RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078931

Ensembl transcript IDs: ENSMUST00000055316.10, ENSMUST00000154271.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACCTGGGGTCAGCCTTTTTCAGCTACATGCTTGTCTCTGCAGTCTaGCATGCTCCGGTCTTTGGCCACTACCCGGCCCACAGTGAATGC +
Preference number: 1 (lower is better)
Translates to: DLGSAFFSYMLVSAV*HAPVFGHYPAHSEC
Trigger: GCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGTAGCTGAAAAAGGCTGACCCCAGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 90 bp TGCAGTCTGACATGCTCCGGTCTTTGGCCACTACCCGGCCCACAGTaGATGCAGACGACCTCCTTATCAATCAATTGTAGGCTGTGGGGT +
Preference number: 1 (lower is better)
Translates to: CSLTCSGLWPLPGPQ*MQTTSLSINCRLWG
Trigger: ACCCCACAGCCTACAATTGATTGATAAGGAGGTCGTCTGCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 90 bp CACTATCATTCCAAGGCCTGGCTTTTTGGTCCAGAAGGAAACCAGTaGAAATCTTTTTCACATGGCTCTTACCTGAACAGTATAGACCTC +
Preference number: 1 (lower is better)
Translates to: HYHSKAWLFGPEGNQ*KSFSHGSYLNSIDL
Trigger: GAGGTCTATACTGTTCAGGTAAGAGCCATGTGAAAAAGATTTTCACTGGTTTCCTTCTGGACCAAAAAGCCAGGCCTTGGAATGATAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR-3UTR TCA 90 bp GTGAATTCAGTAATGGAACTACTGCTGGGATGGGATGAGAGCTGCGGGGTGAAGCTACCCGGCCCACAGTaGATGCAGACGACCTCCTTA +
Preference number: 2 (lower is better)
Translates to: VNSVMELLLGWDESCGVKLPGPQ*MQTTSL
Trigger: TAAGGAGGTCGTCTGCATTCACTGTGGGCCGGGTAG...CTTCACCCCGCAGCTCTCATCCCATCCCAGCAGTAGTTCCATTACTGAATTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR CAA 90 bp TTTTCAGCTACATGCTTGTCTCTGCAGTCTGACATGCTCCGGTCTTaGGCCACTACCCGGCCCACAGTGAATGCAGACGACCTCCTTATC +
Preference number: 2 (lower is better)
Translates to: FSATCLSLQSDMLRS*ATTRPTVNADDLLI
Trigger: GATAAGGAGGTCGTCTGCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGTAGCTGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR CAA 90 bp ATTTGTACAGAGGATGTTTGCCTGCCCACTCCTCTCCATGGGAAATaGTCAGGAAATAGCCACTCCTTTAATGGTACATTTGTAGTCCTG +
Preference number: 2 (lower is better)
Translates to: ICTEDVCLPTPLHGK*SGNSHSFNGTFVVL
Trigger: CAGGACTACAAATGTACCATTAAAGGAGTGGCTATTTCCTGACAATTTCCCATGGAGAGGAGTGGGCAGGCAAACATCCTCTGTACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055316.10
ENSMUST00000154271.2
3UTR TCA 72 bp TCAGCCTTTTTCAGCTACATGCTTGTCTCTGCAGTCTaGCATGCTCCGGTCTTTGGCCACTACCCGGCCCAC +
Preference number: 3 (lower is better)
Translates to: SAFFSYMLVSAV*HAPVFGHYPAH
Trigger: GTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGTAGCTGAAAAAGGCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR GCA 72 bp CCTGGGGTCAGCCTTTTTCAGCTACATGCTTGTCTCTaGAGTCTGACATGCTCCGGTCTTTGGCCACTACCC +
Preference number: 3 (lower is better)
Translates to: PGVSLFQLHACL*SLTCSGLWPLP
Trigger: GGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGTAGCTGAAAAAGGCTGACCCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR GCA 72 bp GCTCCGGTCTTTGGCCACTACCCGGCCCACAGTGAATaGAGACGACCTCCTTATCAATCAATTGTAGGCTGT +
Preference number: 3 (lower is better)
Translates to: APVFGHYPAHSE*RRPPYQSIVGC
Trigger: ACAGCCTACAATTGATTGATAAGGAGGTCGTCTGCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 72 bp ACATGCTCCGGTCTTTGGCCACTACCCGGCCCACAGTaGATGCAGACGACCTCCTTATCAATCAATTGTAGG +
Preference number: 3 (lower is better)
Translates to: TCSGLWPLPGPQ*MQTTSLSINCR
Trigger: CCTACAATTGATTGATAAGGAGGTCGTCTGCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 72 bp ACACTGTCTACTGTCGGACTGGAACCAATTCCAAGCTaGAGCACAGATGTGACCATCTTAGTCTGCATGCTG +
Preference number: 3 (lower is better)
Translates to: TLSTVGLEPIPS*STDVTILVCML
Trigger: CAGCATGCAGACTAAGATGGTCACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCGACAGTAGACAGTGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055316.10
ENSMUST00000154271.2
3UTR CCA 72 bp TCTAGACAGCATGACAAAAGGAGAGTACTGAGGACCTaGGGTCAGCCTTTTTCAGCTACATGCTTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: SRQHDKRRVLRT*GQPFSATCLSL
Trigger: CAGAGACAAGCATGTAGCTGAAAAAGGCTGACCCCAGGTCCTCAGTACTCTCCTTTTGTCATGCTGTCTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 72 bp TCCAAGGCCTGGCTTTTTGGTCCAGAAGGAAACCAGTaGAAATCTTTTTCACATGGCTCTTACCTGAACAGT +
Preference number: 3 (lower is better)
Translates to: SKAWLFGPEGNQ*KSFSHGSYLNS
Trigger: ACTGTTCAGGTAAGAGCCATGTGAAAAAGATTTTCACTGGTTTCCTTCTGGACCAAAAAGCCAGGCCTTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR TCA 72 bp TGCATTTTAAGACAACTTTCAAGTCCAGCAGTAGTGTaGTACACCTTCAGTCCCAAAGCTCAGGAGTACAGA +
Preference number: 3 (lower is better)
Translates to: CILRQLSSPAVV*YTFSPKAQEYR
Trigger: TCTGTACTCCTGAGCTTTGGGACTGAAGGTGTATCACACTACTGCTGGACTTGAAAGTTGTCTTAAAATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR CCA 90 bp GCACACACTGTCTACTGTCGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTACCGGGTCCCCGACCTaGCACACGTGCGCGTATGGC +
Preference number: 4 (lower is better)
Translates to: AHTVYCRTGTNSKLKHRCTGSPT*HTCAYG
Trigger: GCCATACGCGCACGTGTGCCAGGTCGGGGACCCGGT...ACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCGACAGTAGACAGTGTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR GCA 90 bp CGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTGACCATCTTAGTCTGCATAAGGAGCTGCACCTCTaGGCCCGGCTCCCCGGAACC +
Preference number: 4 (lower is better)
Translates to: RTGTNSKLKHRCDHLSLHKELHL*ARLPGT
Trigger: GGTTCCGGGGAGCCGGGCGCAGAGGTGCAGCTCCTT...ATGCAGACTAAGATGGTCACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR GCA 90 bp GCACACACTGTCTACTGTCGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTTCGAGCGCCAACACTTaGAGCGGCACCCCGAGCTGC +
Preference number: 4 (lower is better)
Translates to: AHTVYCRTGTNSKLKHRCSSANT*SGTPSC
Trigger: GCAGCTCGGGGTGCCGCTGCAAGTGTTGGCGCTCGA...ACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCGACAGTAGACAGTGTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
3UTR CAA 72 bp ACATGCTTGTCTCTGCAGTCTGACATGCTCCGGTCTTaGGCCACTACCCGGCCCACAGTGAATGCAGACGAC +
Preference number: 4 (lower is better)
Translates to: TCLSLQSDMLRS*ATTRPTVNADD
Trigger: GTCGTCTGCATTCACTGTGGGCCGGGTAGTGGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
3UTR CAA 72 bp CTGAGGACCTGGGGTCAGCCTTTTTCAGCTACATGCTaGTCTCTGCAGTCTGACATGCTCCGGTCTTTGGCC +
Preference number: 4 (lower is better)
Translates to: LRTWGQPFSATC*SLQSDMLRSLA
Trigger: GGCCAAAGACCGGAGCATGTCAGACTGCAGAGACAAGCATGTAGCTGAAAAAGGCTGACCCCAGGTCCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
CDS-3UTR TCA 90 bp TTGAGGCCAGCTTGTCTACAGAGTGAGTTCCACGACAGCCAAGGCTACACAGAGAAGCAGCCCTGCAAGTaGTCCATCTCATGCTGGATG +
Preference number: 4 (lower is better)
Translates to: LRPACLQSEFHDSQGYTEKQPCK*SISCWM
Trigger: CATCCAGCATGAGATGGATCACTTGCAGGGCTGCTT...CTCTGTGTAGCCTTGGCTGTCGTGGAACTCACTCTGTAGACAAGCTGGCCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR CCA 90 bp ACAGAGGATGTTTGCCTGCCCACTCCTCTCCATGGGAAATTGTCAGGAAATAGCTGCCGACCACACCACTaGCTCTCCTTTTGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: TEDVCLPTPLHGKLSGNSCRPHH*LSFWVQ
Trigger: CTGGACCCAAAAGGAGAGCCAGTGGTGTGGTCGGCA...GCTATTTCCTGACAATTTCCCATGGAGAGGAGTGGGCAGGCAAACATCCTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR GCA 90 bp ATGTGTCTCATTTGTACAGAGGATGTTTGCCTGCCCACTCCTCTCCATGGGAAAAGCTGTCCAACCACTTaGCGACCACACCACTGGCTC +
Preference number: 4 (lower is better)
Translates to: MCLICTEDVCLPTPLHGKSCPTT*RPHHWL
Trigger: GAGCCAGTGGTGTGGTCGGCAAGTGGTTGGACAGCT...TTTCCCATGGAGAGGAGTGGGCAGGCAAACATCCTCTGTACAAATGAGACACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR CCA 90 bp TACTGTCGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTGACCATCTTAGTGAGATCTGCACGGCTTaGAAGCGAGGCACACACGCC +
Preference number: 4 (lower is better)
Translates to: YCRTGTNSKLKHRCDHLSEICTA*KRGTHA
Trigger: GGCGTGTGTGCCTCGCTTCCAAGCCGTGCAGATCTC...ACTAAGATGGTCACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCGACAGTA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR CCA 90 bp GCCCACAGTGAATGCAGACGACCTCCTTATCAATCAATTGTAGGCTGTGGGGTTTTCACCTCCATCCAGTaGAGATTGGTAAATGTCCCA +
Preference number: 4 (lower is better)
Translates to: AHSECRRPPYQSIVGCGVFTSIQ*RLVNVP
Trigger: TGGGACATTTACCAATCTCCACTGGATGGAGGTGAA...AACCCCACAGCCTACAATTGATTGATAAGGAGGTCGTCTGCATTCACTGTGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154271.2
CDS-3UTR CCA 90 bp CGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTGACCATCTTAGTCTGCATTTCACCTCCATCCAGTaGAGATTGGTAAATGTCCCA +
Preference number: 4 (lower is better)
Translates to: RTGTNSKLKHRCDHLSLHFTSIQ*RLVNVP
Trigger: TGGGACATTTACCAATCTCCACTGGATGGAGGTGAA...ATGCAGACTAAGATGGTCACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055316.10
ENSMUST00000154271.2
CDS-3UTR TCA 90 bp CATTTTAAGACAACTTTCAAGTCCAGCAGTAGTGTGATACACCTTCAGTCCCAATGTCCATTTTGTCGATaGACAAGCAGCCCTGCAAGT +
Preference number: 4 (lower is better)
Translates to: HFKTTFKSSSSVIHLQSQCPFCR*TSSPAS
Trigger: ACTTGCAGGGCTGCTTGTTCATCGACAAAATGGACA...TTGGGACTGAAGGTGTATCACACTACTGCTGGACTTGAAAGTTGTCTTAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS GCA 90 bp GCCGACCACACCACTGGCTCTCCTTTTGGGTCCAGTCCTGAGATCTaGACGGCTTGGAAGCGAGGCACACACGCCAGAAAGCCGGCGACA +
Preference number: 5 (lower is better)
Translates to: ADHTTGSPFGSSPEI*TAWKRGTHARKPAT
Trigger: TGTCGCCGGCTTTCTGGCGTGTGTGCCTCGCTTCCAAGCCGTGCAGATCTCAGGACTGGACCCAAAAGGAGAGCCAGTGGTGTGGTCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS CCA 90 bp ACCACTGGCTCTCCTTTTGGGTCCAGTCCTGAGATCTGCACGGCTTaGAAGCGAGGCACACACGCCAGAAAGCCGGCGACACTCTCGCAG +
Preference number: 5 (lower is better)
Translates to: TTGSPFGSSPEICTA*KRGTHARKPATLSQ
Trigger: CTGCGAGAGTGTCGCCGGCTTTCTGGCGTGTGTGCCTCGCTTCCAAGCCGTGCAGATCTCAGGACTGGACCCAAAAGGAGAGCCAGTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS-3UTR CAA 90 bp GCACACACTGTCTACTGTCGGACTGGAACCAATTCCAAGCTGAAGCACAGATGTGTCCCACTGTCCATTTaGTCGATGAACAAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: AHTVYCRTGTNSKLKHRCVPLSI*SMNKQP
Trigger: GGGCTGCTTGTTCATCGACAAAATGGACAGTGGGAC...ACATCTGTGCTTCAGCTTGGAATTGGTTCCAGTCCGACAGTAGACAGTGTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055316.10
ENSMUST00000154271.2
CDS-3UTR CAA 90 bp CATTTTAAGACAACTTTCAAGTCCAGCAGTAGTGTGATACACCTTCAGTCCCAAGTCCCACTGTCCATTTaGTCGATGAACAAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: HFKTTFKSSSSVIHLQSQVPLSI*SMNKQP
Trigger: GGGCTGCTTGTTCATCGACAAAATGGACAGTGGGAC...TTGGGACTGAAGGTGTATCACACTACTGCTGGACTTGAAAGTTGTCTTAAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10
CDS CCA 72 bp TCTCCTTTTGGGTCCAGTCCTGAGATCTGCACGGCTTaGAAGCGAGGCACACACGCCAGAAAGCCGGCGACA +
Preference number: 6 (lower is better)
Translates to: SPFGSSPEICTA*KRGTHARKPAT
Trigger: TGTCGCCGGCTTTCTGGCGTGTGTGCCTCGCTTCCAAGCCGTGCAGATCTCAGGACTGGACCCAAAAGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055316.10