger: GTGCAAAGTTGGTATATCCAAAGCCTTCAGGAGTTG...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS-3UTR CAA 90 bp | AGCATGATCTATTATTTCTTACAAAGTCCTCAATTAGAAACAGCAGGTATACGGCATAAACCACTTGTATaGTCTGTCCTGGTGATTTCG | + |
|
Preference number: 5 (lower is better) Translates to: SMIYYFLQSPQLETAGIRHKPLV*SVLVIS Trigger: CGAAATCACCAGGACAGACAATACAAGTGGTTTATG...CCGTATACCTGCTGTTTCTAATTGAGGACTTTGTAAGAAATAATAGATCATGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS TCA 72 bp | GGCTACGGCTGGCGCAGGGGACGGCGCAGAGCGGCCTaGCGCTCGTGCCGCCCCGCAGCAGCCTTGCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: GYGWRRGRRRAA*RSCRPAAALPA Trigger: GGCTGGCAAGGCTGCTGCGGGGCGGCACGAGCGTCAGGCCGCTCTGCGCCGTCCCCTGCGCCAGCCGTAGCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS GCA 72 bp | GTCACACCCTGGGCCATGGTGGGAATGACATCATTGTaGCGGTTTCTGATCCTTATCACTGTGTCTGTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: VTPWAMVGMTSL*RFLILITVSVN Trigger: ATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATTCCCACCATGGCCCAGGGTGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
||
| CDS CCA 72 bp | GATGGACTTCCTTTTCCACCGAACAATAAGGAGTGCTaGTTGAGTAGCATTCTAATTGAGATGCGACTCATG | + |
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Preference number: 6 (lower is better) Translates to: DGLPFPPNNKEC*LSSILIEMRLM Trigger: CATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACTCCTTATTGTTCGGTGGAAAAGGAAGTCCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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| CDS TCA 72 bp | TCTTCAGCACTTTTGTCTTTAAAATCAAGCAACTCCTaGAGGCTTTGGATATACCAACTTTGCACCAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SSALLSLKSSNS*RLWIYQLCTSC Trigger: ACAGCTGGTGCAAAGTTGGTATATCCAAAGCCTTCAGGAGTTGCTTGATTTTAAAGACAAAAGTGCTGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006669.6 |
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