RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PDE1B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022489

Ensembl transcript IDs: ENSMUST00000023132.5, ENSMUST00000226468.2, ENSMUST00000226493.2, ENSMUST00000227955.2

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTaGTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACCCACCAGG +
Preference number: 1 (lower is better)
Translates to: RKRLYLAALALGAPS*YRPEPLPICLPPTR
Trigger: CCTGGTGGGTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 90 bp CTTCCCATGCAGGGCTTTGAAAACTGCCAGCTTCCTATCCTATTCTaGCCCTTTCTCAGGGAAGAGAAGGGAAACCCAGACCTGCCAGCT +
Preference number: 1 (lower is better)
Translates to: LPMQGFENCQLPILF*PFLREEKGNPDLPA
Trigger: AGCTGGCAGGTCTGGGTTTCCCTTCTCTTCCCTGAGAAAGGGCCAGAATAGGATAGGAAGCTGGCAGTTTTCAAAGCCCTGCATGGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 90 bp ACCACATCAGGGTTGGGGTCTCCTACGTCCACATCTAAAGAAGGCTaGCGCCACTGGAAGCTAGGAATAAGACCCCATACACACACCCAA +
Preference number: 1 (lower is better)
Translates to: TTSGLGSPTSTSKEG*RHWKLGIRPHTHTQ
Trigger: TTGGGTGTGTGTATGGGGTCTTATTCCTAGCTTCCAGTGGCGCCAGCCTTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 90 bp TGCAGCCAGCACCACCAAGCTACCCAGATCTCTAGGGGCACCATTTaGAGACAGTTAGAGAATACAAGGGGTCCAACCGTGATGTGCACA +
Preference number: 1 (lower is better)
Translates to: CSQHHQATQISRGTI*RQLENTRGPTVMCT
Trigger: TGTGCACATCACGGTTGGACCCCTTGTATTCTCTAACTGTCTCCAAATGGTGCCCCTAGAGATCTGGGTAGCTTGGTGGTGCTGGCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR TCA 90 bp CCCACAACCAACACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTaGTGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGG +
Preference number: 1 (lower is better)
Translates to: PTTNTLPWSRWGNQS*WIVLMTSKTLDSVR
Trigger: CCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGTTGTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR TCA 90 bp CACTGTCTGGGCACAGGAGAGAGAGAATTTGCAAGGGAATGGGGCTaGAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACCTCAT +
Preference number: 1 (lower is better)
Translates to: HCLGTGEREFAREWG*RSASMGSRGCPPPH
Trigger: ATGAGGTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTGTGCCCAGACAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR TCA 90 bp AGATCAGGGTACAAGCCCCTCAAGCCCAGACCATCCCCAAGTATTTaGGGACTCCAGGAAAGACTTCCCTCAGACAGAATCCCAATGGCT +
Preference number: 1 (lower is better)
Translates to: RSGYKPLKPRPSPSI*GLQERLPSDRIPMA
Trigger: AGCCATTGGGATTCTGTCTGAGGGAAGTCTTTCCTGGAGTCCTCAAATACTTGGGGATGGTCTGGGCTTGAGGGGCTTGTACCCTGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 90 bp GGGTTGGGGTCTCCTACGTCCACATCTAAAGAAGGCTGGCGCCACTaGAAGCTAGGAATAAGACCCCATACACACACCCAATTCCAGATA +
Preference number: 1 (lower is better)
Translates to: GLGSPTSTSKEGWRH*KLGIRPHTHTQFQI
Trigger: TATCTGGAATTGGGTGTGTGTATGGGGTCTTATTCCTAGCTTCCAGTGGCGCCAGCCTTCTTTAGATGTGGACGTAGGAGACCCCAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 90 bp ATCCAGATTCCCATTCTGGTTGTGCTCATCTTCTGCAGGGGAGGATaGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTG +
Preference number: 1 (lower is better)
Translates to: IQIPILVVLIFCRGG*GFFLTGGQFINGHL
Trigger: CAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAAGATGAGCACAACCAGAATGGGAATCTGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 90 bp GAGAGAGAGAATTTGCAAGGGAATGGGGCTGAAGAAGTGCAAGTATaGGATCAAGAGGATGTCCCCCACCTCATCTTAGGAAGGAACCTG +
Preference number: 1 (lower is better)
Translates to: ERENLQGNGAEEVQV*DQEDVPHLILGRNL
Trigger: CAGGTTCCTTCCTAAGATGAGGTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGCAAATTCTCTCTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 90 bp GATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTaGTTGGTGATGCCTACAGAGGGTTCCAAGAAATCTGATATTAGG +
Preference number: 1 (lower is better)
Translates to: DGASSSQGDSSSMDI*LVMPTEGSKKSDIR
Trigger: CCTAATATCAGATTTCTTGGAACCCTCTGTAGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR GCA 90 bp CAACATTACTGGGTAATACTTCCCCCTGCTTGTACTGGGGCTAGCTaGTCTCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGAC +
Preference number: 1 (lower is better)
Translates to: QHYWVILPPACTGAS*SLLPLLIRYILKED
Trigger: GTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCAGCTAGCCCCAGTACAAGCAGGGGGAAGTATTACCCAGTAATGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 90 bp CAAGGAGTTTCCTGGGACTTAACAAGAAGGGGGTTGCTGTTGCTCTaGCAGTCAGTCCTAGAATGTTCACACACATGCATACACAATAGC +
Preference number: 1 (lower is better)
Translates to: QGVSWDLTRRGLLLL*QSVLECSHTCIHNS
Trigger: GCTATTGTGTATGCATGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR TCA 90 bp CTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTaGTGCCTACAGAGGGTTCCAAGAAATCTGATATTAGGCCAAGAA +
Preference number: 1 (lower is better)
Translates to: LLPHRGTVHQWTSGW*CLQRVPRNLILGQE
Trigger: TTCTTGGCCTAATATCAGATTTCTTGGAACCCTCTGTAGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTTGGAGGCAAGAAGGATaGGGAGGGCCCAGGGGGCTG +
Preference number: 2 (lower is better)
Translates to: LALGAPSCYRPEPLPICLWRQEG*GGPRGL
Trigger: CAGCCCCCTGGGCCCTCCCCATCCTTCTTGCCTCCA...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAGGGCACAGTGACCACTaGGGGCCTGTGGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREGHSDH*GPVGGE
Trigger: CTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCC...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCGGGCACAGTGACCACTaGGGGCCTGTGGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLGHSDH*GPVGGE
Trigger: CTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCC...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACAGACTTTGGACTCAGTaGGGACCTGGTCAGCCCCCA +
Preference number: 2 (lower is better)
Translates to: LWVLQVATALSPSPSAFHRLWTQ*GPGQPP
Trigger: TGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTCT...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCTGGAGGCAAGAAGGATaGGGAGGGCCCAGGGGGCTG +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLWRQEG*GGPRGL
Trigger: CAGCCCCCTGGGCCCTCCCCATCCTTCTTGCCTCCA...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCAAGGGATGGGCACAGTaGCCACTGAGGGCCTGTGGG +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLKGWAQ*PLRACG
Trigger: CCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTT...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTGGGCACAGTGACCACTaGGGGCCTGTGGGTGGGGAG +
Preference number: 2 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGGHSDH*GPVGGE
Trigger: CTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCC...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAAAGGGATGGGCACAGTaGCCACTGAGGGCCTGTGGG +
Preference number: 2 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLKGWAQ*PLRACG
Trigger: CCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTT...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTGCAAGGGAATGGGGCTaGAGAAGTGCAAGTATGGGA +
Preference number: 2 (lower is better)
Translates to: LALGAPSCYRPEPLPICLAREWG*RSASMG
Trigger: TCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGC...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAGCTATAGCAGGGGCCTaGGAGACCAAGAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREAIAGA*ETKSMG
Trigger: CCCCATGCTCTTGGTCTCCCAGGCCCCTGCTATAGC...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTCCCATGCAGGGCTTTaGAAACTGCCAGCTTCCTAT +
Preference number: 2 (lower is better)
Translates to: LWVLQVATALSPSPSAFHSHAGL*KLPASY
Trigger: ATAGGAAGCTGGCAGTTTTCAAAGCCCTGCATGGGA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGCATTTGGCTCTCAGGTaGGCTGTCTCTCCCACAACC +
Preference number: 2 (lower is better)
Translates to: RELTPPKWPKEESRGKGWHLALR*AVSPTT
Trigger: GGTTGTGGGAGAGACAGCTCACCTGAGAGCCAAATG...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR GCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTAGGAGAGAGAGAATTTaGAAGGGAATGGGGCTGAAG +
Preference number: 2 (lower is better)
Translates to: LALGAPSCYRPEPLPICLRRERI*KGMGLK
Trigger: CTTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCT...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCACCAACACACTCCCTTaGAGCAGATGGGGGAACCAG +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLTNTLP*SRWGNQ
Trigger: CTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGT...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTATGGCTGCACTCGCTCTaGGTGCTCCAAGTTGCTACC +
Preference number: 2 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLWLHSL*VLQVAT
Trigger: GGTAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCA...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAGGGAGACCAAGAGCATaGGGGAGTCACATGCGGTTC +
Preference number: 2 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLGRPRA*GSHMRF
Trigger: GAACCGCATGTGACTCCCCCATGCTCTTGGTCTCCC...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp CCTCATCTTAGGAAGGAACCTGAAGGGACACCTGCCCTTCCCATGCAGGGCTTTAGACTTTGGACTCAGTaGGGACCTGGTCAGCCCCCA +
Preference number: 2 (lower is better)
Translates to: PHLRKEPEGTPALPMQGFRLWTQ*GPGQPP
Trigger: TGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTCT...AAAGCCCTGCATGGGAAGGGCAGGTGTCCCTTCAGGTTCCTTCCTAAGATGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCCTTACTCCTCCCAAGTaGCCAAAGGAGGAGTCCAGA +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLLTPPK*PKEESR
Trigger: TCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAG...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCTGGAGGCAAGAAGGATaGGGAGGGCCCAGGGGGCTG +
Preference number: 2 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAWRQEG*GGPRGL
Trigger: CAGCCCCCTGGGCCCTCCCCATCCTTCTTGCCTCCA...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp CCTCATCTTAGGAAGGAACCTGAAGGGACACCTGCCCTTCCCATGCAGGGCTTTCTGCCAGCTAAGATCTaGGGTGGGGGACTGAGGGAA +
Preference number: 2 (lower is better)
Translates to: PHLRKEPEGTPALPMQGFLPAKI*GGGLRE
Trigger: TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAG...AAAGCCCTGCATGGGAAGGGCAGGTGTCCCTTCAGGTTCCTTCCTAAGATGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GACTTTGGACTCAGTGAGGACCTGGTCAGCCCCCAGTTCCCTAATCCAGATTCCTTCTGCAGGGGAGGATaGGGCTTCTTCCTCACAGGG +
Preference number: 2 (lower is better)
Translates to: DFGLSEDLVSPQFPNPDSFCRGG*GFFLTG
Trigger: CCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAA...GGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCTGGGGGAACCAGTCCTaGTGGATAGTGCTAATGACA +
Preference number: 2 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLWGNQS*WIVLMT
Trigger: TGTCATTAGCACTATCCATCAGGACTGGTTCCCCCA...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTATGGACATCTGGTTGGTaGTGCCTACAGAGGGTTCCA +
Preference number: 2 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLWTSGW*CLQRVP
Trigger: TGGAACCCTCTGTAGGCATCACCAACCAGATGTCCA...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR GCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAGAGGCAGGAAGGACCTaGTCTGTGTCAACATTACTG +
Preference number: 2 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREEAGRT*SVSTLL
Trigger: CAGTAATGTTGACACAGAGCAGGTCCTTCCTGCCTC...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACACCAACACACTCCCTTaGAGCAGATGGGGGAACCAG +
Preference number: 2 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHTNTLP*SRWGNQ
Trigger: CTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACACCAACACACTCCCTTaGAGCAGATGGGGGAACCAG +
Preference number: 2 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDTNTLP*SRWGNQ
Trigger: CTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGT...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp TTTGGCTCTCAGGTGAGCTGTCTCTCCCACAACCAACACACTCCCTaGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGAC +
Preference number: 2 (lower is better)
Translates to: FGSQVSCLSHNQHTP*EQMGEPVLMDSAND
Trigger: GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGTTGTGGGAGAGACAGCTCACCTGAGAGCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp TCCTCTCCTCTCCCAGCCACTGTCTGGGCACAGGAGAGAGAGAATTaGCAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAG +
Preference number: 2 (lower is better)
Translates to: SSPLPATVWAQEREN*QGNGAEEVQVWDQE
Trigger: CTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTGTGCCCAGACAGTGGCTGGGAGAGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp ACAAATGCATGTATTTACAAGAGAGGAGGAGGCAGTCACCTGGACTaGGCCTTAAATGGGGTGACGTGGGGCAAGGAGCCTGAGGACAGG +
Preference number: 2 (lower is better)
Translates to: TNACIYKRGGGSHLD*ALNGVTWGKEPEDR
Trigger: CCTGTCCTCAGGCTCCTTGCCCCACGTCACCCCATTTAAGGCCAAGTCCAGGTGACTGCCTCCTCCTCTCTTGTAAATACATGCATTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp GCACCCACCACTTGCTGCCCGTTCCTTCCACTTCTGTTTGTTCTCTaGAATGTACTTGGTCCAGGTGGCACGGAAACTGACCACATCAGG +
Preference number: 2 (lower is better)
Translates to: APTTCCPFLPLLFVL*NVLGPGGTETDHIR
Trigger: CCTGATGTGGTCAGTTTCCGTGCCACCTGGACCAAGTACATTCAAGAGAACAAACAGAAGTGGAAGGAACGGGCAGCAAGTGGTGGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp GATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTGGCAAGGGAATGGGGCTaGAGAAGTGCAAGTATGGGA +
Preference number: 2 (lower is better)
Translates to: DGASSSQGDSSSMDIWLVAREWG*RSASMG
Trigger: TCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGC...CACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCCAGACATTGGTCGGATaGGGGCTTCCTAGTTCCCGG +
Preference number: 2 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAQTLVG*GLPSSR
Trigger: CCGGGAACTAGGAAGCCCTCATCCGACCAATGTCTG...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACCCCCTCTGCATTCAATaGGCCAGGACACATGGTTAC +
Preference number: 2 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHPLCIQ*ARTHGY
Trigger: GTAACCATGTGTCCTGGCTCATTGAATGCAGAGGGG...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACCTTACTCCTCCCAAGTaGCCAAAGGAGGAGTCCAGA +
Preference number: 2 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHLTPPK*PKEESR
Trigger: TCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAG...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp AACTCCAGGAGCCAAGGAGTTTCCTGGGACTTAACAAGAAGGGGGTaGCTGTTGCTCTGCCAGTCAGTCCTAGAATGTTCACACACATGC +
Preference number: 2 (lower is better)
Translates to: NSRSQGVSWDLTRRG*LLLCQSVLECSHTC
Trigger: GCATGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCCTTGGCTCCTGGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCGCAAGGGAATGGGGCTaGAGAAGTGCAAGTATGGGA +
Preference number: 2 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAAREWG*RSASMG
Trigger: TCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGC...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 90 bp AGGAGCCAAGGAGTTTCCTGGGACTTAACAAGAAGGGGGTTGCTGTaGCTCTGCCAGTCAGTCCTAGAATGTTCACACACATGCATACAC +
Preference number: 2 (lower is better)
Translates to: RSQGVSWDLTRRGLL*LCQSVLECSHTCIH
Trigger: GTGTATGCATGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCCTTGGCTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CAA 90 bp GGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTaGGTGATGCCTACAGAGGGTTCCAAGAAATCTGATATTAGGCCA +
Preference number: 2 (lower is better)
Translates to: GASSSQGDSSSMDIW*VMPTEGSKKSDIRP
Trigger: TGGCCTAATATCAGATTTCTTGGAACCCTCTGTAGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CAA 90 bp ATACTTCCCCCTGCTTGTACTGGGGCTAGCTGCTCTCTCCTTCCTTaGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACA +
Preference number: 2 (lower is better)
Translates to: ILPPACTGASCSLLP*LIRYILKEDLRAFT
Trigger: TGTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCAGCTAGCCCCAGTACAAGCAGGGGGAAGTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR TCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTAGATCAATAAAAGGCTaGGGGGTCAGAGTTCTCTTT +
Preference number: 2 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGRSIKG*GVRVLF
Trigger: AAAGAGAACTCTGACCCCTCAGCCTTTTATTGATCT...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR GCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCATGGGGCTGAAGAAGTaGAAGTATGGGATCAAGAGG +
Preference number: 2 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAMGLKK*KYGIKR
Trigger: CCTCTTGATCCCATACTTGCACTTCTTCAGCCCCAT...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR GCA 90 bp GCTCTCGTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTGAATGTTCACACACATaGATACACAATAGCACCCAC +
Preference number: 2 (lower is better)
Translates to: ALVLEQPKSFRQPFLWLPECSHT*IHNSTH
Trigger: GTGGGTGCTATTGTGTATGCATGTGTGTGAACATTC...AGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAACGAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACTATTGCTTAGAAACTTaGAGGCAAGAAGGATGGGGA +
Preference number: 2 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHYCLET*RQEGWG
Trigger: TCCCCATCCTTCTTGCCTCCAAGTTTCTAAGCAATA...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTTCTAGGGGCACCATTTaGAGACAGTTAGAGAATACA +
Preference number: 2 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGSRGTI*RQLENT
Trigger: TGTATTCTCTAACTGTCTCCAAATGGTGCCCCTAGA...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR TCA 90 bp GTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTATTTTATGGGGGAACCAGTCCTaGTGGATAGTGCTAATGACA +
Preference number: 2 (lower is better)
Translates to: VLEQPKSFRQPFLWLPILWGNQS*WIVLMT
Trigger: TGTCATTAGCACTATCCATCAGGACTGGTTCCCCCA...TAAAATAGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR GCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACACCCCCAAAATGTATTaGTTAGAAACTTGGAGGCAA +
Preference number: 2 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDTPKMY*LETWRQ
Trigger: TTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGT...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR GCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACACCCCCAAAATGTATTaGTTAGAAACTTGGAGGCAA +
Preference number: 2 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHTPKMY*LETWRQ
Trigger: TTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCTCCAGATTCCCATTCTaGTTGTGCTCATCTTCTGCA +
Preference number: 2 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSASRFPF*LCSSSA
Trigger: TGCAGAAGATGAGCACAACCAGAATGGGAATCTGGA...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR GCA 90 bp AGAACCAAAGGTGTATGTGAAGAAAATAAGAGGACTGACCCTCATCTACCACCTGGGTTGCTGTTGCTCTaGCAGTCAGTCCTAGAATGT +
Preference number: 2 (lower is better)
Translates to: RTKGVCEENKRTDPHLPPGLLLL*QSVLEC
Trigger: ACATTCTAGGACTGACTGGCAGAGCAACAGCAACCC...AGGTGGTAGATGAGGGTCAGTCCTCTTATTTTCTTCACATACACCTTTGGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR GCA 72 bp CTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTaGTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCA +
Preference number: 3 (lower is better)
Translates to: LYLAALALGAPS*YRPEPLPICLP
Trigger: TGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 72 bp AGGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTaGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCC +
Preference number: 3 (lower is better)
Translates to: RTGRGFTWLHSL*VLQVATALSPS
Trigger: GGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACAACCAACACACTCCCTaGGAGCAGATGGGGGAACCA +
Preference number: 3 (lower is better)
Translates to: LWVLQVATALSPSPSAFHNQHTP*EQMGEP
Trigger: TGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGTT...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 72 bp GGGGCAAGGAGCCTGAGGACAGGAAGAGGCTTTACCTaGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTACC +
Preference number: 3 (lower is better)
Translates to: GARSLRTGRGFT*LHSLWVLQVAT
Trigger: GGTAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCCTCAGGCTCCTTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR TCA 72 bp CCCACACCCCACCCGCTCCAACATTTGGCTCTCAGGTaGGCTGTCTCTCCCACAACCAACACACTCCCTTGG +
Preference number: 3 (lower is better)
Translates to: PTPHPLQHLALR*AVSPTTNTLPW
Trigger: CCAAGGGAGTGTGTTGGTTGTGGGAGAGACAGCTCACCTGAGAGCCAAATGTTGGAGCGGGTGGGGTGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACGTATTGCTTAGAAACTaGGAGGCAAGAAGGATGGGG +
Preference number: 3 (lower is better)
Translates to: LWVLQVATALSPSPSAFHVLLRN*EARRMG
Trigger: CCCCATCCTTCTTGCCTCCAAGTTTCTAAGCAATAC...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 72 bp CTTCCCACATGGAACACTCACAGCCCCCGCACACATTaGAGCCAGCACCACCAAGCTACCCAGATCTCTAGG +
Preference number: 3 (lower is better)
Translates to: LPTWNTHSPRTH*SQHHQATQISR
Trigger: CCTAGAGATCTGGGTAGCTTGGTGGTGCTGGCTGCAATGTGTGCGGGGGCTGTGAGTGTTCCATGTGGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTGCTCTCTCCTTCCTTaGCTCATAAGATACATCCTG +
Preference number: 3 (lower is better)
Translates to: LWVLQVATALSPSPSAFHCSLLP*LIRYIL
Trigger: CAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 72 bp TGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTaGTCTGTGTCAACATTACTGGGTAATACTTCCCCC +
Preference number: 3 (lower is better)
Translates to: WASSGRREAGRT*SVSTLLGNTSP
Trigger: GGGGGAAGTATTACCCAGTAATGTTGACACAGAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCATGACATCGAAGACTTaGGACTCAGTGAGGACCTGG +
Preference number: 3 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSMTSKT*DSVRTW
Trigger: CCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCAT...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCCAGGAGAGAGAGAATTaGCAAGGGAATGGGGCTGAA +
Preference number: 3 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLQEREN*QGNGAE
Trigger: TTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTG...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp GCTCTCGTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTAACAGCACCCACCACTaGCTGCCCGTTCCTTCCACT +
Preference number: 3 (lower is better)
Translates to: ALVLEQPKSFRQPFLWLPNSTHH*LPVPST
Trigger: AGTGGAAGGAACGGGCAGCAAGTGGTGGGTGCTGTT...AGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAACGAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp GGGAGGCAGGAAGGACCTGCTCTGTGTCAACATTACTaGGTAATACTTCCCCCTGCTTGTACTGGGGCTAGC +
Preference number: 3 (lower is better)
Translates to: GRQEGPALCQHY*VILPPACTGAS
Trigger: GCTAGCCCCAGTACAAGCAGGGGGAAGTATTACCCAGTAATGTTGACACAGAGCAGGTCCTTCCTGCCTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACAAACCAACACACTCCCTaGGAGCAGATGGGGGAACCA +
Preference number: 3 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTNQHTP*EQMGEP
Trigger: TGGTTCCCCCATCTGCTCCAAGGGAGTGTGTTGGTT...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTATTCCCATGCAGGGCTTaGAAAACTGCCAGCTTCCTA +
Preference number: 3 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLFPCRA*KTASFL
Trigger: TAGGAAGCTGGCAGTTTTCAAAGCCCTGCATGGGAA...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 72 bp GGGTTGGGGTCTCCTACGTCCACATCTAAAGAAGGCTaGCGCCACTGGAAGCTAGGAATAAGACCCCATACA +
Preference number: 3 (lower is better)
Translates to: GLGSPTSTSKEG*RHWKLGIRPHT
Trigger: TGTATGGGGTCTTATTCCTAGCTTCCAGTGGCGCCAGCCTTCTTTAGATGTGGACGTAGGAGACCCCAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp GGTTCCATTCCCAACTCCAGGAGCCAAGGAGTTTCCTaGGACTTAACAAGAAGGGGGTTGCTGTTGCTCTGC +
Preference number: 3 (lower is better)
Translates to: GSIPNSRSQGVS*DLTRRGLLLLC
Trigger: GCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCCTTGGCTCCTGGAGTTGGGAATGGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp CCCATTCTGGTTGTGCTCATCTTCTGCAGGGGAGGATaGGGCTTCTTCCTCACAGGGGGACAGTTCATCAAT +
Preference number: 3 (lower is better)
Translates to: PILVVLIFCRGG*GFFLTGGQFIN
Trigger: ATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAAGATGAGCACAACCAGAATGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp CACCACCAAGCTACCCAGATCTCTAGGGGCACCATTTaGAGACAGTTAGAGAATACAAGGGGTCCAACCGTG +
Preference number: 3 (lower is better)
Translates to: HHQATQISRGTI*RQLENTRGPTV
Trigger: CACGGTTGGACCCCTTGTATTCTCTAACTGTCTCCAAATGGTGCCCCTAGAGATCTGGGTAGCTTGGTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACATTCCCATGCAGGGCTTaGAAAACTGCCAGCTTCCTA +
Preference number: 3 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTFPCRA*KTASFL
Trigger: TAGGAAGCTGGCAGTTTTCAAAGCCCTGCATGGGAA...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp GACTTTGGACTCAGTGAGGACCTGGTCAGCCCCCAGTTCCCTAATCCAGATTCCATACCCCCAAAATCCTaGTCTCTCTTCCCACAACTG +
Preference number: 3 (lower is better)
Translates to: DFGLSEDLVSPQFPNPDSIPPKS*SLFPQL
Trigger: CAGTTGTGGGAAGAGAGACAAGGATTTTGGGGGTAT...GGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACTCAATGGACATCTGGTaGGTGATGCCTACAGAGGGT +
Preference number: 3 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDSMDIW*VMPTEG
Trigger: ACCCTCTGTAGGCATCACCAACCAGATGTCCATTGA...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR TCA 72 bp GGCACAGGAGAGAGAGAATTTGCAAGGGAATGGGGCTaGAGAAGTGCAAGTATGGGATCAAGAGGATGTCCC +
Preference number: 3 (lower is better)
Translates to: GTGEREFAREWG*RSASMGSRGCP
Trigger: GGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 72 bp TTAGGAAGGAACCTGAAGGGACACCTGCCCTTCCCATaGAGGGCTTTGAAAACTGCCAGCTTCCTATCCTAT +
Preference number: 3 (lower is better)
Translates to: LGRNLKGHLPFP*RALKTASFLSY
Trigger: ATAGGATAGGAAGCTGGCAGTTTTCAAAGCCCTGCATGGGAAGGGCAGGTGTCCCTTCAGGTTCCTTCCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 72 bp CAGGGCTTTGAAAACTGCCAGCTTCCTATCCTATTCTaGCCCTTTCTCAGGGAAGAGAAGGGAAACCCAGAC +
Preference number: 3 (lower is better)
Translates to: QGFENCQLPILF*PFLREEKGNPD
Trigger: GTCTGGGTTTCCCTTCTCTTCCCTGAGAAAGGGCCAGAATAGGATAGGAAGCTGGCAGTTTTCAAAGCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CCA 72 bp TCTCCTACGTCCACATCTAAAGAAGGCTGGCGCCACTaGAAGCTAGGAATAAGACCCCATACACACACCCAA +
Preference number: 3 (lower is better)
Translates to: SPTSTSKEGWRH*KLGIRPHTHTQ
Trigger: TTGGGTGTGTGTATGGGGTCTTATTCCTAGCTTCCAGTGGCGCCAGCCTTCTTTAGATGTGGACGTAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCATGACATCGAAGACTTaGGACTCAGTGAGGACCTGG +
Preference number: 3 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAMTSKT*DSVRTW
Trigger: CCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCAT...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCCAGGAGAGAGAGAATTaGCAAGGGAATGGGGCTGAA +
Preference number: 3 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAQEREN*QGNGAE
Trigger: TTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTG...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR-3UTR CAA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACTGCTCTCTCCTTCCTTaGCTCATAAGATACATCCTG +
Preference number: 3 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDCSLLP*LIRYIL
Trigger: CAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCA...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR TCA 72 bp AACACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTaGTGGATAGTGCTAATGACATCGAAGACTTTGGAC +
Preference number: 3 (lower is better)
Translates to: NTLPWSRWGNQS*WIVLMTSKTLD
Trigger: GTCCAAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 72 bp TGGGTAATACTTCCCCCTGCTTGTACTGGGGCTAGCTaGTCTCTCCTTCCTTTGCTCATAAGATACATCCTG +
Preference number: 3 (lower is better)
Translates to: WVILPPACTGAS*SLLPLLIRYIL
Trigger: CAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCAGCTAGCCCCAGTACAAGCAGGGGGAAGTATTACCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR GCA 72 bp CTGCTTTGCCAGTCAGTCCTAGAATATTCACACACGTaGATACATAACAGCACCCACCACTTGCTGCCCGTT +
Preference number: 3 (lower is better)
Translates to: LLCQSVLEYSHT*IHNSTHHLLPV
Trigger: AACGGGCAGCAAGTGGTGGGTGCTGTTATGTATGCACGTGTGTGAATATTCTAGGACTGACTGGCAAAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp CTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTaGTCAGCCCCCAGTTCCCTAATCCAGATTCCCATT +
Preference number: 3 (lower is better)
Translates to: LMTSKTLDSVRT*SAPSSLIQIPI
Trigger: AATGGGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR GCA 72 bp TTGCTCTGCCAGTCAGTCCTAGAATGTTCACACACATaGATACACAATAGCACCCACTGCTTTGCCAGTCAG +
Preference number: 3 (lower is better)
Translates to: LLCQSVLECSHT*IHNSTHCFASQ
Trigger: CTGACTGGCAAAGCAGTGGGTGCTATTGTGTATGCATGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR GCA 72 bp TCCTGGGACTTAACAAGAAGGGGGTTGCTGTTGCTCTaGCAGTCAGTCCTAGAATGTTCACACACATGCATA +
Preference number: 3 (lower is better)
Translates to: SWDLTRRGLLLL*QSVLECSHTCI
Trigger: TATGCATGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CCA 72 bp TCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTaGTTGGTGATGCCTACAGAGGGTTCCAAGAAATCT +
Preference number: 3 (lower is better)
Translates to: SSSQGDSSSMDI*LVMPTEGSKKS
Trigger: AGATTTCTTGGAACCCTCTGTAGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp AGAACCAAAGGTGTATGTGAAGAAAATAAGAGGACTGACCCTCATCTACCACCTCAGGAGAGAGAGAATTaGCAAGGGAATGGGGCTGAA +
Preference number: 3 (lower is better)
Translates to: RTKGVCEENKRTDPHLPPQEREN*QGNGAE
Trigger: TTCAGCCCCATTCCCTTGCAAATTCTCTCTCTCCTG...AGGTGGTAGATGAGGGTCAGTCCTCTTATTTTCTTCACATACACCTTTGGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR-3UTR CAA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACATAGCACCCACTGCTTaGCCAGTCAGTCCTAGAATA +
Preference number: 3 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYIAPTA*PVSPRI
Trigger: TATTCTAGGACTGACTGGCAAAGCAGTGGGTGCTAT...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACATGGTCCTCAGAGCGTaGTCATCGGCTGCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHMVLRA*SSAARF
Trigger: GAACCGGGCAGCCGATGACCACGCTCTGAGGACCAT...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTATGGGGCCCTGGAGGTaGCTCCTCTGGACAGGAACA +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLMGPWR*LLWTGT
Trigger: TGTTCCTGTCCAGAGGAGCCACCTCCAGGGCCCCAT...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGCTCGGGTCTGCTGGGTaGAGGTGGAGGCCAACCAGT +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGLGSAG*RWRPTS
Trigger: ACTGGTTGGCCTCCACCTTCACCCAGCAGACCCGAG...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGCGGAGAAGGAAGCAATaGACAGTCTGGGTCACGTCG +
Preference number: 4 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRRRRKQ*TVWVTS
Trigger: CGACGTGACCCAGACTGTCCATTGCTTCCTTCTCCG...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACCTTCCATTAGGGCCTTaGTCCAGCGGCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHLPLGP*SSGCGL
Trigger: CAGTCCACAGCCGCTGGACCAAGGCCCTAATGGAAG...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAACTCGGGTCTGCTGGGTaGAGGTGGAGGCCAACCAGT +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLRELGSAG*RWRPTS
Trigger: ACTGGTTGGCCTCCACCTTCACCCAGCAGACCCGAG...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTTGGACATCTGGTTGGTaGTGCCACTTGCTGCCCGTT +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLWTSGW*CHLLPV
Trigger: AACGGGCAGCAAGTGGCATCACCAACCAGATGTCCA...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTGTTTCTCTTCTGCCCTaGGACCTTTGGCTCGGGTCT +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLVSLLP*DLWLGS
Trigger: AGACCCGAGCCAAAGGTCGCAGGGCAGAAGAGAAAC...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACGGTGATGCCACTTGCTaGCCGTTCCTTCCACTTCTG +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHGDATC*PFLPLL
Trigger: CAGAAGTGGAAGGAACGGGCAGCAAGTGGCATCACC...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTACTCGGGTCTGCTGGGTaGAGGTGGAGGCCAACCAGT +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLLGSAG*RWRPTS
Trigger: ACTGGTTGGCCTCCACCTTCACCCAGCAGACCCGAG...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTACGAAGATCCCAGCCTaGACAGCATGCACGATGCTT +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLTKIPA*TACTML
Trigger: AAGCATCGTGCATGCTGTGCAGGCTGGGATCTTCGT...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGCTGGGTCACGTCGGCTaGGTGGATCTGGTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGLGHVG*VDLVVV
Trigger: TACCACAACCAGATCCACGCAGCCGACGTGACCCAG...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCATGGTCCTCAGAGCGTaGTCATCGGCTGCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSMVLRA*SSAARF
Trigger: GAACCGGGCAGCCGATGACCACGCTCTGAGGACCAT...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACACCATGTAGCGCAGCCTaGGGATGGGGCCCTGGAGGT +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTPCSAA*GWGPGG
Trigger: ACCTCCAGGGCCCCATCCTCAGGCTGCGCTACATGG...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACCGGCTGATGAGGCTATaGCGAGTCAGCAACTCAAAA +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHRLMRL*RVSNSK
Trigger: TTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCG...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGCTGGACACTCTTTTCTaGCACATCAGTCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRLDTLF*HISQHR
Trigger: TCTGTGCTGACTGATGTGGCAGAAAAGAGTGTCCAG...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGGGTGATGCCACTTGCTaGCCGTTCCTTCCACTTCTG +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGGDATC*PFLPLL
Trigger: CAGAAGTGGAAGGAACGGGCAGCAAGTGGCATCACC...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTTCCCATTCTGGTTGTaGTCATCTTCTGCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHFPFWL*SSSAGE
Trigger: CTCCCCTGCAGAAGATGAGCACAACCAGAATGGGAA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTATTGGCTCGGGTCTGCTaGGTGAAGGTGGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLLARVC*VKVEAN
Trigger: GTTGGCCTCCACCTTCACCCAGCAGACCCGAGCCAA...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGAAGCAATGGACAGTCTaGGTCACGTCGGCTGCGTGG +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWKQWTV*VTSAAW
Trigger: CCACGCAGCCGACGTGACCCAGACTGTCCATTGCTT...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGCGGAGAAGGAAGCAATaGACAGTCTGGGTCACGTCG +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGRRRKQ*TVWVTS
Trigger: CGACGTGACCCAGACTGTCCATTGCTTCCTTCTCCG...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAACTTCCATTAGGGCCTTaGTCCAGCGGCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLRELPLGP*SSGCGL
Trigger: CAGTCCACAGCCGCTGGACCAAGGCCCTAATGGAAG...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACACTTCAGCTCCAGGGGTaGCGGGCAATCCGACTCCAG +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTLQLQG*RAIRLQ
Trigger: CTGGAGTCGGATTGCCCGTCACCCCTGGAGCTGAAG...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
CDS-3UTR TCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGAGAGGTCCAGGTTCTTaGGACAGTTGTGGACTGCAG +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGRGPGS*DSCGLQ
Trigger: CTGCAGTCCACAACTGTCTCAAGAACCTGGACCTCT...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTTTCGAAAGACAGAGCTaGTGTGGTGATTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLFERQS*CGDSPA
Trigger: TGCTGGAGAATCACCACATCAGCTCTGTCTTTCGAA...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCGTTTCTCTTCTGCCCTaGGACCTTTGGCTCGGGTCT +
Preference number: 4 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLVSLLP*DLWLGS
Trigger: AGACCCGAGCCAAAGGTCGCAGGGCAGAAGAGAAAC...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGGTTTCTCTTCTGCCCTaGGACCTTTGGCTCGGGTCT +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWVSLLP*DLWLGS
Trigger: AGACCCGAGCCAAAGGTCGCAGGGCAGAAGAGAAAC...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAAGCGTGGTCATCGGCTaGCCGGTTCAAGGAAAAGAC +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLRESVVIG*PVQGKD
Trigger: GTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCT...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTGGAAGCTGTTGGTTGTaGCTGTGTGCTCATAGTCAT +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLGSCWL*LCAHSH
Trigger: ATGACTATGAGCACACAGGCACAACCAACAGCTTCC...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCGTTGTGCTCATCTTCTaGAGGGGAGGATGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSVVLIF*RGGWGF
Trigger: GAAGCCCCATCCTCCCCTGCAGAAGATGAGCACAAC...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGTTGGTCCAGCGGCTGTaGACTGACCACTGCTTAGTT +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGLVQRL*TDHCLV
Trigger: AACTAAGCAGTGGTCAGTCCACAGCCGCTGGACCAA...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGAGAGGTCCAGGTTCTTaGGACAGTTGTGGACTGCAG +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWRGPGS*DSCGLQ
Trigger: CTGCAGTCCACAACTGTCTCAAGAACCTGGACCTCT...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAACAGAGCTGATGTGGTaGTTCTCCAGCACCGATCGA +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLRETELMW*FSSTDR
Trigger: TCGATCGGTGCTGGAGAATCACCACATCAGCTCTGT...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGACGAAGATCCCAGCCTaGACAGCATGCACGATGCTT +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWTKIPA*TACTML
Trigger: AAGCATCGTGCATGCTGTGCAGGCTGGGATCTTCGT...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GACTTTGGACTCAGTGAGGACCTGGTCAGCCCCCAGTTCCCTAATCCAGATTCCCTGGGTCACGTCGGCTaGGTGGATCTGGTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: DFGLSEDLVSPQFPNPDSLGHVG*VDLVVV
Trigger: TACCACAACCAGATCCACGCAGCCGACGTGACCCAG...GGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAATCTCTGACAGGCAGTaGACCATGCCTGTGCGGAGA +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLISDRQ*TMPVRR
Trigger: TCTCCGCACAGGCATGGTGCACTGCCTGTCAGAGAT...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGTTCATAGTCTTCACTTaGTGGAAATGGCAGGACATG +
Preference number: 4 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRFIVFT*WKWQDM
Trigger: CATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAA...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACATTGGCTCGGGTCTGCTaGGTGAAGGTGGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTLARVC*VKVEAN
Trigger: GTTGGCCTCCACCTTCACCCAGCAGACCCGAGCCAA...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCCGATGCTTCGGAACTTaGGTTTCTCTTCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLRCFGT*VSLLPC
Trigger: GCAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCG...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACATGGTCCTCAGAGCGTaGTCATCGGCTGCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHMVLRA*SSAARF
Trigger: GAACCGGGCAGCCGATGACCACGCTCTGAGGACCAT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTGGCACATTCTGACTTaGTCTGAATGTGGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHWHILT*SECGSC
Trigger: ACAGCTTCCACATTCAGACCAAGTCAGAATGTGCCA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGTTCACTTGCTGGAAATaGCAGGACATGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGFTCWK*QDMSVA
Trigger: GGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAA...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACGAAGAGATAGGGCCTTaGACTTGTCAATCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: LWVLQVATALSPSPSAFHEEIGP*TCQSFP
Trigger: TGGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTC...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGTTGGTCCAGCGGCTGTaGACTGACCACTGCTTAGTT +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWLVQRL*TDHCLV
Trigger: AACTAAGCAGTGGTCAGTCCACAGCCGCTGGACCAA...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCGCCTCCTTGTCACCCTaGCGGAAGAACTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSASLSP*RKNSSI
Trigger: AATGGAAGAGTTCTTCCGCCAGGGTGACAAGGAGGC...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTTCATCAATGGACATCTaGTTGGTGATGCCACTTGCT +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLSSMDI*LVMPLA
Trigger: AGCAAGTGGCATCACCAACCAGATGTCCATTGATGA...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TCCCACCTCCTTCTAGCCTGTGTCTCTTCTCATAAAGGTGTCCCCTCTGCATTCCCAGCGGCTGTGGACTaGCCACTGCTTAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: SHLLLACVSSHKGVPSAFPAAVD*PLLSWV
Trigger: CACCCAACTAAGCAGTGGTCAGTCCACAGCCGCTGG...GAATGCAGAGGGGACACCTTTATGAGAAGAGACACAGGCTAGAAGGAGGTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR TCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAACCAGCGGCTGTGGACTaGCCACTGCTTAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEPAAVD*PLLSWV
Trigger: CACCCAACTAAGCAGTGGTCAGTCCACAGCCGCTGG...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACAGGTGGCACGGAAACTaGCCACATCAGGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDRWHGN*PHQGWG
Trigger: ACCCCAACCCTGATGTGGTCAGTTTCCGTGCCACCT...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CTCGCTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTTTCTGTTTGTTCTCTTaGATGTACTTGGTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: LALGAPSCYRPEPLPICLFCLFS*MYLVQV
Trigger: CACCTGGACCAAGTACATTCAAGAGAACAAACAGAA...AAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAGCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAGCACAGCATGCACGATaGTTCGGAACTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREAQHAR*FGTWVS
Trigger: AGAAACCCAAGTTCCGAAGCATCGTGCATGCTGTGC...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACCTGGGTCACGTCGGCTaGGTGGATCTGGTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDLGHVG*VDLVVV
Trigger: TACCACAACCAGATCCACGCAGCCGACGTGACCCAG...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTACTGTGGACTGACCACTaGTTAGTTGGGTGGCTGATG +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLLWTDH*LVGWLM
Trigger: CATCAGCCACCCAACTAAGCAGTGGTCAGTCCACAG...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAGTTGGTGATGCCACTTaGTGCCCGTTCCTTCCACTT +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLVGDAT*CPFLPL
Trigger: AAGTGGAAGGAACGGGCAGCAAGTGGCATCACCAAC...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACAAGCAATGGACAGTCTaGGTCACGTCGGCTGCGTGG +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDKQWTV*VTSAAW
Trigger: CCACGCAGCCGACGTGACCCAGACTGTCCATTGCTT...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCTTCACTTGCTGGAAATaGCAGGACATGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSFTCWK*QDMSVA
Trigger: GGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAA...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACACTTCCATTAGGGCCTTaGTCCAGCGGCTGTGGACTG +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTLPLGP*SSGCGL
Trigger: CAGTCCACAGCCGCTGGACCAAGGCCCTAATGGAAG...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTAGTGCGATCACAGAGTaGAGAGAAGGGCAGGCCCAG +
Preference number: 4 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGSAITE*REGQAQ
Trigger: CTGGGCCTGCCCTTCTCTCCACTCTGTGATCGCACT...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCAAACCTATCTGGGACTaGGCCACCAATGTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLKPIWD*ATNVEV
Trigger: CACTTCCACATTGGTGGCCCAGTCCCAGATAGGTTT...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACATTCTGCAGGGGAGGATaGGGCTTCTTCCTCACAGGG +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTFCRGG*GFFLTG
Trigger: CCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAA...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACTTCTGCAGGGGAGGATaGGGCTTCTTCCTCACAGGG +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHFCRGG*GFFLTG
Trigger: CCCTGTGAGGAAGAAGCCCCATCCTCCCCTGCAGAA...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
3UTR CAA 72 bp TTGGTCCAGGTGGCACGGAAACTGACCACATCAGGGTaGGGGTCTCCTACGTCCACATCTAAAGAAGGCTGG +
Preference number: 4 (lower is better)
Translates to: LVQVARKLTTSG*GSPTSTSKEGW
Trigger: CCAGCCTTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAGTTTCCGTGCCACCTGGACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR TCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACTTCAGCTCCAGGGGTaGCGGGCAATCCGACTCCAG +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGLQLQG*RAIRLQ
Trigger: CTGGAGTCGGATTGCCCGTCACCCCTGGAGCTGAAG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACCAGGGCCCGCAGCTCTaGAAATTCATCCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHQGPQL*KFILGE
Trigger: CTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTG...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTCAGGGCCCGCAGCTCTaGAAATTCATCCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGQGPQL*KFILGE
Trigger: CTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTG...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp CCTCATCTTAGGAAGGAACCTGAAGGGACACCTGCCCTTCCCATGCAGGGCTTTCTGTGGACTGACCACTaGTTAGTTGGGTGGCTGATG +
Preference number: 4 (lower is better)
Translates to: PHLRKEPEGTPALPMQGFLWTDH*LVGWLM
Trigger: CATCAGCCACCCAACTAAGCAGTGGTCAGTCCACAG...AAAGCCCTGCATGGGAAGGGCAGGTGTCCCTTCAGGTTCCTTCCTAAGATGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTTTGGCTCGGGTCTGCTaGGTGAAGGTGGAGGCCAAC +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRALARVC*VKVEAN
Trigger: GTTGGCCTCCACCTTCACCCAGCAGACCCGAGCCAA...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAATGGAGGTGGCTCCTCTaGACAGGAACAGGGTTTGCC +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEWRWLL*TGTGFA
Trigger: GGCAAACCCTGTTCCTGTCCAGAGGAGCCACCTCCA...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAACATTCTGACTTGGTCTaGATGTGGAAGCTGTTGGTT +
Preference number: 4 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREHSDLV*MWKLLV
Trigger: AACCAACAGCTTCCACATTCAGACCAAGTCAGAATG...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCCATTCTGACTTGGTCTaGATGTGGAAGCTGTTGGTT +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSHSDLV*MWKLLV
Trigger: AACCAACAGCTTCCACATTCAGACCAAGTCAGAATG...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTGACAGAGCTGATGTGGTaGTTCTCCAGCACCGATCGA +
Preference number: 4 (lower is better)
Translates to: DGASSSQGDSSSMDIWLVTELMW*FSSTDR
Trigger: TCGATCGGTGCTGGAGAATCACCACATCAGCTCTGT...CACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR TCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACCAGCGGCTGTGGACTaGCCACTGCTTAGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGPAAVD*PLLSWV
Trigger: CACCCAACTAAGCAGTGGTCAGTCCACAGCCGCTGG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCAGGTGGCACGGAAACTaGCCACATCAGGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSARWHGN*PHQGWG
Trigger: ACCCCAACCCTGATGTGGTCAGTTTCCGTGCCACCT...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GCACGGAAACTGACCACATCAGGGTTGGGGTCTCCTACGTCCACATCTAAAGAAAGCGTGGTCATCGGCTaGCCGGTTCAAGGAAAAGAC +
Preference number: 4 (lower is better)
Translates to: ARKLTTSGLGSPTSTSKESVVIG*PVQGKD
Trigger: GTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCT...TTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAGTTTCCGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACCTGTGGACTGACCACTaGTTAGTTGGGTGGCTGATG +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDLWTDH*LVGWLM
Trigger: CATCAGCCACCCAACTAAGCAGTGGTCAGTCCACAG...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGTGGCACATTCTGACTTaGTCTGAATGTGGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWWHILT*SECGSC
Trigger: ACAGCTTCCACATTCAGACCAAGTCAGAATGTGCCA...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGGAAGAGATAGGGCCTTaGACTTGTCAATCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWEEIGP*TCQSFP
Trigger: TGGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTC...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCGAAGAGATAGGGCCTTaGACTTGTCAATCCTTTCCA +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSEEIGP*TCQSFP
Trigger: TGGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTC...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACGCCTCCTTGTCACCCTaGCGGAAGAACTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDASLSP*RKNSSI
Trigger: AATGGAAGAGTTCTTCCGCCAGGGTGACAAGGAGGC...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACTGGCTGCAGCAAAGATaGTGGCCAAGACCTCAATCT +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDWLQQR*WPRPQS
Trigger: AGATTGAGGTCTTGGCCATCATCTTTGCTGCAGCCA...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACTGGCTGCAGCAAAGATaGTGGCCAAGACCTCAATCT +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHWLQQR*WPRPQS
Trigger: AGATTGAGGTCTTGGCCATCATCTTTGCTGCAGCCA...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAACAGAGCTGATGTGGTaGTTCTCCAGCACCGATCGA +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIETELMW*FSSTDR
Trigger: TCGATCGGTGCTGGAGAATCACCACATCAGCTCTGT...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp CCTCATCTTAGGAAGGAACCTGAAGGGACACCTGCCCTTCCCATGCAGGGCTTTTTCGAAAGACAGAGCTaGTGTGGTGATTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: PHLRKEPEGTPALPMQGFFERQS*CGDSPA
Trigger: TGCTGGAGAATCACCACATCAGCTCTGTCTTTCGAA...AAAGCCCTGCATGGGAAGGGCAGGTGTCCCTTCAGGTTCCTTCCTAAGATGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp AGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGATGGTTCTGTTTGTTCTCTTaGATGTACTTGGTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: RELTPPKWPKEESRGKGWFCLFS*MYLVQV
Trigger: CACCTGGACCAAGTACATTCAAGAGAACAAACAGAA...CCATCCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GCTCTCGTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTGCACAGCATGCACGATaGTTCGGAACTTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: ALVLEQPKSFRQPFLWLPAQHAR*FGTWVS
Trigger: AGAAACCCAAGTTCCGAAGCATCGTGCATGCTGTGC...AGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAACGAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCCCAGCCTGCACAGCATaGACGATGCTTCGGAACTTG +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAPACTA*TMLRNL
Trigger: CAAGTTCCGAAGCATCGTGCATGCTGTGCAGGCTGG...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTCCAGCCTGCACAGCATaGACGATGCTTCGGAACTTG +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRAPACTA*TMLRNL
Trigger: CAAGTTCCGAAGCATCGTGCATGCTGTGCAGGCTGG...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GCTCTCGTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTCGGCTGATGAGGCTATaGCGAGTCAGCAACTCAAAA +
Preference number: 4 (lower is better)
Translates to: ALVLEQPKSFRQPFLWLPRLMRL*RVSNSK
Trigger: TTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCG...AGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAACGAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACATCCACATTTTCTTGCTaGGGGCTGACTTCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTSTFSC*GLTSAP
Trigger: TGGAGCTGAAGTCAGCCCCCAGCAAGAAAATGTGGA...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAACGATGCTTCGGAACTTaGGTTTCTCTTCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIERCFGT*VSLLPC
Trigger: GCAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCG...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGAAAGCAATGGACAGTCTaGGTCACGTCGGCTGCGTGG +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGKQWTV*VTSAAW
Trigger: CCACGCAGCCGACGTGACCCAGACTGTCCATTGCTT...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCATAGTCTTCACTTGCTaGAAATGGCAGGACATGTCT +
Preference number: 4 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLIVFTC*KWQDMS
Trigger: AGACATGTCCTGCCATTTCCAGCAAGTGAAGACTAT...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGCCTCCTTGTCACCCTaGCGGAAGAACTCTTCCATT +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEASLSP*RKNSSI
Trigger: AATGGAAGAGTTCTTCCGCCAGGGTGACAAGGAGGC...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGAAGTGCGATCACAGAGTaGAGAGAAGGGCAGGCCCAG +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGSAITE*REGQAQ
Trigger: CTGGGCCTGCCCTTCTCTCCACTCTGTGATCGCACT...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CACACTCCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACAAACCTATCTGGGACTaGGCCACCAATGTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: HTPLEQMGEPVLMDSANDKPIWD*ATNVEV
Trigger: CACTTCCACATTGGTGGCCCAGTCCCAGATAGGTTT...GTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGGAGTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACAAACCTATCTGGGACTaGGCCACCAATGTGGAAGTG +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHKPIWD*ATNVEV
Trigger: CACTTCCACATTGGTGGCCCAGTCCCAGATAGGTTT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCAGAGGTCCAGGTTCTTaGGACAGTTGTGGACTGCAG +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSARGPGS*DSCGLQ
Trigger: CTGCAGTCCACAACTGTCTCAAGAACCTGGACCTCT...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTTGGACATCTGGTTGGTaGTGCCACTTGCTGCCCGTT +
Preference number: 4 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFWTSGW*CHLLPV
Trigger: AACGGGCAGCAAGTGGCATCACCAACCAGATGTCCA...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGAATCTCTGACAGGCAGTaGACCATGCCTGTGCGGAGA +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGISDRQ*TMPVRR
Trigger: TCTCCGCACAGGCATGGTGCACTGCCTGTCAGAGAT...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TCCCGGGGACAGGAAGGAGGCAAAGGGTCAAAAACCCATCTAGATCAGGGTACAGGAAGCTGTTGGTTGTaGCTGTGTGCTCATAGTCAT +
Preference number: 4 (lower is better)
Translates to: SRGQEGGKGSKTHLDQGTGSCWL*LCAHSH
Trigger: ATGACTATGAGCACACAGGCACAACCAACAGCTTCC...TGTACCCTGATCTAGATGGGTTTTTGACCCTTTGCCTCCTTCCTGTCCCCGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACGGAAGCTGTTGGTTGTaGCTGTGTGCTCATAGTCAT +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHGSCWL*LCAHSH
Trigger: ATGACTATGAGCACACAGGCACAACCAACAGCTTCC...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCTTCATCTCATCATCCTaGATCATTCGAAAGACAGAG +
Preference number: 4 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSFISSS*IIRKTE
Trigger: CTCTGTCTTTCGAATGATGCAGGATGATGAGATGAA...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTCAGGGCCCGCAGCTCTaGAAATTCATCCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFQGPQL*KFILGE
Trigger: CTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTG...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTATCAATCCTTTCCAACTaGTGCAGTGCTGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLSILSN*CSAVFI
Trigger: TATGAAGACAGCACTGCAGCAGTTGGAAAGGATTGA...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTGTTGGTGATGCCACTTaGTGCCCGTTCCTTCCACTT +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRAVGDAT*CPFLPL
Trigger: AAGTGGAAGGAACGGGCAGCAAGTGGCATCACCAAC...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAATTCCCATTCTGGTTGTaGTCATCTTCTGCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEFPFWL*SSSAGE
Trigger: CTCCCCTGCAGAAGATGAGCACAACCAGAATGGGAA...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GCACGGAAACTGACCACATCAGGGTTGGGGTCTCCTACGTCCACATCTAAAGAATCCACATTTTCTTGCTaGGGGCTGACTTCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: ARKLTTSGLGSPTSTSKESTFSC*GLTSAP
Trigger: TGGAGCTGAAGTCAGCCCCCAGCAAGAAAATGTGGA...TTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAGTTTCCGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTCGATGCTTCGGAACTTaGGTTTCTCTTCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRARCFGT*VSLLPC
Trigger: GCAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCG...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACGGAGAAGGAAGCAATaGACAGTCTGGGTCACGTCG +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGRRRKQ*TVWVTS
Trigger: CGACGTGACCCAGACTGTCCATTGCTTCCTTCTCCG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAATAGTCTTCACTTGCTaGAAATGGCAGGACATGTCT +
Preference number: 4 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLIVFTC*KWQDMS
Trigger: AGACATGTCCTGCCATTTCCAGCAAGTGAAGACTAT...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 72 bp GTACAAGCCCCTCAAGCCCAGACCATCCCCAAGTATTaGAGGACTCCAGGAAAGACTTCCCTCAGACAGAAT +
Preference number: 4 (lower is better)
Translates to: VQAPQAQTIPKY*RTPGKTSLRQN
Trigger: ATTCTGTCTGAGGGAAGTCTTTCCTGGAGTCCTCAAATACTTGGGGATGGTCTGGGCTTGAGGGGCTTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCTGGCTGCAGCAAAGATaGTGGCCAAGACCTCAATCT +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAWLQQR*WPRPQS
Trigger: AGATTGAGGTCTTGGCCATCATCTTTGCTGCAGCCA...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR TCA 90 bp GATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTGCATTCTGACTTGGTCTaGATGTGGAAGCTGTTGGTT +
Preference number: 4 (lower is better)
Translates to: DGASSSQGDSSSMDIWLVHSDLV*MWKLLV
Trigger: AACCAACAGCTTCCACATTCAGACCAAGTCAGAATG...CACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp GACTTTGGACTCAGTGAGGACCTGGTCAGCCCCCAGTTCCCTAATCCAGATTCCTCAATCCTTTCCAACTaGTGCAGTGCTGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: DFGLSEDLVSPQFPNPDSSILSN*CSAVFI
Trigger: TATGAAGACAGCACTGCAGCAGTTGGAAAGGATTGA...GGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAACTGGACACTCTTTTCTaGCACATCAGTCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIELDTLF*HISQHR
Trigger: TCTGTGCTGACTGATGTGGCAGAAAAGAGTGTCCAG...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGAATGTGGAAGCTGTTaGTTGTGCCTGTGTGCTCAT +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEECGSC*LCLCAH
Trigger: ATGAGCACACAGGCACAACCAACAGCTTCCACATTC...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACTGGCACATTCTGACTTaGTCTGAATGTGGAAGCTGT +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHWHILT*SECGSC
Trigger: ACAGCTTCCACATTCAGACCAAGTCAGAATGTGCCA...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GACTTTGGACTCAGTGAGGACCTGGTCAGCCCCCAGTTCCCTAATCCAGATTCCGATCATTGTACAGGATaGCACATTCTGACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: DFGLSEDLVSPQFPNPDSDHCTG*HILTWS
Trigger: AGACCAAGTCAGAATGTGCCATCCTGTACAATGATC...GGAATCTGGATTAGGGAACTGGGGGCTGACCAGGTCCTCACTGAGTCCAAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGATTGGTCCAGCGGCTGTaGACTGACCACTGCTTAGTT +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGLVQRL*TDHCLV
Trigger: AACTAAGCAGTGGTCAGTCCACAGCCGCTGGACCAA...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 72 bp CCTGCTTGTACTGGGGCTAGCTGCTCTCTCCTTCCTTaGCTCATAAGATACATCCTGAAGGAAGACCTCAGA +
Preference number: 4 (lower is better)
Translates to: PACTGASCSLLP*LIRYILKEDLR
Trigger: TCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGAGAGCAGCTAGCCCCAGTACAAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
3UTR CAA 72 bp GGAGTTTCCTGGGACTTAACAAGAAGGGGGTTGCTGTaGCTCTGCCAGTCAGTCCTAGAATGTTCACACACA +
Preference number: 4 (lower is better)
Translates to: GVSWDLTRRGLL*LCQSVLECSHT
Trigger: TGTGTGTGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
3UTR CAA 72 bp AGCCAAGGAGTTTCCTGGGACTTAACAAGAAGGGGGTaGCTGTTGCTCTGCCAGTCAGTCCTAGAATGTTCA +
Preference number: 4 (lower is better)
Translates to: SQGVSWDLTRRG*LLLCQSVLECS
Trigger: TGAACATTCTAGGACTGACTGGCAGAGCAACAGCAACCCCCTTCTTGTTAAGTCCCAGGAAACTCCTTGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR TCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTTTCGAAAGACAGAGCTaGTGTGGTGATTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRAFERQS*CGDSPA
Trigger: TGCTGGAGAATCACCACATCAGCTCTGTCTTTCGAA...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTATTTTAACGAAGATCCCAGCCTaGACAGCATGCACGATGCTT +
Preference number: 4 (lower is better)
Translates to: VLEQPKSFRQPFLWLPILTKIPA*TACTML
Trigger: AAGCATCGTGCATGCTGTGCAGGCTGGGATCTTCGT...TAAAATAGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACGGCTGATGAGGCTATaGCGAGTCAGCAACTCAAAA +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGRLMRL*RVSNSK
Trigger: TTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAATTCCAACTGCTGCAGTaGTGTCTTCATAGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIEFQLLQ*CLHSLH
Trigger: GTGAAGACTATGAAGACAGCACTGCAGCAGTTGGAA...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACGTTGTGCTCATCTTCTaGAGGGGAGGATGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYVVLIF*RGGWGF
Trigger: GAAGCCCCATCCTCCCCTGCAGAAGATGAGCACAAC...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGATTCACTTGCTGGAAATaGCAGGACATGTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGFTCWK*QDMSVA
Trigger: GGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAA...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACATAGTCTTCACTTGCTaGAAATGGCAGGACATGTCT +
Preference number: 4 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHIVFTC*KWQDMS
Trigger: AGACATGTCCTGCCATTTCCAGCAAGTGAAGACTAT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAATCATCAATGGACATCTaGTTGGTGATGCCACTTGCT +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIESSMDI*LVMPLA
Trigger: AGCAAGTGGCATCACCAACCAGATGTCCATTGATGA...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAATCCAGATTCCCATTCTaGTTGTGCTCATCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: PLEQMGEPVLMDSANDIESRFPF*LCSSSA
Trigger: TGCAGAAGATGAGCACAACCAGAATGGGAATCTGGA...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
3UTR CAA 72 bp TCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTaGGTGATGCCTACAGAGGGTTCCAAGAAATCTGAT +
Preference number: 4 (lower is better)
Translates to: SSQGDSSSMDIW*VMPTEGSKKSD
Trigger: ATCAGATTTCTTGGAACCCTCTGTAGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp GGATGGGGCTTCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTGGTTGGTTTCATCTCATCATCCTaGATCATTCGAAAGACAGAG +
Preference number: 4 (lower is better)
Translates to: GWGFFLTGGQFINGHLVGFISSS*IIRKTE
Trigger: CTCTGTCTTTCGAATGATGCAGGATGATGAGATGAA...ACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGAAGCCCCATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR GCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTTTCCAACTGCTGCAGTaGTGTCTTCATAGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRAFQLLQ*CLHSLH
Trigger: GTGAAGACTATGAAGACAGCACTGCAGCAGTTGGAA...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTCTGGACACTCTTTTCTaGCACATCAGTCAGCACAGA +
Preference number: 4 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFLDTLF*HISQHR
Trigger: TCTGTGCTGACTGATGTGGCAGAAAAGAGTGTCCAG...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTGAATGTGGAAGCTGTTaGTTGTGCCTGTGTGCTCAT +
Preference number: 4 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFECGSC*LCLCAH
Trigger: ATGAGCACACAGGCACAACCAACAGCTTCCACATTC...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTTTCATAGTCTTCACTTaGTGGAAATGGCAGGACATG +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRAFIVFT*WKWQDM
Trigger: CATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAA...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCGATCATTGTACAGGATaGCACATTCTGACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSADHCTG*HILTWS
Trigger: AGACCAAGTCAGAATGTGCCATCCTGTACAATGATC...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTGATCATTGTACAGGATaGCACATTCTGACTTGGTCT +
Preference number: 4 (lower is better)
Translates to: YILKEDLRAFTDIGRMRADHCTG*HILTWS
Trigger: AGACCAAGTCAGAATGTGCCATCCTGTACAATGATC...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCTTCATCTCATCATCCTaGATCATTCGAAAGACAGAG +
Preference number: 4 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSAFISSS*IIRKTE
Trigger: CTCTGTCTTTCGAATGATGCAGGATGATGAGATGAA...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGATCAATCCTTTCCAACTaGTGCAGTGCTGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGSILSN*CSAVFI
Trigger: TATGAAGACAGCACTGCAGCAGTTGGAAAGGATTGA...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACGAATGTGGAAGCTGTTaGTTGTGCCTGTGTGCTCAT +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYECGSC*LCLCAH
Trigger: ATGAGCACACAGGCACAACCAACAGCTTCCACATTC...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACTTCCAACTGCTGCAGTaGTGTCTTCATAGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYFQLLQ*CLHSLH
Trigger: GTGAAGACTATGAAGACAGCACTGCAGCAGTTGGAA...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp GTTCTAGAGCAGCCCAAGTCATTCAGACAGCCTTTCCTGTGGCTTCCTATTTTATTCTTGAGACAGTTGTaGACTGCAGTAGAGTATGTG +
Preference number: 4 (lower is better)
Translates to: VLEQPKSFRQPFLWLPILFLRQL*TAVEYV
Trigger: CACATACTCTACTGCAGTCCACAACTGTCTCAAGAA...TAAAATAGGAAGCCACAGGAAAGGCTGTCTGAATGACTTGGGCTGCTCTAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACTCCAGATTCCCATTCTaGTTGTGCTCATCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYSRFPF*LCSSSA
Trigger: TGCAGAAGATGAGCACAACCAGAATGGGAATCTGGA...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR GCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACTTCATAGTCTTCACTTaGTGGAAATGGCAGGACATG +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYFIVFT*WKWQDM
Trigger: CATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAA...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CCA 90 bp TCTCCTTCCTTTGCTCATAAGATACATCCTGAAGGAAGACCTCAGAGCGTTTACTTCTTGAGACAGTTGTaGACTGCAGTAGAGTATGTG +
Preference number: 4 (lower is better)
Translates to: SPSFAHKIHPEGRPQSVYFLRQL*TAVEYV
Trigger: CACATACTCTACTGCAGTCCACAACTGTCTCAAGAA...GTAAACGCTCTGAGGTCTTCCTTCAGGATGTATCTTATGAGCAAAGGAAGGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGCAGAGGTCCAGGTTCTaGAGACAGTTGTGGACTGCA +
Preference number: 5 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRQRSRF*RQLWTA
Trigger: TGCAGTCCACAACTGTCTCAAGAACCTGGACCTCTG...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGAAATCTCTTAGTGGGCCAGTTCGGGGAGAAGGGAGGCAGGAAGGACCTGCTCCCCAGCTCTGCCTCCTaGTCACCCTGGCGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: GNLLVGQFGEKGGRKDLLPSSAS*SPWRKN
Trigger: GTTCTTCCGCCAGGGTGACAAGGAGGCAGAGCTGGG...GAGCAGGTCCTTCCTGCCTCCCTTCTCCCCGAACTGGCCCACTAAGAGATTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGTCAATGGACATCTGGTaGGTGATGCCACTTGCTGCC +
Preference number: 5 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRSMDIW*VMPLAA
Trigger: GGCAGCAAGTGGCATCACCAACCAGATGTCCATTGA...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGAGATTCCCATTCTGGTaGTGCTCATCTTCTGCAGGG +
Preference number: 5 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRRFPFW*CSSSAG
Trigger: CCCTGCAGAAGATGAGCACAACCAGAATGGGAATCT...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGCATCTCTGACCCTCCCCTCCAAACTGTAGGAAGCCTGCAGGGAGCTTACTCCCTGACCACATCAGGGTaGGGGTCTCCTACGTCCACA +
Preference number: 5 (lower is better)
Translates to: GISDPPLQTVGSLQGAYSLTTSG*GSPTST
Trigger: TGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAG...GGAGTAAGCTCCCTGCAGGCTTCCTACAGTTTGGAGGGGAGGGTCAGAGATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTTAATCCACATTTTCTaGCTGGGGGCTGACTTCAGC +
Preference number: 5 (lower is better)
Translates to: LWVLQVATALSPSPSAFHLIHIF*LGADFS
Trigger: GCTGAAGTCAGCCCCCAGCAAGAAAATGTGGATTAA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
CDS-3UTR CAA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGACGATGCTTCGGAACTaGGGTTTCTCTTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGTMLRN*GFSSAL
Trigger: CAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCGT...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACAGCACCGATCGATCATaGTACAGGATGGCACATTCT +
Preference number: 5 (lower is better)
Translates to: LWVLQVATALSPSPSAFHSTDRS*YRMAHS
Trigger: AGAATGTGCCATCCTGTACAATGATCGATCGGTGCT...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGCTTCATAGTCTTCACTaGCTGGAAATGGCAGGACAT +
Preference number: 5 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRLHSLH*LEMAGH
Trigger: ATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAG...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACCCCAGCTCTGCCTCCTaGTCACCCTGGCGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHPSSAS*SPWRKN
Trigger: GTTCTTCCGCCAGGGTGACAAGGAGGCAGAGCTGGG...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GTCCAGAGGCAAGGGATGGGCACAGTGACCACTGAGGGCCTGTGGGTGGGGAGGTGTCTAGGATTTGCCTaGTCTCATCAATGTAGACAG +
Preference number: 5 (lower is better)
Translates to: VQRQGMGTVTTEGLWVGRCLGFA*SHQCRQ
Trigger: CTGTCTACATTGATGAGACAAGGCAAATCCTAGACA...CCTCCCCACCCACAGGCCCTCAGTGGTCACTGTGCCCATCCCTTGCCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CTCTGGGTGCTCCAAGTTGCTACCGCCCTGAGCCCCTCCCCATCTGCCTTCCACTGTCTAGGATTTGCCTaGTCTCATCAATGTAGACAG +
Preference number: 5 (lower is better)
Translates to: LWVLQVATALSPSPSAFHCLGFA*SHQCRQ
Trigger: CTGTCTACATTGATGAGACAAGGCAAATCCTAGACA...GTGGAAGGCAGATGGGGAGGGGCTCAGGGCGGTAGCAACTTGGAGCACCCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGACAGGAAGAGGCTTTACCTGGCTGCACTCGCTCTGGGTGCTCCAAGTTGCTAACGATGCTTCGGAACTaGGGTTTCTCTTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: GQEEALPGCTRSGCSKLLTMLRN*GFSSAL
Trigger: CAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCGT...TAGCAACTTGGAGCACCCAGAGCGAGTGCAGCCAGGTAAAGCCTCTTCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GAGAAGGGAAACCCAGACCTGCCAGCTAAGATCTGGGGTGGGGGACTGAGGGAAGATAGGGCCTTGGACTaGTCAATCCTTTCCAACTGC +
Preference number: 5 (lower is better)
Translates to: EKGNPDLPAKIWGGGLREDRALD*SILSNC
Trigger: GCAGTTGGAAAGGATTGACAAGTCCAAGGCCCTATC...TTCCCTCAGTCCCCCACCCCAGATCTTAGCTGGCAGGTCTGGGTTTCCCTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGAGAAGAGATAGGGCCTaGGACTTGTCAATCCTTTCC +
Preference number: 5 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGRRDRA*DLSILS
Trigger: GGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTCT...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS TCA 90 bp CCTACGTCCACATCTAAAGAAGGCTGGCGCCACTGGAAGCTGGGCTaGCTTTTAGGCTTGGAATCATCATCTGCCAAGGGCTGGACACTC +
Preference number: 5 (lower is better)
Translates to: PTSTSKEGWRHWKLG*LLGLESSSAKGWTL
Trigger: GAGTGTCCAGCCCTTGGCAGATGATGATTCCAAGCCTAAAAGTCAGCCCAGCTTCCAGTGGCGCCAGCCTTCTTTAGATGTGGACGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CTGCAGGGAGCTTACTCCTCCCAAGTGGCCAAAGGAGGAGTCCAGAGGCAAGGGCTTCATAGTCTTCACTaGCTGGAAATGGCAGGACAT +
Preference number: 5 (lower is better)
Translates to: LQGAYSSQVAKGGVQRQGLHSLH*LEMAGH
Trigger: ATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAG...CCCTTGCCTCTGGACTCCTCCTTTGGCCACTTGGGAGGAGTAAGCTCCCTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACCCAGCTCTGCCTCCTaGTCACCCTGGCGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGPSSAS*SPWRKN
Trigger: GTTCTTCCGCCAGGGTGACAAGGAGGCAGAGCTGGG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS GCA 90 bp GCGCCACTGGAAGCTGGGCTGACTTTTAGGCTTGGAATCATCATCTaGCAAGGGCTGGACACTCTTTTCTGCCACATCAGTCAGCACAGA +
Preference number: 5 (lower is better)
Translates to: APLEAGLTFRLGIII*QGLDTLFCHISQHR
Trigger: TCTGTGCTGACTGATGTGGCAGAAAAGAGTGTCCAGCCCTTGGCAGATGATGATTCCAAGCCTAAAAGTCAGCCCAGCTTCCAGTGGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp TACATCCTGAAGGAAGACCTCAGAGCGTTTACAGACATTGGTCGGATGAGGGCTCTGACCACATCAGGGTaGGGGTCTCCTACGTCCACA +
Preference number: 5 (lower is better)
Translates to: YILKEDLRAFTDIGRMRALTTSG*GSPTST
Trigger: TGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAG...AGCCCTCATCCGACCAATGTCTGTAAACGCTCTGAGGTCTTCCTTCAGGATGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS CCA 90 bp AGGCTATGCCGAGTCAGCAACTCAAAAACAATGGTCCTCAGAGCGTaGTCATCGGCTGCCCGGTTCAAGGAAAAGACATCAAAGCACCAG +
Preference number: 5 (lower is better)
Translates to: RLCRVSNSKTMVLRA*SSAARFKEKTSKHQ
Trigger: CTGGTGCTTTGATGTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCTCTGAGGACCATTGTTTTTGAGTTGCTGACTCGGCATAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp AAAGAAGGCTGGCGCCACTGGAAGCTAGGAATAAGACCCCATACACACACCCAAACGATGCTTCGGAACTaGGGTTTCTCTTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: KEGWRHWKLGIRPHTHTQTMLRN*GFSSAL
Trigger: CAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCGT...TTGGGTGTGTGTATGGGGTCTTATTCCTAGCTTCCAGTGGCGCCAGCCTTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CAA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACGATAGGGCCTTGGACTaGTCAATCCTTTCCAACTGC +
Preference number: 5 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHDRALD*SILSNC
Trigger: GCAGTTGGAAAGGATTGACAAGTCCAAGGCCCTATC...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS GCA 90 bp AGTCAGCAACTCAAAAACAATGGTCCTCAGAGCGTGGTCATCGGCTaGCCGGTTCAAGGAAAAGACATCAAAGCACCAGAGGTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: SQQLKNNGPQSVVIG*PVQGKDIKAPEVQV
Trigger: AACCTGGACCTCTGGTGCTTTGATGTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCTCTGAGGACCATTGTTTTTGAGTTGCTGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CAAGGGAATGGGGCTGAAGAAGTGCAAGTATGGGATCAAGAGGATGTCCCCCACAGAAGAGATAGGGCCTaGGACTTGTCAATCCTTTCC +
Preference number: 5 (lower is better)
Translates to: QGNGAEEVQVWDQEDVPHRRDRA*DLSILS
Trigger: GGAAAGGATTGACAAGTCCAAGGCCCTATCTCTTCT...GTGGGGGACATCCTCTTGATCCCATACTTGCACTTCTTCAGCCCCATTCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGACAGAGGTCCAGGTTCTaGAGACAGTTGTGGACTGCA +
Preference number: 5 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGQRSRF*RQLWTA
Trigger: TGCAGTCCACAACTGTCTCAAGAACCTGGACCTCTG...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp CCCTTGGAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAAGCACCGATCGATCATaGTACAGGATGGCACATTCT +
Preference number: 5 (lower is better)
Translates to: PLEQMGEPVLMDSANDIESTDRS*YRMAHS
Trigger: AGAATGTGCCATCCTGTACAATGATCGATCGGTGCT...TTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTCCAAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGATCAATGGACATCTGGTaGGTGATGCCACTTGCTGCC +
Preference number: 5 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGSMDIW*VMPLAA
Trigger: GGCAGCAAGTGGCATCACCAACCAGATGTCCATTGA...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp TGGATAGTGCTAATGACATCGAAGACTTTGGACTCAGTGAGGACCTGGTCAGCCAGATTCCCATTCTGGTaGTGCTCATCTTCTGCAGGG +
Preference number: 5 (lower is better)
Translates to: WIVLMTSKTLDSVRTWSARFPFW*CSSSAG
Trigger: CCCTGCAGAAGATGAGCACAACCAGAATGGGAATCT...GGCTGACCAGGTCCTCACTGAGTCCAAAGTCTTCGATGTCATTAGCACTATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS GCA 90 bp CTCATCAGAAACACTGTGGGAATCTTAAAGCGGCTGATGAGGCTATaGCGAGTCAGCAACTCAAAAACAATGGTCCTCAGAGCGTGGTCA +
Preference number: 5 (lower is better)
Translates to: LIRNTVGILKRLMRL*RVSNSKTMVLRAWS
Trigger: TGACCACGCTCTGAGGACCATTGTTTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCGCTTTAAGATTCCCACAGTGTTTCTGATGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS GCA 90 bp TTTAGGCTTGGAATCATCATCTGCCAAGGGCTGGACACTCTTTTCTaGCACATCAGTCAGCACAGAGAAGGTTGGCTCCACAATGAAGTC +
Preference number: 5 (lower is better)
Translates to: FRLGIIICQGLDTLF*HISQHREGWLHNEV
Trigger: GACTTCATTGTGGAGCCAACCTTCTCTGTGCTGACTGATGTGGCAGAAAAGAGTGTCCAGCCCTTGGCAGATGATGATTCCAAGCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CCA 90 bp ATCCTTTCCAACTGCTGCAGTGCTGTCTTCATAGTCTTCACTTGCTaGAAATGGCAGGACATGTCTGTGGCCAACACCATCTCGATAACC +
Preference number: 5 (lower is better)
Translates to: ILSNCCSAVFIVFTC*KWQDMSVANTISIT
Trigger: GGTTATCGAGATGGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAGACAGCACTGCAGCAGTTGGAAAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp GCACGGAAACTGACCACATCAGGGTTGGGGTCTCCTACGTCCACATCTAAAGAACTTCATAGTCTTCACTaGCTGGAAATGGCAGGACAT +
Preference number: 5 (lower is better)
Translates to: ARKLTTSGLGSPTSTSKELHSLH*LEMAGH
Trigger: ATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAG...TTCTTTAGATGTGGACGTAGGAGACCCCAACCCTGATGTGGTCAGTTTCCGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CAA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTTTAATCCACATTTTCTaGCTGGGGGCTGACTTCAGC +
Preference number: 5 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFLIHIF*LGADFS
Trigger: GCTGAAGTCAGCCCCCAGCAAGAAAATGTGGATTAA...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
CDS-3UTR CAA 90 bp GGGACTGAGGGAACCCCCAAAATGTATTGCTTAGAAACTTGGAGGCAAGAAGGAAGCACCGATCGATCATaGTACAGGATGGCACATTCT +
Preference number: 5 (lower is better)
Translates to: GTEGTPKMYCLETWRQEGSTDRS*YRMAHS
Trigger: AGAATGTGCCATCCTGTACAATGATCGATCGGTGCT...TCCTTCTTGCCTCCAAGTTTCTAAGCAATACATTTTGGGGGTTCCCTCAGTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp ATACACACACCCAATTCCAGATATAAGACCCAACCCTCTTCAGAACCTACTTCTCAGAGGTCCAGGTTCTaGAGACAGTTGTGGACTGCA +
Preference number: 5 (lower is better)
Translates to: IHTPNSRYKTQPSSEPTSQRSRF*RQLWTA
Trigger: TGCAGTCCACAACTGTCTCAAGAACCTGGACCTCTG...AGAAGTAGGTTCTGAAGAGGGTTGGGTCTTATATCTGGAATTGGGTGTGTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS-3UTR CAA 90 bp GAGCAGATGGGGGAACCAGTCCTGATGGATAGTGCTAATGACATCGAAGACTTTTGTCTAGGATTTGCCTaGTCTCATCAATGTAGACAG +
Preference number: 5 (lower is better)
Translates to: EQMGEPVLMDSANDIEDFCLGFA*SHQCRQ
Trigger: CTGTCTACATTGATGAGACAAGGCAAATCCTAGACA...AAAGTCTTCGATGTCATTAGCACTATCCATCAGGACTGGTTCCCCCATCTGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS-3UTR CAA 90 bp ATACACACACCCAATTCCAGATATAAGACCCAACCCTCTTCAGAACCTACTTCTGATAGGGCCTTGGACTaGTCAATCCTTTCCAACTGC +
Preference number: 5 (lower is better)
Translates to: IHTPNSRYKTQPSSEPTSDRALD*SILSNC
Trigger: GCAGTTGGAAAGGATTGACAAGTCCAAGGCCCTATC...AGAAGTAGGTTCTGAAGAGGGTTGGGTCTTATATCTGGAATTGGGTGTGTGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226468.2
CDS CCA 72 bp AGGCAGTGCACCATGCCTGTGCGGAGAAGGAAGCAATaGACAGTCTGGGTCACGTCGGCTGCGTGGATCTGG +
Preference number: 6 (lower is better)
Translates to: RQCTMPVRRRKQ*TVWVTSAAWIW
Trigger: CCAGATCCACGCAGCCGACGTGACCCAGACTGTCCATTGCTTCCTTCTCCGCACAGGCATGGTGCACTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS GCA 72 bp AGCATGCACGATGCTTCGGAACTTGGGTTTCTCTTCTaGCCTGCGACCTTTGGCTCGGGTCTGCTGGGTGAA +
Preference number: 6 (lower is better)
Translates to: SMHDASELGFLF*PATFGSGLLGE
Trigger: TTCACCCAGCAGACCCGAGCCAAAGGTCGCAGGGCAGAAGAGAAACCCAAGTTCCGAAGCATCGTGCATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS TCA 72 bp GGCTGCAGCAAAGATGATGGCCAAGACCTCAATCTCTaGCAGGCAGTGCACCATGCCTGTGCGGAGAAGGAA +
Preference number: 6 (lower is better)
Translates to: GCSKDDGQDLNL*QAVHHACAEKE
Trigger: TTCCTTCTCCGCACAGGCATGGTGCACTGCCTGTCAGAGATTGAGGTCTTGGCCATCATCTTTGCTGCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CCA 72 bp TCTTCCTCACAGGGGGACAGTTCATCAATGGACATCTaGTTGGTGATGCCACTTGCTGCCCGTTCCTTCCAC +
Preference number: 6 (lower is better)
Translates to: SSSQGDSSSMDI*LVMPLAARSFH
Trigger: GTGGAAGGAACGGGCAGCAAGTGGCATCACCAACCAGATGTCCATTGATGAACTGTCCCCCTGTGAGGAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS CCA 72 bp TCAAAGCACCAGAGGTCCAGGTTCTTGAGACAGTTGTaGACTGCAGTAGAGTATGTGGGGCCCACAGAGGTA +
Preference number: 6 (lower is better)
Translates to: SKHQRSRFLRQL*TAVEYVGPTEV
Trigger: TACCTCTGTGGGCCCCACATACTCTACTGCAGTCCACAACTGTCTCAAGAACCTGGACCTCTGGTGCTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS CAA 90 bp GGTGATGCCACTTGCTGCCCGTTCCTTCCACTTCTGTTTGTTCTCTaGAATGTACTTGGTCCAGGTGGCACGGAAACTGACCACATCAGG +
Preference number: 6 (lower is better)
Translates to: GDATCCPFLPLLFVL*NVLGPGGTETDHIR
Trigger: CCTGATGTGGTCAGTTTCCGTGCCACCTGGACCAAGTACATTCAAGAGAACAAACAGAAGTGGAAGGAACGGGCAGCAAGTGGCATCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS GCA 72 bp CTCAAAAACAATGGTCCTCAGAGCGTGGTCATCGGCTaGCCGGTTCAAGGAAAAGACATCAAAGCACCAGAG +
Preference number: 6 (lower is better)
Translates to: LKNNGPQSVVIG*PVQGKDIKAPE
Trigger: CTCTGGTGCTTTGATGTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCTCTGAGGACCATTGTTTTTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS GCA 72 bp TCCAACTGCTGCAGTGCTGTCTTCATAGTCTTCACTTaGTGGAAATGGCAGGACATGTCTGTGGCCAACACC +
Preference number: 6 (lower is better)
Translates to: SNCCSAVFIVFT*WKWQDMSVANT
Trigger: GGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAGACAGCACTGCAGCAGTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CCA 72 bp CGAGTCAGCAACTCAAAAACAATGGTCCTCAGAGCGTaGTCATCGGCTGCCCGGTTCAAGGAAAAGACATCA +
Preference number: 6 (lower is better)
Translates to: RVSNSKTMVLRA*SSAARFKEKTS
Trigger: TGATGTCTTTTCCTTGAACCGGGCAGCCGATGACCACGCTCTGAGGACCATTGTTTTTGAGTTGCTGACTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS GCA 72 bp GAAGCTGGGCTGACTTTTAGGCTTGGAATCATCATCTaGCAAGGGCTGGACACTCTTTTCTGCCACATCAGT +
Preference number: 6 (lower is better)
Translates to: EAGLTFRLGIII*QGLDTLFCHIS
Trigger: ACTGATGTGGCAGAAAAGAGTGTCCAGCCCTTGGCAGATGATGATTCCAAGCCTAAAAGTCAGCCCAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023132.5
ENSMUST00000227955.2
CDS CCA 72 bp AACTGCTGCAGTGCTGTCTTCATAGTCTTCACTTGCTaGAAATGGCAGGACATGTCTGTGGCCAACACCATC +
Preference number: 6 (lower is better)
Translates to: NCCSAVFIVFTC*KWQDMSVANTI
Trigger: GATGGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAGACAGCACTGCAGCAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CCA 72 bp TGCAGTGCTGTCTTCATAGTCTTCACTTGCTGGAAATaGCAGGACATGTCTGTGGCCAACACCATCTCGATA +
Preference number: 6 (lower is better)
Translates to: CSAVFIVFTCWK*QDMSVANTISI
Trigger: TATCGAGATGGTGTTGGCCACAGACATGTCCTGCCATTTCCAGCAAGTGAAGACTATGAAGACAGCACTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CAA 72 bp GTTCCCGAAGCTCATCTTCAGTGTCTAGGATTTGCCTaGTCTCATCAATGTAGACAGCTTCCAGCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: VPEAHLQCLGFA*SHQCRQLPAGK
Trigger: CTTCCCTGCTGGAAGCTGTCTACATTGATGAGACAAGGCAAATCCTAGACACTGAAGATGAGCTTCGGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS CAA 90 bp CTGACCGAAGTTCCCGAAGCTCATCTTCAGTGTCTAGGATTTGCCTaGTCTCATCAATGTAGACAGCTTCCAGCAGGGAAGCTGTGTATT +
Preference number: 6 (lower is better)
Translates to: LTEVPEAHLQCLGFA*SHQCRQLPAGKLCI
Trigger: AATACACAGCTTCCCTGCTGGAAGCTGTCTACATTGATGAGACAAGGCAAATCCTAGACACTGAAGATGAGCTTCGGGAACTTCGGTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000226493.2
ENSMUST00000227955.2
CDS TCA 72 bp TCATCCTGCATCATTCGAAAGACAGAGCTGATGTGGTaGTTCTCCAGCACCGATCGATCATTGTACAGGATG +
Preference number: 6 (lower is better)
Translates to: SSCIIRKTELMW*FSSTDRSLYRM
Trigger: CATCCTGTACAATGATCGATCGGTGCTGGAGAATCACCACATCAGCTCTGTCTTTCGAATGATGCAGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS GCA 72 bp AACACTGTGGGAATCTTAAAGCGGCTGATGAGGCTATaGCGAGTCAGCAACTCAAAAACAATGGTCCTCAGA +
Preference number: 6 (lower is better)
Translates to: NTVGILKRLMRL*RVSNSKTMVLR
Trigger: TCTGAGGACCATTGTTTTTGAGTTGCTGACTCGGCATAGCCTCATCAGCCGCTTTAAGATTCCCACAGTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CAA 72 bp TCGATAACCAGGGCCCGCAGCTCTGCAAATTCATCCTaGGTGAGATTGATAAAAATGTTCATCTCATCATCC +
Preference number: 6 (lower is better)
Translates to: SITRARSSANSS*VRLIKMFISSS
Trigger: GGATGATGAGATGAACATTTTTATCAATCTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTGGTTATCGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CAA 90 bp TCGATAACCAGGGCCCGCAGCTCTGCAAATTCATCCTTGGTGAGATaGATAAAAATGTTCATCTCATCATCCTGCATCATTCGAAAGACA +
Preference number: 6 (lower is better)
Translates to: SITRARSSANSSLVR*IKMFISSSCIIRKT
Trigger: TGTCTTTCGAATGATGCAGGATGATGAGATGAACATTTTTATCAATCTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTGGTTATCGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CAA 90 bp AACACCATCTCGATAACCAGGGCCCGCAGCTCTGCAAATTCATCCTaGGTGAGATTGATAAAAATGTTCATCTCATCATCCTGCATCATT +
Preference number: 6 (lower is better)
Translates to: NTISITRARSSANSS*VRLIKMFISSSCII
Trigger: AATGATGCAGGATGATGAGATGAACATTTTTATCAATCTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCTGGTTATCGAGATGGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2
CDS CAA 72 bp AGGGCCCGCAGCTCTGCAAATTCATCCTTGGTGAGATaGATAAAAATGTTCATCTCATCATCCTGCATCATT +
Preference number: 6 (lower is better)
Translates to: RARSSANSSLVR*IKMFISSSCII
Trigger: AATGATGCAGGATGATGAGATGAACATTTTTATCAATCTCACCAAGGATGAATTTGCAGAGCTGCGGGCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023132.5
ENSMUST00000226468.2
ENSMUST00000227955.2