Pregenerated sensors for PDE6G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025386Ensembl transcript IDs: ENSMUST00000026452.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CTGGTGTCAGGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTaGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGACAGGGTTTGC | + |
Preference number: 1 (lower is better) Translates to: LVSGPEIVPGEAMVT*LGTQAQVWVLDRVC Trigger: GCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCCTGACACCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR TCA 90 bp | AAAAAGGACAGGAAGTGGGGCTGGGTCCCACTCCCTTCTTTCTGCTaGCCAGTGACTTCAGGTCAACAGGGTATCCTGTGGGAGGCTGTA | + |
Preference number: 1 (lower is better) Translates to: KKDRKWGWVPLPSFC*PVTSGQQGILWEAV Trigger: TACAGCCTCCCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR-3UTR CCA 90 bp | GGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAGGACAGTGTCCCACCCACTCAGGCTCAGGTTTaGGTCCTGGACAGGGTTTGC | + |
Preference number: 2 (lower is better) Translates to: GWSSLVSLATSPQDSVPPTQAQV*VLDRVC Trigger: GCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGT...GGGTGGGACACTGTCCTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR-3UTR CCA 90 bp | AGTGTCCCACCCCAAGACACCCATCTGGAAGGGCTACAAGACAGAGGAACTTTCAAAAAGGACAGGAAGTaGGGCTGGGTCCCACTCCCT | + |
Preference number: 2 (lower is better) Translates to: SVPPQDTHLEGLQDRGTFKKDRK*GWVPLP Trigger: AGGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTT...GAAAGTTCCTCTGTCTTGTAGCCCTTCCAGATGGGTGTCTTGGGGTGGGACACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR-3UTR GCA 90 bp | TGGGAAGGTTGTTATAACGGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCAACAAAGGGGAGCCCTaGATTACAGCCACAAAAAGG | + |
Preference number: 2 (lower is better) Translates to: WEGCYNGWSSLVSLATSPNKGEP*ITATKR Trigger: CCTTTTTGTGGCTGTAATGCAGGGCTCCCCTTTGTT...GGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCCGTTATAACAACCTTCCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR CCA 72 bp | GGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTaGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGAC | + |
Preference number: 3 (lower is better) Translates to: GPEIVPGEAMVT*LGTQAQVWVLD Trigger: GTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR TCA 72 bp | GGGGCTGGGTCCCACTCCCTTCTTTCTGCTGACCAGTaGCTTCAGGTCAACAGGGTATCCTGTGGGAGGCTG | + |
Preference number: 3 (lower is better) Translates to: GAGSHSLLSADQ*LQVNRVSCGRL Trigger: CAGCCTCCCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR TCA 72 bp | AGGAAGTGGGGCTGGGTCCCACTCCCTTCTTTCTGCTaGCCAGTGACTTCAGGTCAACAGGGTATCCTGTGG | + |
Preference number: 3 (lower is better) Translates to: RKWGWVPLPSFC*PVTSGQQGILW Trigger: CCACAGGATACCCTGTTGACCTGAAGTCACTGGTCAGCAGAAAGAAGGGAGTGGGACCCAGCCCCACTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR CCA 72 bp | CACCCCAGGACAGTGTCCCACCCCAAGACACCCATCTaGAAGGGCTACAAGACAGAGGAACTTTCTCACCCT | + |
Preference number: 3 (lower is better) Translates to: HPRTVSHPKTPI*KGYKTEELSHP Trigger: AGGGTGAGAAAGTTCCTCTGTCTTGTAGCCCTTCCAGATGGGTGTCTTGGGGTGGGACACTGTCCTGGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR-3UTR CAA 90 bp | GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTATGTCAGGGCCTGAGATaGTCCCGGGGGAGGCCATGG | + |
Preference number: 3 (lower is better) Translates to: GQGTRVCWEGCYNGWSSLCQGLR*SRGRPW Trigger: CCATGGCCTCCCCCGGGACAATCTCAGGCCCTGACA...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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3UTR CCA 72 bp | GGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATaGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAG | + |
Preference number: 3 (lower is better) Translates to: GTRVCWEGCYNG*SSLVSLATSPQ Trigger: CTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR TCA 90 bp | GGGCCTGAGATTGTCCCGGGGGAGGCCATGGTAACCTGGCTAGGGACTCAGGCTTCGTGCAGCTCTAGGTaGTTGAAGGCCTCCCAAGGG | + |
Preference number: 4 (lower is better) Translates to: GPEIVPGEAMVTWLGTQASCSSR*LKASQG Trigger: CCCTTGGGAGGCCTTCAATCACCTAGAGCTGCACGA...AGCCTGAGTCCCTAGCCAGGTTACCATGGCCTCCCCCGGGACAATCTCAGGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR TCA 90 bp | AGCCCTGCATTACAGCCACAAAAAGGACAGGAAGTGGGGCTGGGTCCCACTCCCGCAGCTCTAGGTGATTaGAGGCCTCCCAAGGGCAGA | + |
Preference number: 4 (lower is better) Translates to: SPALQPQKGQEVGLGPTPAALGD*RPPKGR Trigger: TCTGCCCTTGGGAGGCCTTCAATCACCTAGAGCTGC...GGGAGTGGGACCCAGCCCCACTTCCTGTCCTTTTTGTGGCTGTAATGCAGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR GCA 90 bp | GGATGGAGTAGCTTAGTCTCTCTTGCCACCTCACCCCAGGACAGTGTCCCACCCTTGAACTGCCTTGTTTaGCGCTGCTTAAACTTAGGT | + |
Preference number: 4 (lower is better) Translates to: GWSSLVSLATSPQDSVPPLNCLV*RCLNLG Trigger: ACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAA...GGGTGGGACACTGTCCTGGGGTGAGGTGGCAAGAGAGACTAAGCTACTCCATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR TCA 90 bp | GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTAGTCCTTTCCTGGGGGTaGCTGGTCCTCCTATCACCC | + |
Preference number: 4 (lower is better) Translates to: GQGTRVCWEGCYNGWSSLVLSWG*LVLLSP Trigger: GGGTGATAGGAGGACCAGTCACCCCCAGGAAAGGAC...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR CCA 90 bp | GGACAAGGGACAAGAGTATGTTGGGAAGGTTGTTATAACGGATGGAGTAGCTTACTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGAC | + |
Preference number: 4 (lower is better) Translates to: GQGTRVCWEGCYNGWSSLLLKLR*SFPGGD Trigger: GTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAG...TAAGCTACTCCATCCGTTATAACAACCTTCCCAACATACTCTTGTCCCTTGTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS CCA 90 bp | GGGCTTGCTCTTGAACTGCCTTGTTTGCCGCTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGACTGGTCCTCCTATCACCCGGGTGGC | + |
Preference number: 5 (lower is better) Translates to: GLALELPCLPLLKLR*SFPGGDWSSYHPGG Trigger: GCCACCCGGGTGATAGGAGGACCAGTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAGAGCAAGCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS-3UTR CAA 90 bp | ACCTGGCTAGGGACTCAGGCTCAGGTTTGGGTCCTGGACAGGGTTTGCAGAGGGCTTGAACTGCCTTGTTaGCCGCTGCTTAAACTTAGG | + |
Preference number: 5 (lower is better) Translates to: TWLGTQAQVWVLDRVCRGLELPC*PLLKLR Trigger: CCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAG...CCCTCTGCAAACCCTGTCCAGGACCCAAACCTGAGCCTGAGTCCCTAGCCAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |
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CDS CCA 72 bp | CTTGAACTGCCTTGTTTGCCGCTGCTTAAACTTAGGTaGTCCTTTCCTGGGGGTGACTGGTCCTCCTATCAC | + |
Preference number: 6 (lower is better) Translates to: LELPCLPLLKLR*SFPGGDWSSYH Trigger: GTGATAGGAGGACCAGTCACCCCCAGGAAAGGACCACCTAAGTTTAAGCAGCGGCAAACAAGGCAGTTCAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026452.3 |