Pregenerated sensors for PDE6D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026239Ensembl transcript IDs: ENSMUST00000027444.15, ENSMUST00000143674.8, ENSMUST00000146220.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGAAATCCACCTGTCTCTGCCTCCCGAGTGCTGGGATTGAAGGTGTaGGCCACCACTGCCCGGCCTGTTTGTTCTTTCTACTTTTCTGCC | + |
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Preference number: 1 (lower is better) Translates to: RNPPVSASRVLGLKV*ATTARPVCSFYFSA Trigger: GGCAGAAAAGTAGAAAGAACAAACAGGCCGGGCAGTGGTGGCCCACACCTTCAATCCCAGCACTCGGGAGGCAGAGACAGGTGGATTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
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| 3UTR CCA 90 bp | GTCTCTATGATGACATTGCCCGTTAGGACGCTGGCGGGCATCATCTaGGACTCAGGCGCTGCTTCTATCAAGGACTGCCAGGTGTTTGTG | + |
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Preference number: 1 (lower is better) Translates to: VSMMTLPVRTLAGII*DSGAASIKDCQVFV Trigger: CACAAACACCTGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAGATGATGCCCGCCAGCGTCCTAACGGGCAATGTCATCATAGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR GCA 90 bp | CTGGCGGGCATCATCTGGGACTCAGGCGCTGCTTCTATCAAGGACTaGCAGGTGTTTGTGGAGTTAGGGATCACAAAGCCAAACTCGAAG | + |
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Preference number: 1 (lower is better) Translates to: LAGIIWDSGAASIKD*QVFVELGITKPNSK Trigger: CTTCGAGTTTGGCTTTGTGATCCCTAACTCCACAAACACCTGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAGATGATGCCCGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR TCA 90 bp | CAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTTGAAGGAGTaGGTCAGCTGGAGTATCCCAGTCAGGTGTGCAGAGAACAAGTTC | + |
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Preference number: 1 (lower is better) Translates to: QSWFPGAQVGSVLKE*VSWSIPVRCAENKF Trigger: GAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR TCA 90 bp | CGTCTATTCAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTTaGAGGAGTGAGTCAGCTGGAGTATCCCAGTCAGGTGTGCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: RLFRAGFLVHRWVLC*RSESAGVSQSGVQR Trigger: TCTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 90 bp | GTTTTGGGAGAAAAGCCACTGGCCGTCTATTCAGAGCTGGTTTCCTaGTGCACAGGTGGGTTCTGTGTTGAAGGAGTGAGTCAGCTGGAG | + |
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Preference number: 1 (lower is better) Translates to: VLGEKPLAVYSELVS*CTGGFCVEGVSQLE Trigger: CTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGCTTTTCTCCCAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 90 bp | CATGTTTGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTaGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGAGGTTTTGGG | + |
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Preference number: 1 (lower is better) Translates to: HVCARKESRLIPAFG*GWEFSLVSEDGGFG Trigger: CCCAAAACCTCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAACATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR GCA 90 bp | TTCTGTGTTGAAGGAGTGAGTCAGCTGGAGTATCCCAGTCAGGTGTaGAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTT | + |
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Preference number: 1 (lower is better) Translates to: FCVEGVSQLEYPSQV*REQVQLPPAPGQIL Trigger: AAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR GCA 90 bp | TTGGGAGAAAAGCCACTGGCCGTCTATTCAGAGCTGGTTTCCTGGTaGACAGGTGGGTTCTGTGTTGAAGGAGTGAGTCAGCTGGAGTAT | + |
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Preference number: 1 (lower is better) Translates to: LGEKPLAVYSELVSW*TGGFCVEGVSQLEY Trigger: ATACTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGCTTTTCTCCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 90 bp | TGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTGGGGTTaGGAGTTTAGTCTTGTCAGTGAAGATGGAGGTTTTGGGAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: CARKESRLIPAFGWG*EFSLVSEDGGFGRK Trigger: TTTTCTCCCAAAACCTCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGCGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 90 bp | CCCGGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTaGAGTCCCGCCTGCCTGAATGCCTGTTCTAAGATACATTTTGAA | + |
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Preference number: 1 (lower is better) Translates to: PGLFVLSTFLPVSRT*SPACLNACSKIHFE Trigger: TTCAAAATGTATCTTAGAACAGGCATTCAGGCAGGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCCGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
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| 3UTR-3UTR CCA 90 bp | AGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGGCGCAGCGTGGCTCCTaGGAGGGTTTGTTCCCATGT | + |
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Preference number: 2 (lower is better) Translates to: RRSVAPGRVCSHVCARKEAQRGS*EGLFPC Trigger: ACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGC...CTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR TCA 90 bp | CTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGAGAGGAGGCAGGCAGGTaGCAGGCGCAGCGTGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: LIPAFGWGWEFSLVSEDGEEAGR*QAQRGS Trigger: GGAGCCACGCTGCGCCTGTCACCTGCCTGCCTCCTC...TCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGAGCTGGTTTCCTGGTaGACAGGTGGGTTCTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: QAQRGSWEGLFPCLRQEGELVSW*TGGFCV Trigger: AACACAGAACCCACCTGTGCACCAGGAAACCAGCTC...TCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | CGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGGTTTGTTCCCATGTTTaGGCCAGGAAGGAGTCGAGG | + |
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Preference number: 2 (lower is better) Translates to: RSVAPGRVCSHVCARKESVCSHV*ARKESR Trigger: CCTCGACTCCTTCCTGGCGCAAACATGGGAACAAAC...CGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGAGAGCTGGTTTCCTGGTaGACAGGTGGGTTCTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: AAWLLGGFVPMFAPGRSRELVSW*TGGFCV Trigger: AACACAGAACCCACCTGTGCACCAGGAAACCAGCTC...TCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGCAGGTGACAGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCTATCCCAGTCAGGTGTaGAGAGAACAAGTTCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: QAGDRRSVAPGRVCSHVCYPSQV*REQVQL Trigger: AAGCTGAACTTGTTCTCTGCACACCTGACTGGGATA...GCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCTGTCACCTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTCAGAGCTGGTTTCCTaGTGCACAGGTGGGTTCTGT | + |
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Preference number: 2 (lower is better) Translates to: PGRSRGLSLPLAGVGSLVSELVS*CTGGFC Trigger: ACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGA...GACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGCAATTCTCGAGACACTaGCTTGCACTTGAGGATTTT | + |
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Preference number: 2 (lower is better) Translates to: TGAAWLLGGFVPMFAPGRQFSRH*LALEDF Trigger: AAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTG...CCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR CCA 90 bp | GTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGAGTGCCTGTGAGTAGGACCTaGAGTCCCGCCTGCCTGAAT | + |
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Preference number: 2 (lower is better) Translates to: VDQAVFELRNPPVSASRVPVSRT*SPACLN Trigger: ATTCAGGCAGGCGGGACTCCAGGTCCTACTCACAGG...CACTCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
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| 3UTR CAA 90 bp | GTTCCCATGTTTGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTaGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGAGGTT | + |
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Preference number: 2 (lower is better) Translates to: VPMFAPGRSRGLSLP*AGVGSLVLSVKMEV Trigger: AACCTCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAACATGGGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCACTGGCCGTCTATTCAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGACACTGCCTTGCACTTaGGGATTTTCTTGGGCACAC | + |
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Preference number: 2 (lower is better) Translates to: KATGRLFRAGFLVHRWVLTLPCT*GFSWAH Trigger: GTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGT...CAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR CCA 90 bp | TCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGCCTTTGGCTGGGGTTaGGAGTTTAGTCTTGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: SRLIPAFGWGWEFSLVSEAFGWG*EFSLVS Trigger: ACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGC...TTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR CCA 90 bp | TCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAATCCCTGCCTTTGGCTaGGGTTGGGAGTTTAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: SRLIPAFGWGWEFSLVSEIPAFG*GWEFSL Trigger: AAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGAT...TTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTCCATTTGTTCTGCTaGAGAAAAGTTCAATTCTCG | + |
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Preference number: 2 (lower is better) Translates to: PGRSRGLSLPLAGVGSLVFHLFC*RKVQFS Trigger: CGAGAATTGAACTTTTCTTCAGCAGAACAAATGGAA...GACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTAGGCATTGTCCTTTaGAGTAAACTTTTTGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: WEGLFPCLRQEGVEAYPCLGIVL*SKLFVP Trigger: TGGAACAAAAAGTTTACTTCAAAGGACAATGCCTAG...GCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | AACATAGAAAAGCCTCACTTTGGATGTGCTGACAAGAAGATCATCGTCAAAGAAGTCGAGGCTTATCCCTaGCTTTGGCTGGGGTTGGGA | + |
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Preference number: 2 (lower is better) Translates to: NIEKPHFGCADKKIIVKEVEAYP*LWLGLG Trigger: TCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGAC...TTCTTTGACGATGATCTTCTTGTCAGCACATCCAAAGTGAGGCTTTTCTATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR TCA 90 bp | TTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGAGGTTTTGGGAGAATCACTTTGGATGTGCTaGCAAGAAGATCATCGTCAA | + |
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Preference number: 2 (lower is better) Translates to: LAGVGSLVLSVKMEVLGESLWMC*QEDHRQ Trigger: TTGACGATGATCTTCTTGTCAGCACATCCAAAGTGA...TTCTCCCAAAACCTCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR GCA 90 bp | AACATAGAAAAGCCTCACTTTGGATGTGCTGACAAGAAGATCATCGTCAAAGAAGCTTCTATCAAGGACTaGCAGGTGTTTGTGGAGTTA | + |
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Preference number: 2 (lower is better) Translates to: NIEKPHFGCADKKIIVKEASIKD*QVFVEL Trigger: TAACTCCACAAACACCTGGCAGTCCTTGATAGAAGC...TTCTTTGACGATGATCTTCTTGTCAGCACATCCAAAGTGAGGCTTTTCTATGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | GCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGGCTCCTGGGAGGGTTaGTTCCCATGTTTGCGCCAG | + |
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Preference number: 3 (lower is better) Translates to: AQRGSWEGLFPCLRQEGVGSWEG*FPCLRQ Trigger: CTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCC...GACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR GCA 72 bp | CGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTaGGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: RSVAPGRVCSHV*ARKESRLIPAF Trigger: AAAGGCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 72 bp | CCTGTCTCTGCCTCCCGAGTGCTGGGATTGAAGGTGTaGGCCACCACTGCCCGGCCTGTTTGTTCTTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: PVSASRVLGLKV*ATTARPVCSFY Trigger: GTAGAAAGAACAAACAGGCCGGGCAGTGGTGGCCCACACCTTCAATCCCAGCACTCGGGAGGCAGAGACAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGGTGAAGATGGAGGTTTaGGGAGAAAAGCCACTGGCC | + |
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Preference number: 3 (lower is better) Translates to: RRSVAPGRVCSHVCARKEVKMEV*GEKPLA Trigger: GGCCAGTGGCTTTTCTCCCAAAACCTCCATCTTCAC...CTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR GCA 72 bp | GAAGGAGTGAGTCAGCTGGAGTATCCCAGTCAGGTGTaGAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGC | + |
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Preference number: 3 (lower is better) Translates to: EGVSQLEYPSQV*REQVQLPPAPG Trigger: GCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 72 bp | ATGACATTGCCCGTTAGGACGCTGGCGGGCATCATCTaGGACTCAGGCGCTGCTTCTATCAAGGACTGCCAG | + |
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Preference number: 3 (lower is better) Translates to: MTLPVRTLAGII*DSGAASIKDCQ Trigger: CTGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAGATGATGCCCGCCAGCGTCCTAACGGGCAATGTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | GCTGGCGGGCATCATCTGGGACTCAGGCGCTGCTTCTATCAAGGACTGCCAGGTTCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: AGGHHLGLRRCFYQGLPGSRDTA*HLRIFL Trigger: CAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGA...ACCTGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAGATGATGCCCGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | GCAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTTAGAAGTGCACGGCTTATCCCTGCCTTaGGCTGGGGTTGGGAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: AENKFSFLLPPAKFLEVHGLSLP*AGVGSL Trigger: TAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCC...GTGCACTTCTAAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | GCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTGACACTGCCTTGCACTaGAGGATTTTCTTGGGCACA | + |
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Preference number: 3 (lower is better) Translates to: ARKESRLIPAFGWGWEFSDTALH*RIFLGT Trigger: TGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTC...ACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
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| 3UTR TCA 72 bp | TTTCCTGGTGCACAGGTGGGTTCTGTGTTGAAGGAGTaGGTCAGCTGGAGTATCCCAGTCAGGTGTGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: FPGAQVGSVLKE*VSWSIPVRCAE Trigger: CTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR TCA 72 bp | AGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTTaGAGGAGTGAGTCAGCTGGAGTATCCCAGTCAGGT | + |
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Preference number: 3 (lower is better) Translates to: RAGFLVHRWVLC*RSESAGVSQSG Trigger: ACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 72 bp | GCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTTGGCTaGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGA | + |
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Preference number: 3 (lower is better) Translates to: ARKESRLIPAFG*GWEFSLVSEDG Trigger: TCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | TCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGGCTTATCCCTGCCTTaGGCTGGGGTTGGGAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: SRLIPAFGWGWEFSLVSEGLSLP*AGVGSL Trigger: TAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCC...TTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR CCA 72 bp | GAAAAGCCACTGGCCGTCTATTCAGAGCTGGTTTCCTaGTGCACAGGTGGGTTCTGTGTTGAAGGAGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: EKPLAVYSELVS*CTGGFCVEGVS Trigger: ACTCACTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
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| 3UTR-3UTR CAA 90 bp | GTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGAGTGCACTGCCCGGCCTGTTaGTTCTTTCTACTTTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: VDQAVFELRNPPVSASRVHCPAC*FFLLFC Trigger: GCAGAAAAGTAGAAAGAACAAACAGGCCGGGCAGTG...CACTCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
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| 3UTR GCA 72 bp | ATCATCTGGGACTCAGGCGCTGCTTCTATCAAGGACTaGCAGGTGTTTGTGGAGTTAGGGATCACAAAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: IIWDSGAASIKD*QVFVELGITKP Trigger: TGGCTTTGTGATCCCTAACTCCACAAACACCTGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAGATGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| 3UTR GCA 72 bp | ACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCGCCTaGCTGAATGCCTGTTCTAAGATACATTTTGAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: TFLPVSRTWSPA*LNACSKIHFEV Trigger: GACTTCAAAATGTATCTTAGAACAGGCATTCAGGCAGGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| 3UTR TCA 72 bp | AAGAAAAGTTCAATTCTCGAGACACTGCCTTGCACTTaGGGATTTTCTTGGGCACACGGGCTGTCTAGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: KKSSILETLPCT*GFSWAHGLSSS Trigger: GCTACTAGACAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| 3UTR CCA 72 bp | TTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTaGAGTCCCGCCTGCCTGAATGCCTGTTCTAAGATA | + |
|
Preference number: 3 (lower is better) Translates to: FVLSTFLPVSRT*SPACLNACSKI Trigger: TATCTTAGAACAGGCATTCAGGCAGGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| 3UTR TCA 72 bp | CAAACTCGAAGAACCACTCTTCTAGGCATTGTCCTTTaGAGTAAACTTTTTGTTCCAGGCGGAATTTTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: QTRRTTLLGIVL*SKLFVPGGIFP Trigger: TGGAAAAATTCCGCCTGGAACAAAAAGTTTACTTCAAAGGACAATGCCTAGAAGAGTGGTTCTTCGAGTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| 3UTR TCA 72 bp | TCTCTCAAACATAGAAAAGCCTCACTTTGGATGTGCTaGCAAGAAGATCATCGTCAAAGAACTTTGTCTCTA | + |
|
Preference number: 3 (lower is better) Translates to: SLKHRKASLWMC*QEDHRQRTLSL Trigger: TAGAGACAAAGTTCTTTGACGATGATCTTCTTGTCAGCACATCCAAAGTGAGGCTTTTCTATGTTTGAGAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| CDS-3UTR CCA 90 bp | GCTGGAGTATCCCAGTCAGGTGTGCAGAGAACAAGTTCAGCTTCCTCCTGCCCCTGCCCGTTAGGACGCTaGCGGGCATCATCTGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: AGVSQSGVQRTSSASSCPCPLGR*RASSGT Trigger: AGTCCCAGATGATGCCCGCCAGCGTCCTAACGGGCA...GGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR CCA 90 bp | GAGTCAGCTGGAGTATCCCAGTCAGGTGTGCAGAGAACAAGTTCAGCTTCCTCCCTCTCAGGATATCCCTaGCCCGCTCGTCCTTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ESAGVSQSGVQRTSSASSLSGYP*PARPWL Trigger: CAGCCAAGGACGAGCGGGCCAGGGATATCCTGAGAG...GGAGGAAGCTGAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGCTGACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR CCA 90 bp | CTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCGCCTGCCTCTCAGGATATCCCTaGCCCGCTCGTCCTTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LFVLSTFLPVSRTWSPACLSGYP*PARPWL Trigger: CAGCCAAGGACGAGCGGGCCAGGGATATCCTGAGAG...GCAGGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR TCA 90 bp | GCCACTGGCCGTCTATTCAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTACACTGCCTTGCACTTaGGGATTTTCTTGGGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: ATGRLFRAGFLVHRWVLCTLPCT*GFSWAH Trigger: GTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGT...ACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR GCA 90 bp | CAGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGACAATTCTCGAGACACTaGCTTGCACTTGAGGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: QAQRGSWEGLFPCLRQEGQFSRH*LALEDF Trigger: AAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTG...TCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR GCA 90 bp | GCAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTTAGAAGTGCACCTGGGACTCAGGCGCTaGTTCTATCAAGGACTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: AENKFSFLLPPAKFLEVHLGLRR*FYQGLP Trigger: TGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAG...GTGCACTTCTAAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| 3UTR CAA 72 bp | TTTGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCCTTaGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FAPGRSRGLSLP*AGVGSLVLSVK Trigger: CTTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR GCA 90 bp | GTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGAGTGCTGGGACTCAGGCGCTaGTTCTATCAAGGACTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: VDQAVFELRNPPVSASRVLGLRR*FYQGLP Trigger: TGGCAGTCCTTGATAGAAGCAGCGCCTGAGTCCCAG...CACTCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR CCA 90 bp | TTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAGATGGAGGTTTTGGGAGAACTCTCAGGATATCCCTaGCCCGCTCGTCCTTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LAGVGSLVLSVKMEVLGELSGYP*PARPWL Trigger: CAGCCAAGGACGAGCGGGCCAGGGATATCCTGAGAG...TTCTCCCAAAACCTCCATCTTCACTGACAAGACTAAACTCCCAACCCCAGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR TCA 90 bp | CCCGGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCACACTGCCTTGCACTTaGGGATTTTCTTGGGCACAC | + |
|
Preference number: 4 (lower is better) Translates to: PGLFVLSTFLPVSRTWSPTLPCT*GFSWAH Trigger: GTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGT...GGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCCGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR GCA 90 bp | TCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGAGGCTTATCCCAGGTCTTCTGTTCCTTaGCAGAGTATCTTCCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: SWEGLFPCLRQEGVEAYPRSSVP*QSIFPV Trigger: AACAGGGAAGATACTCTGGCAAGGAACAGAAGACCT...GGGATAAGCCTCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR GCA 90 bp | GCTGGAGTATCCCAGTCAGGTGTGCAGAGAACAAGTTCAGCTTCCTCCTGCCCCGCTTCTATCAAGGACTaGCAGGTGTTTGTGGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: AGVSQSGVQRTSSASSCPASIKD*QVFVEL Trigger: TAACTCCACAAACACCTGGCAGTCCTTGATAGAAGC...GGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACACCTGACTGGGATACTCCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR TCA 90 bp | GCCACTGGCCGTCTATTCAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTTCATCCAATTTAGTTTaGAGCCTCTCAGGATATCCC | + |
|
Preference number: 4 (lower is better) Translates to: ATGRLFRAGFLVHRWVLCSSNLV*SLSGYP Trigger: GGGATATCCTGAGAGGCTTCAAACTAAATTGGATGA...ACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGGCCAGTGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR TCA 90 bp | GCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGATTCCATTTGTTCTGCTaGAGAAAAGTTCAATTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: AAWLLGGFVPMFAPGRSRFHLFC*RKVQFS Trigger: CGAGAATTGAACTTTTCTTCAGCAGAACAAATGGAA...TCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR GCA 90 bp | CCACCACTGCCCGGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCGCTTCTATCAAGGACTaGCAGGTGTTTGTGGAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: PPLPGLFVLSTFLPVSRTASIKD*QVFVEL Trigger: TAACTCCACAAACACCTGGCAGTCCTTGATAGAAGC...GGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCCGGGCAGTGGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| 3UTR CAA 72 bp | AGATCATCGTCAAAGAACTTTGTCTCTATGATGACATaGCCCGTTAGGACGCTGGCGGGCATCATCTGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: RSSSKNFVSMMT*PVRTLAGIIWD Trigger: GTCCCAGATGATGCCCGCCAGCGTCCTAACGGGCAATGTCATCATAGAGACAAAGTTCTTTGACGATGATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| CDS-3UTR TCA 90 bp | GGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCGCCTCATCCAATTTAGTTTaGAGCCTCTCAGGATATCCC | + |
|
Preference number: 4 (lower is better) Translates to: GLFVLSTFLPVSRTWSPASSNLV*SLSGYP Trigger: GGGATATCCTGAGAGGCTTCAAACTAAATTGGATGA...GGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR GCA 90 bp | TCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAAAGGTCTTCTGTTCCTTaGCAGAGTATCTTCCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: SRLIPAFGWGWEFSLVSERSSVP*QSIFPV Trigger: AACAGGGAAGATACTCTGGCAAGGAACAGAAGACCT...TTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR GCA 90 bp | GTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGAGTGAGGTCTTCTGTTCCTTaGCAGAGTATCTTCCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: VDQAVFELRNPPVSASRVRSSVP*QSIFPV Trigger: AACAGGGAAGATACTCTGGCAAGGAACAGAAGACCT...CACTCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR GCA 90 bp | GGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCGCCCAATTCTCGAGACACTaGCTTGCACTTGAGGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: GLFVLSTFLPVSRTWSPAQFSRH*LALEDF Trigger: AAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTG...GGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| 3UTR CAA 72 bp | TCTGCTGAAGAAAAGTTCAATTCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTGGGCACACGGGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SAEEKFNSRDTA*HLRIFLGTRAV Trigger: GACAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTCAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143674.8 |
||
| CDS-3UTR TCA 90 bp | TGTGCAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTTAGAAGTGTCATCCAATTTAGTTTaGAGCCTCTCAGGATATCCC | + |
|
Preference number: 4 (lower is better) Translates to: CAENKFSFLLPPAKFLEVSSNLV*SLSGYP Trigger: GGGATATCCTGAGAGGCTTCAAACTAAATTGGATGA...CACTTCTAAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR TCA 90 bp | TGTGCAGAGAACAAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTTAGAAGTGTCACTTTGGATGTGCTaGCAAGAAGATCATCGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: CAENKFSFLLPPAKFLEVSLWMC*QEDHRQ Trigger: TTGACGATGATCTTCTTGTCAGCACATCCAAAGTGA...CACTTCTAAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTTGTTCTCTGCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR TCA 90 bp | CCCGGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCCTAGGCATTGTCCTTTaGAGTAAACTTTTTGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PGLFVLSTFLPVSRTWSPLGIVL*SKLFVP Trigger: TGGAACAAAAAGTTTACTTCAAAGGACAATGCCTAG...GGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCCGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR TCA 90 bp | TTTGTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGATTCCATTTGTTCTGCTaGAGAAAAGTTCAATTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: FVDQAVFELRNPPVSASRFHLFC*RKVQFS Trigger: CGAGAATTGAACTTTTCTTCAGCAGAACAAATGGAA...TCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTACAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR TCA 90 bp | AAGTTCAGCTTCCTCCTGCCCCCGGCCAAATTCTTAGAAGTGCACACAAATTCTCTAGGCATTGTCCTTTaGAGTAAACTTTTTGTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: KFSFLLPPAKFLEVHTNSLGIVL*SKLFVP Trigger: TGGAACAAAAAGTTTACTTCAAAGGACAATGCCTAG...AGAATTTGTGTGCACTTCTAAGAATTTGGCCGGGGGCAGGAGGAAGCTGAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR CAA 90 bp | TGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGAGTCGAGGCTTATCCCTGCGACACTGCCTTGCACTaGAGGATTTTCTTGGGCACA | + |
|
Preference number: 5 (lower is better) Translates to: WEGLFPCLRQEGVEAYPCDTALH*RIFLGT Trigger: TGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTC...GCAGGGATAAGCCTCGACTCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR CAA 90 bp | CAGGCGCAGCGTGGCTCCTGGGAGGGTTTGTTCCCATGTTTGCGCCAGGAAGGATTCATCCAATTTAGTTaGAAGCCTCTCAGGATATCC | + |
|
Preference number: 5 (lower is better) Translates to: QAQRGSWEGLFPCLRQEGFIQFS*KPLRIS Trigger: GGATATCCTGAGAGGCTTCAAACTAAATTGGATGAA...TCCTTCCTGGCGCAAACATGGGAACAAACCCTCCCAGGAGCCACGCTGCGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR CAA 90 bp | CCGTCTATTCAGAGCTGGTTTCCTGGTGCACAGGTGGGTTCTGTGTTGAAGGAGCACTTGAGGATTTTCTaGGGCACACGGGCTTCATGT | + |
|
Preference number: 5 (lower is better) Translates to: PSIQSWFPGAQVGSVLKEHLRIF*GTRASC Trigger: ACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTG...CTCCTTCAACACAGAACCCACCTGTGCACCAGGAAACCAGCTCTGAATAGACGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR CAA 90 bp | CCACCACTGCCCGGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCCACTTGAGGATTTTCTaGGGCACACGGGCTTCATGT | + |
|
Preference number: 5 (lower is better) Translates to: PPLPGLFVLSTFLPVSRTHLRIF*GTRASC Trigger: ACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTG...GGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCCGGGCAGTGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR CAA 90 bp | GTAGACCAGGCTGTTTTTGAACTCAGAAATCCACCTGTCTCTGCCTCCCGAGTGGACACTGCCTTGCACTaGAGGATTTTCTTGGGCACA | + |
|
Preference number: 5 (lower is better) Translates to: VDQAVFELRNPPVSASRVDTALH*RIFLGT Trigger: TGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTC...CACTCGGGAGGCAGAGACAGGTGGATTTCTGAGTTCAAAAACAGCCTGGTCTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS-3UTR CAA 90 bp | GGCCTGTTTGTTCTTTCTACTTTTCTGCCTGTGAGTAGGACCTGGAGTCCCGCCTCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GLFVLSTFLPVSRTWSPASRDTA*HLRIFL Trigger: CAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGA...GGCGGGACTCCAGGTCCTACTCACAGGCAGAAAAGTAGAAAGAACAAACAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS TCA 90 bp | GTTCTGCTGAAGAAAAGTTCAATTCTCGAGACACTGCCTTGCACTTaGGGATTTTCTTGGGCACACGGGCTTCATGTTCCACACCAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: VLLKKSSILETLPCT*GFSWAHGLHVPHQG Trigger: TCCCTGGTGTGGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTCAGCAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
||
| CDS-3UTR CAA 90 bp | TGTGTTGAAGGAGTGAGTCAGCTGGAGTATCCCAGTCAGGTGTGCAGAGAACAATCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: CVEGVSQLEYPSQVCREQSRDTA*HLRIFL Trigger: CAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGA...TTGTTCTCTGCACACCTGACTGGGATACTCCAGCTGACTCACTCCTTCAACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027444.15 |
||
| CDS-3UTR CAA 90 bp | TCGAGGCTTATCCCTGCCTTTGGCTGGGGTTGGGAGTTTAGTCTTGTCAGTGAATTCATCCAATTTAGTTaGAAGCCTCTCAGGATATCC | + |
|
Preference number: 5 (lower is better) Translates to: SRLIPAFGWGWEFSLVSEFIQFS*KPLRIS Trigger: GGATATCCTGAGAGGCTTCAAACTAAATTGGATGAA...TTCACTGACAAGACTAAACTCCCAACCCCAGCCAAAGGCAGGGATAAGCCTCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000143674.8 |
||
| CDS-3UTR CAA 90 bp | TGGAGTCCCGCCTGCCTGAATGCCTGTTCTAAGATACATTTTGAAGTCTACTGGTTCATCCAATTTAGTTaGAAGCCTCTCAGGATATCC | + |
|
Preference number: 5 (lower is better) Translates to: WSPACLNACSKIHFEVYWFIQFS*KPLRIS Trigger: GGATATCCTGAGAGGCTTCAAACTAAATTGGATGAA...CCAGTAGACTTCAAAATGTATCTTAGAACAGGCATTCAGGCAGGCGGGACTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146220.2 |
||
| CDS CAA 72 bp | AATTCTCGAGACACTGCCTTGCACTTGAGGATTTTCTaGGGCACACGGGCTTCATGTTCCACACCAGGGACA | + |
|
Preference number: 6 (lower is better) Translates to: NSRDTALHLRIF*GTRASCSTPGT Trigger: TGTCCCTGGTGTGGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
||
| CDS CAA 90 bp | TGTTCTGCTGAAGAAAAGTTCAATTCTCGAGACACTGCCTTGCACTaGAGGATTTTCTTGGGCACACGGGCTTCATGTTCCACACCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: CSAEEKFNSRDTALH*RIFLGTRASCSTPG Trigger: CCCTGGTGTGGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTCAGCAGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
||
| CDS CAA 72 bp | GAAGAAAAGTTCAATTCTCGAGACACTGCCTTGCACTaGAGGATTTTCTTGGGCACACGGGCTTCATGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: EEKFNSRDTALH*RIFLGTRASCS Trigger: GGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
||
| CDS CAA 72 bp | TCTGCTGAAGAAAAGTTCAATTCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTGGGCACACGGGCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: SAEEKFNSRDTA*HLRIFLGTRAS Trigger: TGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTCAGCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
||
| CDS CAA 90 bp | TCCATTTGTTCTGCTGAAGAAAAGTTCAATTCTCGAGACACTGCCTaGCACTTGAGGATTTTCTTGGGCACACGGGCTTCATGTTCCACA | + |
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Preference number: 6 (lower is better) Translates to: SICSAEEKFNSRDTA*HLRIFLGTRASCST Trigger: TGTGGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTTCAGCAGAACAAATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
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| CDS TCA 72 bp | AAGAAAAGTTCAATTCTCGAGACACTGCCTTGCACTTaGGGATTTTCTTGGGCACACGGGCTTCATGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: KKSSILETLPCT*GFSWAHGLHVP Trigger: TGGAACATGAAGCCCGTGTGCCCAAGAAAATCCTCAAGTGCAAGGCAGTGTCTCGAGAATTGAACTTTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027444.15 ENSMUST00000146220.2 |
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