RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDGFRA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029231

Ensembl transcript IDs: ENSMUST00000000476.15, ENSMUST00000168162.5, ENSMUST00000200822.2, ENSMUST00000201711.4, ENSMUST00000202161.4, ENSMUST00000202186.4, ENSMUST00000202681.4, ENSMUST00000202992.4

Found 371 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAGTTGTCTGCAGTACAAGTTGGCGCGTGTGGGACTCTCACCCATaGCCTGGAAACACAAAGCCCGTCTTCTGTGGCCAGTCACTCTCT +
Preference number: 1 (lower is better)
Translates to: GVVCSTSWRVWDSHP*PGNTKPVFCGQSLS
Trigger: AGAGAGTGACTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp GTGGGACTCTCACCCATGCCCTGGAAACACAAAGCCCGTCTTCTGTaGCCAGTCACTCTCTTGTCCATCCATTTCCAAACCGCACACGCC +
Preference number: 1 (lower is better)
Translates to: VGLSPMPWKHKARLL*PVTLLSIHFQTAHA
Trigger: GGCGTGTGCGGTTTGGAAATGGATGGACAAGAGAGTGACTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp TGTCTGCAGTACAAGTTGGCGCGTGTGGGACTCTCACCCATGCCCTaGAAACACAAAGCCCGTCTTCTGTGGCCAGTCACTCTCTTGTCC +
Preference number: 1 (lower is better)
Translates to: CLQYKLARVGLSPMP*KHKARLLWPVTLLS
Trigger: GGACAAGAGAGTGACTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp CAGCTGGTACCGGATTCCAAGAAGGAAGGAAGCACACGGGTGGACTaGGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATC +
Preference number: 1 (lower is better)
Translates to: QLVPDSKKEGSTRVD*VVSSEVRRGELTQI
Trigger: GATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACCCGTGTGCTTCCTTCCTTCTTGGAATCCGGTACCAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp AATGAGTCTCTTCCAGAAGGTCGCACACAGCGTGAGGAGTCACACTaGGCTCAGGCGTACGCCTTTCTACTGAGAACACTTAGGACACCC +
Preference number: 1 (lower is better)
Translates to: NESLPEGRTQREESH*AQAYAFLLRTLRTP
Trigger: GGGTGTCCTAAGTGTTCTCAGTAGAAAGGCGTACGCCTGAGCCCAGTGTGACTCCTCACGCTGTGTGCGACCTTCTGGAAGAGACTCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp GCCAGTCACTCTCTTGTCCATCCATTTCCAAACCGCACACGCCGCTaGGATGCTACTGACGCGTTGCAAGAGGCAACACGGATAAAGTTC +
Preference number: 1 (lower is better)
Translates to: ASHSLVHPFPNRTRR*DATDALQEATRIKF
Trigger: GAACTTTATCCGTGTTGCCTCTTGCAACGCGTCAGTAGCATCTCAGCGGCGTGTGCGGTTTGGAAATGGATGGACAAGAGAGTGACTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 90 bp CTCACACATAGAGCACAAATCTACAAAAAGCTATCTTGGCCCAGCTaGGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACC +
Preference number: 1 (lower is better)
Translates to: LTHRAQIYKKLSWPS*AAVHLGSTLLGRAT
Trigger: GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
3UTR TCA 90 bp TATGGGCGGGATCCATCCAAGCCATCACTGGTCAGGAGAGACATCTaGGTCCCATCTGATGGACATTCTGCCCATCTGAGTCCTTTTTGT +
Preference number: 1 (lower is better)
Translates to: YGRDPSKPSLVRRDI*VPSDGHSAHLSPFC
Trigger: ACAAAAAGGACTCAGATGGGCAGAATGTCCATCAGATGGGACTCAGATGTCTCTCCTGACCAGTGATGGCTTGGATGGATCCCGCCCATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp CATAATTACAATGCTGGAGTTGTCTGCAGTACAAGTTGGCGCGTGTaGGACTCTCACCCATGCCCTGGAAACACAAAGCCCGTCTTCTGT +
Preference number: 1 (lower is better)
Translates to: HNYNAGVVCSTSWRV*DSHPCPGNTKPVFC
Trigger: ACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp GAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGTACCCACGTTaGCTAGAATGGGAAGATGTTCCCAAGTCAAGATGTTTGCTTTCT +
Preference number: 1 (lower is better)
Translates to: EQAQVLPSRGKWYPR*LEWEDVPKSRCLLS
Trigger: AGAAAGCAAACATCTTGACTTGGGAACATCTTCCCATTCTAGTCAACGTGGGTACCACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp TCTTGTCCATCCATTTCCAAACCGCACACGCCGCTGAGATGCTACTaGCGCGTTGCAAGAGGCAACACGGATAAAGTTCAATCCAAGTAT +
Preference number: 1 (lower is better)
Translates to: SCPSISKPHTPLRCY*RVARGNTDKVQSKY
Trigger: ATACTTGGATTGAACTTTATCCGTGTTGCCTCTTGCAACGCGTCAGTAGCATCTCAGCGGCGTGTGCGGTTTGGAAATGGATGGACAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp TCTCTCCACATCACCCAAGTCCTCTTCTCAACTTTTGCATTGCAATaGAGTGGTTTTCTTAAGGTTATCCCGAGGAGGCTCCCGGAGAAG +
Preference number: 1 (lower is better)
Translates to: SLHITQVLFSTFALQ*SGFLKVIPRRLPEK
Trigger: CTTCTCCGGGAGCCTCCTCGGGATAACCTTAAGAAAACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGACTTGGGTGATGTGGAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 90 bp CTTTCTCTCTCCACATCACCCAAGTCCTCTTCTCAACTTTTGCATTaGAATGAAGTGGTTTTCTTAAGGTTATCCCGAGGAGGCTCCCGG +
Preference number: 1 (lower is better)
Translates to: LSLSTSPKSSSQLLH*NEVVFLRLSRGGSR
Trigger: CCGGGAGCCTCCTCGGGATAACCTTAAGAAAACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGACTTGGGTGATGTGGAGAGAGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 90 bp TCCTCGGTTAAGAGTTATTTACATAATTACAATGCTGGAGTTGTCTaGAGTACAAGTTGGCGCGTGTGGGACTCTCACCCATGCCCTGGA +
Preference number: 1 (lower is better)
Translates to: SSVKSYLHNYNAGVV*STSWRVWDSHPCPG
Trigger: TCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATGTAAATAACTCTTAACCGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp AGTTATTTACATAATTACAATGCTGGAGTTGTCTGCAGTACAAGTTaGCGCGTGTGGGACTCTCACCCATGCCCTGGAAACACAAAGCCC +
Preference number: 1 (lower is better)
Translates to: SYLHNYNAGVVCSTS*RVWDSHPCPGNTKP
Trigger: GGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATGTAAATAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 90 bp ATTCCCATTGAATCTCAGAGGTGGGTACAGCTAAAGATGGGAAACTaGTGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGG +
Preference number: 1 (lower is better)
Translates to: IPIESQRWVQLKMGN*WSEKYHPTSWCHAR
Trigger: CCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCAGCAGTTTCCCATCTTTAGCTGTACCCACCTCTGAGATTCAATGGGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 90 bp ATATATAGCTTCCTGCTCCCGTCAGACCTTGTAATTCCAAATCTCTaGGGCAAAGGTCTGACACCATTGAGGCTAGTAACTGTAGCTGTA +
Preference number: 1 (lower is better)
Translates to: IYSFLLPSDLVIPNL*GKGLTPLRLVTVAV
Trigger: TACAGCTACAGTTACTAGCCTCAATGGTGTCAGACCTTTGCCCCAGAGATTTGGAATTACAAGGTCTGACGGGAGCAGGAAGCTATATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp GTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATaGGAAAATTCAACAGCAGCTGGTACCGGATTCCAAGAAGGAAGG +
Preference number: 1 (lower is better)
Translates to: VPVPSKVQSGFACTS*ENSTAAGTGFQEGR
Trigger: CCTTCCTTCTTGGAATCCGGTACCAGCTGCTGTTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 90 bp AAATCAAGGGTAGGAATAGCTGCATACGTGGCATTGACATGTTATTaGCATGAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTG +
Preference number: 1 (lower is better)
Translates to: KSRVGIAAYVALTCY*HEAKNLNSSLPAWL
Trigger: CAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTCATGTCAATAACATGTCAATGCCACGTATGCAGCTATTCCTACCCTTGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 90 bp TATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTaGGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAG +
Preference number: 1 (lower is better)
Translates to: YTPGKQYTIGLHQQP*VFILLTHRAQIYKK
Trigger: CTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
3UTR GCA 90 bp GGGTTTGCTTTCAAACAAAAGTCAACAGGAACACTTGTCAGATACTaGAACCTCAAACTGTCTGCTCTCCAGTTAGTGTCACAACATGTA +
Preference number: 1 (lower is better)
Translates to: GFAFKQKSTGTLVRY*NLKLSALQLVSQHV
Trigger: TACATGTTGTGACACTAACTGGAGAGCAGACAGTTTGAGGTTGCAGTATCTGACAAGTGTTCCTGTTGACTTTTGTTTGAAAGCAAACCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
3UTR-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGAAGGAAGCACACGGGTaGACTGAGTGGTCTCTTCAG +
Preference number: 2 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVKEAHG*TEWSLQ
Trigger: CTGAAGAGACCACTCAGTCCACCCGTGTGCTTCCTT...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 90 bp ATGCCCTGGAAACACAAAGCCCGTCTTCTGTGGCCAGTCACTCTCTaGTCCATCCATTTCCAAACCGCACACGCCGCTGAGATGCTACTG +
Preference number: 2 (lower is better)
Translates to: MPWKHKARLLWPVTL*SIHFQTAHAAEMLL
Trigger: CAGTAGCATCTCAGCGGCGTGTGCGGTTTGGAAATGGATGGACAAGAGAGTGACTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACCGCTGAGATGCTACTaGCGCGTTGCAAGAGGCAAC +
Preference number: 2 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLPLRCY*RVARGN
Trigger: GTTGCCTCTTGCAACGCGTCAGTAGCATCTCAGCGG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGCCAAGTCAAGATGTTTaGTTTCTCAGCCTCAGCCAA +
Preference number: 2 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVPSQDV*FLSLSQ
Trigger: TTGGCTGAGGCTGAGAAAGCAAACATCTTGACTTGG...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGTAATTCCAAATCTCTaGGGCAAAGGTCTGACACCA +
Preference number: 2 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVVIPNL*GKGLTP
Trigger: TGGTGTCAGACCTTTGCCCCAGAGATTTGGAATTAC...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATGGGACTCTCACCCATaGCCTGGAAACACAAAGCCC +
Preference number: 2 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLWDSHP*PGNTKP
Trigger: GGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 90 bp CGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGTACCCACGTaGACTAGAATGGGAAGATGTTCCCAAGTCAAGATGTTTGCTTTC +
Preference number: 2 (lower is better)
Translates to: RASSGSPIQGEVVPT*TRMGRCSQVKMFAF
Trigger: GAAAGCAAACATCTTGACTTGGGAACATCTTCCCATTCTAGTCAACGTGGGTACCACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTTTGCATGTACTTCATaGGAAAATTCAACAGCAGCT +
Preference number: 2 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVFACTS*ENSTAA
Trigger: AGCTGCTGTTGAATTTTCTCATGAAGTACATGCAAA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAAAGGAAGCACACGGGTaGACTGAGTGGTCTCTTCAG +
Preference number: 2 (lower is better)
Translates to: WSEKYHPTSWCHARPKATKEAHG*TEWSLQ
Trigger: CTGAAGAGACCACTCAGTCCACCCGTGTGCTTCCTT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTTCCAAAGTTCAAAGTaGTTTTGCATGTACTTCATG +
Preference number: 2 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVFQSSK*FCMYFM
Trigger: CATGAAGTACATGCAAAACCACTTTGAACTTTGGAA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACACCCACCGGGTTTCTaGTTTGCTTATCCCAGTACT +
Preference number: 2 (lower is better)
Translates to: WSEKYHPTSWCHARPKATHPPGF*FAYPST
Trigger: AGTACTGGGATAAGCAAAGCAGAAACCCGGTGGGTG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 90 bp ACCCATCCTCGGTTAAGAGTTATTTACATAATTACAATGCTGGAGTaGTCTGCAGTACAAGTTGGCGCGTGTGGGACTCTCACCCATGCC +
Preference number: 2 (lower is better)
Translates to: THPRLRVIYIITMLE*SAVQVGACGTLTHA
Trigger: GGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATGTAAATAACTCTTAACCGAGGATGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 90 bp ATTAGACACATGGCAGAGAATGCCAATGAACTCACACTAACCACTTaGACAGTTCGGATGCTCCTGATAGCCTACCACCTAAAGGCCCCA +
Preference number: 2 (lower is better)
Translates to: IRHMAENANELTLTT*TVRMLLIAYHLKAP
Trigger: TGGGGCCTTTAGGTGGTAGGCTATCAGGAGCATCCGAACTGTCAAAGTGGTTAGTGTGAGTTCATTGGCATTCTCTGCCATGTGTCTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAAGCACACGGGTGGACTaGGTGGTCTCTTCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVSTRVD*VVSSEV
Trigger: GACCTCTGAAGAGACCACTCAGTCCACCCGTGTGCT...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATGTGGTCTCAGGGTTTaGAGTTCTTTCTCGTCTGAG +
Preference number: 2 (lower is better)
Translates to: WSEKYHPTSWCHARPKATCGLRV*SSFSSE
Trigger: CTCAGACGAGAAAGAACTGCAAACCCTGAGACCACA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACACGGGTGGACTGAGTaGTCTCTTCAGAGGTCCGGA +
Preference number: 2 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVHGWTE*SLQRSG
Trigger: TCCGGACCTCTGAAGAGACCACTCAGTCCACCCGTG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTCAACAGCACCATTGTaGTCTCAGGGTTTGCAGTTC +
Preference number: 2 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVSTAPL*SQGLQF
Trigger: GAACTGCAAACCCTGAGACCACAATGGTGCTGTTGA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 90 bp CGGGAACTTTCTCTCTCCACATCACCCAAGTCCTCTTCTCAACTTTaGCATTGCAATGAAGTGGTTTTCTTAAGGTTATCCCGAGGAGGC +
Preference number: 2 (lower is better)
Translates to: RELSLSTSPKSSSQL*HCNEVVFLRLSRGG
Trigger: GCCTCCTCGGGATAACCTTAAGAAAACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGACTTGGGTGATGTGGAGAGAGAAAGTTCCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAAGTGTTTCTGAACACTaGCTATTCAAGAGCACCAGG +
Preference number: 2 (lower is better)
Translates to: WSEKYHPTSWCHARPKATSVSEH*LFKSTR
Trigger: CCTGGTGCTCTTGAATAGTCAGTGTTCAGAAACACT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTATGGGACTCTCACCCATaGCCTGGAAACACAAAGCCC +
Preference number: 2 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVWDSHP*PGNTKP
Trigger: GGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCA...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAAGACATTCTGCCCATCTaGGTCCTTTTTGTGAATGAG +
Preference number: 2 (lower is better)
Translates to: HHCGLRVCSSFSSETREKDILPI*VLFVNE
Trigger: CTCATTCACAAAAAGGACTCAGATGGGCAGAATGTC...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATCTTCACACTTACTGTaGAAAGGGAAAGTTGGGGTT +
Preference number: 2 (lower is better)
Translates to: WSEKYHPTSWCHARPKATSSHLL*KGKVGV
Trigger: AACCCCAACTTTCCCTTTTCACAGTAAGTGTGAAGA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACCTCTTCTCAACTTTTaGATTGCAATGAAGTGGTTT +
Preference number: 2 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLPLLNF*IAMKWF
Trigger: AAACCACTTCATTGCAATGCAAAAGTTGAGAAGAGG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAAGCACACGGGTGGACTaGGTGGTCTCTTCAGAGGTC +
Preference number: 2 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQSTRVD*VVSSEV
Trigger: GACCTCTGAAGAGACCACTCAGTCCACCCGTGTGCT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR TCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTTTGCATGTACTTCATaGGAAAATTCAACAGCAGCT +
Preference number: 2 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVFACTS*ENSTAA
Trigger: AGCTGCTGTTGAATTTTCTCATGAAGTACATGCAAA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR GCA 90 bp AATGGCTTGTACCTTTCACTTAAGAACCCTGAAAGCATTCAGAGCATGTTAGCGCTACATCAGCAACCCTaGGTCTTTATTCTTCTCACA +
Preference number: 2 (lower is better)
Translates to: NGLYLSLKNPESIQSMLALHQQP*VFILLT
Trigger: TGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAG...CGCTAACATGCTCTGAATGCTTTCAGGGTTCTTAAGTGAAAGGTACAAGCCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
3UTR CCA 72 bp CAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTaGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTC +
Preference number: 3 (lower is better)
Translates to: QLRSRALREHTA*QSYLSSRFPSL
Trigger: GAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
3UTR-3UTR CAA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGATGCTACTGACGCGTaGCAAGAGGCAACACGGATA +
Preference number: 3 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVDATDA*QEATRI
Trigger: TATCCGTGTTGCCTCTTGCAACGCGTCAGTAGCATC...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp TGCAGTACAAGTTGGCGCGTGTGGGACTCTCACCCATaGCCTGGAAACACAAAGCCCGTCTTCTGTGGCCAG +
Preference number: 3 (lower is better)
Translates to: CSTSWRVWDSHP*PGNTKPVFCGQ
Trigger: CTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp CTGACACACAGACTTGCATCATTCCCGGACACACTTTaGGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGG +
Preference number: 3 (lower is better)
Translates to: LTHRLASFPDTL*GEQAQVLPSRG
Trigger: CCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGGAATGATGCAAGTCTGTGTGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 72 bp TACAAGTTGGCGCGTGTGGGACTCTCACCCATGCCCTaGAAACACAAAGCCCGTCTTCTGTGGCCAGTCACT +
Preference number: 3 (lower is better)
Translates to: YKLARVGLSPMP*KHKARLLWPVT
Trigger: AGTGACTGGCCACAGAAGACGGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp TCTCTTGTCCATCCATTTCCAAACCGCACACGCCGCTaGGATGCTACTGACGCGTTGCAAGAGGCAACACGG +
Preference number: 3 (lower is better)
Translates to: SLVHPFPNRTRR*DATDALQEATR
Trigger: CCGTGTTGCCTCTTGCAACGCGTCAGTAGCATCTCAGCGGCGTGTGCGGTTTGGAAATGGATGGACAAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 72 bp AATGCTGGAGTTGTCTGCAGTACAAGTTGGCGCGTGTaGGACTCTCACCCATGCCCTGGAAACACAAAGCCC +
Preference number: 3 (lower is better)
Translates to: NAGVVCSTSWRV*DSHPCPGNTKP
Trigger: GGGCTTTGTGTTTCCAGGGCATGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp ATGGAGCTGGTTGCACAAAGACCTGACACACAGACTTaGATCATTCCCGGACACACTTTGAGGCGAGCAAGC +
Preference number: 3 (lower is better)
Translates to: MELVAQRPDTQT*IIPGHTLRRAS
Trigger: GCTTGCTCGCCTCAAAGTGTGTCCGGGAATGATGCAAGTCTGTGTGTCAGGTCTTTGTGCAACCAGCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 72 bp AAAGTAGGTATGGGCGGGATCCATCCAAGCCATCACTaGTCAGGAGAGACATCTGAGTCCCATCTGATGGAC +
Preference number: 3 (lower is better)
Translates to: KVGMGGIHPSHH*SGETSESHLMD
Trigger: GTCCATCAGATGGGACTCAGATGTCTCTCCTGACCAGTGATGGCTTGGATGGATCCCGCCCATACCTACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CAA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTCCTCTTCTCAACTTTaGCATTGCAATGAAGTGGTT +
Preference number: 3 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVSSSQL*HCNEVV
Trigger: AACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp TCCATTTCCAAACCGCACACGCCGCTGAGATGCTACTaGCGCGTTGCAAGAGGCAACACGGATAAAGTTCAA +
Preference number: 3 (lower is better)
Translates to: SISKPHTPLRCY*RVARGNTDKVQ
Trigger: TTGAACTTTATCCGTGTTGCCTCTTGCAACGCGTCAGTAGCATCTCAGCGGCGTGTGCGGTTTGGAAATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp CAGGTTCTCCCATCCAGGGGGAAGTGGTACCCACGTTaGCTAGAATGGGAAGATGTTCCCAAGTCAAGATGT +
Preference number: 3 (lower is better)
Translates to: QVLPSRGKWYPR*LEWEDVPKSRC
Trigger: ACATCTTGACTTGGGAACATCTTCCCATTCTAGTCAACGTGGGTACCACTTCCCCCTGGATGGGAGAACCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp AATCCCAGCACTGGGGGTACAGAGACAGTGGATCTCTaGGAGTTCAAGGCTAGCCTGGTTTACACAGTGAGT +
Preference number: 3 (lower is better)
Translates to: NPSTGGTETVDL*EFKASLVYTVS
Trigger: ACTCACTGTGTAAACCAGGCTAGCCTTGAACTCTCAGAGATCCACTGTCTCTGTACCCCCAGTGCTGGGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CAA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAAGATGCTACTGACGCGTaGCAAGAGGCAACACGGATA +
Preference number: 3 (lower is better)
Translates to: HHCGLRVCSSFSSETREKDATDA*QEATRI
Trigger: TATCCGTGTTGCCTCTTGCAACGCGTCAGTAGCATC...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACCCAAGTCAAGATGTTaGCTTTCTCAGCCTCAGCCA +
Preference number: 3 (lower is better)
Translates to: WSEKYHPTSWCHARPKATPKSRC*LSQPQP
Trigger: TGGCTGAGGCTGAGAAAGCAAACATCTTGACTTGGG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 72 bp TTCCTGCTCCCGTCAGACCTTGTAATTCCAAATCTCTaGGGCAAAGGTCTGACACCATTGAGGCTAGTAACT +
Preference number: 3 (lower is better)
Translates to: FLLPSDLVIPNL*GKGLTPLRLVT
Trigger: AGTTACTAGCCTCAATGGTGTCAGACCTTTGCCCCAGAGATTTGGAATTACAAGGTCTGACGGGAGCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp GAGGTGGGTACAGCTAAAGATGGGAAACTGCTGGTCTaGGAAGTATCATCCAACTTCATGGTGTCATGCAAG +
Preference number: 3 (lower is better)
Translates to: EVGTAKDGKLLV*EVSSNFMVSCK
Trigger: CTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCAGCAGTTTCCCATCTTTAGCTGTACCCACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp GCCTTCATTCAACAGCACCATTGTGGTCTCAGGGTTTaGAGTTCTTTCTCGTCTGAGACAAGAGAGAAAAAG +
Preference number: 3 (lower is better)
Translates to: AFIQQHHCGLRV*SSFSSETREKK
Trigger: CTTTTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTGCTGTTGAATGAAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp GAATCTCAGAGGTGGGTACAGCTAAAGATGGGAAACTaGTGGTCTGAGAAGTATCATCCAACTTCATGGTGT +
Preference number: 3 (lower is better)
Translates to: ESQRWVQLKMGN*WSEKYHPTSWC
Trigger: ACACCATGAAGTTGGATGATACTTCTCAGACCAGCAGTTTCCCATCTTTAGCTGTACCCACCTCTGAGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp ATCACCCAAGTCCTCTTCTCAACTTTTGCATTGCAATaGAGTGGTTTTCTTAAGGTTATCCCGAGGAGGCTC +
Preference number: 3 (lower is better)
Translates to: ITQVLFSTFALQ*SGFLKVIPRRL
Trigger: GAGCCTCCTCGGGATAACCTTAAGAAAACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGACTTGGGTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp CCCCCAACAGTAACCCAAGCCAGTGTTTCTGAACACTaGCTATTCAAGAGCACCAGGCAGTTCATATATATA +
Preference number: 3 (lower is better)
Translates to: PPTVTQASVSEH*LFKSTRQFIYI
Trigger: TATATATATGAACTGCCTGGTGCTCTTGAATAGTCAGTGTTCAGAAACACTGGCTTGGGTTACTGTTGGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp AAGAGTTATTTACATAATTACAATGCTGGAGTTGTCTaGAGTACAAGTTGGCGCGTGTGGGACTCTCACCCA +
Preference number: 3 (lower is better)
Translates to: KSYLHNYNAGVV*STSWRVWDSHP
Trigger: TGGGTGAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATGTAAATAACTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp GGCAAGCAATATACCATAGGGCTACATCAGCAACCCTaGGTCTTTATTCTTCTCACACATAGAGCACAAATC +
Preference number: 3 (lower is better)
Translates to: GKQYTIGLHQQP*VFILLTHRAQI
Trigger: GATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
3UTR CCA 72 bp AACAAAAGTGAACGTATTCCCATTGAATCTCAGAGGTaGGTACAGCTAAAGATGGGAAACTGCTGGTCTGAG +
Preference number: 3 (lower is better)
Translates to: NKSERIPIESQR*VQLKMGNCWSE
Trigger: CTCAGACCAGCAGTTTCCCATCTTTAGCTGTACCCACCTCTGAGATTCAATGGGAATACGTTCACTTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CCA 72 bp CATGAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATaGTTGACTTCTAGCCCCGTTCCAAATTTCAAAGTT +
Preference number: 3 (lower is better)
Translates to: HEAKNLNSSLPA*LTSSPVPNFKV
Trigger: AACTTTGAAATTTGGAACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR TCA 72 bp CCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATaGGAAAATTCAACAGCAGCTGGTACCGGATTCCAA +
Preference number: 3 (lower is better)
Translates to: PSKVQSGFACTS*ENSTAAGTGFQ
Trigger: TTGGAATCCGGTACCAGCTGCTGTTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR GCA 72 bp TTCAAACAAAAGTCAACAGGAACACTTGTCAGATACTaGAACCTCAAACTGTCTGCTCTCCAGTTAGTGTCA +
Preference number: 3 (lower is better)
Translates to: FKQKSTGTLVRY*NLKLSALQLVS
Trigger: TGACACTAACTGGAGAGCAGACAGTTTGAGGTTGCAGTATCTGACAAGTGTTCCTGTTGACTTTTGTTTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
3UTR-3UTR CAA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTATCCTCTTCTCAACTTTaGCATTGCAATGAAGTGGTT +
Preference number: 3 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVSSSQL*HCNEVV
Trigger: AACCACTTCATTGCAATGCAAAAGTTGAGAAGAGGA...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCGATGTAAATGGGACCTaGCTTGGTGCAGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: WPSCAAVHLGSTLLGRATDVNGT*LGAGSQ
Trigger: CTGGGAGCCTGCACCAAGTCAGGTCCCATTTACATC...GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTGTCTGGCAGGGGGATaGTGTAGCCACTGTCAGCGC +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVCLAGG*CSHCQR
Trigger: GCGCTGACAGTGGCTACATCATCCCCCTGCCAGACA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CTATCTTGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGATGGGACCTGACTTGGTaGAGGCTCCCAGCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: LSWPSCAAVHLGSTLLGRWDLTW*RLPASS
Trigger: TGAACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCA...TCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGACTTCACTGGTGGCATaGTCAGGTTTGGCCATCCGG +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVTSLVA*SGLAIR
Trigger: CCGGATGGCCAAACCTGACCATGCCACCAGTGAAGT...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGCGTCTTCTTCAGACATaGGGTGCTGCCAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVRLLQT*GAASSL
Trigger: AAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACG...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTC +
Preference number: 4 (lower is better)
Translates to: AQLRSRALREHTAWQSYLTKPFS*TEMVTL
Trigger: GAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGT...CAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CTATCTTGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAAAATGGGACCTGACTTaGTGCAGGCTCCCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: LSWPSCAAVHLGSTLLGRKWDLT*CRLPAS
Trigger: ACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCATTT...TCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTCCAGCACTGCACCATaGTCTCATAGACTTCACTGG +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVSSTAP*SHRLHW
Trigger: CCAGTGAAGTCTATGAGATCATGGTGCAGTGCTGGA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAATCAGACATGGGGTGCTaGCAGCTCACTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQSDMGC*QLTSLS
Trigger: GGAGAGTGAAGTGAGCTGGCAGCACCCCATGTCTGA...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCCGTCTTCTTCAGACATaGGGTGCTGCCAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: HLGSTLLGRATCHPGFPPRLLQT*GAASSL
Trigger: AAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACG...GGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGGCTTCTCTGGGTGTTaGCTCATGAAGCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVGFSGC*LMKLSL
Trigger: CAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCC...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGAGACGTCACTCAGCGTaGTGTAGAGGTTGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVRRHSA*CRGCRR
Trigger: TCTTCGACAACCTCTACACCACGCTGAGTGACGTCT...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 72 bp CCTGACACACAGACTTGCATCATTCCCGGACACACTTaGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGG +
Preference number: 4 (lower is better)
Translates to: PDTQTCIIPGHT*RRASSGSPIQG
Trigger: CCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGGAATGATGCAAGTCTGTGTGTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTCTTATGCAAGTAGTTaGCCAAATCCCCATAGAAGC +
Preference number: 4 (lower is better)
Translates to: WPSCAAVHLGSTLLGRATSYASS*PNPHRS
Trigger: GCTTCTATGGGGATTTGGTCAACTACTTGCATAAGA...GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGCCGAAAGGAGGTTTTTaGCTTCTGAGTCTAGCATGG +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVPKGGF*LLSLAW
Trigger: CCATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGG...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CTATCTTGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGATCAGACATGAGAGCCTaGTTTTCACTAGACCTGGCT +
Preference number: 4 (lower is better)
Translates to: LSWPSCAAVHLGSTLLGRSDMRA*FSLDLA
Trigger: AGCCAGGTCTAGTGAAAAGCAGGCTCTCATGTCTGA...TCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAGTCCACCCGCATGCGTaGCACGGCCGGATGGTCACT +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATVHPHA*HGRMVT
Trigger: AGTGACCATCCGGCCGTGGCACGCATGCGGGTGGAC...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGCAGAAAGATCATATTTaGCAGAATGAGCATGGGCAC +
Preference number: 4 (lower is better)
Translates to: AQLRSRALREHTAWQSYLQKDHI*QNEHGH
Trigger: GTGCCCATGCTCATTCTGGCAAATATGATCTTTCTG...CAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAATTGACAGCTTCCAGCTaGCCAAAGGTGGGCTCAATC +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQLTASS*PKVGSI
Trigger: GATTGAGCCCACCTTTGGCCAGCTGGAAGCTGTCAA...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAAGGCATCGAACTGCGATaGTCTCTTCCACTTTGGCGA +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQGIELR*SLPLWR
Trigger: TCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCC...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CTATCTTGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGATTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCT +
Preference number: 4 (lower is better)
Translates to: LSWPSCAAVHLGSTLLGRFLRLL*VLAHEA
Trigger: AGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAA...TCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp GCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGCTCTGTGATAATATTTaGGACATTGCTGGCCAAAAC +
Preference number: 4 (lower is better)
Translates to: AQLRSRALREHTAWQSYLLCDNI*DIAGQN
Trigger: GTTTTGGCCAGCAATGTCTCAAATATTATCACAGAG...CAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGGAGCAACTTGATAGGTaGAGCTCAATAGATCCAGCA +
Preference number: 4 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVEQLDR*SSIDPA
Trigger: TGCTGGATCTATTGAGCTTCACCTATCAAGTTGCTC...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp AGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTTGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTT +
Preference number: 4 (lower is better)
Translates to: SRALREHTAWQSYLSSRFCQASN*DGLFHF
Trigger: AAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCA...AAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp AGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGAT +
Preference number: 4 (lower is better)
Translates to: SRALREHTAWQSYLSSRFAEVVL*QASNCD
Trigger: ATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGC...AAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp TGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTCGTACAGCGATCTCTaGATGTCAGAGTATTTAGAA +
Preference number: 4 (lower is better)
Translates to: WPSCAAVHLGSTLLGRATSYSDL*MSEYLE
Trigger: TTCTAAATACTCTGACATCCAGAGATCGCTGTACGA...GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp TGTGTATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTTCCATCGGGGCTGATTaGCTCGATAACCCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: CVYTGQAIYHRATSATLRSIGAD*LDNPPA
Trigger: CGCTGGAGGGTTATCGAGTCAATCAGCCCCGATGGA...ACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAAAAATGTGGCCCCAGGTaGGTCATTATCTTCAGCTCA +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQKCGPR*VIIFSS
Trigger: TGAGCTGAAGATAATGACTCACCTGGGGCCACATTT...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATGTCTGGCAGGGGGATaGTGTAGCCACTGTCAGCGC +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATCLAGG*CSHCQR
Trigger: GCGCTGACAGTGGCTACATCATCCCCCTGCCAGACA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CTATCTTGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: LSWPSCAAVHLGSTLLGRRCKCA*LRSHSH
Trigger: ATGAGAGTGAGATCGAAGGCAGGCACATTTACATCT...TCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCAAGATAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAATCATACCGTGGTTTCTaGTTCCAAATGACCACCAGG +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQSYRGF*FQMTTR
Trigger: CCTGGTGGTCATTTGGAAGCAGAAACCACGGTATGA...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GGCATCACCGGTGGCACCCCGGAGTTTACAAATGAACTCATCCCAGCACAGTTTCGTCTTCTTCAGACATaGGGTGCTGCCAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: GITGGTPEFTNELIPAQFRLLQT*GAASSL
Trigger: AAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACG...AAACTGTGCTGGGATGAGTTCATTTGTAAACTCCGGGGTGCCACCGGTGATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACCTTCACCGTGGCCTTaGGGACGGTCAAAGTGTACA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLPSPWP*GRSKCT
Trigger: TGTACACTTTGACCGTCCCCAAGGCCACGGTGAAGG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCCGTAAGGCAACTGCATaGGGTCCACATAGATATACT +
Preference number: 4 (lower is better)
Translates to: HLGSTLLGRATCHPGFPPRKATA*GPHRYT
Trigger: AGTATATCTATGTGGACCCCATGCAGTTGCCTTACG...GGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACCACTTCCAGCACTGTaGCAAAGAGGCCACTGTTGT +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLPLPAL*QRGHCC
Trigger: ACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: ALREHTAWQSYLSSRFPSRCKCA*LRSHSH
Trigger: ATGAGAGTGAGATCGAAGGCAGGCACATTTACATCT...GGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp CACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCACATAACTTCTTGTaGTCTCGTCTGCAGGATTCA +
Preference number: 4 (lower is better)
Translates to: HLGSTLLGRATCHPGFPPSHNFL*SRLQDS
Trigger: TGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGA...GGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAACTACGAGATCCAAAATaGATGCAGGAACTAGGGTTG +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQLRDPK*MQELGL
Trigger: CAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAG...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTAGGCATCGAACTGCGATaGTCTCTTCCACTTTGGCGA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLGIELR*SLPLWR
Trigger: TCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCC...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TGTGTATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCCACTTCCAGCACTGTaGCAAAGAGGCCACTGTTGT +
Preference number: 4 (lower is better)
Translates to: CVYTGQAIYHRATSATLRPLPAL*QRGHCC
Trigger: ACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGG...ACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTCAGACATGGGGTGCTaGCAGCTCACTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVSDMGC*QLTSLS
Trigger: GGAGAGTGAAGTGAGCTGGCAGCACCCCATGTCTGA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTAGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGAT +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLAEVVL*QASNCD
Trigger: ATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGC...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATGGGACCTGACTTGGTaGAGGCTCCCAGCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATWDLTW*RLPASS
Trigger: TGAACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCTGGGACCTGACTTGGTaGAGGCTCCCAGCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAWDLTW*RLPASS
Trigger: TGAACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCA...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATTGGGACCTGACTTGGTaGAGGCTCCCAGCAAGTTCA +
Preference number: 4 (lower is better)
Translates to: YTGQAIYHRATSATLRLYWDLTW*RLPASS
Trigger: TGAACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCA...ATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAATCACATAACTTCTTGTaGTCTCGTCTGCAGGATTCA +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQSHNFL*SRLQDS
Trigger: TGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGA...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAACACTGTCCTTCACCGTaGCCTTGGGGACGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKHCPSP*PWGRSK
Trigger: CTTTGACCGTCCCCAAGGCCACGGTGAAGGACAGTG...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTGCGAATTTCATACCGTaGTTTCTGCTTCCAAATGAC +
Preference number: 4 (lower is better)
Translates to: SRALREHTAWQSYLSSRFANFIP*FLLPND
Trigger: GTCATTTGGAAGCAGAAACCACGGTATGAAATTCGC...AAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAACACAATGTTCAAATGTaGCCCCAGGTGAGTCATTAT +
Preference number: 4 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQHNVQM*PQVSHY
Trigger: ATAATGACTCACCTGGGGCCACATTTGAACATTGTG...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCTCGTACAGCGATCTCTaGATGTCAGAGTATTTAGAA +
Preference number: 4 (lower is better)
Translates to: ALREHTAWQSYLSSRFPSSYSDL*MSEYLE
Trigger: TTCTAAATACTCTGACATCCAGAGATCGCTGTACGA...GGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAGCAGCCAGGTCCCGGTaGACACAATTTTTCGAAGCC +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATAARSR*TQFFEA
Trigger: GGCTTCGAAAAATTGTGTCCACCGGGACCTGGCTGC...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCACTTCACTGGTGGCATaGTCAGGTTTGGCCATCCGG +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKATSLVA*SGLAIR
Trigger: CCGGATGGCCAAACCTGACCATGCCACCAGTGAAGT...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACATAGACTTCACTGGTaGCATGGTCAGGTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLHRLHW*HGQVWP
Trigger: TGGCCAAACCTGACCATGCCACCAGTGAAGTCTATG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 72 bp TCAGGTTCTCCCATCCAGGGGGAAGTGGTACCCACGTaGACTAGAATGGGAAGATGTTCCCAAGTCAAGATG +
Preference number: 4 (lower is better)
Translates to: SGSPIQGEVVPT*TRMGRCSQVKM
Trigger: CATCTTGACTTGGGAACATCTTCCCATTCTAGTCAACGTGGGTACCACTTCCCCCTGGATGGGAGAACCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTCCACTTCCAGCACTGTaGCAAAGAGGCCACTGTTGT +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVPLPAL*QRGHCC
Trigger: ACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGG...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAAGTTGGAATCGTGCATaGTGTCTCTGGCCAGGCCAA +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATSWNRA*CLWPGQ
Trigger: TTGGCCTGGCCAGAGACATCATGCACGATTCCAACT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATCTTCAGACATGGGGTaGTGCCAGCTCACTTCACTC +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATSSDMG*CQLTSL
Trigger: GAGTGAAGTGAGCTGGCAGCACCCCATGTCTGAAGA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATCATACCGTGGTTTCTaGTTCCAAATGACCACCAGG +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLSYRGF*FQMTTR
Trigger: CCTGGTGGTCATTTGGAAGCAGAAACCACGGTATGA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATCAGACATGAGAGCCTaGTTTTCACTAGACCTGGCT +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLSDMRA*FSLDLA
Trigger: AGCCAGGTCTAGTGAAAAGCAGGCTCTCATGTCTGA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATGTGTCTGTTCCTCTTaGCCAGGTCTTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATCVCSS*PGLPPL
Trigger: CAGAGGAGGAAGACCTGGGCAAGAGGAACAGACACA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCTGTGTCTGTTCCTCTTaGCCAGGTCTTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKACVCSS*PGLPPL
Trigger: CAGAGGAGGAAGACCTGGGCAAGAGGAACAGACACA...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCTTGACAGCTTCCAGCTaGCCAAAGGTGGGCTCAATC +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALTASS*PKVGSI
Trigger: GATTGAGCCCACCTTTGGCCAGCTGGAAGCTGTCAA...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAGGCATCGAACTGCGATaGTCTCTTCCACTTTGGCGA +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATGIELR*SLPLWR
Trigger: TCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCC...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCAACAGGGTCAATGTCTaGCAGGGGGATGATGTAGCC +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKANRVNV*QGDDVA
Trigger: GGCTACATCATCCCCCTGCCAGACATTGACCCTGTT...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTCAGGTCTTCCTCCTCTaGAACAGGGTCAATGTCTGG +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVQVFLL*NRVNVW
Trigger: CCAGACATTGACCCTGTTCCAGAGGAGGAAGACCTG...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp GGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTGATGTAAATGGGACCTaGCTTGGTGCAGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: GYISNPASLFFSHIEHKSDVNGT*LGAGSQ
Trigger: CTGGGAGCCTGCACCAAGTCAGGTCCCATTTACATC...AGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACTCTTCCGAAGTCTGTaGGCTGTGTCTGTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATLFRSL*AVSVPL
Trigger: AAGAGGAACAGACACAGCTCACAGACTTCGGAAGAG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAATCAGACATGGGGTGCTaGCAGCTCACTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: IGLHQQPCVFILLTHRAQSDMGC*QLTSLS
Trigger: GGAGAGTGAAGTGAGCTGGCAGCACCCCATGTCTGA...TTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp CACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTTACATTTCTTAATATaGTTGCAGATCATCCAGTCG +
Preference number: 4 (lower is better)
Translates to: HLGSTLLGRATCHPGFPPLHFLI*LQIIQS
Trigger: CGACTGGATGATCTGCAAGCATATTAAGAAATGTAA...GGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTT +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVCQASN*DGLFHF
Trigger: AAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATTGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTT +
Preference number: 4 (lower is better)
Translates to: YTGQAIYHRATSATLRLYCQASN*DGLFHF
Trigger: AAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCA...ATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAACGTCTTCTTCAGACATaGGGTGCTGCCAGCTCACTT +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKRLLQT*GAASSL
Trigger: AAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACG...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACACAAAGGCCATGTCTaGGTCTGGTACATAGATGTA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLHKGHV*VWYIDV
Trigger: TACATCTATGTACCAGACCCAGACATGGCCTTTGTG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACTACGAGATCCAAAATaGATGCAGGAACTAGGGTTG +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLLRDPK*MQELGL
Trigger: CAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGCATCACCGGTGGCACCCCGGAGTTTACAAATGAACTCATCCCAGCACAGTTTTATTTGAGACATTGCTaGCCAAAACTGTCCACGAAG +
Preference number: 4 (lower is better)
Translates to: GITGGTPEFTNELIPAQFYLRHC*PKLSTK
Trigger: CTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATA...AAACTGTGCTGGGATGAGTTCATTTGTAAACTCCGGGGTGCCACCGGTGATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAAGACGTCACTCAGCGTaGTGTAGAGGTTGTCGAAGA +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATRRHSA*CRGCRR
Trigger: TCTTCGACAACCTCTACACCACGCTGAGTGACGTCT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCATAGACTTCACTGGTaGCATGGTCAGGTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAHRLHW*HGQVWP
Trigger: TGGCCAAACCTGACCATGCCACCAGTGAAGTCTATG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTGGAACCTGTCTCGATaGCACTCTCTTCCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVWNLSR*HSLPKS
Trigger: AGACTTCGGAAGAGAGTGCCATCGAGACAGGTTCCA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTATCCATCGGGGCTGATTaGCTCGATAACCCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVSIGAD*LDNPPA
Trigger: CGCTGGAGGGTTATCGAGTCAATCAGCCCCGATGGA...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACATCCATCGGGGCTGATTaGCTCGATAACCCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: YISNPASLFFSHIEHKSTSIGAD*LDNPPA
Trigger: CGCTGGAGGGTTATCGAGTCAATCAGCCCCGATGGA...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATCCAGCACTGCACCATaGTCTCATAGACTTCACTGG +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKSSTAP*SHRLHW
Trigger: CCAGTGAAGTCTATGAGATCATGGTGCAGTGCTGGA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTT +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKCQASN*DGLFHF
Trigger: AAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGAT +
Preference number: 4 (lower is better)
Translates to: GKQYTIGLHQQPCVFILLAEVVL*QASNCD
Trigger: ATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGC...GAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTCAGACATGAGAGCCTaGTTTTCACTAGACCTGGCT +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVSDMRA*FSLDLA
Trigger: AGCCAGGTCTAGTGAAAAGCAGGCTCTCATGTCTGA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATCACATAACTTCTTGTaGTCTCGTCTGCAGGATTCA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLSHNFL*SRLQDS
Trigger: TGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACACACTGTCCTTCACCGTaGCCTTGGGGACGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: YISNPASLFFSHIEHKSTHCPSP*PWGRSK
Trigger: CTTTGACCGTCCCCAAGGCCACGGTGAAGGACAGTG...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTC +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVTKPFS*TEMVTL
Trigger: GAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGT...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAATTGACAGCTTCCAGCTaGCCAAAGGTGGGCTCAATC +
Preference number: 4 (lower is better)
Translates to: IGLHQQPCVFILLTHRAQLTASS*PKVGSI
Trigger: GATTGAGCCCACCTTTGGCCAGCTGGAAGCTGTCAA...TTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTAGCGAATTTCATACCGTaGTTTCTGCTTCCAAATGAC +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLANFIP*FLLPND
Trigger: GTCATTTGGAAGCAGAAACCACGGTATGAAATTCGC...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAAGGCTTCTCTGGGTGTTaGCTCATGAAGCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKGFSGC*LMKLSL
Trigger: CAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCC...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCT +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATFLRLL*VLAHEA
Trigger: AGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACTTCTGAGTCTAGCATaGATTTCTTCTTGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLLLSLA*ISSCRR
Trigger: CCTCCTACAAGAAGAAATCCATGCTAGACTCAGAAG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAAAAATGTGGCCCCAGGTaGGTCATTATCTTCAGCTCA +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKKCGPR*VIIFSS
Trigger: TGAGCTGAAGATAATGACTCACCTGGGGCCACATTT...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAGATGTAAATGGGACCTaGCTTGGTGCAGGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVDVNGT*LGAGSQ
Trigger: CTGGGAGCCTGCACCAAGTCAGGTCCCATTTACATC...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCGAGCAACTTGATAGGTaGAGCTCAATAGATCCAGCA +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAEQLDR*SSIDPA
Trigger: TGCTGGATCTATTGAGCTTCACCTATCAAGTTGCTC...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTATCAGACATGGGGTGCTaGCAGCTCACTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVSDMGC*QLTSLS
Trigger: GGAGAGTGAAGTGAGCTGGCAGCACCCCATGTCTGA...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATCATACCGTGGTTTCTaGTTCCAAATGACCACCAGG +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKSYRGF*FQMTTR
Trigger: CCTGGTGGTCATTTGGAAGCAGAAACCACGGTATGA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTGGCCATGTCTGGGTCTaGTACATAGATGTAAATGTG +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVGHVWV*YIDVNV
Trigger: CACATTTACATCTATGTACCAGACCCAGACATGGCC...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACCTTCACCGTGGCCTTaGGGACGGTCAAAGTGTACA +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVPSPWP*GRSKCT
Trigger: TGTACACTTTGACCGTCCCCAAGGCCACGGTGAAGG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTACACTGTCCTTCACCGTaGCCTTGGGGACGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: QPCVFILLTHRAQIYKKLHCPSP*PWGRSK
Trigger: CTTTGACCGTCCCCAAGGCCACGGTGAAGGACAGTG...TAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCT +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKFLRLL*VLAHEA
Trigger: AGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATCGTACAGCGATCTCTaGATGTCAGAGTATTTAGAA +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLSYSDL*MSEYLE
Trigger: TTCTAAATACTCTGACATCCAGAGATCGCTGTACGA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAACCTCTTTAGTGGCCTaGCGGGCAGCACATTCATAC +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVTSLVA*RAAHSY
Trigger: GTATGAATGTGCTGCCCGTCAGGCCACTAAAGAGGT...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTCTTATGCAAGTAGTTaGCCAAATCCCCATAGAAGC +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVSYASS*PNPHRS
Trigger: GCTTCTATGGGGATTTGGTCAACTACTTGCATAAGA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTAGGATCAGCTTTAATTTaGTCTGATACCTTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLGSALI*SDTLFP
Trigger: AGGAAACAAGGTATCAGAGCAAATTAAAGCTGATCC...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCTCACATAACTTCTTGTaGTCTCGTCTGCAGGATTCA +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKASHNFL*SRLQDS
Trigger: TGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGA...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTCAGAAAGATCATATTTaGCAGAATGAGCATGGGCAC +
Preference number: 4 (lower is better)
Translates to: YTPGKQYTIGLHQQPCVFQKDHI*QNEHGH
Trigger: GTGCCCATGCTCATTCTGGCAAATATGATCTTTCTG...AAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCACCACTCCTTCACCGTGGCCTTaGGGACGGTCAAAGTGTACA +
Preference number: 4 (lower is better)
Translates to: VRLPTFRLAIEKTPIITTPSPWP*GRSKCT
Trigger: TGTACACTTTGACCGTCCCCAAGGCCACGGTGAAGG...AGTGGTGATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CCA 90 bp CAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTACCTTCACCGTGGCCTTaGGGACGGTCAAAGTGTACA +
Preference number: 4 (lower is better)
Translates to: QPCVFILLTHRAQIYKKLPSPWP*GRSKCT
Trigger: TGTACACTTTGACCGTCCCCAAGGCCACGGTGAAGG...TAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTATTTGAGACATTGCTaGCCAAAACTGTCCACGAAG +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVYLRHC*PKLSTK
Trigger: CTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATATTTGAGACATTGCTaGCCAAAACTGTCCACGAAG +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATYLRHC*PKLSTK
Trigger: CTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAGGCATCGAACTGCGATaGTCTCTTCCACTTTGGCGA +
Preference number: 4 (lower is better)
Translates to: YISNPASLFFSHIEHKSTGIELR*SLPLWR
Trigger: TCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCC...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCGCGAATTTCATACCGTaGTTTCTGCTTCCAAATGAC +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAANFIP*FLLPND
Trigger: GTCATTTGGAAGCAGAAACCACGGTATGAAATTCGC...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCACAATGTTCAAATGTaGCCCCAGGTGAGTCATTAT +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAHNVQM*PQVSHY
Trigger: ATAATGACTCACCTGGGGCCACATTTGAACATTGTG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACTTTCCTTTCAAGCATaGGGACATACTGTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: WSEKYHPTSWCHARPKATLSFQA*GHTVWY
Trigger: ATACCACACAGTATGTCCCCATGCTTGAAAGGAAAG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACAGGTCTTCCTCCTCTaGAACAGGGTCAATGTCTGG +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVQVFLL*NRVNVW
Trigger: CCAGACATTGACCCTGTTCCAGAGGAGGAAGACCTG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 72 bp GTAATTCCAAATCTCTGGGGCAAAGGTCTGACACCATaGAGGCTAGTAACTGTAGCTGTAGTTAATGGTGGG +
Preference number: 4 (lower is better)
Translates to: VIPNLWGKGLTP*RLVTVAVVNGG
Trigger: CCCACCATTAACTACAGCTACAGTTACTAGCCTCAATGGTGTCAGACCTTTGCCCCAGAGATTTGGAATTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 72 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTaGACTTCTAGCCCCGTTCCAAATTTCAAAGTTGCC +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAW*TSSPVPNFKVA
Trigger: GGCAACTTTGAAATTTGGAACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTACCACTTCCAGCACTGTaGCAAAGAGGCCACTGTTGT +
Preference number: 4 (lower is better)
Translates to: QPCVFILLTHRAQIYKKLPLPAL*QRGHCC
Trigger: ACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGG...TAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCTCTGTGATAATATTTaGGACATTGCTGGCCAAAAC +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALCDNI*DIAGQN
Trigger: GTTTTGGCCAGCAATGTCTCAAATATTATCACAGAG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp TATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTCTCTGTGATAATATTTaGGACATTGCTGGCCAAAAC +
Preference number: 4 (lower is better)
Translates to: YTPGKQYTIGLHQQPCVFLCDNI*DIAGQN
Trigger: GTTTTGGCCAGCAATGTCTCAAATATTATCACAGAG...AAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATCCATCGGGGCTGATTaGCTCGATAACCCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQSIGAD*LDNPPA
Trigger: CGCTGGAGGGTTATCGAGTCAATCAGCCCCGATGGA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAAAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKRCKCA*LRSHSH
Trigger: ATGAGAGTGAGATCGAAGGCAGGCACATTTACATCT...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGAT +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVAEVVL*QASNCD
Trigger: ATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGC...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp ATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAACACAAAGGCCATGTCTaGGTCTGGTACATAGATGTA +
Preference number: 4 (lower is better)
Translates to: IGLHQQPCVFILLTHRAQHKGHV*VWYIDV
Trigger: TACATCTATGTACCAGACCCAGACATGGCCTTTGTG...TTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAACACTGTCCTTCACCGTaGCCTTGGGGACGGTCAAAG +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQHCPSP*PWGRSK
Trigger: CTTTGACCGTCCCCAAGGCCACGGTGAAGGACAGTG...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCCACAATGTTCAAATGTaGCCCCAGGTGAGTCATTAT +
Preference number: 4 (lower is better)
Translates to: GKQYTIGLHQQPCVFILLHNVQM*PQVSHY
Trigger: ATAATGACTCACCTGGGGCCACATTTGAACATTGTG...GAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp ATACTGCAACCTCAAACTGTCTGCTCTCCAGTTAGTGTCACAACATGTACATTAGGCTTCTCTGGGTGTTaGCTCATGAAGCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: ILQPQTVCSPVSVTTCTLGFSGC*LMKLSL
Trigger: CAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCC...TAATGTACATGTTGTGACACTAACTGGAGAGCAGACAGTTTGAGGTTGCAGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTCGTACAGCGATCTCTaGATGTCAGAGTATTTAGAA +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVSYSDL*MSEYLE
Trigger: TTCTAAATACTCTGACATCCAGAGATCGCTGTACGA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
3UTR CAA 72 bp CGGTTAAGAGTTATTTACATAATTACAATGCTGGAGTaGTCTGCAGTACAAGTTGGCGCGTGTGGGACTCTC +
Preference number: 4 (lower is better)
Translates to: RLRVIYIITMLE*SAVQVGACGTL
Trigger: GAGAGTCCCACACGCGCCAACTTGTACTGCAGACAACTCCAGCATTGTAATTATGTAAATAACTCTTAACCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAACTCTGTGATAATATTTaGGACATTGCTGGCCAAAAC +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKLCDNI*DIAGQN
Trigger: GTTTTGGCCAGCAATGTCTCAAATATTATCACAGAG...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACCGAAAGGAGGTTTTTaGCTTCTGAGTCTAGCATGG +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVPKGGF*LLSLAW
Trigger: CCATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCGGATCAGCTTTAATTTaGTCTGATACCTTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAGSALI*SDTLFP
Trigger: AGGAAACAAGGTATCAGAGCAAATTAAAGCTGATCC...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp GGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTGCGAATTTCATACCGTaGTTTCTGCTTCCAAATGAC +
Preference number: 4 (lower is better)
Translates to: GYISNPASLFFSHIEHKSANFIP*FLLPND
Trigger: GTCATTTGGAAGCAGAAACCACGGTATGAAATTCGC...AGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp GTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCACCACTAAATGTGGCCCCAGGTaGGTCATTATCTTCAGCTCA +
Preference number: 4 (lower is better)
Translates to: VRLPTFRLAIEKTPIITTKCGPR*VIIFSS
Trigger: TGAGCTGAAGATAATGACTCACCTGGGGCCACATTT...AGTGGTGATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR TCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAAGTTGGAATCGTGCATaGTGTCTCTGGCCAGGCCAA +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQSWNRA*CLWPGQ
Trigger: TTGGCCTGGCCAGAGACATCATGCACGATTCCAACT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp GGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCGGATCAGCTTTAATTTaGTCTGATACCTTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: GKQYTIGLHQQPCVFILLGSALI*SDTLFP
Trigger: AGGAAACAAGGTATCAGAGCAAATTAAAGCTGATCC...GAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTTTACATTTCTTAATATaGTTGCAGATCATCCAGTCG +
Preference number: 4 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVLHFLI*LQIIQS
Trigger: CGACTGGATGATCTGCAAGCATATTAAGAAATGTAA...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp TATACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTTTACATTTCTTAATATaGTTGCAGATCATCCAGTCG +
Preference number: 4 (lower is better)
Translates to: YTPGKQYTIGLHQQPCVFLHFLI*LQIIQS
Trigger: CGACTGGATGATCTGCAAGCATATTAAGAAATGTAA...AAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACACAAAGGCCATGTCTaGGTCTGGTACATAGATGTA +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVHKGHV*VWYIDV
Trigger: TACATCTATGTACCAGACCCAGACATGGCCTTTGTG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATTGACAGCTTCCAGCTaGCCAAAGGTGGGCTCAATC +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQLTASS*PKVGSI
Trigger: GATTGAGCCCACCTTTGGCCAGCTGGAAGCTGTCAA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTACGAGATCCAAAATaGATGCAGGAACTAGGGTTG +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVLRDPK*MQELGL
Trigger: CAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACGTAAGGCAACTGCATaGGGTCCACATAGATATACT +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVRKATA*GPHRYT
Trigger: AGTATATCTATGTGGACCCCATGCAGTTGCCTTACG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAAAATGGGACCTGACTTaGTGCAGGCTCCCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQKWDLT*CRLPAS
Trigger: ACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCATTT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp AACAATGTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCAAATGGGACCTGACTTaGTGCAGGCTCCCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: NNVRLPTFRLAIEKTPIIKWDLT*CRLPAS
Trigger: ACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCATTT...GATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTACATTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTGGCTTCTCTGGGTGTTaGCTCATGAAGCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLGFSGC*LMKLSL
Trigger: CAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCC...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCT +
Preference number: 4 (lower is better)
Translates to: QPCVFILLTHRAQIYKKLFLRLL*VLAHEA
Trigger: AGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAA...TAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATGGCATGGTCAGGTTTaGCCATCCGGTATCCACTCT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQWHGQV*PSGIHS
Trigger: AGAGTGGATACCGGATGGCCAAACCTGACCATGCCA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAAACAGGGTCAATGTCTaGCAGGGGGATGATGTAGCC +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQNRVNV*QGDDVA
Trigger: GGCTACATCATCCCCCTGCCAGACATTGACCCTGTT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCAT +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVRCKCA*LRSHSH
Trigger: ATGAGAGTGAGATCGAAGGCAGGCACATTTACATCT...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATTACATTTCTTAATATaGTTGCAGATCATCCAGTCG +
Preference number: 4 (lower is better)
Translates to: HHCGLRVCSSFSSETREKLHFLI*LQIIQS
Trigger: CGACTGGATGATCTGCAAGCATATTAAGAAATGTAA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTTCATACCGTGGTTTCTaGTTCCAAATGACCACCAGG +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLSYRGF*FQMTTR
Trigger: CCTGGTGGTCATTTGGAAGCAGAAACCACGGTATGA...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTCACAAAGGCCATGTCTaGGTCTGGTACATAGATGTA +
Preference number: 4 (lower is better)
Translates to: PCVFILLTHRAQIYKKLSHKGHV*VWYIDV
Trigger: TACATCTATGTACCAGACCCAGACATGGCCTTTGTG...AGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTC +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLTKPFS*TEMVTL
Trigger: GAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGT...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTCTACGAGATCCAAAATaGATGCAGGAACTAGGGTTG +
Preference number: 4 (lower is better)
Translates to: PCVFILLTHRAQIYKKLSLRDPK*MQELGL
Trigger: CAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAG...AGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACATATTTGAGACATTGCTaGCCAAAACTGTCCACGAAG +
Preference number: 4 (lower is better)
Translates to: YISNPASLFFSHIEHKSTYLRHC*PKLSTK
Trigger: CTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATA...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTACGTAAGGCAACTGCATaGGGTCCACATAGATATACT +
Preference number: 4 (lower is better)
Translates to: QPCVFILLTHRAQIYKKLRKATA*GPHRYT
Trigger: AGTATATCTATGTGGACCCCATGCAGTTGCCTTACG...TAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTTCCTTTCAAGCATaGGGACATACTGTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVLSFQA*GHTVWY
Trigger: ATACCACACAGTATGTCCCCATGCTTGAAAGGAAAG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACACTTTCCTTTCAAGCATaGGGACATACTGTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: YISNPASLFFSHIEHKSTLSFQA*GHTVWY
Trigger: ATACCACACAGTATGTCCCCATGCTTGAAAGGAAAG...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATGGAACCTGTCTCGATaGCACTCTCTTCCGAAGTCT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQWNLSR*HSLPKS
Trigger: AGACTTCGGAAGAGAGTGCCATCGAGACAGGTTCCA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAAAATGTGGCCCCAGGTaGGTCATTATCTTCAGCTCA +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQKCGPR*VIIFSS
Trigger: TGAGCTGAAGATAATGACTCACCTGGGGCCACATTT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTCATATTTGCCAGAATaGGCATGGGCACTTTTACCT +
Preference number: 4 (lower is better)
Translates to: PCVFILLTHRAQIYKKLSSYLPE*AWALLP
Trigger: AGGTAAAAGTGCCCATGCTCATTCTGGCAAATATGA...AGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR GCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATGCCAGGATAGGGTGTaGCACCAAGGGAAAAGATTT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQCQDRV*HQGKRF
Trigger: AAATCTTTTCCCTTGGTGGCACACCCTATCCTGGCA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTC +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQTKPFS*TEMVTL
Trigger: GAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGT...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR TCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTTCTTATGCAAGTAGTTaGCCAAATCCCCATAGAAGC +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLSYASS*PNPHRS
Trigger: GCTTCTATGGGGATTTGGTCAACTACTTGCATAAGA...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTTCATATTTGCCAGAATaGGCATGGGCACTTTTACCT +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLSYLPE*AWALLP
Trigger: AGGTAAAAGTGCCCATGCTCATTCTGGCAAATATGA...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAACGTAAGGCAACTGCATaGGGTCCACATAGATATACT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQRKATA*GPHRYT
Trigger: AGTATATCTATGTGGACCCCATGCAGTTGCCTTACG...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTCTTTCCTTTCAAGCATaGGGACATACTGTGTGGTAT +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLLSFQA*GHTVWY
Trigger: ATACCACACAGTATGTCCCCATGCTTGAAAGGAAAG...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR TCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAATCTTATGCAAGTAGTTaGCCAAATCCCCATAGAAGC +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQSYASS*PNPHRS
Trigger: GCTTCTATGGGGATTTGGTCAACTACTTGCATAAGA...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAACACAATGTTCAAATGTaGCCCCAGGTGAGTCATTAT +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQHNVQM*PQVSHY
Trigger: ATAATGACTCACCTGGGGCCACATTTGAACATTGTG...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CCA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAACTTCTGAGTCTAGCATaGATTTCTTCTTGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQLLSLA*ISSCRR
Trigger: CCTCCTACAAGAAGAAATCCATGCTAGACTCAGAAG...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR GCA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTGGATCAGCTTTAATTTaGTCTGATACCTTGTTTCCT +
Preference number: 4 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLGSALI*SDTLFP
Trigger: AGGAAACAAGGTATCAGAGCAAATTAAAGCTGATCC...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCCGGCTTCTCTGGGTGTaGGCTCATGAAGCTATCTCT +
Preference number: 5 (lower is better)
Translates to: WPSCAAVHLGSTLLGRATRLLWV*AHEAIS
Trigger: AGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCG...GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 90 bp GGTTGTTCTTTGCCAGGCATCGAACTGCGATGGTCTCTTCCACTTTaGCGAAGGACACTCGTCCCTCCACGGTACTCCTGCCACGGCGAG +
Preference number: 5 (lower is better)
Translates to: GCSLPGIELRWSLPL*RRTLVPPRYSCHGE
Trigger: CTCGCCGTGGCAGGAGTACCGTGGAGGGACGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp GCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGCTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGAC +
Preference number: 5 (lower is better)
Translates to: AQLRSRALREHTAWQSYLLLIST*GSSSSD
Trigger: GTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAG...CAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS TCA 90 bp ATCGCAGAGTGGGAGCCACCAGCTTCAGCTCACGGGCCACAACGCTaGGGTTGTTCTTTGCCAGGCATCGAACTGCGATGGTCTCTTCCA +
Preference number: 5 (lower is better)
Translates to: IAEWEPPASAHGPQR*GCSLPGIELRWSLP
Trigger: TGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAGCTGGTGGCTCCCACTCTGCGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 90 bp CTCACGGGCCACAACGCTGAGGTTGTTCTTTGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTTGGCGAAGGACACTCGTCCCTCCAC +
Preference number: 5 (lower is better)
Translates to: LTGHNAEVVLCQASN*DGLFHFGEGHSSLH
Trigger: GTGGAGGGACGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TGGCCCAGCTGCGCAGCCGTGCACTTAGGGAGCACACTGCTTGGCAGAGCTACCCTGTGTGGTATCAGCTaGCTTCATGTCCATGTAGTC +
Preference number: 5 (lower is better)
Translates to: WPSCAAVHLGSTLLGRATLCGIS*LHVHVV
Trigger: GACTACATGGACATGAAGCAAGCTGATACCACACAG...GGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGCACGGCTGCGCAGCTGGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 90 bp AGCCACCAGCTTCAGCTCACGGGCCACAACGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGATGGTCTCTTCCACTTTGGCGAAGGA +
Preference number: 5 (lower is better)
Translates to: SHQLQLTGHNAEVVL*QASNCDGLFHFGEG
Trigger: TCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAGCTGGTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 90 bp CAGGACGATGAGAGAGACAATGACAATCACCAACAGCACCAACACTaGGGCCGCCACTGTGAGTTCAGATCGCAGAGTGGGAGCCACCAG +
Preference number: 5 (lower is better)
Translates to: QDDERDNDNHQQHQH*GRHCEFRSQSGSHQ
Trigger: CTGGTGGCTCCCACTCTGCGATCTGAACTCACAGTGGCGGCCGCAGTGTTGGTGCTGTTGGTGATTGTCATTGTCTCTCTCATCGTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAATTGAACGTCCTCCCTTaGACGGTGGCCTCACAGATG +
Preference number: 5 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQLNVLP*TVASQM
Trigger: CATCTGTGAGGCCACCGTCAAAGGGAGGACGTTCAA...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTG +
Preference number: 5 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVLMDGS*ISSSMV
Trigger: CACCATGCTGGAGGAGATCAAACTCCCATCCATCAA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS GCA 90 bp CGTCTGAGTGTGGTTGTAGTAGCAAGTGTACCATCCGGTGTGGGCTaGGGAGGCGTTAACCACTTCCAGCACTGTGACAAAGAGGCCACT +
Preference number: 5 (lower is better)
Translates to: RLSVVVVASVPSGVG*GGVNHFQHCDKEAT
Trigger: AGTGGCCTCTTTGTCACAGTGCTGGAAGTGGTTAACGCCTCCGCAGCCCACACCGGATGGTACACTTGCTACTACAACCACACTCAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 90 bp CCTTCGGCTGTACACCTCACAGTCTGTCCCCCGCCAGAGCCATGGTaGTCATCTACGAGATCCAAAATGGATGCAGGAACTAGGGTTGAC +
Preference number: 5 (lower is better)
Translates to: PSAVHLTVCPPPEPW*SSTRSKMDAGTRVD
Trigger: GTCAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCGGGGGACAGACTGTGAGGTGTACAGCCGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 90 bp GTGCCTTCGGCTGTACACCTCACAGTCTGTCCCCCGCCAGAGCCATaGTGGTCATCTACGAGATCCAAAATGGATGCAGGAACTAGGGTT +
Preference number: 5 (lower is better)
Translates to: VPSAVHLTVCPPPEP*WSSTRSKMDAGTRV
Trigger: AACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCGGGGGACAGACTGTGAGGTGTACAGCCGAAGGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp GCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGAC +
Preference number: 5 (lower is better)
Translates to: ALREHTAWQSYLSSRFPSLLIST*GSSSSD
Trigger: GTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAG...GGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 90 bp TCCACCACGAACTCTCTGACTTCGTGCAAGTTGACAGCTTCCAGCTaGCCAAAGGTGGGCTCAATCTCGACGAAGCCTTTCTCGTGGACA +
Preference number: 5 (lower is better)
Translates to: STTNSLTSCKLTASS*PKVGSISTKPFSWT
Trigger: TGTCCACGAGAAAGGCTTCGTCGAGATTGAGCCCACCTTTGGCCAGCTGGAAGCTGTCAACTTGCACGAAGTCAGAGAGTTCGTGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATCCTTCACCGTGGCCTaGGGGACGGTCAAAGTGTAC +
Preference number: 5 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLSFTVA*GTVKVY
Trigger: GTACACTTTGACCGTCCCCAAGGCCACGGTGAAGGA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp CCCGGACACACTTTGAGGCGAGCAAGCTCAGGTTCTCCCATCCAGGGGGAAGTGTCCGAAAGGAGGTTTTaGACTTCTGAGTCTAGCATG +
Preference number: 5 (lower is better)
Translates to: PGHTLRRASSGSPIQGEVSERRF*TSESSM
Trigger: CATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGGA...CACTTCCCCCTGGATGGGAGAACCTGAGCTTGCTCGCCTCAAAGTGTGTCCGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATTGAACGTCCTCCCTTaGACGGTGGCCTCACAGATG +
Preference number: 5 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLLNVLP*TVASQM
Trigger: CATCTGTGAGGCCACCGTCAAAGGGAGGACGTTCAA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTACTTCACAATTTTTCCTaGCGCCAGGAGGACGTTGCG +
Preference number: 5 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLLHNFS*RQEDVA
Trigger: CGCAACGTCCTCCTGGCGCAAGGAAAAATTGTGAAG...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCGTGGCATGGTCAGGTTaGGCCATCCGGTATCCACTC +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAVAWSG*AIRYPL
Trigger: GAGTGGATACCGGATGGCCAAACCTGACCATGCCAC...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS CCA 90 bp CACCGTGGCCTTGGGGACGGTCAAAGTGTACACCAGTTTGATGGATaGGAGTTTGATCTCCTCCAGCATGGTGATACCTTTGTTTCTCAC +
Preference number: 5 (lower is better)
Translates to: HRGLGDGQSVHQFDG*EFDLLQHGDTFVSH
Trigger: GTGAGAAACAAAGGTATCACCATGCTGGAGGAGATCAAACTCCCATCCATCAAACTGGTGTACACTTTGACCGTCCCCAAGGCCACGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 90 bp TCTGTCCCCCGCCAGAGCCATGGTGGTCATCTACGAGATCCAAAATaGATGCAGGAACTAGGGTTGACAGCTCAAACGTGTAACTCTTCA +
Preference number: 5 (lower is better)
Translates to: SVPRQSHGGHLRDPK*MQELGLTAQTCNSS
Trigger: TGAAGAGTTACACGTTTGAGCTGTCAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCGGGGGACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCTTGAACGTCCTCCCTTaGACGGTGGCCTCACAGATG +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALNVLP*TVASQM
Trigger: CATCTGTGAGGCCACCGTCAAAGGGAGGACGTTCAA...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTATTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTG +
Preference number: 5 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLLMDGS*ISSSMV
Trigger: CACCATGCTGGAGGAGATCAAACTCCCATCCATCAA...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCTCTGAGCAGCAAAAAGTGTACACCAGTTaGATGGATGGGAGTTTGATC +
Preference number: 5 (lower is better)
Translates to: TLLGRATCHPGFPPSEQQKVYTS*MDGSLI
Trigger: GATCAAACTCCCATCCATCAAACTGGTGTACACTTT...TTGCTGCTCAGAGGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp CACCATTGTGGTCTCAGGGTTTGCAGTTCTTTCTCGTCTGAGACAAGAGAGAAATCCTTCACCGTGGCCTaGGGGACGGTCAAAGTGTAC +
Preference number: 5 (lower is better)
Translates to: HHCGLRVCSSFSSETREKSFTVA*GTVKVY
Trigger: GTACACTTTGACCGTCCCCAAGGCCACGGTGAAGGA...TTTCTCTCTTGTCTCAGACGAGAAAGAACTGCAAACCCTGAGACCACAATGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCTGACTTCGTGCAAGTaGACAGCTTCCAGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALTSCK*TASSWP
Trigger: TGGCCAGCTGGAAGCTGTCAACTTGCACGAAGTCAG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACTGACTTCGTGCAAGTaGACAGCTTCCAGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATLTSCK*TASSWP
Trigger: TGGCCAGCTGGAAGCTGTCAACTTGCACGAAGTCAG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GCACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCATTTGCTCTGATACCTaGTTTCCTGACTCTTCTGTA +
Preference number: 5 (lower is better)
Translates to: ALREHTAWQSYLSSRFPSICSDT*FPDSSV
Trigger: TACAGAAGAGTCAGGAAACAAGGTATCAGAGCAAAT...GGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp CACTTAGGGAGCACACTGCTTGGCAGAGCTACCTGTCATCCCGGTTTCCCTCCCATAATATTTGAGACATaGCTGGCCAAAACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: HLGSTLLGRATCHPGFPPIIFET*LAKTVH
Trigger: GTGGACAGTTTTGGCCAGCAATGTCTCAAATATTAT...GGGAGGGAAACCGGGATGACAGGTAGCTCTGCCAAGCAGTGTGCTCCCTAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 90 bp GCACAAAGGCCATGTCTGGGTCTGGTACATAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCATCCGTCTGAGTGTGGTTGTAGTAGC +
Preference number: 5 (lower is better)
Translates to: AQRPCLGLVHRCKCA*LRSHSHPSECGCSS
Trigger: GCTACTACAACCACACTCAGACGGATGAGAGTGAGATCGAAGGCAGGCACATTTACATCTATGTACCAGACCCAGACATGGCCTTTGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 90 bp TCCAGCTGGCCAAAGGTGGGCTCAATCTCGACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTCTTCATTTCCTTGACCTCTTTAGTG +
Preference number: 5 (lower is better)
Translates to: SSWPKVGSISTKPFS*TEMVTLFISLTSLV
Trigger: CACTAAAGAGGTCAAGGAAATGAAGAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGTCGAGATTGAGCCCACCTTTGGCCAGCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 90 bp GTTTCCATACTTCTTAATATGCTTGCAGATCATCCAGTCGATTTCTaGAAGAGGGGTGCCTTCGGCTGTACACCTCACAGTCTGTCCCCC +
Preference number: 5 (lower is better)
Translates to: VSILLNMLADHPVDF*KRGAFGCTPHSLSP
Trigger: GGGGGACAGACTGTGAGGTGTACAGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS-3UTR CAA 90 bp ACAGGAACACTTGTCAGATACTGCAACCTCAAACTGTCTGCTCTCCAGTTAGTGTTGAACGTCCTCCCTTaGACGGTGGCCTCACAGATG +
Preference number: 5 (lower is better)
Translates to: TGTLVRYCNLKLSALQLVLNVLP*TVASQM
Trigger: CATCTGTGAGGCCACCGTCAAAGGGAGGACGTTCAA...CACTAACTGGAGAGCAGACAGTTTGAGGTTGCAGTATCTGACAAGTGTTCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CAA 90 bp GGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTTCCTTCACCGTGGCCTaGGGGACGGTCAAAGTGTAC +
Preference number: 5 (lower is better)
Translates to: GYISNPASLFFSHIEHKSSFTVA*GTVKVY
Trigger: GTACACTTTGACCGTCCCCAAGGCCACGGTGAAGGA...AGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACACGGCTTCTCTGGGTGTaGGCTCATGAAGCTATCTCT +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATRLLWV*AHEAIS
Trigger: AGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCG...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCGGCTTCTCTGGGTGTaGGCTCATGAAGCTATCTCT +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKARLLWV*AHEAIS
Trigger: AGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATCGGCTTCTCTGGGTGTaGGCTCATGAAGCTATCTCT +
Preference number: 5 (lower is better)
Translates to: YTGQAIYHRATSATLRLYRLLWV*AHEAIS
Trigger: AGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCG...ATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCTTCACAATTTTTCCTaGCGCCAGGAGGACGTTGCG +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALHNFS*RQEDVA
Trigger: CGCAACGTCCTCCTGGCGCAAGGAAAAATTGTGAAG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS TCA 90 bp CTCCACGGTACTCCTGCCACGGCGAGGGAGCTCTGTGATAATATTTaGGACATTGCTGGCCAAAACTGTCCACGAAGTGTCATTATTACA +
Preference number: 5 (lower is better)
Translates to: LHGTPATARELCDNI*DIAGQNCPRSVIIT
Trigger: TGTAATAATGACACTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATATTATCACAGAGCTCCCTCGCCGTGGCAGGAGTACCGTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTCTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGAC +
Preference number: 5 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVLLIST*GSSSSD
Trigger: GTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAG...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCGTCTCGTCCTCTCTCTaGATGAAGGTGGAACTACTG +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAVSSSL*MKVELL
Trigger: CAGTAGTTCCACCTTCATCAAGAGAGAGGACGAGAC...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAGTCTCGTCCTCTCTCTaGATGAAGGTGGAACTACTG +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATVSSSL*MKVELL
Trigger: CAGTAGTTCCACCTTCATCAAGAGAGAGGACGAGAC...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCCTGTGTGGTATCAGCTaGCTTCATGTCCATGTAGTC +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKALCGIS*LHVHVV
Trigger: GACTACATGGACATGAAGCAAGCTGATACCACACAG...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATCTGTGTGGTATCAGCTaGCTTCATGTCCATGTAGTC +
Preference number: 5 (lower is better)
Translates to: YTGQAIYHRATSATLRLYLCGIS*LHVHVV
Trigger: GACTACATGGACATGAAGCAAGCTGATACCACACAG...ATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAGTGGCATGGTCAGGTTaGGCCATCCGGTATCCACTC +
Preference number: 5 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVVAWSG*AIRYPL
Trigger: GAGTGGATACCGGATGGCCAAACCTGACCATGCCAC...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS GCA 90 bp GACCACACAAGAACAGGGAACATCTGGTTTCCATACTTCTTAATATaGTTGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTGCCTTCG +
Preference number: 5 (lower is better)
Translates to: DHTRTGNIWFPYFLI*LQIIQSISGRGVPS
Trigger: CGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAACCAGATGTTCCCTGTTCTTGTGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS CCA 90 bp ATTATTACATTTCTTAATATGCTTGCAGATCATCCAGTCGATTTCTaGAAGAGGGGTGCCTTCGGCTGTACACCTCACAGTCTGTCCCCC +
Preference number: 5 (lower is better)
Translates to: IITFLNMLADHPVDF*KRGAFGCTPHSLSP
Trigger: GGGGGACAGACTGTGAGGTGTACAGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAATGTAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAACAAAGAGGCCACTGTaGTTCTCCTCACTTCTGATT +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATTKRPL*FSSLLI
Trigger: AATCAGAAGTGAGGAGAACAACAGTGGCCTCTTTGT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GGTGGACTGAGTGGTCTCTTCAGAGGTCCGGAGAGGAGAGTTAACACAGATCTAGATTCAGTTCTGACGTaGCTTTCAAGGCATAAACAT +
Preference number: 5 (lower is better)
Translates to: GGLSGLFRGPERRVNTDLDSVLT*LSRHKH
Trigger: ATGTTTATGCCTTGAAAGCAACGTCAGAACTGAATC...TAGATCTGTGTTAACTCTCCTCTCCGGACCTCTGAAGAGACCACTCAGTCCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAATTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTG +
Preference number: 5 (lower is better)
Translates to: IGLHQQPCVFILLTHRAQLMDGS*ISSSMV
Trigger: CACCATGCTGGAGGAGATCAAACTCCCATCCATCAA...TTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACACTGACTTCGTGCAAGTaGACAGCTTCCAGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: YISNPASLFFSHIEHKSTLTSCK*TASSWP
Trigger: TGGCCAGCTGGAAGCTGTCAACTTGCACGAAGTCAG...TGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp GTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCACCACTGACCTGGCTGTGGGTTaGAGCATCTTCACAGCCACC +
Preference number: 5 (lower is better)
Translates to: VRLPTFRLAIEKTPIITTDLAVG*SIFTAT
Trigger: GGTGGCTGTGAAGATGCTCAAACCCACAGCCAGGTC...AGTGGTGATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CAA 90 bp CCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTGACCTGGCTGTGGGTTaGAGCATCTTCACAGCCACC +
Preference number: 5 (lower is better)
Translates to: PCVFILLTHRAQIYKKLSDLAVG*SIFTAT
Trigger: GGTGGCTGTGAAGATGCTCAAACCCACAGCCAGGTC...AGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACATCCGAAAGGAGGTTTTaGACTTCTGAGTCTAGCATG +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATSERRF*TSESSM
Trigger: CATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGGA...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAAAAGTGTACACCAGTTaGATGGATGGGAGTTTGATC +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATKVYTS*MDGSLI
Trigger: GATCAAACTCCCATCCATCAAACTGGTGTACACTTT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTAAAGTGTACACCAGTTaGATGGATGGGAGTTTGATC +
Preference number: 5 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVKVYTS*MDGSLI
Trigger: GATCAAACTCCCATCCATCAAACTGGTGTACACTTT...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp CCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTCTGACTTCGTGCAAGTaGACAGCTTCCAGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: PCVFILLTHRAQIYKKLSLTSCK*TASSWP
Trigger: TGGCCAGCTGGAAGCTGTCAACTTGCACGAAGTCAG...AGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 90 bp TGCAGGATTCAATCCAAAGATGTCCAGGTCTTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCTATCTCTGTTCTTATGCAAGTAGTT +
Preference number: 5 (lower is better)
Translates to: CRIQSKDVQVFLRLL*VLAHEAISVLMQVV
Trigger: AACTACTTGCATAAGAACAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAAGACCTGGACATCTTTGGATTGAATCCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGAC +
Preference number: 5 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVLLIST*GSSSSD
Trigger: GTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAG...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GAAGCCAAGAACTTAAACAGTAGCCTTCCTGCATGGTTGACTTCTAGCCCCGTTGATTCAGTTCTGACGTaGCTTTCAAGGCATAAACAT +
Preference number: 5 (lower is better)
Translates to: EAKNLNSSLPAWLTSSPVDSVLT*LSRHKH
Trigger: ATGTTTATGCCTTGAAAGCAACGTCAGAACTGAATC...AACGGGGCTAGAAGTCAACCATGCAGGAAGGCTACTGTTTAAGTTCTTGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TACACCGGGCAAGCAATATACCATAGGGCTACATCAGCAACCCTGCGTCTTTATGATTCAGTTCTGACGTaGCTTTCAAGGCATAAACAT +
Preference number: 5 (lower is better)
Translates to: YTGQAIYHRATSATLRLYDSVLT*LSRHKH
Trigger: ATGTTTATGCCTTGAAAGCAACGTCAGAACTGAATC...ATAAAGACGCAGGGTTGCTGATGTAGCCCTATGGTATATTGCTTGCCCGGTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp AACAATGTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCTCCTTCACCGTGGCCTaGGGGACGGTCAAAGTGTAC +
Preference number: 5 (lower is better)
Translates to: NNVRLPTFRLAIEKTPIISFTVA*GTVKVY
Trigger: GTACACTTTGACCGTCCCCAAGGCCACGGTGAAGGA...GATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTACATTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAATTTGCTCTGATACCTaGTTTCCTGACTCTTCTGTA +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATICSDT*FPDSSV
Trigger: TACAGAAGAGTCAGGAAACAAGGTATCAGAGCAAAT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp ACGGATAAAGTTCAATCCAAGTATCCCAGTCATCCACACAGGCTTACCAAGGCCATAATATTTGAGACATaGCTGGCCAAAACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: TDKVQSKYPSHPHRLTKAIIFET*LAKTVH
Trigger: GTGGACAGTTTTGGCCAGCAATGTCTCAAATATTAT...GGCCTTGGTAAGCCTGTGTGGATGACTGGGATACTTGGATTGAACTTTATCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp TGGTCTGAGAAGTATCATCCAACTTCATGGTGTCATGCAAGGCCCAAAGCGACAATAATATTTGAGACATaGCTGGCCAAAACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: WSEKYHPTSWCHARPKATIIFET*LAKTVH
Trigger: GTGGACAGTTTTGGCCAGCAATGTCTCAAATATTAT...TGTCGCTTTGGGCCTTGCATGACACCATGAAGTTGGATGATACTTCTCAGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp CAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTACTTCATGAGAAAATTCAAGACCTGGCTGTGGGTTaGAGCATCTTCACAGCCACC +
Preference number: 5 (lower is better)
Translates to: QYLPKFKVVLHVLHEKIQDLAVG*SIFTAT
Trigger: GGTGGCTGTGAAGATGCTCAAACCCACAGCCAGGTC...TTGAATTTTCTCATGAAGTACATGCAAAACCACTTTGAACTTTGGAAGGTACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS CCA 90 bp ATGTCATGGAAGAAACATCCCGACCACACAAGAACAGGGAACATCTaGTTTCCATACTTCTTAATATGCTTGCAGATCATCCAGTCGATT +
Preference number: 5 (lower is better)
Translates to: MSWKKHPDHTRTGNI*FPYFLICLQIIQSI
Trigger: AATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAACCAGATGTTCCCTGTTCTTGTGTGGTCGGGATGTTTCTTCCATGACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS-3UTR CAA 90 bp ATAGGGCTACATCAGCAACCCTGCGTCTTTATTCTTCTCACACATAGAGCACAAGATTCAGTTCTGACGTaGCTTTCAAGGCATAAACAT +
Preference number: 5 (lower is better)
Translates to: IGLHQQPCVFILLTHRAQDSVLT*LSRHKH
Trigger: ATGTTTATGCCTTGAAAGCAACGTCAGAACTGAATC...TTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGGGTTGCTGATGTAGCCCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp CCTGCGTCTTTATTCTTCTCACACATAGAGCACAAATCTACAAAAAGCTATCTTTTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTG +
Preference number: 5 (lower is better)
Translates to: PASLFFSHIEHKSTKSYLLMDGS*ISSSMV
Trigger: CACCATGCTGGAGGAGATCAAACTCCCATCCATCAA...AAGATAGCTTTTTGTAGATTTGTGCTCTATGTGTGAGAAGAATAAAGACGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS-3UTR CAA 90 bp AATGGCTTGTACCTTTCACTTAAGAACCCTGAAAGCATTCAGAGCATGTTAGCGATAATATTTGAGACATaGCTGGCCAAAACTGTCCAC +
Preference number: 5 (lower is better)
Translates to: NGLYLSLKNPESIQSMLAIIFET*LAKTVH
Trigger: GTGGACAGTTTTGGCCAGCAATGTCTCAAATATTAT...CGCTAACATGCTCTGAATGCTTTCAGGGTTCTTAAGTGAAAGGTACAAGCCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CAA 90 bp AGTAAAACACGACGGTTCCAGTACCTTCCAAAGTTCAAAGTGGTTTTGCATGTAATTTGCTCTGATACCTaGTTTCCTGACTCTTCTGTA +
Preference number: 5 (lower is better)
Translates to: SKTRRFQYLPKFKVVLHVICSDT*FPDSSV
Trigger: TACAGAAGAGTCAGGAAACAAGGTATCAGAGCAAAT...TACATGCAAAACCACTTTGAACTTTGGAAGGTACTGGAACCGTCGTGTTTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS-3UTR CAA 90 bp GTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCACCACTATTTGCTCTGATACCTaGTTTCCTGACTCTTCTGTA +
Preference number: 5 (lower is better)
Translates to: VRLPTFRLAIEKTPIITTICSDT*FPDSSV
Trigger: TACAGAAGAGTCAGGAAACAAGGTATCAGAGCAAAT...AGTGGTGATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS-3UTR CAA 90 bp AACAATGTAAGATTGCCAACTTTCAGATTGGCCATTGAGAAAACACCAATTATCAAAGTGTACACCAGTTaGATGGATGGGAGTTTGATC +
Preference number: 5 (lower is better)
Translates to: NNVRLPTFRLAIEKTPIIKVYTS*MDGSLI
Trigger: GATCAAACTCCCATCCATCAAACTGGTGTACACTTT...GATAATTGGTGTTTTCTCAATGGCCAATCTGAAAGTTGGCAATCTTACATTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201711.4
CDS TCA 72 bp TGGGAGCCACCAGCTTCAGCTCACGGGCCACAACGCTaGGGTTGTTCTTTGCCAGGCATCGAACTGCGATGG +
Preference number: 6 (lower is better)
Translates to: WEPPASAHGPQR*GCSLPGIELRW
Trigger: CCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAGCTGGTGGCTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 90 bp AGGTTGTTCTTTGCCAGGCATCGAACTGCGATGGTCTCTTCCACTTaGGCGAAGGACACTCGTCCCTCCACGGTACTCCTGCCACGGCGA +
Preference number: 6 (lower is better)
Translates to: RLFFARHRTAMVSST*AKDTRPSTVLLPRR
Trigger: TCGCCGTGGCAGGAGTACCGTGGAGGGACGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS TCA 72 bp CAATCACCAACAGCACCAACACTGCGGCCGCCACTGTaGGTTCAGATCGCAGAGTGGGAGCCACCAGCTTCA +
Preference number: 6 (lower is better)
Translates to: QSPTAPTLRPPL*VQIAEWEPPAS
Trigger: TGAAGCTGGTGGCTCCCACTCTGCGATCTGAACTCACAGTGGCGGCCGCAGTGTTGGTGCTGTTGGTGATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 72 bp GCTTGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTaGCTTCGGCTGTACACCTCACAGTCTGTCCCCCGC +
Preference number: 6 (lower is better)
Translates to: ACRSSSRFLEEG*LRLYTSQSVPR
Trigger: GCGGGGGACAGACTGTGAGGTGTACAGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 72 bp TTGCCAGGCATCGAACTGCGATGGTCTCTTCCACTTTaGCGAAGGACACTCGTCCCTCCACGGTACTCCTGC +
Preference number: 6 (lower is better)
Translates to: LPGIELRWSLPL*RRTLVPPRYSC
Trigger: GCAGGAGTACCGTGGAGGGACGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 90 bp AGAGTGGGAGCCACCAGCTTCAGCTCACGGGCCACAACGCTGAGGTaGTTCTTTGCCAGGCATCGAACTGCGATGGTCTCTTCCACTTTG +
Preference number: 6 (lower is better)
Translates to: RVGATSFSSRATTLR*FFARHRTAMVSSTL
Trigger: CAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAGCTGGTGGCTCCCACTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS TCA 72 bp CCTCCTCTGGAACAGGGTCAATGTCTGGCAGGGGGATaGTGTAGCCACTGTCAGCGCTCAGTCTCTGTTCGT +
Preference number: 6 (lower is better)
Translates to: PPLEQGQCLAGG*CSHCQRSVSVR
Trigger: ACGAACAGAGACTGAGCGCTGACAGTGGCTACATCATCCCCCTGCCAGACATTGACCCTGTTCCAGAGGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS CAA 72 bp TTTGCCAGGCATCGAACTGCGATGGTCTCTTCCACTTaGGCGAAGGACACTCGTCCCTCCACGGTACTCCTG +
Preference number: 6 (lower is better)
Translates to: FARHRTAMVSST*AKDTRPSTVLL
Trigger: CAGGAGTACCGTGGAGGGACGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 90 bp GTCATAGGAGGCAGGCACCAGCCTCCCGTTATTGTGCAAGGTTACTaGAGTCTCCGGATCTGTGGTGCGGCAAGGTATGATGGCAGAGTC +
Preference number: 6 (lower is better)
Translates to: VIGGRHQPPVIVQGY*SLRICGAARYDGRV
Trigger: GACTCTGCCATCATACCTTGCCGCACCACAGATCCGGAGACTCAAGTAACCTTGCACAATAACGGGAGGCTGGTGCCTGCCTCCTATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS TCA 72 bp TGTATTGTCCCGGCAACAGGTTCTCCACTATCTCGCTaGGGTGGTAGAAGGAGGGTCTCTTCTCGGGCTCAC +
Preference number: 6 (lower is better)
Translates to: CIVPATGSPLSR*GGRRRVSSRAH
Trigger: GTGAGCCCGAGAAGAGACCCTCCTTCTACCACCTCAGCGAGATAGTGGAGAACCTGTTGCCGGGACAATACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS GCA 72 bp GAGAGAGACAATGACAATCACCAACAGCACCAACACTaGGGCCGCCACTGTGAGTTCAGATCGCAGAGTGGG +
Preference number: 6 (lower is better)
Translates to: ERDNDNHQQHQH*GRHCEFRSQSG
Trigger: CCCACTCTGCGATCTGAACTCACAGTGGCGGCCGCAGTGTTGGTGCTGTTGGTGATTGTCATTGTCTCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 72 bp GCTGTACACCTCACAGTCTGTCCCCCGCCAGAGCCATaGTGGTCATCTACGAGATCCAAAATGGATGCAGGA +
Preference number: 6 (lower is better)
Translates to: AVHLTVCPPPEP*WSSTRSKMDAG
Trigger: TCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCGGGGGACAGACTGTGAGGTGTACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS GCA 72 bp GTGGTTGTAGTAGCAAGTGTACCATCCGGTGTGGGCTaGGGAGGCGTTAACCACTTCCAGCACTGTGACAAA +
Preference number: 6 (lower is better)
Translates to: VVVVASVPSGVG*GGVNHFQHCDK
Trigger: TTTGTCACAGTGCTGGAAGTGGTTAACGCCTCCGCAGCCCACACCGGATGGTACACTTGCTACTACAACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS GCA 72 bp CACAACGCTGAGGTTGTTCTTTGCCAGGCATCGAACTaGGATGGTCTCTTCCACTTTGGCGAAGGACACTCG +
Preference number: 6 (lower is better)
Translates to: HNAEVVLCQASN*DGLFHFGEGHS
Trigger: CGAGTGTCCTTCGCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 72 bp CTTCAGCTCACGGGCCACAACGCTGAGGTTGTTCTTTaGCAGGCATCGAACTGCGATGGTCTCTTCCACTTT +
Preference number: 6 (lower is better)
Translates to: LQLTGHNAEVVL*QASNCDGLFHF
Trigger: AAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGCTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 72 bp GTACACCTCACAGTCTGTCCCCCGCCAGAGCCATGGTaGTCATCTACGAGATCCAAAATGGATGCAGGAACT +
Preference number: 6 (lower is better)
Translates to: VHLTVCPPPEPW*SSTRSKMDAGT
Trigger: AGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCGGGGGACAGACTGTGAGGTGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 72 bp AGGCCACTGTTGTTCTCCTCACTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGACATGGGGTGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: RPLLFSSLLIST*GSSSSDMGCCQ
Trigger: CTGGCAGCACCCCATGTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAGTGAGGAGAACAACAGTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202161.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS TCA 72 bp GTCTCTTCTCGGGCTCACTGTTCCAGCACTGCACCATaGTCTCATAGACTTCACTGGTGGCATGGTCAGGTT +
Preference number: 6 (lower is better)
Translates to: VSSRAHCSSTAP*SHRLHWWHGQV
Trigger: AACCTGACCATGCCACCAGTGAAGTCTATGAGATCATGGTGCAGTGCTGGAACAGTGAGCCCGAGAAGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS CCA 72 bp GGTCATCCCGAGAGGCACAAAGGCCATGTCTGGGTCTaGTACATAGATGTAAATGTGCCTGCCTTCGATCTC +
Preference number: 6 (lower is better)
Translates to: GHPERHKGHVWV*YIDVNVPAFDL
Trigger: GAGATCGAAGGCAGGCACATTTACATCTATGTACCAGACCCAGACATGGCCTTTGTGCCTCTCGGGATGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 72 bp GGAATCGGTCATCCCGAGAGGCACAAAGGCCATGTCTaGGTCTGGTACATAGATGTAAATGTGCCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: GIGHPERHKGHV*VWYIDVNVPAF
Trigger: GAAGGCAGGCACATTTACATCTATGTACCAGACCCAGACATGGCCTTTGTGCCTCTCGGGATGACCGATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 72 bp TCGGGAATTCCCATCTGGAGTCGTAAGGCAACTGCATaGGGTCCACATAGATATACTCATGTCCATCGGGGC +
Preference number: 6 (lower is better)
Translates to: SGIPIWSRKATA*GPHRYTHVHRG
Trigger: GCCCCGATGGACATGAGTATATCTATGTGGACCCCATGCAGTTGCCTTACGACTCCAGATGGGAATTCCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 90 bp GTGACAAAGAGGCCACTGTTGTTCTCCTCACTTCTGATTTCCACGTaGGGGTCGTCTTCTTCAGACATGGGGTGCTGCCAGCTCACTTCA +
Preference number: 6 (lower is better)
Translates to: VTKRPLLFSSLLIST*GSSSSDMGCCQLTS
Trigger: TGAAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACGACCCCAACGTGGAAATCAGAAGTGAGGAGAACAACAGTGGCCTCTTTGTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202161.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CAA 90 bp GCGGAGGCGTTAACCACTTCCAGCACTGTGACAAAGAGGCCACTGTaGTTCTCCTCACTTCTGATTTCCACGTTGGGGTCGTCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: AEALTTSSTVTKRPL*FSSLLISTLGSSSS
Trigger: TGAAGAAGACGACCCCAACGTGGAAATCAGAAGTGAGGAGAACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGGTTAACGCCTCCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS TCA 72 bp ACTCCTGCCACGGCGAGGGAGCTCTGTGATAATATTTaGGACATTGCTGGCCAAAACTGTCCACGAAGTGTC +
Preference number: 6 (lower is better)
Translates to: TPATARELCDNI*DIAGQNCPRSV
Trigger: GACACTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATATTATCACAGAGCTCCCTCGCCGTGGCAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 72 bp GTCACCACGATCGTTTCTCCTGCCTTATACACAGTCTaGCGTGCGTCCATCTCCAGATTCAGTTCTGACGTT +
Preference number: 6 (lower is better)
Translates to: VTTIVSPALYTV*RASISRFSSDV
Trigger: AACGTCAGAACTGAATCTGGAGATGGACGCACGCCAGACTGTGTATAAGGCAGGAGAAACGATCGTGGTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 72 bp CGCCAGAGCCATGGTGGTCATCTACGAGATCCAAAATaGATGCAGGAACTAGGGTTGACAGCTCAAACGTGT +
Preference number: 6 (lower is better)
Translates to: RQSHGGHLRDPK*MQELGLTAQTC
Trigger: ACACGTTTGAGCTGTCAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATGGCTCTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 72 bp GCACATTCATACTCTCCACTGTCCTTCACCGTGGCCTaGGGGACGGTCAAAGTGTACACCAGTTTGATGGAT +
Preference number: 6 (lower is better)
Translates to: AHSYSPLSFTVA*GTVKVYTSLMD
Trigger: ATCCATCAAACTGGTGTACACTTTGACCGTCCCCAAGGCCACGGTGAAGGACAGTGGAGAGTATGAATGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 90 bp ATGTCATCCATCATGTCGATGTCCTCGATGGTCTCGTCCTCTCTCTaGATGAAGGTGGAACTACTGGAACCTGTCTCGATGGCACTCTCT +
Preference number: 6 (lower is better)
Translates to: MSSIMSMSSMVSSSL*MKVELLEPVSMALS
Trigger: AGAGAGTGCCATCGAGACAGGTTCCAGTAGTTCCACCTTCATCAAGAGAGAGGACGAGACCATCGAGGACATCGACATGATGGATGACAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS GCA 72 bp CCATGTCTGGGTCTGGTACATAGATGTAAATGTGCCTaGCTTCGATCTCACTCTCATCCGTCTGAGTGTGGT +
Preference number: 6 (lower is better)
Translates to: PCLGLVHRCKCA*LRSHSHPSECG
Trigger: ACCACACTCAGACGGATGAGAGTGAGATCGAAGGCAGGCACATTTACATCTATGTACCAGACCCAGACATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 72 bp CCAAAGGTGGGCTCAATCTCGACGAAGCCTTTCTCGTaGACAGAAATGGTGACTCTCTTCATTTCCTTGACC +
Preference number: 6 (lower is better)
Translates to: PKVGSISTKPFS*TEMVTLFISLT
Trigger: GGTCAAGGAAATGAAGAGAGTCACCATTTCTGTCCACGAGAAAGGCTTCGTCGAGATTGAGCCCACCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 90 bp GCCTTGGGGACGGTCAAAGTGTACACCAGTTTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTGATACCTTTGTTTCTCACTTCTCCA +
Preference number: 6 (lower is better)
Translates to: ALGTVKVYTSLMDGS*ISSSMVIPLFLTSP
Trigger: TGGAGAAGTGAGAAACAAAGGTATCACCATGCTGGAGGAGATCAAACTCCCATCCATCAAACTGGTGTACACTTTGACCGTCCCCAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS TCA 72 bp GTCCACATAGATATACTCATGTCCATCGGGGCTGATTaGCTCGATAACCCTCCAGCGAATTTCATACCGTGG +
Preference number: 6 (lower is better)
Translates to: VHIDILMSIGAD*LDNPPANFIPW
Trigger: CCACGGTATGAAATTCGCTGGAGGGTTATCGAGTCAATCAGCCCCGATGGACATGAGTATATCTATGTGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CCA 72 bp CTTGGGGACGGTCAAAGTGTACACCAGTTTGATGGATaGGAGTTTGATCTCCTCCAGCATGGTGATACCTTT +
Preference number: 6 (lower is better)
Translates to: LGDGQSVHQFDG*EFDLLQHGDTF
Trigger: AAAGGTATCACCATGCTGGAGGAGATCAAACTCCCATCCATCAAACTGGTGTACACTTTGACCGTCCCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CCA 72 bp CTTCTTAATATGCTTGCAGATCATCCAGTCGATTTCTaGAAGAGGGGTGCCTTCGGCTGTACACCTCACAGT +
Preference number: 6 (lower is better)
Translates to: LLNMLADHPVDF*KRGAFGCTPHS
Trigger: ACTGTGAGGTGTACAGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS CAA 90 bp CACACAAGAACAGGGAACATCTGGTTTCCATACTTCTTAATATGCTaGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTGCCTTCGGCT +
Preference number: 6 (lower is better)
Translates to: HTRTGNIWFPYFLIC*QIIQSISGRGVPSA
Trigger: AGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAACCAGATGTTCCCTGTTCTTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS TCA 72 bp CACAGTCTGGCGTGCGTCCATCTCCAGATTCAGTTCTaGCGTTGCTTTCAAGGCATAAACATTAAACTCGCT +
Preference number: 6 (lower is better)
Translates to: HSLACVHLQIQF*RCFQGINIKLA
Trigger: AGCGAGTTTAATGTTTATGCCTTGAAAGCAACGTCAGAACTGAATCTGGAGATGGACGCACGCCAGACTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS TCA 72 bp TCAGACCCTCGGAGTCATCGTCCGAAAGGAGGTTTTTaGCTTCTGAGTCTAGCATGGATTTCTTCTTGTAGG +
Preference number: 6 (lower is better)
Translates to: SDPRSHRPKGGF*LLSLAWISSCR
Trigger: CCTACAAGAAGAAATCCATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGGACGATGACTCCGAGGGTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
CDS GCA 72 bp TCCCCAACGCATCTCAGAGAAAAGGACGAATTCAGCTaGACAATCTTCTCATTCTCGTTTGGGAGGATAGAG +
Preference number: 6 (lower is better)
Translates to: SPTHLREKDEFS*TIFSFSFGRIE
Trigger: CTCTATCCTCCCAAACGAGAATGAGAAGATTGTGCAGCTGAATTCGTCCTTTTCTCTGAGATGCGTTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000200822.2
ENSMUST00000201711.4
ENSMUST00000202161.4
ENSMUST00000202186.4
ENSMUST00000202681.4
ENSMUST00000202992.4
CDS CCA 72 bp CAATCCAAAGATGTCCAGGTCTTTCTTCGGCTTCTCTaGGTGTTGGCTCATGAAGCTATCTCTGTTCTTATG +
Preference number: 6 (lower is better)
Translates to: QSKDVQVFLRLL*VLAHEAISVLM
Trigger: CATAAGAACAGAGATAGCTTCATGAGCCAACACCCAGAGAAGCCGAAGAAAGACCTGGACATCTTTGGATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 72 bp ACGGTCAAAGTGTACACCAGTTTGATGGATGGGAGTTaGATCTCCTCCAGCATGGTGATACCTTTGTTTCTC +
Preference number: 6 (lower is better)
Translates to: TVKVYTSLMDGS*ISSSMVIPLFL
Trigger: GAGAAACAAAGGTATCACCATGCTGGAGGAGATCAAACTCCCATCCATCAAACTGGTGTACACTTTGACCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 72 bp CATCTACGAGATCCAAAATGGATGCAGGAACTAGGGTaGACAGCTCAAACGTGTAACTCTTCACGTCATCCT +
Preference number: 6 (lower is better)
Translates to: HLRDPKWMQELG*TAQTCNSSRHP
Trigger: AGGATGACGTGAAGAGTTACACGTTTGAGCTGTCAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 90 bp CATGGTGGTCATCTACGAGATCCAAAATGGATGCAGGAACTAGGGTaGACAGCTCAAACGTGTAACTCTTCACGTCATCCTCATTTTGAA +
Preference number: 6 (lower is better)
Translates to: HGGHLRDPKWMQELG*TAQTCNSSRHPHFE
Trigger: TTCAAAATGAGGATGACGTGAAGAGTTACACGTTTGAGCTGTCAACCCTAGTTCCTGCATCCATTTTGGATCTCGTAGATGACCACCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 90 bp GCCAAAACTGTCCACGAAGTGTCATTATTACATTTCTTAATATGCTaGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTGCCTTCGGCT +
Preference number: 6 (lower is better)
Translates to: AKTVHEVSLLHFLIC*QIIQSISGRGVPSA
Trigger: AGCCGAAGGCACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAATGTAATAATGACACTTCGTGGACAGTTTTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 90 bp GTACTCCTGCCACGGCGAGGGAGCTCTGTGATAATATTTGAGACATaGCTGGCCAAAACTGTCCACGAAGTGTCATTATTACATTTCTTA +
Preference number: 6 (lower is better)
Translates to: VLLPRRGSSVIIFET*LAKTVHEVSLLHFL
Trigger: TAAGAAATGTAATAATGACACTTCGTGGACAGTTTTGGCCAGCAATGTCTCAAATATTATCACAGAGCTCCCTCGCCGTGGCAGGAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 72 bp CCTTTCAAGCATGGGGACATACTGTGTGGTATCAGCTaGCTTCATGTCCATGTAGTCGCCGTTATTTTCAAA +
Preference number: 6 (lower is better)
Translates to: PFKHGDILCGIS*LHVHVVAVIFK
Trigger: TTTGAAAATAACGGCGACTACATGGACATGAAGCAAGCTGATACCACACAGTATGTCCCCATGCTTGAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS CAA 72 bp ACAGGGAACATCTGGTTTCCATACTTCTTAATATGCTaGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTG +
Preference number: 6 (lower is better)
Translates to: TGNIWFPYFLIC*QIIQSISGRGV
Trigger: CACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAACCAGATGTTCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS GCA 72 bp AGAACAGGGAACATCTGGTTTCCATACTTCTTAATATaGTTGCAGATCATCCAGTCGATTTCTGGAAGAGGG +
Preference number: 6 (lower is better)
Translates to: RTGNIWFPYFLI*LQIIQSISGRG
Trigger: CCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAGTATGGAAACCAGATGTTCCCTGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202186.4
CDS CAA 72 bp CAGCTCAAACGTGTAACTCTTCACGTCATCCTCATTTaGAACTATAATGGTGTAATGGCCACTGTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: QLKRVTLHVILI*NYNGVMATVFF
Trigger: GAAGAAGACAGTGGCCATTACACCATTATAGTTCAAAATGAGGATGACGTGAAGAGTTACACGTTTGAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202186.4
ENSMUST00000202681.4
CDS CAA 72 bp GTCCACGAAGTGTCATTATTACATTTCTTAATATGCTaGCAGATCATCCAGTCGATTTCTGGAAGAGGGGTG +
Preference number: 6 (lower is better)
Translates to: VHEVSLLHFLIC*QIIQSISGRGV
Trigger: CACCCCTCTTCCAGAAATCGACTGGATGATCTGCAAGCATATTAAGAAATGTAATAATGACACTTCGTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4
CDS GCA 72 bp AAAAGACAAAATCACATAACTTCTTGTGCTCTCGTCTaGAGGATTCAATCCAAAGATGTCCAGGTCTTTCTT +
Preference number: 6 (lower is better)
Translates to: KRQNHITSCALV*RIQSKDVQVFL
Trigger: AAGAAAGACCTGGACATCTTTGGATTGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGATTTTGTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000000476.15
ENSMUST00000168162.5
ENSMUST00000201711.4
ENSMUST00000202681.4