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Pregenerated sensors for PDE6H (Mus musculus)

Ensembl gene IDs: ENSMUSG00000064330

Ensembl transcript IDs: ENSMUST00000137768.2

Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTAAGGGGTGATGGTTGTCAGGTGCCACAACTGACTCACGGTGTCTaGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTGCTGCAGTGC +
Preference number: 1 (lower is better)
Translates to: LRGDGCQVPQLTHGV*REDREATGSFLLQC
Trigger: GCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCCAGACACCGTGAGTCAGTTGTGGCACCTGACAACCATCACCCCTTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp ACGGTGTCTGGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTGCTaGAGTGCAAGCTCACATTCCCCTGCTGTCTCCTTCATCAAACAC +
Preference number: 1 (lower is better)
Translates to: TVSGGKTGRPRGVSC*SASSHSPAVSFIKH
Trigger: GTGTTTGATGAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCCAGACACCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp CTCACGGTGTCTGGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTaGTGCAGTGCAAGCTCACATTCCCCTGCTGTCTCCTTCATCAAA +
Preference number: 1 (lower is better)
Translates to: LTVSGGKTGRPRGVS*CSASSHSPAVSFIK
Trigger: TTTGATGAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCCAGACACCGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp GTCTGGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTGCTGCAGTaGAAGCTCACATTCCCCTGCTGTCTCCTTCATCAAACACTTCCA +
Preference number: 1 (lower is better)
Translates to: VWREDREATGSFLLQ*KLTFPCCLLHQTLP
Trigger: TGGAAGTGTTTGATGAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCCAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 90 bp CAGAGAGGGCATCAGACCCACTGGAGTTGGAGTCATAGGCAGTTGTaGGCCTCCCAATGGAGGTACTTGGGAACAAACTCAGTTCCTCCG +
Preference number: 1 (lower is better)
Translates to: QRGHQTHWSWSHRQL*ASQWRYLGTNSVPP
Trigger: CGGAGGAACTGAGTTTGTTCCCAAGTACCTCCATTGGGAGGCTCACAACTGCCTATGACTCCAACTCCAGTGGGTCTGATGCCCTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 90 bp GGCCATCTGTGTGACGCATCTATGCTGCAGGGCTGGCCTTCTGTGTaGCACATCTATTCCGCCTCCTCACTACGACTTCACAAACATTGG +
Preference number: 1 (lower is better)
Translates to: GHLCDASMLQGWPSV*HIYSASSLRLHKHW
Trigger: CCAATGTTTGTGAAGTCGTAGTGAGGAGGCGGAATAGATGTGTCACACAGAAGGCCAGCCCTGCAGCATAGATGCGTCACACAGATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp AGTTTTGAATTAGAGATTAATGGAGGAAGGCCCAGCCCAGGAGGGTaGCATCCTTGGGCTGGTGGCCCTGGGTTCTATAAGAAAGCACGC +
Preference number: 1 (lower is better)
Translates to: SFELEINGGRPSPGG*HPWAGGPGFYKKAR
Trigger: GCGTGCTTTCTTATAGAACCCAGGGCCACCAGCCCAAGGATGGCACCCTCCTGGGCTGGGCCTTCCTCCATTAATCTCTAATTCAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 90 bp TGTGTCATCGATCCTTCCACTGTCCCTCCTGCAGCATCATGTCCCTaGTCCTTCTCCTCCCTGGCCGTTAGATATGTCTGTGTAATGGTT +
Preference number: 1 (lower is better)
Translates to: CVIDPSTVPPAASCP*SFSSLAVRYVCVMV
Trigger: AACCATTACACAGACATATCTAACGGCCAGGGAGGAGAAGGATCAGGGACATGATGCTGCAGGAGGGACAGTGGAAGGATCGATGACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp GAGGCCACGGGGAGTTTCCTGCTGCAGTGCAAGCTCACATTCCCCTaGTGTCTCCTTCATCAAACACTTCCACTTTCAAGTTCATATTTT +
Preference number: 1 (lower is better)
Translates to: EATGSFLLQCKLTFP*CLLHQTLPLSSSYF
Trigger: AAAATATGAACTTGAAAGTGGAAGTGTTTGATGAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 90 bp TTAATTAGCTTCATGGCATCCTTTCCTGGTCTTTCAGAGGATCAGTaGAGTGGGTTGAATTCCCTGGCATCCTGTAGCTATGTGCCCTGC +
Preference number: 1 (lower is better)
Translates to: LISFMASFPGLSEDQ*SGLNSLASCSYVPC
Trigger: GCAGGGCACATAGCTACAGGATGCCAGGGAATTCAACCCACTCCACTGATCCTCTGAAAGACCAGGAAAGGATGCCATGAAGCTAATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 90 bp TCCCTGCTTCCCAACTGCCACAATGATGTGAACTGTCTCACACAATaGACTGAATCCTCTAAAAATGTTGGCCAAGATATGTGTAGTCCC +
Preference number: 1 (lower is better)
Translates to: SLLPNCHNDVNCLTQ*TESSKNVGQDMCSP
Trigger: GGGACTACACATATCTTGGCCAACATTTTTAGAGGATTCAGTCCATTGTGTGAGACAGTTCACATCATTGTGGCAGTTGGGAAGCAGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 90 bp ATTTTCAAGAAGGTAAGTGAACTAAGCAGCTGTACAGATGTTCACTaGCAGAACCAGGAAAAGCTCAGGTCTCTTAACTGTCCCTGCCAA +
Preference number: 1 (lower is better)
Translates to: IFKKVSELSSCTDVH*QNQEKLRSLNCPCQ
Trigger: TTGGCAGGGACAGTTAAGAGACCTGAGCTTTTCCTGGTTCTGCCAGTGAACATCTGTACAGCTGCTTAGTTCACTTACCTTCTTGAAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 90 bp TCGACTTCCTTCAATGATGAACTGCAATGTGGGAATGTAAGCTGGTaGACTTTCCTCCCTAACTTGCGTTCTGGTTATGGTGTTTCATCA +
Preference number: 1 (lower is better)
Translates to: STSFNDELQCGNVSW*TFLPNLRSGYGVSS
Trigger: TGATGAAACACCATAACCAGAACGCAAGTTAGGGAGGAAAGTTCACCAGCTTACATTCCCACATTGCAGTTCATCATTGAAGGAAGTCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp GACGATTTTACTGCTTCCCTAGGTGCTGTTTCTACAGTAAAGCGTTaGCTATTTCTCATTAGCAACAATGAGAATGGTAGGACTGGAGCT +
Preference number: 1 (lower is better)
Translates to: DDFTASLGAVSTVKR*LFLISNNENGRTGA
Trigger: AGCTCCAGTCCTACCATTCTCATTGTTGCTAATGAGAAATAGGCAACGCTTTACTGTAGAAACAGCACCTAGGGAAGCAGTAAAATCGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 90 bp GCCTTGCTACCTACTTCCTGTGTGGCCATGGCTCCTTTAGACATTTaGATACAGTGTTTAACACAGCTCCACTATAAAAATCAAAATTCC +
Preference number: 1 (lower is better)
Translates to: ALLPTSCVAMAPLDI*IQCLTQLHYKNQNS
Trigger: GGAATTTTGATTTTTATAGTGGAGCTGTGTTAAACACTGTATGCAAATGTCTAAAGGAGCCATGGCCACACAGGAAGTAGGTAGCAAGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 90 bp CTCCTGGGTAAAGGATTTTCCCAATTGCAAAGCAGAATTATTTCTTaGCTCTTAACACTAGACTGGCTCTTTTGTAAGCCTTGCTACCTA +
Preference number: 1 (lower is better)
Translates to: LLGKGFSQLQSRIIS*LLTLDWLFCKPCYL
Trigger: TAGGTAGCAAGGCTTACAAAAGAGCCAGTCTAGTGTTAAGAGTCAAGAAATAATTCTGCTTTGCAATTGGGAAAATCCTTTACCCAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATGGAGGGTGCCATCCTTaGGCTGGTGGCCCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHGGCHP*AGGPGF
Trigger: GAACCCAGGGCCACCAGCCCAAGGATGGCACCCTCC...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATGGCAGGACTAAGGGGTaGTGGTTGTCAGGTGCCACA +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHGRTKG*WLSGAT
Trigger: TGTGGCACCTGACAACCATCACCCCTTAGTCCTGCC...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTGTGTGACGCATCTATaGTGCAGGGCTGGCCTTCTG +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHCVTHL*CRAGLL
Trigger: CAGAAGGCCAGCCCTGCAGCATAGATGCGTCACACA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp CTGGTGGCCCTGGGTTCTATAAGAAAGCACGCCTTTAATCCCAGCACACAGGAGTTCCTGCGTGGCCTCTaGATCAGCTCCTGCCTCCGG +
Preference number: 2 (lower is better)
Translates to: LVALGSIRKHAFNPSTQEFLRGL*ISSCLR
Trigger: CCGGAGGCAGGAGCTGATGCAGAGGCCACGCAGGAA...CTCCTGTGTGCTGGGATTAAAGGCGTGCTTTCTTATAGAACCCAGGGCCACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp CTGGTGGCCCTGGGTTCTATAAGAAAGCACGCCTTTAATCCCAGCACACAGGAGGCAGCATCATGTCCCTaGTCCTTCTCCTCCCTGGCC +
Preference number: 2 (lower is better)
Translates to: LVALGSIRKHAFNPSTQEAASCP*SFSSLA
Trigger: GGCCAGGGAGGAGAAGGATCAGGGACATGATGCTGC...CTCCTGTGTGCTGGGATTAAAGGCGTGCTTTCTTATAGAACCCAGGGCCACCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTTCCACTGTCCCTCCTaGAGCATCATGTCCCTGATC +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHFHCPS*SIMSLI
Trigger: GATCAGGGACATGATGCTGCAGGAGGGACAGTGGAA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATCATCCTGTAGCTATGTaGCCTGCCCTCTCTGGTTGT +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHHPVAM*PALSGC
Trigger: ACAACCAGAGAGGGCAGGGCACATAGCTACAGGATG...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp CCATCAGCGCCTGCTCACCACCCAGGGCTGGCCATCTGTGTGACGCATCTATGCCGACTTCACAAACATTaGAAGGTGGCTGCCAGTTTC +
Preference number: 2 (lower is better)
Translates to: PSAPAHHPGLAICVTHLCRLHKH*KVAASF
Trigger: GAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCG...GCATAGATGCGTCACACAGATGGCCAGCCCTGGGTGGTGAGCAGGCGCTGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATGTCTTTAAGACTGAGTaGGAGCAGCAGGCAACCTCT +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHVFKTE*EQQATS
Trigger: AGAGGTTGCCTGCTGCTCTCACTCAGTCTTAAAGAC...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATCTCAAGGGGAGAAGGTaGCACCTACTTCAGTGGTAT +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHLKGRR*HLLQWY
Trigger: ATACCACTGAAGTAGGTGCCACCTTCTCCCCTTGAG...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp CCTCCTCACTACGACTTCACAAACATTGGAAGGTGGCTGCCAGTTTCTGTTCCACAGGGGACAGGCTCATaGGAGCTGAGTCCCTCTCCT +
Preference number: 2 (lower is better)
Translates to: PPHYDFTNIGRWLPVSVPQGTGS*ELSPSP
Trigger: AGGAGAGGGACTCAGCTCTCATGAGCCTGTCCCCTG...TGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GCTGAGCAGACCAGAGGGAGCGGGTTGACTGTAGCAAGCAGAGGTCCTAAAATTGCCTCAAGAGAGAGATaGGAGCCTTCCCTACCCATC +
Preference number: 2 (lower is better)
Translates to: AEQTRGSGLTVASRGPKIASRER*EPSLPI
Trigger: GATGGGTAGGGAAGGCTCGCATCTCTCTCTTGAGGC...AATTTTAGGACCTCTGCTTGCTACAGTCAACCCGCTCCCTCTGGTCTGCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp ACCAACCACAAGGCAGGACTAAGGGGTGATGGTTGTCAGGTGCCACAACTGACTCGGGGAGTTTCCTGCTaGAGTGCAAGCTCACATTCC +
Preference number: 2 (lower is better)
Translates to: TNHKAGLRGDGCQVPQLTRGVSC*SASSHS
Trigger: GGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCG...AGTCAGTTGTGGCACCTGACAACCATCACCCCTTAGTCCTGCCTTGTGGTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp CTGGTGGCCCTGGGTTCTATAAGAAAGCACGCCTTTAATCCCAGCACACAGGAGCTAATACAGCTGAGATaGAGGCTCCATCAGCGCCTG +
Preference number: 2 (lower is better)
Translates to: LVALGSIRKHAFNPSTQELIQLR*RLHQRL
Trigger: CAGGCGCTGATGGAGCCTGCATCTCAGCTGTATTAG...CTCCTGTGTGCTGGGATTAAAGGCGTGCTTTCTTATAGAACCCAGGGCCACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATCTGAGACGATTTTACTaGTTCCCTAGGTGCTGTTTC +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHLRRFY*FPRCCF
Trigger: GAAACAGCACCTAGGGAAGCAGTAAAATCGTCTCAG...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GCTGAGCAGACCAGAGGGAGCGGGTTGACTGTAGCAAGCAGAGGTCCTAAAATTCGCTGTGCTGTTTTCTaGCTGTCTGGGGTACGATTG +
Preference number: 2 (lower is better)
Translates to: AEQTRGSGLTVASRGPKIRCAVF*LSGVRL
Trigger: CAATCGTACCCCAGACAGGCAGAAAACAGCACAGCG...AATTTTAGGACCTCTGCTTGCTACAGTCAACCCGCTCCCTCTGGTCTGCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATCACTGGTGGCCCAGTTaGTTTAAAGATGTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHHWWPS*FKDVCS
Trigger: TGAACAAACATCTTTAAATCAACTGGGCCACCAGTG...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp CCATCAGCGCCTGCTCACCACCCAGGGCTGGCCATCTGTGTGACGCATCTATGCTTCATGCTTAAGTACTaGAGACCACAAAGCCATTTA +
Preference number: 2 (lower is better)
Translates to: PSAPAHHPGLAICVTHLCFMLKY*RPQSHL
Trigger: TAAATGGCTTTGTGGTCTTCAGTACTTAAGCATGAA...GCATAGATGCGTCACACAGATGGCCAGCCCTGGGTGGTGAGCAGGCGCTGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 90 bp TGGAGGCGGTATTTAGTTGGAGGAACTAAATCACTAGAGGCATCCTaGGGGCCTATATATCCCTGTATCCCACCTCTCTCCCTGCTTCCC +
Preference number: 2 (lower is better)
Translates to: WRRYLVGGTKSLEAS*GPIYPCIPPLSLLP
Trigger: GGGAAGCAGGGAGAGAGGTGGGATACAGGGATATATAGGCCCCAAGGATGCCTCTAGTGATTTAGTTCCTCCAACTAAATACCGCCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATGGAAAGACAGCTATGTaGACATGGCTTTTAACACAA +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHGKTAM*TWLLTQ
Trigger: TTGTGTTAAAAGCCATGTGCACATAGCTGTCTTTCC...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 90 bp TGTGTGACACATCTATTCCGCCTCCTCACTACGACTTCACAAACATaGGAAGGTGGCTGCCAGTTTCTGTTCCAGGCTCTGTGTCATCGA +
Preference number: 2 (lower is better)
Translates to: CVTHLFRLLTTTSQT*EGGCQFLFQALCHR
Trigger: TCGATGACACAGAGCCTGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGGCGGAATAGATGTGTCACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 90 bp CCTAGGCTAGGTGTTGCCCCTGCTGACCAACCCCACATCAGCCTTTaGCTTTCCAGAGAACCTTCTCCTACCTTCTTTCAGCTTAAACTT +
Preference number: 2 (lower is better)
Translates to: PRLGVAPADQPHISL*LSREPSPTFFQLKL
Trigger: AAGTTTAAGCTGAAAGAAGGTAGGAGAAGGTTCTCTGGAAAGCAAAAGGCTGATGTGGGGTTGGTCAGCAGGGGCAACACCTAGCCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 90 bp CACACACACACACACACACACACACACACACACACGTTTCCGGTTTaGTCTGTGTCATTTCCTGTTTCTCCTAGGCTAGGTGTTGCCCCT +
Preference number: 2 (lower is better)
Translates to: HTHTHTHTHTHTFPV*SVSFPVSPRLGVAP
Trigger: AGGGGCAACACCTAGCCTAGGAGAAACAGGAAATGACACAGACAAAACCGGAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTCTACAGTAAAGCGTTaGCTATTTCTCATTAGCAAC +
Preference number: 2 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHSTVKR*LFLISN
Trigger: GTTGCTAATGAGAAATAGGCAACGCTTTACTGTAGA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp GCTGAGCAGACCAGAGGGAGCGGGTTGACTGTAGCAAGCAGAGGTCCTAAAATTTGTATTGAGAGGTGGTaGAAGTGGAGGCGGTATTTA +
Preference number: 2 (lower is better)
Translates to: AEQTRGSGLTVASRGPKICIERW*KWRRYL
Trigger: TAAATACCGCCTCCACTTCCACCACCTCTCAATACA...AATTTTAGGACCTCTGCTTGCTACAGTCAACCCGCTCCCTCTGGTCTGCTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR GCA 90 bp ACTTCCTGTGTGGCCATGGCTCCTTTAGACATTTGCATACAGTGTTTAACACAGCCTGTAAGTTGCCCCTaGCTTGGAAGTAGCCCCTTA +
Preference number: 2 (lower is better)
Translates to: TSCVAMAPLDICIQCLTQPVSCP*LGSSPL
Trigger: TAAGGGGCTACTTCCAAGGCAGGGGCAACTTACAGG...CTGTGTTAAACACTGTATGCAAATGTCTAAAGGAGCCATGGCCACACAGGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp GCTGAGCAGACCAGAGGGAGCGGGTTGACTGTAGCAAGCAGAGGTCCTAAAATTCCGATAATGAAGATCTaGGATACTGAACAGATTAGT +
Preference number: 2 (lower is better)
Translates to: AEQTRGSGLTVASRGPKIPIMKI*DTEQIS
Trigger: ACTAATCTGTTCAGTATCTCAGATCTTCATTATCGG...AATTTTAGGACCTCTGCTTGCTACAGTCAACCCGCTCCCTCTGGTCTGCTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp GCTGAGCAGACCAGAGGGAGCGGGTTGACTGTAGCAAGCAGAGGTCCTAAAATTAACTGTCTCACACAATaGACTGAATCCTCTAAAAAT +
Preference number: 2 (lower is better)
Translates to: AEQTRGSGLTVASRGPKINCLTQ*TESSKN
Trigger: ATTTTTAGAGGATTCAGTCCATTGTGTGAGACAGTT...AATTTTAGGACCTCTGCTTGCTACAGTCAACCCGCTCCCTCTGGTCTGCTCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp TGTATTGAGAGGTGGTGGAAGTGGAGGCGGTATTTAGTTGGAGGAACTAAATCAACTGCCACAATGATGTaGACTGTCTCACACAATGGA +
Preference number: 2 (lower is better)
Translates to: CIERWWKWRRYLVGGTKSTATMM*TVSHNG
Trigger: TCCATTGTGTGAGACAGTTCACATCATTGTGGCAGT...TGATTTAGTTCCTCCAACTAAATACCGCCTCCACTTCCACCACCTCTCAATACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp TGTATTGAGAGGTGGTGGAAGTGGAGGCGGTATTTAGTTGGAGGAACTAAATCAACAGCTATGTGCACATaGCTTTTAACACAACTTCTG +
Preference number: 2 (lower is better)
Translates to: CIERWWKWRRYLVGGTKSTAMCT*LLTQLL
Trigger: CAGAAGTTGTGTTAAAAGCCATGTGCACATAGCTGT...TGATTTAGTTCCTCCAACTAAATACCGCCTCCACTTCCACCACCTCTCAATACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp ACTTCCTGTGTGGCCATGGCTCCTTTAGACATTTGCATACAGTGTTTAACACAGAAATCAGGATGGCTATaGTGTCAGCTGTCATTAAAA +
Preference number: 2 (lower is better)
Translates to: TSCVAMAPLDICIQCLTQKSGWL*CQLSLK
Trigger: TTTTAATGACAGCTGACATCATAGCCATCCTGATTT...CTGTGTTAAACACTGTATGCAAATGTCTAAAGGAGCCATGGCCACACAGGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR TCA 90 bp TGTATTGAGAGGTGGTGGAAGTGGAGGCGGTATTTAGTTGGAGGAACTAAATCAAGCAGAATTATTTCTTaGCTCTTAACACTAGACTGG +
Preference number: 2 (lower is better)
Translates to: CIERWWKWRRYLVGGTKSSRIIS*LLTLDW
Trigger: CCAGTCTAGTGTTAAGAGTCAAGAAATAATTCTGCT...TGATTTAGTTCCTCCAACTAAATACCGCCTCCACTTCCACCACCTCTCAATACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CCA 90 bp ACTTCCTGTGTGGCCATGGCTCCTTTAGACATTTGCATACAGTGTTTAACACAGCATTTAAACAGATTATaGAGAAGTGTGGACGACTTC +
Preference number: 2 (lower is better)
Translates to: TSCVAMAPLDICIQCLTQHLNRL*RSVDDF
Trigger: GAAGTCGTCCACACTTCTCCATAATCTGTTTAAATG...CTGTGTTAAACACTGTATGCAAATGTCTAAAGGAGCCATGGCCACACAGGAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp GAAGCAAACATAGAAGCAGTGTTCCTGCGTGGCCTCTaGATCAGCTCCTGCCTCCGGGCTCCTGCCCCGCTG +
Preference number: 3 (lower is better)
Translates to: EANIEAVFLRGL*ISSCLRAPAPL
Trigger: CAGCGGGGCAGGAGCCCGGAGGCAGGAGCTGATGCAGAGGCCACGCAGGAACACTGCTTCTATGTTTGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp GGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTGCTaGAGTGCAAGCTCACATTCCCCTGCTGTCTCCTTC +
Preference number: 3 (lower is better)
Translates to: GGKTGRPRGVSC*SASSHSPAVSF
Trigger: GAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp AATGGAGGAAGGCCCAGCCCAGGAGGGTGCCATCCTTaGGCTGGTGGCCCTGGGTTCTATAAGAAAGCACGC +
Preference number: 3 (lower is better)
Translates to: NGGRPSPGGCHP*AGGPGFYKKAR
Trigger: GCGTGCTTTCTTATAGAACCCAGGGCCACCAGCCCAAGGATGGCACCCTCCTGGGCTGGGCCTTCCTCCATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp GATGGTTGTCAGGTGCCACAACTGACTCACGGTGTCTaGAGGGAAGACAGGGAGGCCACGGGGAGTTTCCTG +
Preference number: 3 (lower is better)
Translates to: DGCQVPQLTHGV*REDREATGSFL
Trigger: CAGGAAACTCCCCGTGGCCTCCCTGTCTTCCCTCCAGACACCGTGAGTCAGTTGTGGCACCTGACAACCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp TCTGCATCAGCTCCTGCCTCCGGGCTCCTGCCCCGCTaGAGTTCCTGTCGACTTCCTTCAATGATGAACTGC +
Preference number: 3 (lower is better)
Translates to: SASAPASGLLPR*SSCRLPSMMNC
Trigger: GCAGTTCATCATTGAAGGAAGTCGACAGGAACTCCAGCGGGGCAGGAGCCCGGAGGCAGGAGCTGATGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp TCCATAGGAAGCAAACATAGAAGCAGTGTTCCTGCGTaGCCTCTGCATCAGCTCCTGCCTCCGGGCTCCTGC +
Preference number: 3 (lower is better)
Translates to: SIGSKHRSSVPA*PLHQLLPPGSC
Trigger: GCAGGAGCCCGGAGGCAGGAGCTGATGCAGAGGCCACGCAGGAACACTGCTTCTATGTTTGCTTCCTATGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp GCTCAGCGGGTAAGAGCACTGCTCTTCCGAAGGTCCTaGGTTCAAATCCCAGCAACCCCATGGTGGCTCACA +
Preference number: 3 (lower is better)
Translates to: AQRVRALLFRRS*VQIPATPWWLT
Trigger: TGTGAGCCACCATGGGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTGCTCTTACCCGCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp GAAGACAGGGAGGCCACGGGGAGTTTCCTGCTGCAGTaGAAGCTCACATTCCCCTGCTGTCTCCTTCATCAA +
Preference number: 3 (lower is better)
Translates to: EDREATGSFLLQ*KLTFPCCLLHQ
Trigger: TTGATGAAGGAGACAGCAGGGGAATGTGAGCTTGCACTGCAGCAGGAAACTCCCCGTGGCCTCCCTGTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CAA 90 bp CCATCAGCGCCTGCTCACCACCCAGGGCTGGCCATCTGTGTGACGCATCTATGCGCGGTTTGTTATAGATaGCAGAAAGCCAACCAATGG +
Preference number: 3 (lower is better)
Translates to: PSAPAHHPGLAICVTHLCAVCYR*QKANQW
Trigger: CCATTGGTTGGCTTTCTGCAATCTATAACAAACCGC...GCATAGATGCGTCACACAGATGGCCAGCCCTGGGTGGTGAGCAGGCGCTGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CAA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTCACTAGAGGCATCCTaGGGGCCTATATATCCCTGT +
Preference number: 3 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHSLEAS*GPIYPC
Trigger: ACAGGGATATATAGGCCCCAAGGATGCCTCTAGTGA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CAA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTCTGCATTACCCTCTTaGAATTGGGCACCTCTGTCG +
Preference number: 3 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHSALPS*NWAPLS
Trigger: CGACAGAGGTGCCCAATTCAAAGAGGGTAATGCAGA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp TGTGACGCATCTATGCTGCAGGGCTGGCCTTCTGTGTaGCACATCTATTCCGCCTCCTCACTACGACTTCAC +
Preference number: 3 (lower is better)
Translates to: CDASMLQGWPSV*HIYSASSLRLH
Trigger: GTGAAGTCGTAGTGAGGAGGCGGAATAGATGTGTCACACAGAAGGCCAGCCCTGCAGCATAGATGCGTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp CCGCCTCCTCACTACGACTTCACAAACATTGGAAGGTaGCTGCCAGTTTCTGTTCCAGGCTCTGTGTCATCG +
Preference number: 3 (lower is better)
Translates to: PPPHYDFTNIGR*LPVSVPGSVSS
Trigger: CGATGACACAGAGCCTGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp TACTCCAAAGACCAACCACAAGGCAGGACTAAGGGGTaGTGGTTGTCAGGTGCCACAACTGACTCACGGTGT +
Preference number: 3 (lower is better)
Translates to: YSKDQPQGRTKG*WLSGATTDSRC
Trigger: ACACCGTGAGTCAGTTGTGGCACCTGACAACCATCACCCCTTAGTCCTGCCTTGTGGTTGGTCTTTGGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp CCCTCTTTGAATTGGGCACCTCTGTCGCCCCAGTGCTaGGACGATTTTACTGCTTCCCTAGGTGCTGTTTCT +
Preference number: 3 (lower is better)
Translates to: PSLNWAPLSPQC*DDFTASLGAVS
Trigger: AGAAACAGCACCTAGGGAAGCAGTAAAATCGTCTCAGCACTGGGGCGACAGAGGTGCCCAATTCAAAGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp CTCCTCACTACGACTTCACAAACATTGGAAGGTGGCTaGCAGTTTCTGTTCCAGGCTCTGTGTCATCGATCC +
Preference number: 3 (lower is better)
Translates to: LLTTTSQTLEGG*QFLFQALCHRS
Trigger: GGATCGATGACACAGAGCCTGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp ATGCTTTTAAATTCTGATGGGCCCAGCACCAGCTTCTaGGCGGGTGAGGCAGGAAAACTGCCACAAGTTCAA +
Preference number: 3 (lower is better)
Translates to: MLLNSDGPSTSF*AGEAGKLPQVQ
Trigger: TTGAACTTGTGGCAGTTTTCCTGCCTCACCCGCCCAGAAGCTGGTGCTGGGCCCATCAGAATTTAAAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp ATCTATTCCGCCTCCTCACTACGACTTCACAAACATTaGAAGGTGGCTGCCAGTTTCTGTTCCAGGCTCTGT +
Preference number: 3 (lower is better)
Translates to: IYSASSLRLHKH*KVAASFCSRLC
Trigger: ACAGAGCCTGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGGCGGAATAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp GTTTCATGCAATTCACTGATAGCCTCAAGAGAGAGATaGGAGCCTTCCCTACCCATCCTCCTCTTTTCCTTC +
Preference number: 3 (lower is better)
Translates to: VSCNSLIASRER*EPSLPILLFSF
Trigger: GAAGGAAAAGAGGAGGATGGGTAGGGAAGGCTCGCATCTCTCTCTTGAGGCTATCAGTGAATTGCATGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp TTCATGGCATCCTTTCCTGGTCTTTCAGAGGATCAGTaGAGTGGGTTGAATTCCCTGGCATCCTGTAGCTAT +
Preference number: 3 (lower is better)
Translates to: FMASFPGLSEDQ*SGLNSLASCSY
Trigger: ATAGCTACAGGATGCCAGGGAATTCAACCCACTCCACTGATCCTCTGAAAGACCAGGAAAGGATGCCATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp CACCTCTCTCCCTGCTTCCCAACTGCCACAATGATGTaGACTGTCTCACACAATGGACTGAATCCTCTAAAA +
Preference number: 3 (lower is better)
Translates to: HLSPCFPTATMM*TVSHNGLNPLK
Trigger: TTTTAGAGGATTCAGTCCATTGTGTGAGACAGTTCACATCATTGTGGCAGTTGGGAAGCAGGGAGAGAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp GCCCCAGTGCTGAGACGATTTTACTGCTTCCCTAGGTaGTGTTTCTACAGTAAAGCGTTGCCTATTTCTCAT +
Preference number: 3 (lower is better)
Translates to: APVLRRFYCFPR*CFYSKALPISH
Trigger: ATGAGAAATAGGCAACGCTTTACTGTAGAAACAGCACCTAGGGAAGCAGTAAAATCGTCTCAGCACTGGGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp GCCATTTATTTTACCGCCGCTGTGAACCTCAAATTATaGAATTCAGGCAAATTGGAGGGTCTAGGGGGTGAG +
Preference number: 3 (lower is better)
Translates to: AIYFTAAVNLKL*NSGKLEGLGGE
Trigger: CTCACCCCCTAGACCCTCCAATTTGCCTGAATTCCATAATTTGAGGTTCACAGCGGCGGTAAAATAAATGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR-3UTR CAA 90 bp CCTCCTCACTACGACTTCACAAACATTGGAAGGTGGCTGCCAGTTTCTGTTCCAAATCCTCTAAAAATGTaGGCCAAGATATGTGTAGTC +
Preference number: 3 (lower is better)
Translates to: PPHYDFTNIGRWLPVSVPNPLKM*AKICVV
Trigger: GACTACACATATCTTGGCCAACATTTTTAGAGGATT...TGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp ATTATGGAATTCAGGCAAATTGGAGGGTCTAGGGGGTaGGTTTCATGCAATTCACTGATAGCCTCAAGAGAG +
Preference number: 3 (lower is better)
Translates to: IMEFRQIGGSRG*VSCNSLIASRE
Trigger: CTCTCTTGAGGCTATCAGTGAATTGCATGAAACTCACCCCCTAGACCCTCCAATTTGCCTGAATTCCATAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp GGACTGGAGCTTCTTAAGAATAGAGACAAAGGGGTTTaGGTTCGATGCTGTGCTGGACAGTTTTATGTCAAC +
Preference number: 3 (lower is better)
Translates to: GLELLKNRDKGV*VRCCAGQFYVN
Trigger: GTTGACATAAAACTGTCCAGCACAGCATCGAACTCAAACCCCTTTGTCTCTATTCTTAAGAAGCTCCAGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp GTGGAATTGTTTCCTGTGTGTCACTGGTGGCCCAGTTaGTTTAAAGATGTTTGTTCAGATTTCCCTGGATGT +
Preference number: 3 (lower is better)
Translates to: VELFPVCHWWPS*FKDVCSDFPGC
Trigger: ACATCCAGGGAAATCTGAACAAACATCTTTAAATCAACTGGGCCACCAGTGACACACAGGAAACAATTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp CTGAAGACCACAAAGCCATTTATTTTACCGCCGCTGTaGACCTCAAATTATGGAATTCAGGCAAATTGGAGG +
Preference number: 3 (lower is better)
Translates to: LKTTKPFILPPL*TSNYGIQANWR
Trigger: CCTCCAATTTGCCTGAATTCCATAATTTGAGGTTCACAGCGGCGGTAAAATAAATGGCTTTGTGGTCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp TTCAATGATGAACTGCAATGTGGGAATGTAAGCTGGTaGACTTTCCTCCCTAACTTGCGTTCTGGTTATGGT +
Preference number: 3 (lower is better)
Translates to: FNDELQCGNVSW*TFLPNLRSGYG
Trigger: ACCATAACCAGAACGCAAGTTAGGGAGGAAAGTTCACCAGCTTACATTCCCACATTGCAGTTCATCATTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp ACTGCTTCCCTAGGTGCTGTTTCTACAGTAAAGCGTTaGCTATTTCTCATTAGCAACAATGAGAATGGTAGG +
Preference number: 3 (lower is better)
Translates to: TASLGAVSTVKR*LFLISNNENGR
Trigger: CCTACCATTCTCATTGTTGCTAATGAGAAATAGGCAACGCTTTACTGTAGAAACAGCACCTAGGGAAGCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CCA 72 bp CCCAACTGCCACAATGATGTGAACTGTCTCACACAATaGACTGAATCCTCTAAAAATGTTGGCCAAGATATG +
Preference number: 3 (lower is better)
Translates to: PNCHNDVNCLTQ*TESSKNVGQDM
Trigger: CATATCTTGGCCAACATTTTTAGAGGATTCAGTCCATTGTGTGAGACAGTTCACATCATTGTGGCAGTTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp AGCAGAGGTCCTAAAATTCAATTCCCAACAACTACATaGGGGCTCACAACCATCTGTATAGCTACAATGTAC +
Preference number: 3 (lower is better)
Translates to: SRGPKIQFPTTT*GLTTICIATMY
Trigger: GTACATTGTAGCTATACAGATGGTTGTGAGCCCTCATGTAGTTGTTGGGAATTGAATTTTAGGACCTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR GCA 72 bp CCTACTTCCTGTGTGGCCATGGCTCCTTTAGACATTTaGATACAGTGTTTAACACAGCTCCACTATAAAAAT +
Preference number: 3 (lower is better)
Translates to: PTSCVAMAPLDI*IQCLTQLHYKN
Trigger: ATTTTTATAGTGGAGCTGTGTTAAACACTGTATGCAAATGTCTAAAGGAGCCATGGCCACACAGGAAGTAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp GACATGACTACTGCCATCTTAAAATCAGGATGGCTATaGTGTCAGCTGTCATTAAAAGACTGGGCCTTAAAA +
Preference number: 3 (lower is better)
Translates to: DMTTAILKSGWL*CQLSLKDWALK
Trigger: TTTTAAGGCCCAGTCTTTTAATGACAGCTGACATCATAGCCATCCTGATTTTAAGATGGCAGTAGTCATGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR TCA 72 bp AAAGGATTTTCCCAATTGCAAAGCAGAATTATTTCTTaGCTCTTAACACTAGACTGGCTCTTTTGTAAGCCT +
Preference number: 3 (lower is better)
Translates to: KGFSQLQSRIIS*LLTLDWLFCKP
Trigger: AGGCTTACAAAAGAGCCAGTCTAGTGTTAAGAGTCAAGAAATAATTCTGCTTTGCAATTGGGAAAATCCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR CCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATGGGGTAGTAGGGCCCTaGCTTGGTGCTGGAGGACTC +
Preference number: 4 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHGVVGP*LGAGGL
Trigger: GAGTCCTCCAGCACCAAGCCAGGGCCCTACTACCCC...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR CCA 90 bp GGGCTAGGTAGTGAGTTCCAGGCCAAGGCTTCAAAGCTCCCCCAGCCCCAACATTCATGCAGCTCCAGATaGCTGAACGCTTCCCAGGGA +
Preference number: 4 (lower is better)
Translates to: GLGSEFQAKASKLPQPQHSCSSR*LNASQG
Trigger: TCCCTGGGAAGCGTTCAGCCATCTGGAGCTGCATGA...ATGTTGGGGCTGGGGGAGCTTTGAAGCCTTGGCCTGGAACTCACTACCTAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR TCA 90 bp CTGGTGGCCCTGGGTTCTATAAGAAAGCACGCCTTTAATCCCAGCACACAGGAGTGGGAGGCTTGCTCTTaGACTGTCGAGTCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LVALGSIRKHAFNPSTQEWEACS*TVESAS
Trigger: AGAGGCAGACTCGACAGTTCAAGAGCAAGCCTCCCA...CTCCTGTGTGCTGGGATTAAAGGCGTGCTTTCTTATAGAACCCAGGGCCACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp GGTGTTGCCCCTGCTGACCAACCCCACATCAGCCTTTaGCTTTCCAGAGAACCTTCTCCTACCTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: GVAPADQPHISL*LSREPSPTFFQ
Trigger: CTGAAAGAAGGTAGGAGAAGGTTCTCTGGAAAGCAAAAGGCTGATGTGGGGTTGGTCAGCAGGGGCAACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp GGGGTGAAGCAAACCGGCACTTTACTTAGAGGGCTTTaGTGTCAGAGTCTGAACTTCACAGCCTCGGGAGTT +
Preference number: 4 (lower is better)
Translates to: GVKQTGTLLRGL*CQSLNFTASGV
Trigger: AACTCCCGAGGCTGTGAAGTTCAGACTCTGACACAAAAGCCCTCTAAGTAAAGTGCCGGTTTGCTTCACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp CATCTATTCCGCCTCCTCACTACGACTTCACAAACATaGGAAGGTGGCTGCCAGTTTCTGTTCCAGGCTCTG +
Preference number: 4 (lower is better)
Translates to: HLFRLLTTTSQT*EGGCQFLFQAL
Trigger: CAGAGCCTGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGGCGGAATAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR GCA 90 bp TGTATTGAGAGGTGGTGGAAGTGGAGGCGGTATTTAGTTGGAGGAACTAAATCATTGAACTGTCGAGTCTaGCTCTGCTTGAACTTGGGG +
Preference number: 4 (lower is better)
Translates to: CIERWWKWRRYLVGGTKSLNCRV*LCLNLG
Trigger: CCCCAAGTTCAAGCAGAGGCAGACTCGACAGTTCAA...TGATTTAGTTCCTCCAACTAAATACCGCCTCCACTTCCACCACCTCTCAATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR GCA 90 bp AACATAGGGAGTGTCCAGCCTACATTTAAACAGATTATGGAGAAGTGTGGACGATTCCTAGCCCCTCCATaGCTGGGATGTCATCTCCAA +
Preference number: 4 (lower is better)
Translates to: NIGSVQPTFKQIMEKCGRFLAPP*LGCHLQ
Trigger: TTGGAGATGACATCCCAGGCATGGAGGGGCTAGGAA...TCGTCCACACTTCTCCATAATCTGTTTAAATGTAGGCTGGACACTCCCTATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp GCCGCTGTGAACCTCAAATTATGGAATTCAGGCAAATaGGAGGGTCTAGGGGGTGAGTTTCATGCAATTCAC +
Preference number: 4 (lower is better)
Translates to: AAVNLKLWNSGK*EGLGGEFHAIH
Trigger: GTGAATTGCATGAAACTCACCCCCTAGACCCTCCAATTTGCCTGAATTCCATAATTTGAGGTTCACAGCGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp TATTTAGTTGGAGGAACTAAATCACTAGAGGCATCCTaGGGGCCTATATATCCCTGTATCCCACCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: YLVGGTKSLEAS*GPIYPCIPPLS
Trigger: GGAGAGAGGTGGGATACAGGGATATATAGGCCCCAAGGATGCCTCTAGTGATTTAGTTCCTCCAACTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
3UTR CAA 72 bp ACTGTCTCACACAATGGACTGAATCCTCTAAAAATGTaGGCCAAGATATGTGTAGTCCCTTCAAATTGTTTC +
Preference number: 4 (lower is better)
Translates to: TVSHNGLNPLKM*AKICVVPSNCF
Trigger: GAAACAATTTGAAGGGACTACACATATCTTGGCCAACATTTTTAGAGGATTCAGTCCATTGTGTGAGACAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR CAA 90 bp ACCAACCACAAGGCAGGACTAAGGGGTGATGGTTGTCAGGTGCCACAACTGACTTTGGGAGGCTTGCTCTaGAACTGTCGAGTCTGCCTC +
Preference number: 5 (lower is better)
Translates to: TNHKAGLRGDGCQVPQLTLGGLL*NCRVCL
Trigger: GAGGCAGACTCGACAGTTCAAGAGCAAGCCTCCCAA...AGTCAGTTGTGGCACCTGACAACCATCACCCCTTAGTCCTGCCTTGTGGTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR CAA 90 bp CCTCCTCACTACGACTTCACAAACATTGGAAGGTGGCTGCCAGTTTCTGTTCCACCTTTCACCCCTTTCTaGGGAGGCTTGCTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: PPHYDFTNIGRWLPVSVPPFTPF*GGLLLN
Trigger: GTTCAAGAGCAAGCCTCCCAAGAAAGGGGTGAAAGG...TGGAACAGAAACTGGCAGCCACCTTCCAATGTTTGTGAAGTCGTAGTGAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2
CDS-3UTR CAA 90 bp TTCAAGACTCAGAAAGACCAATTAGGTAAAGCAATGACACTCTCAAGAGCAGCACCTTTCTTGGGAGGCTaGCTCTTGAACTGTCGAGTC +
Preference number: 5 (lower is better)
Translates to: FKTQKDQLGKAMTLSRAAPFLGG*LLNCRV
Trigger: GACTCGACAGTTCAAGAGCAAGCCTCCCAAGAAAGG...TGCTGCTCTTGAGAGTGTCATTGCTTTACCTAATTGGTCTTTCTGAGTCTTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137768.2