Pregenerated sensors for PDCD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014771Ensembl transcript IDs: ENSMUST00000054450.7, ENSMUST00000154293.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGCTTACTGGCCTGCTCAGCCTGCTTTCTTATACTCCCAGGGGTaGCACCACCCACACATTGATTTGGGCTTGCCAACATCAGTCAAT | + |
|
Preference number: 1 (lower is better) Translates to: AAYWPAQPAFLYSQG*HHPHIDLGLPTSVN Trigger: ATTGACTGATGTTGGCAAGCCCAAATCAATGTGTGGGTGGTGCCACCCCTGGGAGTATAAGAAAGCAGGCTGAGCAGGCCAGTAAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CCA 90 bp | GAACTTTCTGTAATACATTCTGAGCAGACAGCATTGCTGGTCATTTaGGATGTGAAGCCACACTCACACCTCTGTCTGAGTCTTTTTCCT | + |
|
Preference number: 1 (lower is better) Translates to: ELSVIHSEQTALLVI*DVKPHSHLCLSLFP Trigger: AGGAAAAAGACTCAGACAGAGGTGTGAGTGTGGCTTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 90 bp | CTTTTGTGGAGGAAAGGGCTTATTTCAGCATATAGTTATAGTGTATaGGAGAATGCTGCTTACTGGCCTGCTCAGCCTGCTTTCTTATAC | + |
|
Preference number: 1 (lower is better) Translates to: LLWRKGLISAYSYSV*ENAAYWPAQPAFLY Trigger: GTATAAGAAAGCAGGCTGAGCAGGCCAGTAAGCAGCATTCTCTCATACACTATAACTATATGCTGAAATAAGCCCTTTCCTCCACAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 90 bp | TTACTTTTAAAGCCCTTGGCATTTAGAACTTTCTGTAATACATTCTaGGCAGACAGCATTGCTGGTCATTTGGGATGTGAAGCCACACTC | + |
|
Preference number: 1 (lower is better) Translates to: LLLKPLAFRTFCNTF*ADSIAGHLGCEATL Trigger: GAGTGTGGCTTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAAATGCCAAGGGCTTTAAAAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 90 bp | CTTTGTGTAATGTGCTGTAGTCAGAAAGTCAATGGTAGTAGAGTGTaGTGTGGCCTCTTAAAATTCAGAGTGAACAAGAATGCTAGGGTA | + |
|
Preference number: 1 (lower is better) Translates to: LCVMCCSQKVNGSRV*CGLLKFRVNKNARV Trigger: TACCCTAGCATTCTTGTTCACTCTGAATTTTAAGAGGCCACATCACACTCTACTACCATTGACTTTCTGACTACAGCACATTACACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR TCA 90 bp | GCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCCGTTTATGTCTAGCTCCAGATGTAATCAAGTaGGTGCCTAGCTGGGTACAT | + |
|
Preference number: 2 (lower is better) Translates to: ASLTEPVLKIPSPRLCLAPDVIK*VPSWVH Trigger: ATGTACCCAGCTAGGCACTCACTTGATTACATCTGG...AGCTAGACATAAACGGGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CAA 90 bp | CCTTGGCATTTAGAACTTTCTGTAATACATTCTGAGCAGACAGCATaGCTGGTCATTTGGGATGTGAAGCCACACTCACACCTCTGTCTG | + |
|
Preference number: 2 (lower is better) Translates to: PWHLELSVIHSEQTA*LVIWDVKPHSHLCL Trigger: CAGACAGAGGTGTGAGTGTGGCTTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAAATGCCAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR GCA 90 bp | CTTTCTTATACTCCCAGGGGTGGCACCACCCACACATTGATTTGGGCTTGCCAATTAAGATTTAGTCATTaGTTGGCAGTGTATCCTATG | + |
|
Preference number: 2 (lower is better) Translates to: LSYTPRGGTTHTLIWACQLRFSH*LAVYPM Trigger: CATAGGATACACTGCCAAGCAATGACTAAATCTTAA...TTGGCAAGCCCAAATCAATGTGTGGGTGGTGCCACCCCTGGGAGTATAAGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR GCA 90 bp | GCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCCGTTTATGTCTAGCTATGTTTGCCACTAATTaGTGTAAATTCCTTCCACAG | + |
|
Preference number: 2 (lower is better) Translates to: ASLTEPVLKIPSPRLCLAMFATN*CKFLPQ Trigger: CTGTGGAAGGAATTTACAGCAATTAGTGGCAAACAT...AGCTAGACATAAACGGGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR CCA 90 bp | CCACACTCACACCTCTGTCTGAGTCTTTTTCCTGAGTCAGTTTCTACATGTTTGCCCTTAAAAGTAGCCTaGTTCCTCATAGGAATCTCT | + |
|
Preference number: 2 (lower is better) Translates to: PHSHLCLSLFPESVSTCLPLKVA*FLIGIS Trigger: AGAGATTCCTATGAGGAACCAGGCTACTTTTAAGGG...CAAACATGTAGAAACTGACTCAGGAAAAAGACTCAGACAGAGGTGTGAGTGTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR TCA 90 bp | AAGGGCTTATTTCAGCATATAGTTATAGTGTATGAGAGAATGCTGCTTACTGGCACTCACACCTCTGTCTaGGTCTTTTTCCTGAGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: KGLFQHIVIVYERMLLTGTHTSV*VFFLSQ Trigger: CTGACTCAGGAAAAAGACTCAGACAGAGGTGTGAGT...GCCAGTAAGCAGCATTCTCTCATACACTATAACTATATGCTGAAATAAGCCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR TCA 90 bp | AAGGGCTTATTTCAGCATATAGTTATAGTGTATGAGAGAATGCTGCTTACTGGCGACAGTGGTTTAAAGTaGGAAGGGATCTTGCAACCA | + |
|
Preference number: 2 (lower is better) Translates to: KGLFQHIVIVYERMLLTGDSGLK*EGILQP Trigger: TGGTTGCAAGATCCCTTCTCACTTTAAACCACTGTC...GCCAGTAAGCAGCATTCTCTCATACACTATAACTATATGCTGAAATAAGCCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CCA 72 bp | TATACTCCCAGGGGTGGCACCACCCACACATTGATTTaGGCTTGCCAACATCAGTCAATAGCCCCCACCCCC | + |
|
Preference number: 3 (lower is better) Translates to: YTPRGGTTHTLI*ACQHQSIAPTP Trigger: GGGGGTGGGGGCTATTGACTGATGTTGGCAAGCCCAAATCAATGTGTGGGTGGTGCCACCCCTGGGAGTATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CCA 72 bp | TGGCCTGCTCAGCCTGCTTTCTTATACTCCCAGGGGTaGCACCACCCACACATTGATTTGGGCTTGCCAACA | + |
|
Preference number: 3 (lower is better) Translates to: WPAQPAFLYSQG*HHPHIDLGLPT Trigger: TGTTGGCAAGCCCAAATCAATGTGTGGGTGGTGCCACCCCTGGGAGTATAAGAAAGCAGGCTGAGCAGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR GCA 72 bp | TGTATGAGAGAATGCTGCTTACTGGCCTGCTCAGCCTaGTTTCTTATACTCCCAGGGGTGGCACCACCCACA | + |
|
Preference number: 3 (lower is better) Translates to: CMRECCLLACSA*FLILPGVAPPT Trigger: TGTGGGTGGTGCCACCCCTGGGAGTATAAGAAAGCAGGCTGAGCAGGCCAGTAAGCAGCATTCTCTCATACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR GCA 72 bp | CTGAAAGATGGCTCAGGCCCACTCTACTCAGGTTACTaGTTCCAGGGCCAGTTTCTTCTCTCTTCACTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: LKDGSGPLYSGY*FQGQFLLSSLS Trigger: GGAAAGTGAAGAGAGAAGAAACTGGCCCTGGAAGCAGTAACCTGAGTAGAGTGGGCCTGAGCCATCTTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR CAA 90 bp | ACAGGCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCCGTTTATGTCTAGCATTGCTGGTCATTaGGGATGTGAAGCCACACTC | + |
|
Preference number: 3 (lower is better) Translates to: TGQSYRACSQDSLSPFMSSIAGH*GCEATL Trigger: GAGTGTGGCTTCACATCCCAAATGACCAGCAATGCT...AGACATAAACGGGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 72 bp | TTGCTTGGCAGTGTATCCTATGGAATACCCCACACCTaGAAGATGGCTCAGGCCCACTCTACTCAGGTTACT | + |
|
Preference number: 3 (lower is better) Translates to: LLGSVSYGIPHT*KMAQAHSTQVT Trigger: AGTAACCTGAGTAGAGTGGGCCTGAGCCATCTTTCAGGTGTGGGGTATTCCATAGGATACACTGCCAAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CCA 72 bp | GTAATACATTCTGAGCAGACAGCATTGCTGGTCATTTaGGATGTGAAGCCACACTCACACCTCTGTCTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: VIHSEQTALLVI*DVKPHSHLCLS Trigger: ACTCAGACAGAGGTGTGAGTGTGGCTTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 72 bp | ATTCCCTCTCCCCGTTTATGTCTAGCTCTGTCGAGTTaGCAAAACAAACCAAGACAGTGGTTTAAAGTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: IPSPRLCLALSS*QNKPRQWFKVR Trigger: TCTCACTTTAAACCACTGTCTTGGTTTGTTTTGTCAACTCGACAGAGCTAGACATAAACGGGGAGAGGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 72 bp | AAGCCCTTGGCATTTAGAACTTTCTGTAATACATTCTaGGCAGACAGCATTGCTGGTCATTTGGGATGTGAA | + |
|
Preference number: 3 (lower is better) Translates to: KPLAFRTFCNTF*ADSIAGHLGCE Trigger: TTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAAATGCCAAGGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR-3UTR CAA 90 bp | TTAGAACTTTCTGTAATACATTCTGAGCAGACAGCATTGCTGGTCATTTGGGATGTTGAGAATTCACTTTaGAGTGACAACTGGAAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: LELSVIHSEQTALLVIWDVENSL*SDNWKD Trigger: GTCTTTCCAGTTGTCACTCAAAAGTGAATTCTCAAC...ATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 72 bp | ATGTGCTGTAGTCAGAAAGTCAATGGTAGTAGAGTGTaGTGTGGCCTCTTAAAATTCAGAGTGAACAAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: MCCSQKVNGSRV*CGLLKFRVNKN Trigger: ATTCTTGTTCACTCTGAATTTTAAGAGGCCACATCACACTCTACTACCATTGACTTTCTGACTACAGCACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR TCA 72 bp | TCTTGGTGTAGATCTCTGATGTTGAGAATTCACTTTTaGGTGACAACTGGAAAGACCATTAACCTTTTAAGA | + |
|
Preference number: 3 (lower is better) Translates to: SWCRSLMLRIHF*VTTGKTINLLR Trigger: TCTTAAAAGGTTAATGGTCTTTCCAGTTGTCACTCAAAAGTGAATTCTCAACATCAGAGATCTACACCAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | TGGCTCAGGCCCACTCTACTCAGGTTACTGCTTCCAGGGCCAGTTTCTTCTCTCGCCGCCCGCCCACTTTaGTGGGAAACTGCTCGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: WLRPTLLRLLLPGPVSSLAARPL*WETARC Trigger: GCAGCGAGCAGTTTCCCAGCAAAGTGGGCGGGCGGC...GAGAGAAGAAACTGGCCCTGGAAGCAGTAACCTGAGTAGAGTGGGCCTGAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | ACAGGCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCCGTTTATGTCTTGGGAAACTGCTCGCTaGGCAGCCTCCAGGCCGGTG | + |
|
Preference number: 4 (lower is better) Translates to: TGQSYRACSQDSLSPFMSWETAR*AASRPV Trigger: CACCGGCCTGGAGGCTGCGCAGCGAGCAGTTTCCCA...AGACATAAACGGGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | GTGAAGCCACACTCACACCTCTGTCTGAGTCTTTTTCCTGAGTCAGTTTCTACACCGGCCCGGCAGCGGTaGGTACACCTGCAGCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: VKPHSHLCLSLFPESVSTPARQR*VHLQQE Trigger: TTCCTGCTGCAGGTGTACGCACCGCTGCCGGGCCGG...TGTAGAAACTGACTCAGGAAAAAGACTCAGACAGAGGTGTGAGTGTGGCTTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | CAGACTTGCTTACAGGCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCACTTTGCTGGGAAACTaGTCGCTGCGCAGCCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: QTCLQASLTEPVLKIPSPTLLGN*SLRSLQ Trigger: CTGGAGGCTGCGCAGCGAGCAGTTTCCCAGCAAAGT...GGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGCCTGTAAGCAAGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | GTGAAGCCACACTCACACCTCTGTCTGAGTCTTTTTCCTGAGTCAGTTTCTACAAGAAAGAGGCTGCGGTaGAAGGCGTCGTCCCGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VKPHSHLCLSLFPESVSTRKRLR*KASSRP Trigger: GGGCCGGGACGACGCCTTCCACCGCAGCCTCTTTCT...TGTAGAAACTGACTCAGGAAAAAGACTCAGACAGAGGTGTGAGTGTGGCTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | GTGAAGCCACACTCACACCTCTGTCTGAGTCTTTTTCCTGAGTCAGTTTCTACAGCCCGCCCACTTTGCTaGGAAACTGCTCGCTGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: VKPHSHLCLSLFPESVSTARPLC*ETARCA Trigger: TGCGCAGCGAGCAGTTTCCCAGCAAAGTGGGCGGGC...TGTAGAAACTGACTCAGGAAAAAGACTCAGACAGAGGTGTGAGTGTGGCTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CAA 72 bp | CTTTCTTATACTCCCAGGGGTGGCACCACCCACACATaGATTTGGGCTTGCCAACATCAGTCAATAGCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: LSYTPRGGTTHT*IWACQHQSIAP Trigger: GGGGGCTATTGACTGATGTTGGCAAGCCCAAATCAATGTGTGGGTGGTGCCACCCCTGGGAGTATAAGAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | GAAAGATGGCTCAGGCCCACTCTACTCAGGTTACTGCTTCCAGGGCCAGTTTCTCCTGTGAAGACAGTCTaGTCTGGTTCAAGGGCTATT | + |
|
Preference number: 4 (lower is better) Translates to: ERWLRPTLLRLLLPGPVSPVKTV*SGSRAI Trigger: AATAGCCCTTGAACCAGAGCAGACTGTCTTCACAGG...AGAAACTGGCCCTGGAAGCAGTAACCTGAGTAGAGTGGGCCTGAGCCATCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | TGGCTCAGGCCCACTCTACTCAGGTTACTGCTTCCAGGGCCAGTTTCTTCTCTCATATGTGATCTTCCTTaGATTCGTGCTTTGCCATGG | + |
|
Preference number: 4 (lower is better) Translates to: WLRPTLLRLLLPGPVSSLICDLP*IRALPW Trigger: CCATGGCAAAGCACGAATCCAAGGAAGATCACATAT...GAGAGAAGAAACTGGCCCTGGAAGCAGTAACCTGAGTAGAGTGGGCCTGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | GCCAGTCTTACAGAGCCTGTTCTCAAGATTCCCTCTCCCCGTTTATGTCTAGCTCTTGCTGCAGTAATGTaGCTGTTTGCACCTAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ASLTEPVLKIPSPRLCLALAAVM*LFAPRA Trigger: TGCTCTAGGTGCAAACAGGCACATTACTGCAGCAAG...AGCTAGACATAAACGGGGAGAGGGAATCTTGAGAACAGGCTCTGTAAGACTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR GCA 90 bp | GTCATTTGGGATGTGAAGCCACACTCACACCTCTGTCTGAGTCTTTTTCCTGAGTCTGATGCTCCTTGCTaGAGTAATGTGCCTGTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VIWDVKPHSHLCLSLFPESDAPC*SNVPVC Trigger: GCAAACAGGCACATTACTGCAGCAAGGAGCATCAGA...CTCAGGAAAAAGACTCAGACAGAGGTGTGAGTGTGGCTTCACATCCCAAATGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR TCA 90 bp | ATACAACAGCTCTGTTCAGGTTTGTCTTGGTGTAGATCTCTGATGTTGAGAATTGATGGGCTCCAGACTTaGGCTGGAGGCACACACATT | + |
|
Preference number: 4 (lower is better) Translates to: IQQLCSGLSWCRSLMLRIDGLQT*AGGTHI Trigger: AATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATC...AATTCTCAACATCAGAGATCTACACCAAGACAAACCTGAACAGAGCTGTTGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CAA 72 bp | TTAGAACTTTCTGTAATACATTCTGAGCAGACAGCATaGCTGGTCATTTGGGATGTGAAGCCACACTCACAC | + |
|
Preference number: 4 (lower is better) Translates to: LELSVIHSEQTA*LVIWDVKPHSH Trigger: GTGTGAGTGTGGCTTCACATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | CATTTAGAACTTTCTGTAATACATTCTGAGCAGACAGCATTGCTGGTCATTTGGATTCGTGCTTTGCCATaGAATCTAGTTCTTCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: HLELSVIHSEQTALLVIWIRALP*NLVLPQ Trigger: CTGAGGAAGAACTAGATTCCATGGCAAAGCACGAAT...CCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | AAGGGCTTATTTCAGCATATAGTTATAGTGTATGAGAGAATGCTGCTTACTGGCGAAGACAGTCTGCTCTaGTTCAAGGGCTATTTTAGA | + |
|
Preference number: 4 (lower is better) Translates to: KGLFQHIVIVYERMLLTGEDSLL*FKGYFR Trigger: TCTAAAATAGCCCTTGAACCAGAGCAGACTGTCTTC...GCCAGTAAGCAGCATTCTCTCATACACTATAACTATATGCTGAAATAAGCCCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| 3UTR CAA 72 bp | GGAAAGACCATTAACCTTTTAAGATTTAGTCATTGCTaGGCAGTGTATCCTATGGAATACCCCACACCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: GKTINLLRFSHC*AVYPMEYPTPE Trigger: TTCAGGTGTGGGGTATTCCATAGGATACACTGCCAAGCAATGACTAAATCTTAAAAGGTTAATGGTCTTTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CCA 90 bp | ATACAACAGCTCTGTTCAGGTTTGTCTTGGTGTAGATCTCTGATGTTGAGAATTCAGGAAGTTGTGGTCTaGAACCATATGGTCTATTTT | + |
|
Preference number: 4 (lower is better) Translates to: IQQLCSGLSWCRSLMLRIQEVVV*NHMVYF Trigger: AAAATAGACCATATGGTTCCAGACCACAACTTCCTG...AATTCTCAACATCAGAGATCTACACCAAGACAAACCTGAACAGAGCTGTTGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS CCA 90 bp | GCCAAGCAACCACAAACCCGACAGAGATGGGCTCCAGACTTGAGCTaGAGGCACACACATTCCGTACCCAAAGCTTCTGTTTCAGAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: AKQPQTRQRWAPDLS*RHTHSVPKASVSEG Trigger: CCCTTCTGAAACAGAAGCTTTGGGTACGGAATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATCTCTGTCGGGTTTGTGGTTGCTTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054450.7 ENSMUST00000154293.8 |
||
| CDS CCA 90 bp | CTAGAGCATGTCATAGGGGCCAAGCAACCACAAACCCGACAGAGATaGGCTCCAGACTTGAGCTGGAGGCACACACATTCCGTACCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: LEHVIGAKQPQTRQR*APDLSWRHTHSVPK Trigger: TTTGGGTACGGAATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATCTCTGTCGGGTTTGTGGTTGCTTGGCCCCTATGACATGCTCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054450.7 ENSMUST00000154293.8 |
||
| CDS-3UTR CAA 90 bp | GAAAGATGGCTCAGGCCCACTCTACTCAGGTTACTGCTTCCAGGGCCAGTTTCTAGATGGGCTCCAGACTaGAGCTGGAGGCACACACAT | + |
|
Preference number: 5 (lower is better) Translates to: ERWLRPTLLRLLLPGPVSRWAPD*SWRHTH Trigger: ATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATCT...AGAAACTGGCCCTGGAAGCAGTAACCTGAGTAGAGTGGGCCTGAGCCATCTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CAA 90 bp | TTAGAACTTTCTGTAATACATTCTGAGCAGACAGCATTGCTGGTCATTTGGGATGGCCGCCCGCCCACTTaGCTGGGAAACTGCTCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LELSVIHSEQTALLVIWDGRPPT*LGNCSL Trigger: CAGCGAGCAGTTTCCCAGCAAAGTGGGCGGGCGGCC...ATCCCAAATGACCAGCAATGCTGTCTGCTCAGAATGTATTACAGAAAGTTCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS-3UTR CAA 90 bp | ATACAACAGCTCTGTTCAGGTTTGTCTTGGTGTAGATCTCTGATGTTGAGAATTAGAATGCGTTGTTCCTaGGTAGCTGATTACGAAAAA | + |
|
Preference number: 5 (lower is better) Translates to: IQQLCSGLSWCRSLMLRIRMRCS*VADYEK Trigger: TTTTTCGTAATCAGCTACCAAGGAACAACGCATTCT...AATTCTCAACATCAGAGATCTACACCAAGACAAACCTGAACAGAGCTGTTGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154293.8 |
||
| CDS GCA 72 bp | AAGGCGTCGTCCCGGCCCGGCAGCGGTGCGTACACCTaGAGCAGGAAGGCGAGCGGGCGGCCGCAGCGCGCA | + |
|
Preference number: 6 (lower is better) Translates to: KASSRPGSGAYT*SRKASGRPQRA Trigger: TGCGCGCTGCGGCCGCCCGCTCGCCTTCCTGCTGCAGGTGTACGCACCGCTGCCGGGCCGGGACGACGCCTT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054450.7 ENSMUST00000154293.8 |
||
| CDS TCA 72 bp | AGCAACCACAAACCCGACAGAGATGGGCTCCAGACTTaGGCTGGAGGCACACACATTCCGTACCCAAAGCTT | + |
|
Preference number: 6 (lower is better) Translates to: SNHKPDRDGLQT*AGGTHIPYPKL Trigger: AAGCTTTGGGTACGGAATGTGTGTGCCTCCAGCTCAAGTCTGGAGCCCATCTCTGTCGGGTTTGTGGTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054450.7 ENSMUST00000154293.8 |
||