Pregenerated sensors for PDHX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010914Ensembl transcript IDs: ENSMUST00000011058.9, ENSMUST00000111183.2, ENSMUST00000132449.8
Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTATAGGGTTGCAGACCCCTTCAGCTCCTTGTATACTTTCTCTTaGTTCTCCATTGGAAGCCCTGTGCTCCATCCAATAGATGAGCAT | + |
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Preference number: 1 (lower is better) Translates to: SYRVADPFSSLYTFS*FSIGSPVLHPIDEH Trigger: ATGCTCATCTATTGGATGGAGCACAGGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTCTGCAACCCTATAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR TCA 90 bp | AGGTACAAACCCAGCTGCTCCCCCAACTTTATAAGGTCAGGTCTCTaGACAAACGACTCTTTAGTTTTTCTTCCTCTGTCTTCATTCCTA | + |
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Preference number: 1 (lower is better) Translates to: RYKPSCSPNFIRSGL*TNDSLVFLPLSSFL Trigger: TAGGAATGAAGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATAAAGTTGGGGGAGCAGCTGGGTTTGTACCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| 3UTR GCA 90 bp | TGCCTACGTAAAGATGTCAGATCAGTTCTTACTGAGTTAATTCAATaGATCTCATTAATGACCATGTTCTCCGCCACCTGCAGACCGACA | + |
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Preference number: 1 (lower is better) Translates to: CLRKDVRSVLTELIQ*ISLMTMFSATCRPT Trigger: TGTCGGTCTGCAGGTGGCGGAGAACATGGTCATTAATGAGATGCATTGAATTAACTCAGTAAGAACTGATCTGACATCTTTACGTAGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR CAA 90 bp | TCATATTGTTGTTCCTCCTATAGGGTTGCAGACCCCTTCAGCTCCTaGTATACTTTCTCTTGCTTCTCCATTGGAAGCCCTGTGCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SYCCSSYRVADPFSS*YTFSCFSIGSPVLH Trigger: ATGGAGCACAGGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAACAACAATATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR-3UTR TCA 90 bp | GGTCTTTGTTGTACCTTTATTAGGCTAAATTCCACTAGAGAAAGGCCCATCTATCAGATCAGTTCTTACTaGGTTAATTCAATGCATCTC | + |
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Preference number: 2 (lower is better) Translates to: GLCCTFIRLNSTRERPIYQISSY*VNSMHL Trigger: GAGATGCATTGAATTAACTCAGTAAGAACTGATCTG...ATAGATGGGCCTTTCTCTAGTGGAATTTAGCCTAATAAAGGTACAACAAAGACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR GCA 72 bp | AGATCAACTGCAGCTTTTCCAGTAAAACACTCTCCCTaGCTCTGTGAGACAGGGCCTCACCGCGTAGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: RSTAAFPVKHSP*LCETGPHRVAQ Trigger: CTGGGCTACGCGGTGAGGCCCTGTCTCACAGAGGCAGGGAGAGTGTTTTACTGGAAAAGCTGCAGTTGATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| 3UTR-3UTR CAA 90 bp | TGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCGTTCCTCCTATAGGGTaGCAGACCCCTTCAGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: CVGAYNLRKSKGLSSKDGVPPIG*QTPSAP Trigger: AGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAAC...GCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR-3UTR CAA 90 bp | GCCCTGGCATTCCCCTGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCCTTGTATACTTTCTCTaGCTTCTCCATTGGAAGCCC | + |
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Preference number: 3 (lower is better) Translates to: ALAFPCVGAYNLRKSKGLLVYFL*LLHWKP Trigger: GGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAG...GAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR-3UTR CAA 90 bp | TATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCCAACTAGGCCATTCTCTTGCTTCTCCATaGGAAGCCCTGTGCTCCATC | + |
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Preference number: 3 (lower is better) Translates to: YNLRKSKGLSSKDGQLGHSLASP*EALCSI Trigger: GATGGAGCACAGGGCTTCCAATGGAGAAGCAAGAGA...ATGGCCTAGTTGGCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR TCA 72 bp | CTTCTCCATTGGAAGCCCTGTGCTCCATCCAATAGATaGGCATCCACTTCTGTATTTGCCAGGCACTGGCAA | + |
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Preference number: 3 (lower is better) Translates to: LLHWKPCAPSNR*ASTSVFARHWQ Trigger: TTGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCATCTATTGGATGGAGCACAGGGCTTCCAATGGAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR-3UTR CAA 90 bp | TATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCCAACTAGGCCATGACCCCTTCAGCTCCTaGTATACTTTCTCTTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: YNLRKSKGLSSKDGQLGHDPFSS*YTFSCF Trigger: GAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTC...ATGGCCTAGTTGGCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR GCA 72 bp | GTTGCAGACCCCTTCAGCTCCTTGTATACTTTCTCTTaGTTCTCCATTGGAAGCCCTGTGCTCCATCCAATA | + |
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Preference number: 3 (lower is better) Translates to: VADPFSSLYTFS*FSIGSPVLHPI Trigger: TATTGGATGGAGCACAGGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTCTGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR TCA 72 bp | CCCAGCTGCTCCCCCAACTTTATAAGGTCAGGTCTCTaGACAAACGACTCTTTAGTTTTTCTTCCTCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: PSCSPNFIRSGL*TNDSLVFLPLS Trigger: AGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATAAAGTTGGGGGAGCAGCTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| 3UTR-3UTR CAA 90 bp | GGTCTTTGTTGTACCTTTATTAGGCTAAATTCCACTAGAGAAAGGCCCATCTATCATCCACTTCTGTATTaGCCAGGCACTGGCAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: GLCCTFIRLNSTRERPIYHPLLY*PGTGKA Trigger: GGCTTTGCCAGTGCCTGGCAAATACAGAAGTGGATG...ATAGATGGGCCTTTCTCTAGTGGAATTTAGCCTAATAAAGGTACAACAAAGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR GCA 72 bp | CACTCTAGTCATTTAACCACACTTAGAGTCACACATTaGTATGAGGATCTCACATGTGGTTACAGGCCCATT | + |
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Preference number: 3 (lower is better) Translates to: HSSHLTTLRVTH*YEDLTCGYRPI Trigger: AATGGGCCTGTAACCACATGTGAGATCCTCATAGCAATGTGTGACTCTAAGTGTGGTTAAATGACTAGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR GCA 72 bp | AAAGATGTCAGATCAGTTCTTACTGAGTTAATTCAATaGATCTCATTAATGACCATGTTCTCCGCCACCTGC | + |
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Preference number: 3 (lower is better) Translates to: KDVRSVLTELIQ*ISLMTMFSATC Trigger: GCAGGTGGCGGAGAACATGGTCATTAATGAGATGCATTGAATTAACTCAGTAAGAACTGATCTGACATCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR GCA 72 bp | ATACAAAGATGTACCAATTTCTTGACTAGAAAGACTTaGCTACGTAAAGATGTCAGATCAGTTCTTACTGAG | + |
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Preference number: 3 (lower is better) Translates to: IQRCTNFLTRKT*LRKDVRSVLTE Trigger: CTCAGTAAGAACTGATCTGACATCTTTACGTAGGCAAGTCTTTCTAGTCAAGAAATTGGTACATCTTTGTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR TCA 90 bp | GCCCTGGCATTCCCCTGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCAGCGGCTGGTTACAGTaGAGCCTCCAGGAGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: ALAFPCVGAYNLRKSKGLSGWLQ*SLQEAA Trigger: GGCGGCCTCCTGGAGGCTTCACTGTAACCAGCCGCT...GAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CCA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTATCCCGCGAGGGCCTGTaGCTGTGCCCTGGCTGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QLASKRASFLNLSQRLRLSREGL*LCPGWR Trigger: ACGCCAGCCAGGGCACAGCCACAGGCCCTCGCGGGA...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | TTTCCAGTAAAACACTCTCCCTGCCTCTGTGAGACAGGGCCTCACCGCGTAGCCCCCAGGAATGGATACTaGTGGGGTCATTGGCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: FPVKHSPCLCETGPHRVAPRNGY*WGHWPR Trigger: CCTCGGCCAATGACCCCACCAGTATCCATTCCTGGG...GGCTACGCGGTGAGGCCCTGTCTCACAGAGGCAGGGAGAGTGTTTTACTGGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTACAAGCAGCAGCACCCTaGGCCAGTCCCAGGCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: QLASKRASFLNLSQRLRLQAAAP*ASPRLR Trigger: TCGAAGCCTGGGACTGGCTCAGGGTGCTGCTGCTTG...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | TATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCCAACTAGGCCATGAGGGCCTGTGGCTGTaGCCTGGCTGGCGTCCAATG | + |
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Preference number: 4 (lower is better) Translates to: YNLRKSKGLSSKDGQLGHEGLWL*PGWRPM Trigger: CATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTC...ATGGCCTAGTTGGCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR CAA 72 bp | TCCACTCCCACTTCCTGGCCCTGGCATTCCCCTGTGTaGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: STPTSWPWHSPV*GHIIFASPRAS Trigger: AGAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR TCA 90 bp | TGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCGGCTGTGGAGAGGGCTaGGTAGGAGCTGGTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CVGAYNLRKSKGLSSKDGGCGEG*VGAGGF Trigger: AAAACCACCAGCTCCTACTCAGCCCTCTCCACAGCC...GCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR GCA 90 bp | TTTCCAGTAAAACACTCTCCCTGCCTCTGTGAGACAGGGCCTCACCGCGTAGCCCAGCGAACTCATCGATaGCAAACATCCCCAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: FPVKHSPCLCETGPHRVAQRTHR*QTSPSW Trigger: CCAACTTGGGGATGTTTGGCATCGATGAGTTCGCTG...GGCTACGCGGTGAGGCCCTGTCTCACAGAGGCAGGGAGAGTGTTTTACTGGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | GCCCTGGCATTCCCCTGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTGGCTGTGCCCTGGCTaGCGTCCAATGAATGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: ALAFPCVGAYNLRKSKGLWLCPG*RPMNVF Trigger: AAAAACATTCATTGGACGCCAGCCAGGGCACAGCCA...GAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR TCA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTACGTTTGCATCTAAGGTaGCCACAGCCTTGTCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: QLASKRASFLNLSQRLRLRLHLR*PQPCPS Trigger: AGACGGACAAGGCTGTGGTCACCTTAGATGCAAACG...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | AGCCACTCTAGTCATTTAACCACACTTAGAGTCACACATTGCTATGAGGATCTCCAAGCAGCAGCACCCTaGGCCAGTCCCAGGCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: SHSSHLTTLRVTHCYEDLQAAAP*ASPRLR Trigger: TCGAAGCCTGGGACTGGCTCAGGGTGCTGCTGCTTG...GAGATCCTCATAGCAATGTGTGACTCTAAGTGTGGTTAAATGACTAGAGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CCA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTATCCTTGGTACTCCTCTaGCATCAATTTCCCATCCCG | + |
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Preference number: 4 (lower is better) Translates to: QLASKRASFLNLSQRLRLSLVLL*HQFPIP Trigger: CGGGATGGGAAATTGATGCCAGAGGAGTACCAAGGA...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | TATAAGGTCAGGTCTCTGAACAAACGACTCTTTAGTTTTTCTTCCTCTGTCTTCAGCGGCTGGTTACAGTaGAGCCTCCAGGAGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: YKVRSLNKRLFSFSSSVFSGWLQ*SLQEAA Trigger: GGCGGCCTCCTGGAGGCTTCACTGTAACCAGCCGCT...GAAGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| 3UTR CAA 72 bp | GGTTGCAGACCCCTTCAGCTCCTTGTATACTTTCTCTaGCTTCTCCATTGGAAGCCCTGTGCTCCATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GCRPLQLLVYFL*LLHWKPCAPSN Trigger: ATTGGATGGAGCACAGGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTCTGCAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR GCA 90 bp | TGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCTTCACAATGTTCCCTTaGTCCATCGTAGGAGACAGT | + |
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Preference number: 4 (lower is better) Translates to: CVGAYNLRKSKGLSSKDGFTMFP*SIVGDS Trigger: ACTGTCTCCTACGATGGAGCAAGGGAACATTGTGAA...GCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| 3UTR CAA 72 bp | TGTTCCTCCTATAGGGTTGCAGACCCCTTCAGCTCCTaGTATACTTTCTCTTGCTTCTCCATTGGAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: CSSYRVADPFSS*YTFSCFSIGSP Trigger: AGGGCTTCCAATGGAGAAGCAAGAGAAAGTATACAAGGAGCTGAAGGGGTCTGCAACCCTATAGGAGGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR TCA 90 bp | GCTTTCGCCTTAAATAAATACGCACTTCATCTACTCCATACTGAACACCCAATCGGCTGTGGAGAGGGCTaGGTAGGAGCTGGTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: AFALNKYALHLLHTEHPIGCGEG*VGAGGF Trigger: AAAACCACCAGCTCCTACTCAGCCCTCTCCACAGCC...GATTGGGTGTTCAGTATGGAGTAGATGAAGTGCGTATTTATTTAAGGCGAAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | TTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGAAGAGGGTGGAGGAGCTaGGGCTGGTCTGGATTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LLVRLSSHISTVHVQGRGRGWRS*GWSGFS Trigger: ACTGAATCCAGACCAGCCTCAGCTCCTCCACCCTCT...TCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATGAGGGCCTGTGGCTGTaGCCTGGCTGGCGTCCAATG | + |
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Preference number: 4 (lower is better) Translates to: PTKCSLLVRLSSHISTVHEGLWL*PGWRPM Trigger: CATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTC...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | TTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGACCTGTGGCTGTGCCCTaGCTGGCGTCCAATGAATGT | + |
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Preference number: 4 (lower is better) Translates to: LLVRLSSHISTVHVQGRGPVAVP*LASNEC Trigger: ACATTCATTGGACGCCAGCCAGGGCACAGCCACAGG...TCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | GCTTTCGCCTTAAATAAATACGCACTTCATCTACTCCATACTGAACACCCAATCAGAGGGCAGCTGCTTTaGGCCTTCTCCATCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: AFALNKYALHLLHTEHPIRGQLL*AFSIPG Trigger: ACCTGGGATGGAGAAGGCCCAAAGCAGCTGCCCTCT...GATTGGGTGTTCAGTATGGAGTAGATGAAGTGCGTATTTATTTAAGGCGAAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | GTTTACATTAGTTTAATGCCTTCTGTACAGCACCAGAGGTTAAAAGTGGATCTGTGGTGCTGCTGCAGTTaGGGGTTCCCCTCTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: VYISLMPSVQHQRLKVDLWCCCS*GFPSSS Trigger: GGATGAAGAGGGGAACCCTCAACTGCAGCAGCACCA...CAGATCCACTTTTAACCTCTGGTGCTGTACAGAAGGCATTAAACTAATGTAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | GGTCTTTGTTGTACCTTTATTAGGCTAAATTCCACTAGAGAAAGGCCCATCTATCCTGTGGCTGTGCCCTaGCTGGCGTCCAATGAATGT | + |
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Preference number: 4 (lower is better) Translates to: GLCCTFIRLNSTRERPIYPVAVP*LASNEC Trigger: ACATTCATTGGACGCCAGCCAGGGCACAGCCACAGG...ATAGATGGGCCTTTCTCTAGTGGAATTTAGCCTAATAAAGGTACAACAAAGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CCA 90 bp | GCTTTCGCCTTAAATAAATACGCACTTCATCTACTCCATACTGAACACCCAATCTCGGTTGCCCAGGAATaGATACTGGTGGGGTCATTG | + |
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Preference number: 4 (lower is better) Translates to: AFALNKYALHLLHTEHPISVAQE*ILVGSL Trigger: CAATGACCCCACCAGTATCCATTCCTGGGCAACCGA...GATTGGGTGTTCAGTATGGAGTAGATGAAGTGCGTATTTATTTAAGGCGAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTGCCAAGATACAGGCCTaGGGCGGGTTAATCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFAKIQA*GGLITA Trigger: TGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGC...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | TTCTCCATTGGAAGCCCTGTGCTCCATCCAATAGATGAGCATCCACTTCTGTATCTATCTTGGCTAAGATaGCATCATCGTTTGCATCTA | + |
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Preference number: 4 (lower is better) Translates to: FSIGSPVLHPIDEHPLLYLSWLR*HHRLHL Trigger: TAGATGCAAACGATGATGGCATCTTAGCCAAGATAG...ATACAGAAGTGGATGCTCATCTATTGGATGGAGCACAGGGCTTCCAATGGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CCA 90 bp | TATAAGGTCAGGTCTCTGAACAAACGACTCTTTAGTTTTTCTTCCTCTGTCTTCTGGCTGTGCCCTGGCTaGCGTCCAATGAATGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: YKVRSLNKRLFSFSSSVFWLCPG*RPMNVF Trigger: AAAAACATTCATTGGACGCCAGCCAGGGCACAGCCA...GAAGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | TTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGATTCACAATGTTCCCTTaGTCCATCGTAGGAGACAGT | + |
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Preference number: 4 (lower is better) Translates to: LLVRLSSHISTVHVQGRGFTMFP*SIVGDS Trigger: ACTGTCTCCTACGATGGAGCAAGGGAACATTGTGAA...TCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | GGTCTTTGTTGTACCTTTATTAGGCTAAATTCCACTAGAGAAAGGCCCATCTATCTGGCTGGCGTCCAATaGATGTTTTTCCAGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: GLCCTFIRLNSTRERPIYLAGVQ*MFFQNV Trigger: AACATTCTGGAAAAACATTCATTGGACGCCAGCCAG...ATAGATGGGCCTTTCTCTAGTGGAATTTAGCCTAATAAAGGTACAACAAAGACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR GCA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTGTTTTTCCAGAATGTTaGGGGCAGCTGGACTTAAGC | + |
|
Preference number: 4 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFVFPEC*GQLDLS Trigger: GCTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAAC...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | TTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGAAGACAGCTCAGAAGAGTAACAGCTGCTaGTCTGATGATAAAGTCATT | + |
|
Preference number: 4 (lower is better) Translates to: FVITHFYSTCTGERKTAQKSNSC*SDDKVI Trigger: AATGACTTTATCATCAGAGCAGCAGCTGTTACTCTT...CTGAGCTGTCTTCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR TCA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTCTGGCTGGCGTCCAATaGATGTTTTTCCAGAATGTT | + |
|
Preference number: 4 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFLAGVQ*MFFQNV Trigger: AACATTCTGGAAAAACATTCATTGGACGCCAGCCAG...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | TATAAGGTCAGGTCTCTGAACAAACGACTCTTTAGTTTTTCTTCCTCTGTCTTCCTATCTTGGCTAAGATaGCATCATCGTTTGCATCTA | + |
|
Preference number: 4 (lower is better) Translates to: YKVRSLNKRLFSFSSSVFLSWLR*HHRLHL Trigger: TAGATGCAAACGATGATGGCATCTTAGCCAAGATAG...GAAGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR GCA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTAATGCCCTTAGCGGCTaGATCTTTTATGATTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFNALSG*IFYDWC Trigger: ACACCAATCATAAAAGATGCAGCCGCTAAGGGCATT...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CCA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATCTAAAAGATCCTCCTTaGTACTCCTCTGGCATCAAT | + |
|
Preference number: 4 (lower is better) Translates to: PTKCSLLVRLSSHISTVHLKDPP*YSSGIN Trigger: ATTGATGCCAGAGGAGTACCAAGGAGGATCTTTTAG...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS GCA 90 bp | ATGTTGCGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCCCTTTGTaGTCCTTCCTGGCGGGACAAGGAATCTGCGGCTGTGGAGAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: MLRAAGLKRNRAVPL*SFLAGQGICGCGEG Trigger: GCCCTCTCCACAGCCGCAGATTCCTTGTCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 90 bp | CACCTCCAACTTGCTCCACGGTCGACAGGCCAAGCAGCAGCACCCTaGGCCAGTCCCAGGCTTCGACGGCTGCTAAATCCCAGAAGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: HLQLAPRSTGQAAAP*ASPRLRRLLNPRRY Trigger: GTACCTTCTGGGATTTAGCAGCCGTCGAAGCCTGGGACTGGCTCAGGGTGCTGCTGCTTGGCCTGTCGACCGTGGAGCAAGTTGGAGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 |
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| CDS CCA 90 bp | ACCCGCTGCATTCGGTTGCCCAGGAATGGATACTGGTGGGGTCATTaGCCGAGGATAGGATGGCCCGGCTGTAGCCTGAGGAGGCACAGA | + |
|
Preference number: 5 (lower is better) Translates to: TRCIRLPRNGYWWGH*PRIGWPGCSLRRHR Trigger: TCTGTGCCTCCTCAGGCTACAGCCGGGCCATCCTATCCTCGGCCAATGACCCCACCAGTATCCATTCCTGGGCAACCGAATGCAGCGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CCA 90 bp | TTCGGTGAATGTACCCGCTGCATTCGGTTGCCCAGGAATGGATACTaGTGGGGTCATTGGCCGAGGATAGGATGGCCCGGCTGTAGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: FGECTRCIRLPRNGY*WGHWPRIGWPGCSL Trigger: CAGGCTACAGCCGGGCCATCCTATCCTCGGCCAATGACCCCACCAGTATCCATTCCTGGGCAACCGAATGCAGCGGGTACATTCACCGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS-3UTR CAA 90 bp | TTTCCAGTAAAACACTCTCCCTGCCTCTGTGAGACAGGGCCTCACCGCGTAGCCCTGGTGCTGCTGCAGTaGAGGGTTCCCCTCTTCATC | + |
|
Preference number: 5 (lower is better) Translates to: FPVKHSPCLCETGPHRVALVLLQ*RVPLFI Trigger: GATGAAGAGGGGAACCCTCAACTGCAGCAGCACCAG...GGCTACGCGGTGAGGCCCTGTCTCACAGAGGCAGGGAGAGTGTTTTACTGGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 90 bp | AGCTTCAGCACGGGGCGGAATCTCCCAACGGCCAAGATACAGGCCTaGGGCGGGTTAATCACTGCAGCGAACTCATCGATGCCAAACATC | + |
|
Preference number: 5 (lower is better) Translates to: SFSTGRNLPTAKIQA*GGLITAANSSMPNI Trigger: GATGTTTGGCATCGATGAGTTCGCTGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGCCGTTGGGAGATTCCGCCCCGTGCTGAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS GCA 90 bp | TGGCTGTGCCCTGGCTGGCGTCCAATGAATGTTTTTCCAGAATGTTaGGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCCCTTTGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: WLCPGWRPMNVFPEC*GQLDLSGTVPSLCA Trigger: AGCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 90 bp | AGGAATCTGCGGCTGTGGAGAGGGCTGAGTAGGAGCTGGTGGTTTTaGGACTGGAGGTGGAGCACTGACATCCTTGGGAATTTCCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: RNLRLWRGLSRSWWF*DWRWSTDILGNFHL Trigger: CAGGTGGAAATTCCCAAGGATGTCAGTGCTCCACCTCCAGTCTCAAAACCACCAGCTCCTACTCAGCCCTCTCCACAGCCGCAGATTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CCA 90 bp | GCATCTTCTTTAGTGAAGATCCCGCGAGGGCCTGTGGCTGTGCCCTaGCTGGCGTCCAATGAATGTTTTTCCAGAATGTTGCGGGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: ASSLVKIPRGPVAVP*LASNECFSRMLRAA Trigger: AGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTCGCGGGATCTTCACTAAAGAAGATGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CCA 90 bp | ACATACTCTTTAGTGAAGATCCCGCGAGGGCCTGTGGCTGTGCCCTaGCTGGCGTCCAATGAATGTTTTTCCAGAATGTTGCGGGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: TYSLVKIPRGPVAVP*LASNECFSRMLRAA Trigger: AGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTCGCGGGATCTTCACTAAAGAGTATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CAA 90 bp | GCCCTGGCATTCCCCTGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCAAGGTGACCACAGCCTaGTCCGTCTCAATTTCACAT | + |
|
Preference number: 5 (lower is better) Translates to: ALAFPCVGAYNLRKSKGLKVTTA*SVSISH Trigger: ATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTT...GAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CAA 90 bp | GCCCTGGCATTCCCCTGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTGTTTTTCCAGAATGTaGCGGGCAGCTGGACTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: ALAFPCVGAYNLRKSKGLCFSRM*RAAGLK Trigger: CTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACA...GAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACAGGGGAATGCCAGGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS GCA 90 bp | CCTTTATCTGTTGCCACAGCCACTGAAATGTCAACAGAGGGCAGCTaGTTTGGGCCTTCTCCATCCCAGGTGACATTAACCCCAGGCATT | + |
|
Preference number: 5 (lower is better) Translates to: PLSVATATEMSTEGS*FGPSPSQVTLTPGI Trigger: AATGCCTGGGGTTAATGTCACCTGGGATGGAGAAGGCCCAAAGCAGCTGCCCTCTGTTGACATTTCAGTGGCTGTGGCAACAGATAAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS GCA 90 bp | GAATCTCCCAACGGCCAAGATACAGGCCTGAGGCGGGTTAATCACTaGAGCGAACTCATCGATGCCAAACATCCCCAAGTTGGAAATACT | + |
|
Preference number: 5 (lower is better) Translates to: ESPNGQDTGLRRVNH*SELIDAKHPQVGNT Trigger: AGTATTTCCAACTTGGGGATGTTTGGCATCGATGAGTTCGCTGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGCCGTTGGGAGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | AGCCACTCTAGTCATTTAACCACACTTAGAGTCACACATTGCTATGAGGATCTCAACCGTGCCGTCCCTTaGTGCTCCTTCCTGGCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: SHSSHLTTLRVTHCYEDLNRAVP*CSFLAG Trigger: TCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTT...GAGATCCTCATAGCAATGTGTGACTCTAAGTGTGGTTAAATGACTAGAGTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CAA 90 bp | TGTGTTGGGGCATATAATCTTCGCAAGTCCAAGGGCCTCTCCTCAAAGGATGGCTTTCACAATGTTCCCTaGCTCCATCGTAGGAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: CVGAYNLRKSKGLSSKDGFHNVP*LHRRRQ Trigger: CTGTCTCCTACGATGGAGCAAGGGAACATTGTGAAA...GCCATCCTTTGAGGAGAGGCCCTTGGACTTGCGAAGATTATATGCCCCAACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111183.2 |
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| CDS-3UTR CAA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTATGTTTTTCCAGAATGTaGCGGGCAGCTGGACTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: QLASKRASFLNLSQRLRLCFSRM*RAAGLK Trigger: CTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACA...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | TATAAGGTCAGGTCTCTGAACAAACGACTCTTTAGTTTTTCTTCCTCTGTCTTCAACCGTGCCGTCCCTTaGTGCTCCTTCCTGGCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: YKVRSLNKRLFSFSSSVFNRAVP*CSFLAG Trigger: TCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTT...GAAGACAGAGGAAGAAAAACTAAAGAGTCGTTTGTTCAGAGACCTGACCTTATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 90 bp | CAACCACTATCTTGGCTAAGATGCCATCATCGTTTGCATCTAAGGTaGCCACAGCCTTGTCCGTCTCAATTTCACATAACGAGTCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: QPLSWLRCHHRLHLR*PQPCPSQFHITSLQ Trigger: CTGGAGACTCGTTATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTTAGATGCAAACGATGATGGCATCTTAGCCAAGATAGTGGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS-3UTR CAA 90 bp | CAGCTAGCCTCAAAGCGGGCCTCCTTTCTCAATCTCTCTCAAAGGCTGAGGTTAATAACTCTTCGAATATaGCTAGCAGGAATTTCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: QLASKRASFLNLSQRLRLITLRI*LAGISV Trigger: CACCGAAATTCCTGCTAGCAATATTCGAAGAGTTAT...TAACCTCAGCCTTTGAGAGAGATTGAGAAAGGAGGCCCGCTTTGAGGCTAGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CCA 90 bp | CATCCCCAAGTTGGAAATACTAAAAGATCCTCCTTGGTACTCCTCTaGCATCAATTTCCCATCCCGTGCTTTCTTCGACAGAACCTTTAC | + |
|
Preference number: 5 (lower is better) Translates to: HPQVGNTKRSSLVLL*HQFPIPCFLRQNLY Trigger: GTAAAGGTTCTGTCGAAGAAAGCACGGGATGGGAAATTGATGCCAGAGGAGTACCAAGGAGGATCTTTTAGTATTTCCAACTTGGGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | TTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGAAGACAGCTCAGAAGGTGACCACAGCCTaGTCCGTCTCAATTTCACAT | + |
|
Preference number: 5 (lower is better) Translates to: FVITHFYSTCTGERKTAQKVTTA*SVSISH Trigger: ATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTT...CTGAGCTGTCTTCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 90 bp | TCCCGTGCTTTCTTCGACAGAACCTTTACAGAGTCAGCGATCTCCTaGATGCCCTTAGCGGCTGCATCTTTTATGATTGGTGTAATTAAA | + |
|
Preference number: 5 (lower is better) Translates to: SRAFFDRTFTESAIS*MPLAAASFMIGVIK Trigger: TTTAATTACACCAATCATAAAAGATGCAGCCGCTAAGGGCATTCAGGAGATCGCTGACTCTGTAAAGGTTCTGTCGAAGAAAGCACGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATATACTGGTGGGGTCATaGGCCGAGGATAGGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PTKCSLLVRLSSHISTVHILVGS*AEDRMA Trigger: GGCCATCCTATCCTCGGCCAATGACCCCACCAGTAT...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | GTTTACATTAGTTTAATGCCTTCTGTACAGCACCAGAGGTTAAAAGTGGATCTGGGAGCACTGACATCCTaGGGAATTTCCACCTGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: VYISLMPSVQHQRLKVDLGALTS*GISTCF Trigger: GAAACAGGTGGAAATTCCCAAGGATGTCAGTGCTCC...CAGATCCACTTTTAACCTCTGGTGCTGTACAGAAGGCATTAAACTAATGTAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 90 bp | CACCTGTTTCCAATCTTCCCCTTCTTCAACCATCAAAGCAATGAGTaGACCCAGCTGTATATTTTTAGCACCTTCCTCAACCACTATCTT | + |
|
Preference number: 5 (lower is better) Translates to: HLFPIFPFFNHQSNE*TQLYIFSTFLNHYL Trigger: AAGATAGTGGTTGAGGAAGGTGCTAAAAATATACAGCTGGGTTCACTCATTGCTTTGATGGTTGAAGAAGGGGAAGATTGGAAACAGGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS-3UTR CAA 90 bp | GTTTACATTAGTTTAATGCCTTCTGTACAGCACCAGAGGTTAAAAGTGGATCTGCTGGATTCAGTAATCTaGCCCATCTGTTTCAGCTCG | + |
|
Preference number: 5 (lower is better) Translates to: VYISLMPSVQHQRLKVDLLDSVI*PICFSS Trigger: CGAGCTGAAACAGATGGGCAAGATTACTGAATCCAG...CAGATCCACTTTTAACCTCTGGTGCTGTACAGAAGGCATTAAACTAATGTAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATTTTCACAATGTTCCCTaGCTCCATCGTAGGAGACAG | + |
|
Preference number: 5 (lower is better) Translates to: PTKCSLLVRLSSHISTVHFHNVP*LHRRRQ Trigger: CTGTCTCCTACGATGGAGCAAGGGAACATTGTGAAA...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATACTAAAAGATCCTCCTaGGTACTCCTCTGGCATCAA | + |
|
Preference number: 5 (lower is better) Translates to: PTKCSLLVRLSSHISTVHTKRSS*VLLWHQ Trigger: TTGATGCCAGAGGAGTACCAAGGAGGATCTTTTAGT...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | TTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATGTACAGGGGAGAGGATTCTCTAGGTTTGCTTaGAAAGTTTCAAGAAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: LLVRLSSHISTVHVQGRGFSRFA*KVSRNL Trigger: CAGGTTTCTTGAAACTTTCAAAGCAAACCTAGAGAA...TCCTCTCCCCTGTACATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTACTTTAATGTCATCTTaGACCAGATCTCGTCTAACC | + |
|
Preference number: 5 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFTLMSS*TRSRLT Trigger: GGTTAGACGAGATCTGGTCAAAGATGACATTAAAGT...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CACAGTGTCAAAGTTAAAAGACTGGAAATATATCTAGCTAAGACACCTGGCTTTCCAAACATCCCCAAGTaGGAAATACTAAAAGATCCT | + |
|
Preference number: 5 (lower is better) Translates to: HSVKVKRLEIYLAKTPGFPNIPK*EILKDP Trigger: AGGATCTTTTAGTATTTCCAACTTGGGGATGTTTGG...AAAGCCAGGTGTCTTAGCTAGATATATTTCCAGTCTTTTAACTTTGACACTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS-3UTR CAA 90 bp | CCAACCAAATGTTCTTTATTAGTCCGTTTGTCATCACACATTTCTACAGTACATTTAAACCTTTATCTGTaGCCACAGCCACTGAAATGT | + |
|
Preference number: 5 (lower is better) Translates to: PTKCSLLVRLSSHISTVHLNLYL*PQPLKC Trigger: ACATTTCAGTGGCTGTGGCAACAGATAAAGGTTTAA...ATGTACTGTAGAAATGTGTGATGACAAACGGACTAATAAAGAACATTTGGTTGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 72 bp | CTTGCTCCACGGTCGACAGGCCAAGCAGCAGCACCCTaGGCCAGTCCCAGGCTTCGACGGCTGCTAAATCCC | + |
|
Preference number: 6 (lower is better) Translates to: LAPRSTGQAAAP*ASPRLRRLLNP Trigger: GGGATTTAGCAGCCGTCGAAGCCTGGGACTGGCTCAGGGTGCTGCTGCTTGGCCTGTCGACCGTGGAGCAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 |
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| CDS CAA 72 bp | CGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCCCTTaGTGCTCCTTCCTGGCGGGACAAGGAATCTGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: RAAGLKRNRAVP*CSFLAGQGICG Trigger: GCCGCAGATTCCTTGTCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CCA 72 bp | TGTACCCGCTGCATTCGGTTGCCCAGGAATGGATACTaGTGGGGTCATTGGCCGAGGATAGGATGGCCCGGC | + |
|
Preference number: 6 (lower is better) Translates to: CTRCIRLPRNGY*WGHWPRIGWPG Trigger: GCCGGGCCATCCTATCCTCGGCCAATGACCCCACCAGTATCCATTCCTGGGCAACCGAATGCAGCGGGTACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CAA 90 bp | AGAATGTTGCGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCCCTTaGTGCTCCTTCCTGGCGGGACAAGGAATCTGCGGCTGTGGAGAG | + |
|
Preference number: 6 (lower is better) Translates to: RMLRAAGLKRNRAVP*CSFLAGQGICGCGE Trigger: CTCTCCACAGCCGCAGATTCCTTGTCCCGCCAGGAAGGAGCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACATTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 72 bp | GCGAGGGCCTGTGGCTGTGCCCTGGCTGGCGTCCAATaGATGTTTTTCCAGAATGTTGCGGGCAGCTGGACT | + |
|
Preference number: 6 (lower is better) Translates to: ARACGCALAGVQ*MFFQNVAGSWT Trigger: AGTCCAGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CCA 72 bp | ATTCGGTTGCCCAGGAATGGATACTGGTGGGGTCATTaGCCGAGGATAGGATGGCCCGGCTGTAGCCTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: IRLPRNGYWWGH*PRIGWPGCSLR Trigger: CCTCAGGCTACAGCCGGGCCATCCTATCCTCGGCCAATGACCCCACCAGTATCCATTCCTGGGCAACCGAAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CAA 90 bp | GTGGCTGTGCCCTGGCTGGCGTCCAATGAATGTTTTTCCAGAATGTaGCGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCCCTTTGTGC | + |
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Preference number: 6 (lower is better) Translates to: VAVPWLASNECFSRM*RAAGLKRNRAVPLC Trigger: GCACAAAGGGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 72 bp | ACGGGGCGGAATCTCCCAACGGCCAAGATACAGGCCTaGGGCGGGTTAATCACTGCAGCGAACTCATCGATG | + |
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Preference number: 6 (lower is better) Translates to: TGRNLPTAKIQA*GGLITAANSSM Trigger: CATCGATGAGTTCGCTGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGCCGTTGGGAGATTCCGCCCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS TCA 72 bp | CGGCTGTGGAGAGGGCTGAGTAGGAGCTGGTGGTTTTaGGACTGGAGGTGGAGCACTGACATCCTTGGGAAT | + |
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Preference number: 6 (lower is better) Translates to: RLWRGLSRSWWF*DWRWSTDILGN Trigger: ATTCCCAAGGATGTCAGTGCTCCACCTCCAGTCTCAAAACCACCAGCTCCTACTCAGCCCTCTCCACAGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS GCA 72 bp | CCTGGCTGGCGTCCAATGAATGTTTTTCCAGAATGTTaGGGGCAGCTGGACTTAAGCGGAACCGTGCCGTCC | + |
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Preference number: 6 (lower is better) Translates to: PGWRPMNVFPEC*GQLDLSGTVPS Trigger: GGACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CAA 72 bp | CCCTGGCTGGCGTCCAATGAATGTTTTTCCAGAATGTaGCGGGCAGCTGGACTTAAGCGGAACCGTGCCGTC | + |
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Preference number: 6 (lower is better) Translates to: PWLASNECFSRM*RAAGLKRNRAV Trigger: GACGGCACGGTTCCGCTTAAGTCCAGCTGCCCGCAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 72 bp | GACATTGTGACCGTTATAAGCTGGTGCTGCTGCAGTTaGGGGTTCCCCTCTTCATCCTCCGTCAGCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: DIVTVISWCCCS*GFPSSSSVSFS Trigger: GCTGAAGCTGACGGAGGATGAAGAGGGGAACCCTCAACTGCAGCAGCACCAGCTTATAACGGTCACAATGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS GCA 72 bp | GTTGCCACAGCCACTGAAATGTCAACAGAGGGCAGCTaGTTTGGGCCTTCTCCATCCCAGGTGACATTAACC | + |
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Preference number: 6 (lower is better) Translates to: VATATEMSTEGS*FGPSPSQVTLT Trigger: GGTTAATGTCACCTGGGATGGAGAAGGCCCAAAGCAGCTGCCCTCTGTTGACATTTCAGTGGCTGTGGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CCA 72 bp | TTAGTGAAGATCCCGCGAGGGCCTGTGGCTGTGCCCTaGCTGGCGTCCAATGAATGTTTTTCCAGAATGTTG | + |
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Preference number: 6 (lower is better) Translates to: LVKIPRGPVAVP*LASNECFSRML Trigger: CAACATTCTGGAAAAACATTCATTGGACGCCAGCCAGGGCACAGCCACAGGCCCTCGCGGGATCTTCACTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS GCA 72 bp | AACGGCCAAGATACAGGCCTGAGGCGGGTTAATCACTaGAGCGAACTCATCGATGCCAAACATCCCCAAGTT | + |
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Preference number: 6 (lower is better) Translates to: NGQDTGLRRVNH*SELIDAKHPQV Trigger: AACTTGGGGATGTTTGGCATCGATGAGTTCGCTGCAGTGATTAACCCGCCTCAGGCCTGTATCTTGGCCGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CAA 72 bp | GGTGGAGGAGCTGAGGCTGGTCTGGATTCAGTAATCTaGCCCATCTGTTTCAGCTCGACTAACTTGAGTGCA | + |
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Preference number: 6 (lower is better) Translates to: GGGAEAGLDSVI*PICFSSTNLSA Trigger: TGCACTCAAGTTAGTCGAGCTGAAACAGATGGGCAAGATTACTGAATCCAGACCAGCCTCAGCTCCTCCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS GCA 72 bp | AATATTGCTAGCAGGAATTTCGGTGAATGTACCCGCTaGATTCGGTTGCCCAGGAATGGATACTGGTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: NIASRNFGECTR*IRLPRNGYWWG Trigger: ACCCCACCAGTATCCATTCCTGGGCAACCGAATGCAGCGGGTACATTCACCGAAATTCCTGCTAGCAATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CAA 90 bp | GAGAGAGAGGGTGGAGGAGCTGAGGCTGGTCTGGATTCAGTAATCTaGCCCATCTGTTTCAGCTCGACTAACTTGAGTGCATCTTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: EREGGGAEAGLDSVI*PICFSSTNLSASSL Trigger: TAAAGAAGATGCACTCAAGTTAGTCGAGCTGAAACAGATGGGCAAGATTACTGAATCCAGACCAGCCTCAGCTCCTCCACCCTCTCTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS CAA 90 bp | TTGGCTAAGATGCCATCATCGTTTGCATCTAAGGTGACCACAGCCTaGTCCGTCTCAATTTCACATAACGAGTCTCCAGCACTCACAGCT | + |
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Preference number: 6 (lower is better) Translates to: LAKMPSSFASKVTTA*SVSISHNESPALTA Trigger: AGCTGTGAGTGCTGGAGACTCGTTATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTTAGATGCAAACGATGATGGCATCTTAGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CAA 72 bp | ATGCCATCATCGTTTGCATCTAAGGTGACCACAGCCTaGTCCGTCTCAATTTCACATAACGAGTCTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: MPSSFASKVTTA*SVSISHNESPA Trigger: TGCTGGAGACTCGTTATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTTAGATGCAAACGATGATGGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS CAA 72 bp | TCAGTAATCTTGCCCATCTGTTTCAGCTCGACTAACTaGAGTGCATCTTCTTTAGTGAAGATCCCGCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: SVILPICFSSTN*SASSLVKIPRG Trigger: CCCTCGCGGGATCTTCACTAAAGAAGATGCACTCAAGTTAGTCGAGCTGAAACAGATGGGCAAGATTACTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011058.9 ENSMUST00000132449.8 |
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| CDS TCA 72 bp | TCTTGGCTAAGATGCCATCATCGTTTGCATCTAAGGTaGCCACAGCCTTGTCCGTCTCAATTTCACATAACG | + |
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Preference number: 6 (lower is better) Translates to: SWLRCHHRLHLR*PQPCPSQFHIT Trigger: CGTTATGTGAAATTGAGACGGACAAGGCTGTGGTCACCTTAGATGCAAACGATGATGGCATCTTAGCCAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000011058.9 ENSMUST00000111183.2 ENSMUST00000132449.8 |
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| CDS TCA 72 bp | TTCTTCGACAGAACCTTTACAGAGTCAGCGATCTCCTaGATGCCCTTAGCGGCTGCATCTTTTATGATTGGT | + |
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Preference number: 6 (lower is better) Translates to: FFDRTFTESAIS*MPLAAASFMIG Trigger: ACCAATCATAAAAGATGCAGCCGCTAAGGGCATTCAGGAGATCGCTGACTCTGTAAAGGTTCTGTCGAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CCA 72 bp | GTTGGAAATACTAAAAGATCCTCCTTGGTACTCCTCTaGCATCAATTTCCCATCCCGTGCTTTCTTCGACAG | + |
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Preference number: 6 (lower is better) Translates to: VGNTKRSSLVLL*HQFPIPCFLRQ Trigger: CTGTCGAAGAAAGCACGGGATGGGAAATTGATGCCAGAGGAGTACCAAGGAGGATCTTTTAGTATTTCCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CAA 72 bp | ACTGCAGCGAACTCATCGATGCCAAACATCCCCAAGTaGGAAATACTAAAAGATCCTCCTTGGTACTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: TAANSSMPNIPK*EILKDPPWYSS Trigger: AGAGGAGTACCAAGGAGGATCTTTTAGTATTTCCAACTTGGGGATGTTTGGCATCGATGAGTTCGCTGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CAA 72 bp | GATTCAGTTAACCTCTTAGCGATAACTCTTCGAATATaGCTAGCAGGAATTTCGGTGAATGTACCCGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: DSVNLLAITLRI*LAGISVNVPAA Trigger: TGCAGCGGGTACATTCACCGAAATTCCTGCTAGCAATATTCGAAGAGTTATCGCTAAGAGGTTAACTGAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CAA 90 bp | GTACTTTTTGATTCAGTTAACCTCTTAGCGATAACTCTTCGAATATaGCTAGCAGGAATTTCGGTGAATGTACCCGCTGCATTCGGTTGC | + |
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Preference number: 6 (lower is better) Translates to: VLFDSVNLLAITLRI*LAGISVNVPAAFGC Trigger: GCAACCGAATGCAGCGGGTACATTCACCGAAATTCCTGCTAGCAATATTCGAAGAGTTATCGCTAAGAGGTTAACTGAATCAAAAAGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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| CDS CAA 72 bp | ATGATAAAGTCATTTACTGAGACTTTAATGTCATCTTaGACCAGATCTCGTCTAACCTTTAGAACTGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: MIKSFTETLMSS*TRSRLTFRTAP Trigger: TGGCGCAGTTCTAAAGGTTAGACGAGATCTGGTCAAAGATGACATTAAAGTCTCAGTAAATGACTTTATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011058.9 |
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