Pregenerated sensors for PDHA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031299Ensembl transcript IDs: ENSMUST00000033662.9
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGTCAGTGCCTCCACAATTCCTGGTGGCTGCTACACTTCTACCTCTaGTTTGCATTTCCCCAGCAGGCATTCACAGCTAGGACCACACCA | + |
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Preference number: 1 (lower is better) Translates to: GQCLHNSWWLLHFYL*FAFPQQAFTARTTP Trigger: TGGTGTGGTCCTAGCTGTGAATGCCTGCTGGGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 90 bp | GCCTTTGATCAGAGACATGATGGTCAGTGCCTCCACAATTCCTGGTaGCTGCTACACTTCTACCTCTGCTTTGCATTTCCCCAGCAGGCA | + |
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Preference number: 1 (lower is better) Translates to: AFDQRHDGQCLHNSW*LLHFYLCFAFPQQA Trigger: TGCCTGCTGGGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACCATCATGTCTCTGATCAAAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 90 bp | CTAGCCTTTGATCAGAGACATGATGGTCAGTGCCTCCACAATTCCTaGTGGCTGCTACACTTCTACCTCTGCTTTGCATTTCCCCAGCAG | + |
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Preference number: 1 (lower is better) Translates to: LAFDQRHDGQCLHNS*WLLHFYLCFAFPQQ Trigger: CTGCTGGGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACCATCATGTCTCTGATCAAAGGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR GCA 90 bp | TTGATCAGAGACATGATGGTCAGTGCCTCCACAATTCCTGGTGGCTaGTACACTTCTACCTCTGCTTTGCATTTCCCCAGCAGGCATTCA | + |
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Preference number: 1 (lower is better) Translates to: LIRDMMVSASTIPGG*YTSTSALHFPSRHS Trigger: TGAATGCCTGCTGGGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACCATCATGTCTCTGATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 90 bp | TTCTGCAAATTATTGTTTTGCAGGGGTGGTGTCCTCTGTAGGCTCTaGCATGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCA | + |
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Preference number: 1 (lower is better) Translates to: FCKLLFCRGGVLCRL*HAVSQHRRQMQESS Trigger: TGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCATGCCAGAGCCTACAGAGGACACCACCCCTGCAAAACAATAATTTGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 90 bp | CCTCCACCCCCTGATGGACTGGGAACCGACAGAGAGCTTATAGACTaGTTGCAACTACAAGGAGTGGATGCCAATACAATAGAAAAGGTA | + |
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Preference number: 1 (lower is better) Translates to: PPPPDGLGTDRELID*LQLQGVDANTIEKV Trigger: TACCTTTTCTATTGTATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATCAGGGGGTGGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR TCA 90 bp | CAAAATTGGAATCATTATAGGTGGTACAGAGAACCCTCCACCCCCTaGTGGACTGGGAACCGACAGAGAGCTTATAGACTGGTTGCAACT | + |
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Preference number: 1 (lower is better) Translates to: QNWNHYRWYREPSTP*WTGNRQRAYRLVAT Trigger: AGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATCAGGGGGTGGAGGGTTCTCTGTACCACCTATAATGATTCCAATTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 90 bp | AGTGCCTCCACAATTCCTGGTGGCTGCTACACTTCTACCTCTGCTTaGCATTTCCCCAGCAGGCATTCACAGCTAGGACCACACCACCAA | + |
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Preference number: 2 (lower is better) Translates to: SASTIPGGCYTSTSA*HFPSRHSQLGPHHQ Trigger: TTGGTGGTGTGGTCCTAGCTGTGAATGCCTGCTGGGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CCA 90 bp | TATTGTTTTGCAGGGGTGGTGTCCTCTGTAGGCTCTGGCATGCAGTCTCCCAGCTGCCTCCACAATTCCTaGTGGCTGCTACACTTCTAC | + |
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Preference number: 2 (lower is better) Translates to: YCFAGVVSSVGSGMQSPSCLHNS*WLLHFY Trigger: GTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCA...GCTGGGAGACTGCATGCCAGAGCCTACAGAGGACACCACCCCTGCAAAACAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR TCA 90 bp | GGAACCGACAGAGAGCTTATAGACTGGTTGCAACTACAAGGAGTGGATGCCAATCAGGAGTCTTCACAGTaGGCCAAGCCTGGGGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: GTDRELIDWLQLQGVDANQESSQ*AKPGEN Trigger: ATTCTCCCCAGGCTTGGCTCACTGTGAAGACTCCTG...ATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | ATGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCAGACATGATGGTCAGTaGCTCCACAATTCCTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: MQSPSTEDKCRSLHSEPSRHDGQ*LHNSWW Trigger: CCACCAGGAATTGTGGAGGCACTGACCATCATGTCT...GCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CCA 90 bp | GGAACCGACAGAGAGCTTATAGACTGGTTGCAACTACAAGGAGTGGATGCCAATCTCCACAATTCCTGGTaGCTGCTACACTTCTACCTC | + |
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Preference number: 2 (lower is better) Translates to: GTDRELIDWLQLQGVDANLHNSW*LLHFYL Trigger: GAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAG...ATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 90 bp | TACATGTTTTCAAGCCTTTTGTTGTCTGGGTATTTCCTGTCCAAGTaGAGAGCACAGAGTTCCTTACGCTGGATGGGAACACCCATCCAC | + |
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Preference number: 2 (lower is better) Translates to: YMFSSLLLSGYFLSK*RAQSSLRWMGTPIH Trigger: GTGGATGGGTGTTCCCATCCAGCGTAAGGAACTCTGTGCTCTCAACTTGGACAGGAAATACCCAGACAACAAAAGGCTTGAAAACATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 90 bp | CCACCCCCTGATGGACTGGGAACCGACAGAGAGCTTATAGACTGGTaGCAACTACAAGGAGTGGATGCCAATACAATAGAAAAGGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: PPPDGLGTDRELIDW*QLQGVDANTIEKVN Trigger: ATTTACCTTTTCTATTGTATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATCAGGGGGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCCTATGTCACAGCAAACAGAGCTCATTTTCTCAGGTTCAGGGTGGCAAGGCATTTCCTGTCCAAGTTaGGAGCACAGAGTTCCTTAC | + |
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Preference number: 2 (lower is better) Translates to: FPMSQQTELIFSGSGWQGISCPS*EHRVPY Trigger: GTAAGGAACTCTGTGCTCTCAACTTGGACAGGAAAT...GCCTTGCCACCCTGAACCTGAGAAAATGAGCTCTGTTTGCTGTGACATAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCCTATGTCACAGCAAACAGAGCTCATTTTCTCAGGTTCAGGGTGGCAAGGCAGCACAGAAGACAAATaGAGGAGTCTTCACAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: FPMSQQTELIFSGSGWQGSTEDK*RSLHSE Trigger: CTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCT...GCCTTGCCACCCTGAACCTGAGAAAATGAGCTCTGTTTGCTGTGACATAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCCTATGTCACAGCAAACAGAGCTCATTTTCTCAGGTTCAGGGTGGCAAGGCTGCAAATTATTGTTTTaGAGGGGTGGTGTCCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: FPMSQQTELIFSGSGWQGCKLLF*RGGVLC Trigger: ACAGAGGACACCACCCCTGCAAAACAATAATTTGCA...GCCTTGCCACCCTGAACCTGAGAAAATGAGCTCTGTTTGCTGTGACATAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCCTATGTCACAGCAAACAGAGCTCATTTTCTCAGGTTCAGGGTGGCAAGGCTTAAAAAGTGTGCCTTaGAATGGGAGTACAGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: FPMSQQTELIFSGSGWQGLKSVP*NGSTVS Trigger: TGAAACTGTACTCCCATTGCAAGGCACACTTTTTAA...GCCTTGCCACCCTGAACCTGAGAAAATGAGCTCTGTTTGCTGTGACATAGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CCA 90 bp | AATGTCAGCCCTGACCTAATATTTAAAAAGTCAGCATATCGCTGGAAAGATAAAGTTCCTTACGCTGGATaGGAACACCCATCCACCCAC | + |
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Preference number: 2 (lower is better) Translates to: NVSPDLIFKKSAYRWKDKVPYAG*EHPSTH Trigger: GTGGGTGGATGGGTGTTCCCATCCAGCGTAAGGAAC...TTTATCTTTCCAGCGATATGCTGACTTTTTAAATATTAGGTCAGGGCTGACATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CCA 90 bp | ATACTTAAAAATGCTAGTAGCTCTCCCCTATCTTTCCTATGTCACAGCAAACAGAAGCCTTTTGTTGTCTaGGTATTTCCTGTCCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: ILKNASSSPLSFLCHSKQKPFVV*VFPVQV Trigger: AACTTGGACAGGAAATACCCAGACAACAAAAGGCTT...CTGTTTGCTGTGACATAGGAAAGATAGGGGAGAGCTACTAGCATTTTTAAGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 90 bp | GACCCTTGTCCATTTAATTCAAGCACGTGTGATTGTAGAGCATCCTaGTTTATAAACAAGATTGTAAGTAATGTCAGCCCTGACCTAATA | + |
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Preference number: 2 (lower is better) Translates to: DPCPFNSSTCDCRAS*FINKIVSNVSPDLI Trigger: TATTAGGTCAGGGCTGACATTACTTACAATCTTGTTTATAAACAAGGATGCTCTACAATCACACGTGCTTGAATTAAATGGACAAGGGTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | GTCAGCCCTGACCTAATATTTAAAAAGTCAGCATATCGCTGGAAAGATAAAGCAGATGGTTATAAACTCTaGAATACCCATCTCAAATCC | + |
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Preference number: 2 (lower is better) Translates to: VSPDLIFKKSAYRWKDKADGYKL*NTHLKS Trigger: GGATTTGAGATGGGTATTGCAGAGTTTATAACCATC...TGCTTTATCTTTCCAGCGATATGCTGACTTTTTAAATATTAGGTCAGGGCTGAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR GCA 90 bp | AGTTTAATTCGTTTCCTTTTCACAGCACATGACATTTCTGTTGCGATACATCATGGCTGGCTTCAAGTTTaGTTTTCTTCTGCAAATTAT | + |
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Preference number: 2 (lower is better) Translates to: SLIRFLFTAHDISVAIHHGWLQV*FSSANY Trigger: ATAATTTGCAGAAGAAAAGCAAACTTGAAGCCAGCC...ATGATGTATCGCAACAGAAATGTCATGTGCTGTGAAAAGGAAACGAATTAAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CCA 90 bp | CCATACGTTGAATCTTTCAGATTGTTGAAGAGGACTATACACTTTCTGATATTCTATTTAAAGAGTAGATaGCTGGCTTCAAGTTTGCTT | + |
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Preference number: 2 (lower is better) Translates to: PYVESFRLLKRTIHFLIFYLKSR*LASSLL Trigger: AAGCAAACTTGAAGCCAGCCATCTACTCTTTAAATA...GAATATCAGAAAGTGTATAGTCCTCTTCAACAATCTGAAAGATTCAACGTATGG 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR TCA 72 bp | TCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTaGGCCAAGCCTGGGGAGAATGGGCAAAAAGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: SQHRRQMQESSQ*AKPGENGQKVP Trigger: GGGGACTTTTTGCCCATTCTCCCCAGGCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 72 bp | AAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCCTaGGGAGAATGGGCAAAAAGTCCCCTACACCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: KTNAGVFTVSQA*GEWAKSPLHLL Trigger: GAGCAGGTGTAGGGGACTTTTTGCCCATTCTCCCCAGGCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 72 bp | CAGAGACATGATGGTCAGTGCCTCCACAATTCCTGGTaGCTGCTACACTTCTACCTCTGCTTTGCATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: QRHDGQCLHNSW*LLHFYLCFAFP Trigger: GGGAAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACCATCATGTCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 72 bp | TTATTGTTTTGCAGGGGTGGTGTCCTCTGTAGGCTCTaGCATGCAGTCTCCCAGCACAGAAGACAAATGCAG | + |
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Preference number: 3 (lower is better) Translates to: LLFCRGGVLCRL*HAVSQHRRQMQ Trigger: CTGCATTTGTCTTCTGTGCTGGGAGACTGCATGCCAGAGCCTACAGAGGACACCACCCCTGCAAAACAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR TCA 72 bp | AATCATTATAGGTGGTACAGAGAACCCTCCACCCCCTaGTGGACTGGGAACCGACAGAGAGCTTATAGACTG | + |
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Preference number: 3 (lower is better) Translates to: NHYRWYREPSTP*WTGNRQRAYRL Trigger: CAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATCAGGGGGTGGAGGGTTCTCTGTACCACCTATAATGATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 72 bp | GATCAGAGACATGATGGTCAGTGCCTCCACAATTCCTaGTGGCTGCTACACTTCTACCTCTGCTTTGCATTT | + |
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Preference number: 3 (lower is better) Translates to: DQRHDGQCLHNS*WLLHFYLCFAF Trigger: AAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTGACCATCATGTCTCTGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CAA 90 bp | CAGTGCCTCCACAATTCCTGGTGGCTGCTACACTTCTACCTCTGCTTTGCATTTTATTTCCTGTCCAAGTaGAGAGCACAGAGTTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: QCLHNSWWLLHFYLCFAFYFLSK*RAQSSL Trigger: TAAGGAACTCTGTGCTCTCAACTTGGACAGGAAATA...AAATGCAAAGCAGAGGTAGAAGTGTAGCAGCCACCAGGAATTGTGGAGGCACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CCA 72 bp | CCTGATGGACTGGGAACCGACAGAGAGCTTATAGACTaGTTGCAACTACAAGGAGTGGATGCCAATACAATA | + |
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Preference number: 3 (lower is better) Translates to: PDGLGTDRELID*LQLQGVDANTI Trigger: TATTGTATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CAA 90 bp | GGAACCGACAGAGAGCTTATAGACTGGTTGCAACTACAAGGAGTGGATGCCAATATGTTTTCAAGCCTTTaGTTGTCTGGGTATTTCCTG | + |
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Preference number: 3 (lower is better) Translates to: GTDRELIDWLQLQGVDANMFSSL*LSGYFL Trigger: CAGGAAATACCCAGACAACAAAAGGCTTGAAAACAT...ATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR TCA 72 bp | CAGAGCTCATTTTCTCAGGTTCAGGGTGGCAAGGCATaGAGTGATAGACCTTTCTTTACACTCTTGTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: QSSFSQVQGGKA*SDRPFFTLLFK Trigger: TTTAAACAAGAGTGTAAAGAAAGGTCTATCACTTCATGCCTTGCCACCCTGAACCTGAGAAAATGAGCTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CAA 90 bp | CCATACGTTGAATCTTTCAGATTGTTGAAGAGGACTATACACTTTCTGATATTCACTTCTACCTCTGCTTaGCATTTCCCCAGCAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: PYVESFRLLKRTIHFLIFTSTSA*HFPSRH Trigger: ATGCCTGCTGGGGAAATGCAAAGCAGAGGTAGAAGT...GAATATCAGAAAGTGTATAGTCCTCTTCAACAATCTGAAAGATTCAACGTATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CAA 90 bp | ATACTTAAAAATGCTAGTAGCTCTCCCCTATCTTTCCTATGTCACAGCAAACAGGTTAAAAAGTGTGCCTaGCAATGGGAGTACAGTTTC | + |
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Preference number: 3 (lower is better) Translates to: ILKNASSSPLSFLCHSKQVKKCA*QWEYSF Trigger: GAAACTGTACTCCCATTGCAAGGCACACTTTTTAAC...CTGTTTGCTGTGACATAGGAAAGATAGGGGAGAGCTACTAGCATTTTTAAGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR-3UTR CAA 90 bp | AGTTTAATTCGTTTCCTTTTCACAGCACATGACATTTCTGTTGCGATACATCATTTTTCAAGCCTTTTGTaGTCTGGGTATTTCCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: SLIRFLFTAHDISVAIHHFSSLL*SGYFLS Trigger: GGACAGGAAATACCCAGACAACAAAAGGCTTGAAAA...ATGATGTATCGCAACAGAAATGTCATGTGCTGTGAAAAGGAAACGAATTAAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR GCA 72 bp | TACCTAACCCGGGATATGATGGATGGTTATAAACTCTaGAATACCCATCTCAAATCCTATACAAATCCAATA | + |
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Preference number: 3 (lower is better) Translates to: YLTRDMMDGYKL*NTHLKSYTNPI Trigger: TATTGGATTTGTATAGGATTTGAGATGGGTATTGCAGAGTTTATAACCATCCATCATATCCCGGGTTAGGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR TCA 72 bp | CCTATGATATTGTTGAAAAGCTGCTTATCCATACGTTaGATCTTTCAGATTGTTGAAGAGGACTATACACTT | + |
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Preference number: 3 (lower is better) Translates to: PMILLKSCLSIR*IFQIVEEDYTL Trigger: AAGTGTATAGTCCTCTTCAACAATCTGAAAGATTCAACGTATGGATAAGCAGCTTTTCAACAATATCATAGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | TTGCATTTCCCCAGCAGGCATTCACAGCTAGGACCACACCACCAAATGGCAGATGGCCAGGGCAATTCCTaGTCCCAGGGGCACCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: LHFPSRHSQLGPHHQMADGQGNS*SQGHLS Trigger: GCTCAGGTGCCCCTGGGAGCAGGAATTGCCCTGGCC...ATCTGCCATTTGGTGGTGTGGTCCTAGCTGTGAATGCCTGCTGGGGAAATGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | TGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCCAGCCGCAAACTTTGTTaGCTCTCGGACGCACAAGAT | + |
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Preference number: 4 (lower is better) Translates to: CSLPAQKTNAGVFTVSQASRKLC*LSDAQD Trigger: ATCTTGTGCGTCCGAGAGGCAACAAAGTTTGCGGCT...GGCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | GCTCATTTTCTCAGGTTCAGGGTGGCAAGGCATGAAGTGATAGACCTTTCTTTAGTCCGTGCTGGCTGCTaGTCTCTCAACAGACGTCCC | + |
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Preference number: 4 (lower is better) Translates to: AHFLRFRVARHEVIDLSLVRAGC*SLNRRP Trigger: GGGACGTCTGTTGAGAGAGCAGCAGCCAGCACGGAC...TAAAGAAAGGTCTATCACTTCATGCCTTGCCACCCTGAACCTGAGAAAATGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR TCA 90 bp | ATACTTAAAAATGCTAGTAGCTCTCCCCTATCTTTCCTATGTCACAGCAAACAGGCTCCCAGGGGCACCTaGGCTCCAACGATGCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: ILKNASSSPLSFLCHSKQAPRGT*APTMPL Trigger: CAACGGCATCGTTGGAGCTCAGGTGCCCCTGGGAGC...CTGTTTGCTGTGACATAGGAAAGATAGGGGAGAGCTACTAGCATTTTTAAGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | ATGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCCTTTTCCATTGTACTTaGAGGCCAGGGCAATTCCTG | + |
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Preference number: 4 (lower is better) Translates to: MQSPSTEDKCRSLHSEPSLFHCT*RPGQFL Trigger: CAGGAATTGCCCTGGCCTGCAAGTACAATGGAAAAG...GCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR CCA 90 bp | GGAACCGACAGAGAGCTTATAGACTGGTTGCAACTACAAGGAGTGGATGCCAATTCAGCCGTGGCAAACTaGGCAGCATCCTCGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: GTDRELIDWLQLQGVDANSAVAN*AASSIS Trigger: AGAAATCGAGGATGCTGCCCAGTTTGCCACGGCTGA...ATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR TCA 90 bp | GCTCATTTTCTCAGGTTCAGGGTGGCAAGGCATGAAGTGATAGACCTTTCTTTAGGCGTACATGTGCATTaGCCCGCCTTTCCCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: AHFLRFRVARHEVIDLSLGVHVH*PAFPFS Trigger: GCTAAAGGGAAAGGCGGGTCAATGCACATGTACGCC...TAAAGAAAGGTCTATCACTTCATGCCTTGCCACCCTGAACCTGAGAAAATGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | GCTCATTTTCTCAGGTTCAGGGTGGCAAGGCATGAAGTGATAGACCTTTCTTTAGGATTTCTTCTCGAGTaGGGTAGCTTACTCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: AHFLRFRVARHEVIDLSLGFLLE*GSLLQG Trigger: ACCCTGGAGTAAGCTACCGCACTCGAGAAGAAATCC...TAAAGAAAGGTCTATCACTTCATGCCTTGCCACCCTGAACCTGAGAAAATGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 72 bp | TCAAGCCTTTTGTTGTCTGGGTATTTCCTGTCCAAGTaGAGAGCACAGAGTTCCTTACGCTGGATGGGAACA | + |
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Preference number: 4 (lower is better) Translates to: SSLLLSGYFLSK*RAQSSLRWMGT Trigger: TGTTCCCATCCAGCGTAAGGAACTCTGTGCTCTCAACTTGGACAGGAAATACCCAGACAACAAAAGGCTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 72 bp | GATGGACTGGGAACCGACAGAGAGCTTATAGACTGGTaGCAACTACAAGGAGTGGATGCCAATACAATAGAA | + |
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Preference number: 4 (lower is better) Translates to: DGLGTDRELIDW*QLQGVDANTIE Trigger: TTCTATTGTATTGGCATCCACTCCTTGTAGTTGCAACCAGTCTATAAGCTCTCTGTCGGTTCCCAGTCCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | ATGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCAAATGTAGCATCATTTaGAAAATTACGGGAAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: MQSPSTEDKCRSLHSEPSKCSII*KITGSN Trigger: GTTGCTTCCCGTAATTTTGCAAATGATGCTACATTT...GCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | GTCAGCCCTGACCTAATATTTAAAAAGTCAGCATATCGCTGGAAAGATAAAGCAGAAGGTGAAGCCATGTaGTCGATAGGCAGTGATGAG | + |
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Preference number: 4 (lower is better) Translates to: VSPDLIFKKSAYRWKDKAEGEAM*SIGSDE Trigger: CTCATCACTGCCTATCGAGCACATGGCTTCACCTTC...TGCTTTATCTTTCCAGCGATATGCTGACTTTTTAAATATTAGGTCAGGGCTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR GCA 90 bp | ATACTTAAAAATGCTAGTAGCTCTCCCCTATCTTTCCTATGTCACAGCAAACAGCAAAGGGAGGATCACTaGTGTAGATGTGATAGCCTA | + |
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Preference number: 4 (lower is better) Translates to: ILKNASSSPLSFLCHSKQQREDH*CRCDSL Trigger: TAGGCTATCACATCTACAGCAGTGATCCTCCCTTTG...CTGTTTGCTGTGACATAGGAAAGATAGGGGAGAGCTACTAGCATTTTTAAGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR TCA 90 bp | GTCAGCCCTGACCTAATATTTAAAAAGTCAGCATATCGCTGGAAAGATAAAGCAGACAGAAACCACGAATaGTTTTCTGCTTATACAGCT | + |
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Preference number: 4 (lower is better) Translates to: VSPDLIFKKSAYRWKDKADRNHE*FSAYTA Trigger: AGCTGTATAAGCAGAAAATCATTCGTGGTTTCTGTC...TGCTTTATCTTTCCAGCGATATGCTGACTTTTTAAATATTAGGTCAGGGCTGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 72 bp | CCATTTAATTCAAGCACGTGTGATTGTAGAGCATCCTaGTTTATAAACAAGATTGTAAGTAATGTCAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: PFNSSTCDCRAS*FINKIVSNVSP Trigger: AGGGCTGACATTACTTACAATCTTGTTTATAAACAAGGATGCTCTACAATCACACGTGCTTGAATTAAATGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| 3UTR CAA 72 bp | AAAGCTGCTTATCCATACGTTGAATCTTTCAGATTGTaGAAGAGGACTATACACTTTCTGATATTCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: KAAYPYVESFRL*KRTIHFLIFSM Trigger: CATTGAGAATATCAGAAAGTGTATAGTCCTCTTCAACAATCTGAAAGATTCAACGTATGGATAAGCAGCTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS GCA 90 bp | AAGAATTGCTCGCACAGGCAGGCCCCGAGTGAAGGTGAAGCCATGTaGTCGATAGGCAGTGATGAGGTGGTCCGTAGGGTTTATGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: KNCSHRQAPSEGEAM*SIGSDEVVRRVYAS Trigger: GCTGGCATAAACCCTACGGACCACCTCATCACTGCCTATCGAGCACATGGCTTCACCTTCACTCGGGGCCTGCCTGTGCGAGCAATTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR CAA 90 bp | TATTGTTTTGCAGGGGTGGTGTCCTCTGTAGGCTCTGGCATGCAGTCTCCCAGCCAGCCGCAAACTTTGTaGCCTCTCGGACGCACAAGA | + |
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Preference number: 5 (lower is better) Translates to: YCFAGVVSSVGSGMQSPSQPQTL*PLGRTR Trigger: TCTTGTGCGTCCGAGAGGCAACAAAGTTTGCGGCTG...GCTGGGAGACTGCATGCCAGAGCCTACAGAGGACACCACCCCTGCAAAACAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR CAA 90 bp | TGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCACAGTGAGCCAAGCCAGGCAGCCGCAAACTTaGTTGCCTCTCGGACGCACA | + |
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Preference number: 5 (lower is better) Translates to: CSLPAQKTNAGVFTVSQARQPQT*LPLGRT Trigger: TGTGCGTCCGAGAGGCAACAAAGTTTGCGGCTGCCT...GGCTTGGCTCACTGTGAAGACTCCTGCATTTGTCTTCTGTGCTGGGAGACTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR CAA 90 bp | TATTGTTTTGCAGGGGTGGTGTCCTCTGTAGGCTCTGGCATGCAGTCTCCCAGCACCTCATCTTTTCCATaGTACTTGCAGGCCAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: YCFAGVVSSVGSGMQSPSTSSFP*YLQARA Trigger: TGCCCTGGCCTGCAAGTACAATGGAAAAGATGAGGT...GCTGGGAGACTGCATGCCAGAGCCTACAGAGGACACCACCCCTGCAAAACAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS-3UTR CAA 90 bp | GTCAGCCCTGACCTAATATTTAAAAAGTCAGCATATCGCTGGAAAGATAAAGCACTGACTGACTTAAACTaGATCCACTGGTTGGCACCA | + |
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Preference number: 5 (lower is better) Translates to: VSPDLIFKKSAYRWKDKALTDLN*IHWLAP Trigger: TGGTGCCAACCAGTGGATCAAGTTTAAGTCAGTCAG...TGCTTTATCTTTCCAGCGATATGCTGACTTTTTAAATATTAGGTCAGGGCTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS GCA 72 bp | TTACGGGAAGCAACCAGCACTCGGCTTGCCGGCTTCTaGGCAGAGCCTGCCAACACGCGGGATACAGCGGCA | + |
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Preference number: 6 (lower is better) Translates to: LREATSTRLAGF*AEPANTRDTAA Trigger: TGCCGCTGTATCCCGCGTGTTGGCAGGCTCTGCGCAGAAGCCGGCAAGCCGAGTGCTGGTTGCTTCCCGTAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS GCA 72 bp | AACCAGCACTCGGCTTGCCGGCTTCTGCGCAGAGCCTaGCAACACGCGGGATACAGCGGCAAGCATCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: NQHSACRLLRRA*QHAGYSGKHLP Trigger: AGGAAGATGCTTGCCGCTGTATCCCGCGTGTTGGCAGGCTCTGCGCAGAAGCCGGCAAGCCGAGTGCTGGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS GCA 72 bp | TCGCACAGGCAGGCCCCGAGTGAAGGTGAAGCCATGTaGTCGATAGGCAGTGATGAGGTGGTCCGTAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: SHRQAPSEGEAM*SIGSDEVVRRV Trigger: AACCCTACGGACCACCTCATCACTGCCTATCGAGCACATGGCTTCACCTTCACTCGGGGCCTGCCTGTGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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| CDS GCA 72 bp | ATCTTTTCCATTGTACTTGCAGGCCAGGGCAATTCCTaGTCCCAGGGGCACCTGAGCTCCAACGATGCCGTT | + |
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Preference number: 6 (lower is better) Translates to: IFSIVLAGQGNS*SQGHLSSNDAV Trigger: AACGGCATCGTTGGAGCTCAGGTGCCCCTGGGAGCAGGAATTGCCCTGGCCTGCAAGTACAATGGAAAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033662.9 |
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