Pregenerated sensors for PDHB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021748Ensembl transcript IDs: ENSMUST00000022268.10
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAAATGTAGATAATATACTTCTTAGACATATAAGTTACCTTCTGTaGGGGCATTCTTATCTTGCCCCTTCCAGTGAAAGAGGGCAAATT | + |
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Preference number: 1 (lower is better) Translates to: ANVDNILLRHISYLL*GHSYLAPSSERGQI Trigger: AATTTGCCCTCTTTCACTGGAAGGGGCAAGATAAGAATGCCCCCACAGAAGGTAACTTATATGTCTAAGAAGTATATTATCTACATTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| 3UTR-3UTR CAA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAACCACTCATAAGCACATaGAAACTTCTTACAGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQPLIST*KLLTVQ Trigger: CTGAACTGTAAGAAGTTTCAATGTGCTTATGAGTGG...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAAGCAGCTACACCTGCTaGGGCGCCATTGGGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQSSYTC*GAIGPP Trigger: AGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCT...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTCGCCATTGGGCCCCCTaGATACTATGGGCACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSRHWAP*ILWAQA Trigger: AGCCTGTGCCCATAGTATTCAGGGGGCCCAATGGCG...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAAAGCATTGCGAGTGCTaGGCAGCTACACCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQKHCEC*AATPAE Trigger: CTCAGCAGGTGTAGCTGCTCAGCACTCGCAATGCTT...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAACGGAATTCCAGGGGCTaGCCACTTTTAAACCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQRNSRG*PLLNLG Trigger: GCCCAGGTTTAAAAGTGGTCAGCCCCTGGAATTCCG...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTGCAGTGCCCATACCATaGAGCAAAGCATTGCGAGTG | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSAVPIP*SKALRV Trigger: CACTCGCAATGCTTTGCTGCATGGTATGGGCACTGC...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTTATGCACCGTCATACTaGGCAACTTCTTCCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSYAPSY*ATSSPS Trigger: GCTTGGGGAAGAAGTTGCCCAGTATGACGGTGCATA...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAATCTGCTAACCTTGTATaGACCGTCATACTGGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQSANLV*TVILGN Trigger: GTTGCCCAGTATGACGGTGCATACAAGGTTAGCAGA...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAATTTAAACCTGGGCAGTaGCCATACCATGCAGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQFKPGQ*PYHAAK Trigger: CTTTGCTGCATGGTATGGGCACTGCCCAGGTTTAAA...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTTCCTACTCCAAATTGTaGCCAGCCTCCTTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSSYSKL*PASFHS Trigger: ACTGTGGAAGGAGGCTGGCCACAATTTGGAGTAGGA...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTTCACACTGGCTTCTATaGCTTCGATGTCCATTGGTC | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSSHWLL*LRCPLV Trigger: GACCAATGGACATCGAAGCCATAGAAGCCAGTGTGA...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAGTAAGTCTTGGCAGCTaGGTTTATAACCTGGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQVSLGS*VYNLVN Trigger: ATTGACCAGGTTATAAACTCAGCTGCCAAGACTTAC...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAAATCAGGAAATCTTTTaGCTGAGCTTCTGCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQNQEIF*LSFCRK Trigger: CTTCCTGCAGAAGCTCAGTCAAAAGATTTCCTGATT...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTCGATGTCCATTGGTCTaGTGGTGCGCAGATTTATTA | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSRCPLV*WCADLL Trigger: TAATAAATCTGCGCACCATCAGACCAATGGACATCG...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTTCCACAGTCACGAGATaGTTTGTCTTCATCACACTG | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSSTVTR*FVFITL Trigger: CAGTGTGATGAAGACAAATCATCTCGTGACTGTGGA...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTATGATGTCTTTGACCTaGGGTACGGAGTTGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSMMSLT*GTELSS Trigger: AGAAGACAACTCCGTACCTCAGGTCAAAGACATCAT...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAGTGATGTGGGTCCCTTaGCTTTCAATTTTGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQVMWVP*LSILAF Trigger: AAAAGCCAAAATTGAAAGGCAAGGGACCCACATCAC...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTGCAACTACAGTGATGTaGGTCCCTTGCCTTTCAATT | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSATTVM*VPCLSI Trigger: AATTGAAAGGCAAGGGACCCACATCACTGTAGTTGC...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTTTGTCTTCATCACACTaGCTTCTATGGCTTCGATGT | + |
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Preference number: 4 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSLSSSH*LLWLRC Trigger: ACATCGAAGCCATAGAAGCCAGTGTGATGAAGACAA...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAACCTGGTCAATAGCTTaGATAGAGAAATTGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQTWSIA*IEKLKV Trigger: GACCTTCAATTTCTCTATGCAAGCTATTGACCAGGT...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAATTTAATAAGTCCTTTTaGATCCTCGGAATTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQFNKSF*ILGIPG Trigger: CCCTGGAATTCCGAGGATGCAAAAGGACTTATTAAA...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR TCA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAATCTTCATCCATACCTTaGTTAATAGCTTCACGAACT | + |
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Preference number: 4 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQSSSIP*LIASRT Trigger: AGTTCGTGAAGCTATTAATCAAGGTATGGATGAAGA...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CCA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTGCTGAGTTTATAACCTaGTCAATAGCTTGCATAGAG | + |
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Preference number: 4 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSAEFIT*SIACIE Trigger: CTCTATGCAAGCTATTGACCAGGTTATAAACTCAGC...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR GCA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTCAGAGTCTTCTTTACTaGAAATATGATGTCTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSQSLLY*KYDVFD Trigger: GTCAAAGACATCATATTTGCAGTAAAGAAGACTCTG...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | ATAGCTTCACGAACTGTCAACTGCACCGCTGCGGGCGCCGAGCGGTaGAAACGCCTCTTCAGCAGCCCGGAAGCCTGCCGCAAGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: IASRTVNCTAAGAER*KRLFSSPEACRKGP Trigger: GGGACCCTTGCGGCAGGCTTCCGGGCTGCTGAAGAGGCGTTTTCACCGCTCGGCGCCCGCAGCGGTGCAGTTGACAGTTCGTGAAGCTAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | GCGAGTGCTGAGCAGCTACACCTGCTGAGGCGCCATTGGGCCCCCTaGATACTATGGGCACAGGCTGAAGGCCAGCGGACATATAGTAAG | + |
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Preference number: 5 (lower is better) Translates to: ASAEQLHLLRRHWAP*ILWAQAEGQRTYSK Trigger: CTTACTATATGTCCGCTGGCCTTCAGCCTGTGCCCATAGTATTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTCAGCACTCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | AAACCTGGGCAGTGCCCATACCATGCAGCAAAGCATTGCGAGTGCTaGGCAGCTACACCTGCTGAGGCGCCATTGGGCCCCCTGAATACT | + |
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Preference number: 5 (lower is better) Translates to: KPGQCPYHAAKHCEC*AATPAEAPLGPLNT Trigger: AGTATTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTCAGCACTCGCAATGCTTTGCTGCATGGTATGGGCACTGCCCAGGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | ATACCATGCAGCAAAGCATTGCGAGTGCTGAGCAGCTACACCTGCTaGGGCGCCATTGGGCCCCCTGAATACTATGGGCACAGGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: IPCSKALRVLSSYTC*GAIGPPEYYGHRLK Trigger: CTTCAGCCTGTGCCCATAGTATTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTCAGCACTCGCAATGCTTTGCTGCATGGTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CCA 90 bp | GACAATACAGCTGCAGCTTCTAGGCAGTGGCCCACTGGTCTTGAATaGGCAACTACAGTGATGTGGGTCCCTTGCCTTTCAATTTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: DNTAAASRQWPTGLE*ATTVMWVPCLSILA Trigger: AGCCAAAATTGAAAGGCAAGGGACCCACATCACTGTAGTTGCCCATTCAAGACCAGTGGGCCACTGCCTAGAAGCTGCAGCTGTATTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CCA 90 bp | CATTCAATTCCCTCCTTAGACAATACAGCTGCAGCTTCTAGGCAGTaGCCCACTGGTCTTGAATGGGCAACTACAGTGATGTGGGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: HSIPSLDNTAAASRQ*PTGLEWATTVMWVP Trigger: AGGGACCCACATCACTGTAGTTGCCCATTCAAGACCAGTGGGCCACTGCCTAGAAGCTGCAGCTGTATTGTCTAAGGAGGGAATTGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | GCTCCTACTCCAAATTGTGGCCAGCCTCCTTCCACAGTCACGAGATaGTTTGTCTTCATCACACTGGCTTCTATGGCTTCGATGTCCATT | + |
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Preference number: 5 (lower is better) Translates to: APTPNCGQPPSTVTR*FVFITLASMASMSI Trigger: AATGGACATCGAAGCCATAGAAGCCAGTGTGATGAAGACAAATCATCTCGTGACTGTGGAAGGAGGCTGGCCACAATTTGGAGTAGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | GGGCACAGGCTGAAGGCCAGCGGACATATAGTAAGTCTTGGCAGCTaGGTTTATAACCTGGTCAATAGCTTGCATAGAGAAATTGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: GHRLKASGHIVSLGS*VYNLVNSLHREIEG Trigger: ACCTTCAATTTCTCTATGCAAGCTATTGACCAGGTTATAAACTCAGCTGCCAAGACTTACTATATGTCCGCTGGCCTTCAGCCTGTGCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTCCTGCTGAGGCGCCATaGGGCCCCCTGAATACTATG | + |
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Preference number: 5 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSPAEAP*GPLNTM Trigger: CATAGTATTCAGGGGGCCCAATGGCGCCTCAGCAGG...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 90 bp | AGCAGAAAAACTTTTTCATCTCTTTCTAGTTCTTCATCCATACCTTaGTTAATAGCTTCACGAACTGTCAACTGCACCGCTGCGGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: SRKTFSSLSSSSSIP*LIASRTVNCTAAGA Trigger: GGCGCCCGCAGCGGTGCAGTTGACAGTTCGTGAAGCTATTAATCAAGGTATGGATGAAGAACTAGAAAGAGATGAAAAAGTTTTTCTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTCCATGCAGCAAAGCATaGCGAGTGCTGAGCAGCTAC | + |
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Preference number: 5 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSPCSKA*RVLSSY Trigger: GTAGCTGCTCAGCACTCGCAATGCTTTGCTGCATGG...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CCA 90 bp | ATGATTTGTCTTCATCACACTGGCTTCTATGGCTTCGATGTCCATTaGTCTGATGGTGCGCAGATTTATTACCTCACATTCAATTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: MICLHHTGFYGFDVH*SDGAQIYYLTFNSL Trigger: GAGGGAATTGAATGTGAGGTAATAAATCTGCGCACCATCAGACCAATGGACATCGAAGCCATAGAAGCCAGTGTGATGAAGACAAATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | CCAGTGAAAGAGGGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTGTGTCGATGATCCTCTaGTCACCGTATTTCTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: PVKEGKFNLNSNRQSRVSVSMIL*SPYFFH Trigger: GTGGAAGAAATACGGTGACAAGAGGATCATCGACAC...AGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCCCTCTTTCACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | TTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGGACAAAGTGATGTGGGTCCCTaGCCTTTCAATTTTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: FNLNSNRQSRVSRVGSGQSDVGP*PFNFGF Trigger: AAAGCCAAAATTGAAAGGCAAGGGACCCACATCACT...TTGTCCACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTGAATCAGGAAATCTTTaGACTGAGCTTCTGCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSESGNL*TELLQE Trigger: TTCCTGCAGAAGCTCAGTCAAAAGATTTCCTGATTC...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTAACCTGGTCAATAGCTaGCATAGAGAAATTGAAGGT | + |
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Preference number: 5 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSNLVNS*HREIEG Trigger: ACCTTCAATTTCTCTATGCAAGCTATTGACCAGGTT...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS-3UTR CAA 90 bp | GGCAAATTTAACTTAAACAGTAACAGACAAAGCAGAGTATCTAGGGTAGGGAGTTTCTTCATCCATACCTaGATTAATAGCTTCACGAAC | + |
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Preference number: 5 (lower is better) Translates to: GKFNLNSNRQSRVSRVGSFFIHT*INSFTN Trigger: GTTCGTGAAGCTATTAATCAAGGTATGGATGAAGAA...ACTCCCTACCCTAGATACTCTGCTTTGTCTGTTACTGTTTAAGTTAAATTTGCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | GAGCAGCTACACCTGCTGAGGCGCCATTGGGCCCCCTaGATACTATGGGCACAGGCTGAAGGCCAGCGGACA | + |
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Preference number: 6 (lower is better) Translates to: EQLHLLRRHWAP*ILWAQAEGQRT Trigger: TGTCCGCTGGCCTTCAGCCTGTGCCCATAGTATTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | CAGTGCCCATACCATGCAGCAAAGCATTGCGAGTGCTaGGCAGCTACACCTGCTGAGGCGCCATTGGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: QCPYHAAKHCEC*AATPAEAPLGP Trigger: GGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTCAGCACTCGCAATGCTTTGCTGCATGGTATGGGCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | AGCAAAGCATTGCGAGTGCTGAGCAGCTACACCTGCTaGGGCGCCATTGGGCCCCCTGAATACTATGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: SKALRVLSSYTC*GAIGPPEYYGH Trigger: GTGCCCATAGTATTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCTCAGCACTCGCAATGCTTTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CCA 72 bp | GCTGCAGCTTCTAGGCAGTGGCCCACTGGTCTTGAATaGGCAACTACAGTGATGTGGGTCCCTTGCCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: AAASRQWPTGLE*ATTVMWVPCLS Trigger: TGAAAGGCAAGGGACCCACATCACTGTAGTTGCCCATTCAAGACCAGTGGGCCACTGCCTAGAAGCTGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CAA 90 bp | GGGACATCAGCACCAGTGACACGCACGGCAGGGGCATCAAGGAAGTaGAATGCAGGGCCTTCCATAATTCTGGCACAAATCTCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GTSAPVTRTAGASRK*NAGPSIILAQISAP Trigger: AGGAGCTGAGATTTGTGCCAGAATTATGGAAGGCCCTGCATTCAACTTCCTTGATGCCCCTGCCGTGCGTGTCACTGGTGCTGATGTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CAA 72 bp | GCACCAGTGACACGCACGGCAGGGGCATCAAGGAAGTaGAATGCAGGGCCTTCCATAATTCTGGCACAAATC | + |
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Preference number: 6 (lower is better) Translates to: APVTRTAGASRK*NAGPSIILAQI Trigger: GATTTGTGCCAGAATTATGGAAGGCCCTGCATTCAACTTCCTTGATGCCCCTGCCGTGCGTGTCACTGGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | GGCAGTGGCCCACTGGTCTTGAATGGGCAACTACAGTaGTGTGGGTCCCTTGCCTTTCAATTTTGGCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: GSGPLVLNGQLQ*CGSLAFQFWLF Trigger: GAAAAGCCAAAATTGAAAGGCAAGGGACCCACATCACTGTAGTTGCCCATTCAAGACCAGTGGGCCACTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | CCAAATTGTGGCCAGCCTCCTTCCACAGTCACGAGATaGTTTGTCTTCATCACACTGGCTTCTATGGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: PNCGQPPSTVTR*FVFITLASMAS Trigger: CGAAGCCATAGAAGCCAGTGTGATGAAGACAAATCATCTCGTGACTGTGGAAGGAGGCTGGCCACAATTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CAA 90 bp | CTACTCCAAATTGTGGCCAGCCTCCTTCCACAGTCACGAGATGATTaGTCTTCATCACACTGGCTTCTATGGCTTCGATGTCCATTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LLQIVASLLPQSRDD*SSSHWLLWLRCPLV Trigger: GACCAATGGACATCGAAGCCATAGAAGCCAGTGTGATGAAGACAAATCATCTCGTGACTGTGGAAGGAGGCTGGCCACAATTTGGAGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS CCA 72 bp | CTTCATCACACTGGCTTCTATGGCTTCGATGTCCATTaGTCTGATGGTGCGCAGATTTATTACCTCACATTC | + |
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Preference number: 6 (lower is better) Translates to: LHHTGFYGFDVH*SDGAQIYYLTF Trigger: GAATGTGAGGTAATAAATCTGCGCACCATCAGACCAATGGACATCGAAGCCATAGAAGCCAGTGTGATGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | CTGAAGGCCAGCGGACATATAGTAAGTCTTGGCAGCTaGGTTTATAACCTGGTCAATAGCTTGCATAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LKASGHIVSLGS*VYNLVNSLHRE Trigger: TTCTCTATGCAAGCTATTGACCAGGTTATAAACTCAGCTGCCAAGACTTACTATATGTCCGCTGGCCTTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | TCACACTGGCTTCTATGGCTTCGATGTCCATTGGTCTaGTGGTGCGCAGATTTATTACCTCACATTCAATTC | + |
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Preference number: 6 (lower is better) Translates to: SHWLLWLRCPLV*WCADLLPHIQF Trigger: GAATTGAATGTGAGGTAATAAATCTGCGCACCATCAGACCAATGGACATCGAAGCCATAGAAGCCAGTGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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| CDS TCA 72 bp | TTGGCTTTTCCAATAGGAATCAGGAAATCTTTTGACTaGGCTTCTGCAGGAAGTTCAAATGCAACTCCATAC | + |
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Preference number: 6 (lower is better) Translates to: LAFPIGIRKSFD*ASAGSSNATPY Trigger: GTATGGAGTTGCATTTGAACTTCCTGCAGAAGCTCAGTCAAAAGATTTCCTGATTCCTATTGGAAAAGCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022268.10 |
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