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Pregenerated sensors for PDCL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026078

Ensembl transcript IDs: ENSMUST00000027247.11, ENSMUST00000193489.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGCTAGCTGGTAACTATGCAAACCAGACTGGCCTTGATCTCACATaGCCTGCCTGCCCCTGTCTCCCAGTGCTGAGATTAAAGGCATGT +
Preference number: 1 (lower is better)
Translates to: WLAGNYANQTGLDLT*PACPCLPVLRLKAC
Trigger: ACATGCCTTTAATCTCAGCACTGGGAGACAGGGGCAGGCAGGTCATGTGAGATCAAGGCCAGTCTGGTTTGCATAGTTACCAGCTAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR CCA 90 bp AGAAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTaGCTAGCTGGTAACTATGCAAACCAGACTGGCCTTGATCTCACA +
Preference number: 1 (lower is better)
Translates to: RRAAWFGDRVLVTQP*LAGNYANQTGLDLT
Trigger: TGTGAGATCAAGGCCAGTCTGGTTTGCATAGTTACCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR-3UTR TCA 90 bp AAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGCTGGGGCCTTGATCTCACATaGCCTGCCTGCCCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: KSCLVWRQGLGNAALASWGLDLT*PACPCL
Trigger: GAGACAGGGGCAGGCAGGTCATGTGAGATCAAGGCC...CCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR CAA 90 bp AGGACCTTACAGCCAAGAAGAGCTGCTTGGTTTGGAGACAGGGTCTaGGTAACGCAGCCCTGGCTAGCTGGTAACTATGCAAACCAGACT +
Preference number: 2 (lower is better)
Translates to: RTLQPRRAAWFGDRV*VTQPWLAGNYANQT
Trigger: AGTCTGGTTTGCATAGTTACCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCTTGGCTGTAAGGTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR-3UTR TCA 90 bp AAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGCTGGGACATGGCAGTGAGCTaGAATCTGTCAGCTAATTTG +
Preference number: 2 (lower is better)
Translates to: KSCLVWRQGLGNAALASWDMAVS*NLSANL
Trigger: CAAATTAGCTGACAGATTTCAGCTCACTGCCATGTC...CCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR-3UTR CCA 90 bp CCAAGAAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGTTTACCTGGAAGACTaGGCTGAAAGCAAACAGACA +
Preference number: 2 (lower is better)
Translates to: PRRAAWFGDRVLVTQPWLVYLED*AESKQT
Trigger: TGTCTGTTTGCTTTCAGCCCAGTCTTCCAGGTAAAC...TAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR-3UTR CCA 90 bp AAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGCTGGACTACAAAGAATAGCTaGTGTCTTAACAGCCATAGA +
Preference number: 2 (lower is better)
Translates to: KSCLVWRQGLGNAALASWTTKNS*CLNSHR
Trigger: TCTATGGCTGTTAAGACACCAGCTATTCTTTGTAGT...CCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR CCA 72 bp GCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTaGCTAGCTGGTAACTATGCAAACCAGACTGGCCTT +
Preference number: 3 (lower is better)
Translates to: AWFGDRVLVTQP*LAGNYANQTGL
Trigger: AAGGCCAGTCTGGTTTGCATAGTTACCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR-3UTR CAA 90 bp CAGGACCTTACAGCCAAGAAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACCAAACCAGACTGGCCTaGATCTCACATGACCTGCCT +
Preference number: 3 (lower is better)
Translates to: QDLTAKKSCLVWRQGLGNQTRLA*ISHDLP
Trigger: AGGCAGGTCATGTGAGATCAAGGCCAGTCTGGTTTG...GTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCTTGGCTGTAAGGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
CDS-3UTR TCA 90 bp CCAAGAAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGACAGGGCCCCGGACTaGGGACAGCAGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: PRRAAWFGDRVLVTQPWLDRAPD*GQQQVL
Trigger: CAGGACCTGCTGCTGTCCTCAGTCCGGGGCCCTGTC...TAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
3UTR CAA 72 bp CAGCCAAGAAGAGCTGCTTGGTTTGGAGACAGGGTCTaGGTAACGCAGCCCTGGCTAGCTGGTAACTATGCA +
Preference number: 4 (lower is better)
Translates to: QPRRAAWFGDRV*VTQPWLAGNYA
Trigger: TGCATAGTTACCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTTCTTGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
CDS-3UTR TCA 90 bp CTGAGATTAAAGGCATGTGCCACTACAAAGAATAGCTGGTGTCTTAACAGCCATTGTCTTGATCGCTCCTaGCTCAGACAGTTTCCACTC +
Preference number: 4 (lower is better)
Translates to: LRLKACATTKNSWCLNSHCLDRS*LRQFPL
Trigger: GAGTGGAAACTGTCTGAGTCAGGAGCGATCAAGACA...ATGGCTGTTAAGACACCAGCTATTCTTTGTAGTGGCACATGCCTTTAATCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
CDS-3UTR TCA 90 bp TTAAAGGCATGTGCCACTACAAAGAATAGCTGGTGTCTTAACAGCCATAGAGAAGTTCATCCTCCTCACTaGACTCATCCTCGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: LKACATTKNSWCLNSHREVHPPH*THPRSP
Trigger: AGGAGAACGAGGATGAGTTCAGTGAGGAGGATGAAC...TTCTCTATGGCTGTTAAGACACCAGCTATTCTTTGTAGTGGCACATGCCTTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
CDS GCA 90 bp GCCCAGGAGGCCGGAGGGACCGCACCCGCCCTCTCGCAGTGCGCCTaGGCCGGGCCTCCCCGCAGTCCGCCGAGTTCTGTAACTAATCCA +
Preference number: 5 (lower is better)
Translates to: AQEAGGTAPALSQCA*AGPPRSPPSSVTNP
Trigger: TGGATTAGTTACAGAACTCGGCGGACTGCGGGGAGGCCCGGCGCAGGCGCACTGCGAGAGGGCGGGTGCGGTCCCTCCGGCCTCCTGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193489.2
CDS-3UTR CAA 90 bp AAGAGCTGCTTGGTTTGGAGACAGGGTCTTGGTAACGCAGCCCTGGCTAGCTGGAGGGGAATCCCTTGTTaGTACAGGTGTAAGATCACC +
Preference number: 5 (lower is better)
Translates to: KSCLVWRQGLGNAALASWRGIPC*YRCKIT
Trigger: GGTGATCTTACACCTGTACAAACAAGGGATTCCCCT...CCAGCTAGCCAGGGCTGCGTTACCAAGACCCTGTCTCCAAACCAAGCAGCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027247.11
CDS GCA 72 bp CAGGAGGCCGGAGGGACCGCACCCGCCCTCTCGCAGTaGGCCTGCGCCGGGCCTCCCCGCAGTCCGCCGAGT +
Preference number: 6 (lower is better)
Translates to: QEAGGTAPALSQ*ACAGPPRSPPS
Trigger: ACTCGGCGGACTGCGGGGAGGCCCGGCGCAGGCGCACTGCGAGAGGGCGGGTGCGGTCCCTCCGGCCTCCTG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193489.2
CDS GCA 72 bp GCCGGAGGGACCGCACCCGCCCTCTCGCAGTGCGCCTaGGCCGGGCCTCCCCGCAGTCCGCCGAGTTCTGTA +
Preference number: 6 (lower is better)
Translates to: AGGTAPALSQCA*AGPPRSPPSSV
Trigger: TACAGAACTCGGCGGACTGCGGGGAGGCCCGGCGCAGGCGCACTGCGAGAGGGCGGGTGCGGTCCCTCCGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193489.2
CDS GCA 72 bp TCCACTCGGTGTCTGCATTGGGGTCCGGAGCAGGAGTaGCCAGCCCAGGAGGCCGGAGGGACCGCACCCGCC +
Preference number: 6 (lower is better)
Translates to: STRCLHWGPEQE*PAQEAGGTAPA
Trigger: GGCGGGTGCGGTCCCTCCGGCCTCCTGGGCTGGGCACTCCTGCTCCGGACCCCAATGCAGACACCGAGTGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193489.2