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Pregenerated sensors for PDE6G (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025386

Ensembl transcript IDs: ENSMUST00000026452.3

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGTGTCAGGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTaGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGACAGGGTTTGC +
Preference number: 1 (lower is better)
Translates to: LVSGPEIVPGEAMVT*LGTQAQVWVLDRVC
Trigger: GCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCCTGACACCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR TCA 90 bp AAAAAGGACAGGAAGTGGGGCTGGGTCCCACTCCCTTCTTTCTGCTaGCCAGTGACTTCAGGTCAACAGGGTATCCTGTGGGAGGCTGTA +
Preference number: 1 (lower is better)
Translates to: KKDRKWGWVPLPSFC*PVTSGQQGILWEAV
Trigger: TACAGCCTCCCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR-3UTR CCA 90 bp GGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAGGACAGTGTCCCACCCACTCAGGCTCAGGTTTaGGTCCTGGACAGGGTTTGC +
Preference number: 2 (lower is better)
Translates to: GWSSLVSLATSPQDSVPPTQAQV*VLDRVC
Trigger: GCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGT...GGGTGGGACACTGTCCTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR-3UTR CCA 90 bp AGTGTCCCACCCCAAGACACCCATCTGGAAGGGCTACAAGACAGAGGAACTTTCAAAAAGGACAGGAAGTaGGGCTGGGTCCCACTCCCT +
Preference number: 2 (lower is better)
Translates to: SVPPQDTHLEGLQDRGTFKKDRK*GWVPLP
Trigger: AGGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTT...GAAAGTTCCTCTGTCTTGTAGCCCTTCCAGATGGGTGTCTTGGGGTGGGACACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR-3UTR GCA 90 bp TGGGAAGGTTGTTATAACGGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCAACAAAGGGGAGCCCTaGATTACAGCCACAAAAAGG +
Preference number: 2 (lower is better)
Translates to: WEGCYNGWSSLVSLATSPNKGEP*ITATKR
Trigger: CCTTTTTGTGGCTGTAATGCAGGGCTCCCCTTTGTT...GGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCCGTTATAACAACCTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR CCA 72 bp GGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTaGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGAC +
Preference number: 3 (lower is better)
Translates to: GPEIVPGEAMVT*LGTQAQVWVLD
Trigger: GTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR TCA 72 bp GGGGCTGGGTCCCACTCCCTTCTTTCTGCTGACCAGTaGCTTCAGGTCAACAGGGTATCCTGTGGGAGGCTG +
Preference number: 3 (lower is better)
Translates to: GAGSHSLLSADQ*LQVNRVSCGRL
Trigger: CAGCCTCCCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR TCA 72 bp AGGAAGTGGGGCTGGGTCCCACTCCCTTCTTTCTGCTaGCCAGTGACTTCAGGTCAACAGGGTATCCTGTGG +
Preference number: 3 (lower is better)
Translates to: RKWGWVPLPSFC*PVTSGQQGILW
Trigger: CCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCCACTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR CCA 72 bp CACCCCAGGACAGTGTCCCACCCCAAGACACCCATCTaGAAGGGCTACAAGACAGAGGAACTTTCTCACCCT +
Preference number: 3 (lower is better)
Translates to: HPRTVSHPKTPI*KGYKTEELSHP
Trigger: AGGGTGAGAAAGTTCCTCTGTCTTGTAGCCCTTCCAGATGGGTGTCTTGGGGTGGGACACTGTCCTGGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR-3UTR CAA 90 bp GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTATGTCAGGGCCTGAGATaGTCCCGGGGGAGGCCATGG +
Preference number: 3 (lower is better)
Translates to: GQGTRVCWEGCYNGWSSLCQGLR*SRGRPW
Trigger: CCATGGCCTCCCCCGGGACAATCTCAGGCCCTGACA...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
3UTR CCA 72 bp GGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATaGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAG +
Preference number: 3 (lower is better)
Translates to: GTRVCWEGCYNG*SSLVSLATSPQ
Trigger: CTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR TCA 90 bp GGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTGGCTAGGGACTCAGGCTTCGTGCAGCTCTAGGTaGTTGAAGGCCTCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: GPEIVPGEAMVTWLGTQASCSSR*LKASQG
Trigger: CCCTTGGGAGGCCTTCAATCACCTAGAGCTGCACGA...AGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR TCA 90 bp AGCCCTGCATTACAGCCACAAAAAGGACAGGAAGTGGGGCTGGGTCCCACTCCCGCAGCTCTAGGTGATTaGAGGCCTCCCAAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: SPALQPQKGQEVGLGPTPAALGD*RPPKGR
Trigger: TCTGCCCTTGGGAGGCCTTCAATCACCTAGAGCTGC...GGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTTGTGGCTGTAATGCAGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR GCA 90 bp GGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAGGACAGTGTCCCACCCTTGAACTGCCTTGTTTaGCGCTGCTTAAACTTAGGT +
Preference number: 4 (lower is better)
Translates to: GWSSLVSLATSPQDSVPPLNCLV*RCLNLG
Trigger: ACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAA...GGGTGGGACACTGTCCTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR TCA 90 bp GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTAGTCCTTTCCTGGGGGTaGCTGGTCCTCCTATCACCC +
Preference number: 4 (lower is better)
Translates to: GQGTRVCWEGCYNGWSSLVLSWG*LVLLSP
Trigger: GGGTGATAGGAGGACCAGTCACCCCCAGGAAAGGAC...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR CCA 90 bp GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTACTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGAC +
Preference number: 4 (lower is better)
Translates to: GQGTRVCWEGCYNGWSSLLLKLR*SFPGGD
Trigger: GTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAG...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS CCA 90 bp GGGCTTGCTCTTGAACTGCCTTGTTTGCCGCTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGACTGGTCCTCCTATCACCCGGGTGGC +
Preference number: 5 (lower is better)
Translates to: GLALELPCLPLLKLR*SFPGGDWSSYHPGG
Trigger: GCCACCCGGGTGATAGGAGGACCAGTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAGAGCAAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS-3UTR CAA 90 bp ACCTGGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGACAGGGTTTGCAGAGGGCTTGAACTGCCTTGTTaGCCGCTGCTTAAACTTAGG +
Preference number: 5 (lower is better)
Translates to: TWLGTQAQVWVLDRVCRGLELPC*PLLKLR
Trigger: CCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAG...CCCTCTGCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3
CDS CCA 72 bp CTTGAACTGCCTTGTTTGCCGCTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGACTGGTCCTCCTATCAC +
Preference number: 6 (lower is better)
Translates to: LELPCLPLLKLR*SFPGGDWSSYH
Trigger: GTGATAGGAGGACCAGTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026452.3