Pregenerated sensors for PDCD5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030417Ensembl transcript IDs: ENSMUST00000118501.8, ENSMUST00000120714.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCTCCGGAATCTCCATGCTTGGCCTaGAACTCGGCCAGCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GNKVNIYKVVTVLDTAPESPCLA*NSASLC Trigger: GCAGAGGCTGGCCGAGTTGCAGGCCAAGCATGGAGA...TTCCGGAGCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR GCA 90 bp | ATAGACAGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCAACTCGGCCAGCCTCTaGTTCCTCAGCGCCTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: IDREQSKHLQGGDCPRHCNSASL*FLSASS Trigger: ACTTGAGGCGCTGAGGAAGCAGAGGCTGGCCGAGTT...GCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCTGTCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR TCA 90 bp | GCATATATAGACAGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACTGGCCCGGGCTGACTaGTCCAGAACTTGGGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: AYIDREQSKHLQGGDCPRLARAD*SRTWAK Trigger: CTTAGCCCAAGTTCTGGATCAGTCAGCCCGGGCCAG...TCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCTGTCTATATATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118501.8 ENSMUST00000120714.2 |
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| CDS-3UTR CCA 90 bp | GCATATATAGACAGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACAGGATCTCCATGCTTaGCCTGCAACTCGGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: AYIDREQSKHLQGGDCPRQDLHA*PATRPA Trigger: GGCTGGCCGAGTTGCAGGCCAAGCATGGAGATCCTG...TCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCTGTCTATATATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR TCA 90 bp | GCCTGTGATTCTGAAACACCCAAACTGTTTGAGTTTGAGGTACAAGTTTATTTTCTGGCCCGGGCTGACTaGTCCAGAACTTGGGCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: ACDSETPKLFEFEVQVYFLARAD*SRTWAK Trigger: CTTAGCCCAAGTTCTGGATCAGTCAGCCCGGGCCAG...AAAATAAACTTGTACCTCAAACTCAAACAGTTTGGGTGTTTCAGAATCACAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR GCA 90 bp | AAGGCATATATAGACAGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTTCACCAGGATCTCCATaGTTGGCCTGCAACTCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: KAYIDREQSKHLQGGDCPSPGSP*LACNSA Trigger: GGCCGAGTTGCAGGCCAAGCATGGAGATCCTGGTGA...AGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCTGTCTATATATGCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR TCA 90 bp | GGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCTCCGGAATTTCTGTCTGTTGGCTaGCTTTCTCAAGTATTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: GNKVNIYKVVTVLDTAPEFLSVG*LSQVFL Trigger: TAGAAATACTTGAGAAAGTCAGCCAACAGACAGAAA...TTCCGGAGCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118501.8 ENSMUST00000120714.2 |
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| CDS-3UTR TCA 90 bp | AGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCTCCGGATTTCTGTCTGTTGGCTaGCTTTCTCAAGTATTTCTA | + |
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Preference number: 4 (lower is better) Translates to: REQSKHLQGGDCPRHCSGFLSVG*LSQVFL Trigger: TAGAAATACTTGAGAAAGTCAGCCAACAGACAGAAA...TCCGGAGCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118501.8 ENSMUST00000120714.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGAACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCTCCGTTCTTTTCTGTCTGTTaGCTGACTTTCTCAAGTATT | + |
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Preference number: 4 (lower is better) Translates to: TGNKVNIYKVVTVLDTAPFFSVC*LTFSSI Trigger: AATACTTGAGAAAGTCAGCCAACAGACAGAAAAGAA...CGGAGCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTTCCCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118501.8 ENSMUST00000120714.2 |
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| CDS-3UTR CCA 90 bp | GCCTGTGATTCTGAAACACCCAAACTGTTTGAGTTTGAGGTACAAGTTTATTTTTTCTTTTCTGTCTGTTaGCTGACTTTCTCAAGTATT | + |
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Preference number: 4 (lower is better) Translates to: ACDSETPKLFEFEVQVYFFFSVC*LTFSSI Trigger: AATACTTGAGAAAGTCAGCCAACAGACAGAAAAGAA...AAAATAAACTTGTACCTCAAACTCAAACAGTTTGGGTGTTTCAGAATCACAGGC 36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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| CDS-3UTR CAA 90 bp | AACAAAGTAAACATTTACAAGGTGGTGACTGTCCTAGACACTGCTCCGGAAGTCTTTCTTTTCTGTCTGTaGGCTGACTTTCTCAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: NKVNIYKVVTVLDTAPEVFLFCL*ADFLKY Trigger: ATACTTGAGAAAGTCAGCCAACAGACAGAAAAGAAA...GACTTCCGGAGCAGTGTCTAGGACAGTCACCACCTTGTAAATGTTTACTTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118501.8 ENSMUST00000120714.2 |
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| CDS-3UTR CAA 90 bp | GCCTGTGATTCTGAAACACCCAAACTGTTTGAGTTTGAGGTACAAGTTTATTTTTTTCTTTTCTGTCTGTaGGCTGACTTTCTCAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: ACDSETPKLFEFEVQVYFFLFCL*ADFLKY Trigger: ATACTTGAGAAAGTCAGCCAACAGACAGAAAAGAAA...AAAATAAACTTGTACCTCAAACTCAAACAGTTTGGGTGTTTCAGAATCACAGGC 37% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000118501.8 |
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