Pregenerated sensors for PDCD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026285Ensembl transcript IDs: ENSMUST00000027507.9
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTGGGAGCCTTGGCTGAACTGTAGCCTGCATGCTCCTCTTGACTaGGGGACGGACCGGTGCTCTCTGTGGAGGGTCTGCAGCATGCTA | + |
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Preference number: 1 (lower is better) Translates to: PWEPWLNCSLHAPLD*GTDRCSLWRVCSML Trigger: TAGCATGCTGCAGACCCTCCACAGAGAGCACCGGTCCGTCCCTCAGTCAAGAGGAGCATGCAGGCTACAGTTCAGCCAAGGCTCCCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR TCA 90 bp | GGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTGGTAAACCTGAAGTaGGCTCTCACTCAACAGTGCATGTGCTGGAATTGGTGCAGGCGC | + |
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Preference number: 1 (lower is better) Translates to: GNREACCSQLVVNLK*ALTQQCMCWNWCRR Trigger: GCGCCTGCACCAATTCCAGCACATGCACTGTTGAGTGAGAGCTCACTTCAGGTTTACCACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CCA 90 bp | CAACTCCAGGACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTaGTTTGCGTCAAGGTTATATCCCCCTTTCCTTCCCTGCTGTCAA | + |
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Preference number: 1 (lower is better) Translates to: QLQDRVNEEILTPQC*FASRLYPPFLPCCQ Trigger: TTGACAGCAGGGAAGGAAAGGGGGATATAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTCCTGGAGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR GCA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAAACCGGGAAGCCTGCTaGTCCCAGCTTGTGGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVNREAC*SQLVVN Trigger: GTTTACCACAAGCTGGGAGCAGCAGGCTTCCCGGTT...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CCA 90 bp | AAAGCAGGCTGTACTCAGATCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCAGACCCTGGGAGCCTTaGCTGAACTGTAGCCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: KAGCTQISPFPGTEPTEARPWEP*LNCSLH Trigger: ATGCAGGCTACAGTTCAGCCAAGGCTCCCAGGGTCT...GGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGATCTGAGTACAGCCTGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR GCA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTATCTCTGTGGAGGGTCTaGAGCATGCTAATGGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVSLWRV*SMLMAE Trigger: TTCAGCCATTAGCATGCTGCAGACCCTCCACAGAGA...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR GCA 90 bp | ACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAAGGCTCTCACTCAACAGTaGATGTGCTGGAATTGGTGC | + |
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Preference number: 2 (lower is better) Translates to: TWACRRTADTLTELLPGKALTQQ*MCWNWC Trigger: GCACCAATTCCAGCACATGCACTGTTGAGTGAGAGC...CTTACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CAA 90 bp | GTCAAGGTTATATCCCCCTTTCCTTCCCTGCTGTCAACATGGACTTaGTCCTTTTGGTTCCTAGGAGGAGTAGGGAGAGTCAAGTGCCCC | + |
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Preference number: 2 (lower is better) Translates to: VKVISPFPSLLSTWT*SFWFLGGVGRVKCP Trigger: GGGGCACTTGACTCTCCCTACTCCTCCTAGGAACCAAAAGGACAAAGTCCATGTTGACAGCAGGGAAGGAAAGGGGGATATAACCTTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CCA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTAGACCGGTGCTCTCTGTaGAGGGTCTGCAGCATGCTA | + |
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Preference number: 2 (lower is better) Translates to: DRVNEEILTPQCWFASRLDRCSL*RVCSML Trigger: TAGCATGCTGCAGACCCTCCACAGAGAGCACCGGTC...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CCA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAAACTTTTCCAGATCTTaGGATTGGTTCAGTCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVNFSRS*DWFSPP Trigger: TGGGGGACTGAACCAATCCCAAGATCTGGAAAAGTT...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CCA 90 bp | TTTAATTATAACGGGCTTAAACCAAAGGAAAGGGACTTAAGCCCTGGTCATTTTTGGACCCCCTTGCTTTaGGGTTGCCTCACAGGGCCA | + |
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Preference number: 2 (lower is better) Translates to: FNYNGLKPKERDLSPGHFWTPLL*GCLTGP Trigger: TGGCCCTGTGAGGCAACCCCAAAGCAAGGGGGTCCA...AAAATGACCAGGGCTTAAGTCCCTTTCCTTTGGTTTAAGCCCGTTATAATTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CCA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTATCCCTGCTGTCAACATaGACTTTGTCCTTTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: DRVNEEILTPQCWFASRLSLLST*TLSFWF Trigger: GAACCAAAAGGACAAAGTCCATGTTGACAGCAGGGA...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR TCA 90 bp | TTTAATTATAACGGGCTTAAACCAAAGGAAAGGGACTTAAGCCCTGGTCATTTTGTGGTAAACCTGAAGTaGGCTCTCACTCAACAGTGC | + |
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Preference number: 2 (lower is better) Translates to: FNYNGLKPKERDLSPGHFVVNLK*ALTQQC Trigger: GCACTGTTGAGTGAGAGCTCACTTCAGGTTTACCAC...AAAATGACCAGGGCTTAAGTCCCTTTCCTTTGGTTTAAGCCCGTTATAATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR-3UTR CAA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAGTGCATGTGCTGGAATaGGTGCAGGCGCTGGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVVHVLE*VQALGC Trigger: ACAGCCCAGCGCCTGCACCAATTCCAGCACATGCAC...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR GCA 72 bp | TCCTTTTGGTTCCTAGGAGGAGTAGGGAGAGTCAAGTaGCCCCCTGGATGTGTGGGTGGCTCTAGCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SFWFLGGVGRVK*PPGCVGGSSSA Trigger: AGCAGAGCTAGAGCCACCCACACATCCAGGGGGGCACTTGACTCTCCCTACTCCTCCTAGGAACCAAAAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR TCA 72 bp | GAAGCCTGCTGCTCCCAGCTTGTGGTAAACCTGAAGTaGGCTCTCACTCAACAGTGCATGTGCTGGAATTGG | + |
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Preference number: 3 (lower is better) Translates to: EACCSQLVVNLK*ALTQQCMCWNW Trigger: CCAATTCCAGCACATGCACTGTTGAGTGAGAGCTCACTTCAGGTTTACCACAAGCTGGGAGCAGCAGGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CCA 72 bp | TTTCCTTCCCTGCTGTCAACATGGACTTTGTCCTTTTaGTTCCTAGGAGGAGTAGGGAGAGTCAAGTGCCCC | + |
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Preference number: 3 (lower is better) Translates to: FPSLLSTWTLSF*FLGGVGRVKCP Trigger: GGGGCACTTGACTCTCCCTACTCCTCCTAGGAACCAAAAGGACAAAGTCCATGTTGACAGCAGGGAAGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR GCA 72 bp | TGGTCATTTTGGGTGCCCACCAGACAGCTAGACTCTTaGTACCCTGACTGTCTGAAGTGCTTGCTCATTTCA | + |
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Preference number: 3 (lower is better) Translates to: WSFWVPTRQLDS*YPDCLKCLLIS Trigger: TGAAATGAGCAAGCACTTCAGACAGTCAGGGTAGCAAGAGTCTAGCTGTCTGGTGGGCACCCAAAATGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CCA 72 bp | AAGGTTATATCCCCCTTTCCTTCCCTGCTGTCAACATaGACTTTGTCCTTTTGGTTCCTAGGAGGAGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: KVISPFPSLLST*TLSFWFLGGVG Trigger: CCCTACTCCTCCTAGGAACCAAAAGGACAAAGTCCATGTTGACAGCAGGGAAGGAAAGGGGGATATAACCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CCA 72 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTaGTTTGCGTCAAGGTTATATCCCCCTTTCCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: DRVNEEILTPQC*FASRLYPPFLP Trigger: GGGAAGGAAAGGGGGATATAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR TCA 90 bp | ACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAAGAGGCTGGGTAGAAGGTaGGGGACCTCCAGGGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: TWACRRTADTLTELLPGKRLGRR*GTSRAH Trigger: ATGGGCCCTGGAGGTCCCTCACCTTCTACCCAGCCT...CTTACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAACCGGCCTTCTGGTTTaGGCGAGGGGCTGGGATATC | + |
|
Preference number: 4 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVTGLLV*ARGWDI Trigger: GATATCCCAGCCCCTCGCCCAAACCAGAAGGCCGGT...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR TCA 90 bp | AGCAGGCTGTACTCAGATCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCATGCAGCACAGCCCAAGTaGATGACCAGGGTACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SRLYSDLSISRHRTHRGHAAQPK*MTRVPA Trigger: GGCAGGTACCCTGGTCATTCACTTGGGCTGTGCTGC...ATGGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGATCTGAGTACAGCCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | GTGCCCACCAGACAGCTAGACTCTTGCTACCCTGACTGTCTGAAGTGCTTGCTCCACTGTGAGCCAGGCTaGGTAGAAGGTGAGGGACCT | + |
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Preference number: 4 (lower is better) Translates to: VPTRQLDSCYPDCLKCLLHCEPG*VEGEGP Trigger: AGGTCCCTCACCTTCTACCCAGCCTGGCTCACAGTG...GAGCAAGCACTTCAGACAGTCAGGGTAGCAAGAGTCTAGCTGTCTGGTGGGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CAA 72 bp | GGGCCCATAGTATACCTGGACCCCCTTGCTTTGGGGTaGCCTCACAGGGCCATTCAAAGCAGGCTGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: GPIVYLDPLALG*PHRAIQSRLYS Trigger: TGAGTACAGCCTGCTTTGAATGGCCCTGTGAGGCAACCCCAAAGCAAGGGGGTCCAGGTATACTATGGGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | AAAGCAGGCTGTACTCAGATCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCCCCCACAGAGGTAGATaGCACTGTCATTGCGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: KAGCTQISPFPGTEPTEAPHRGR*HCHCAV Trigger: CACGGCGCAATGACAGTGGCATCTACCTCTGTGGGG...GGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGATCTGAGTACAGCCTGCTTT 56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTAGGAGGCCGAGGACCCTaGAGGCCATCAGCTGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: DRVNEEILTPQCWFASRLGGRGP*RPSAEP Trigger: GGGCTCAGCTGATGGCCTGCAGGGTCCTCGGCCTCC...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR TCA 90 bp | CTCCAGGACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCACACAGCCCAAGTGAATaGCCAGGGTACCTGCCGGAC | + |
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Preference number: 4 (lower is better) Translates to: LQDRVNEEILTPQCWFASHSPSE*PGYLPD Trigger: GTCCGGCAGGTACCCTGGTCATTCACTTGGGCTGTG...TGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTCCTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAAGAAGCCACCCTGATTaGCAGCTCAACTGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVRSHPD*QLNCST Trigger: TGTGCTGCAGTTGAGCTGGCAATCAGGGTGGCTTCT...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | AGCTCTGCACCTTGTGACAATAGGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTTTTCAGTCTGGTTGCTaGGACTCAGGCGGTTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SSAPCDNRKPGSLLLPACFQSGC*DSGGSS Trigger: ACTGGAACCGCCTGAGTCCCAGCAACCAGACTGAAA...ACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCCTATTGTCACAAGGTGCAGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | AGCAGGCTGTACTCAGATCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCATGTTTTTCAGTCTGGTTaGTGGGACTCAGGCGGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SRLYSDLSISRHRTHRGHVFQSG*WDSGGS Trigger: GGAACCGCCTGAGTCCCAGCAACCAGACTGAAAAAC...ATGGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGATCTGAGTACAGCCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | CTCCAGGACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCACCTCGATTTTTGCCTTaGGGTGCAGGGAGATGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LQDRVNEEILTPQCWFASPRFLP*GAGRWP Trigger: GGGCCATCTCCCTGCACCCCAAGGCAAAAATCGAGG...TGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTCCTGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | AGCTCTGCACCTTGTGACAATAGGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTTTCATGTGGAAGTCATaGCTGTTGGGCAGCTGTATG | + |
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Preference number: 4 (lower is better) Translates to: SSAPCDNRKPGSLLLPACFMWKS*LLGSCM Trigger: CATACAGCTGCCCAACAGGCATGACTTCCACATGAA...ACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCCTATTGTCACAAGGTGCAGAGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR GCA 90 bp | CTCCAGGACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAGTGGCATATTCTGTGTaGACACAGGCGGTAGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LQDRVNEEILTPQCWFASVAYSV*TQAVGS Trigger: GCTCCCTACCGCCTGTGTGCACACAGAATATGCCAC...TGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTCCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTATCCATCCTCATGTCTTaGAGGCCGAGGACCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: DRVNEEILTPQCWFASRLSILMS*RPRTLQ Trigger: CTGCAGGGTCCTCGGCCTCCAAGACATGAGGATGGA...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CAA 72 bp | TCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCATaGGCTATAGTGTCTCAAGTCCCTAGAAGTGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SLHFQAQNPQRP*AIVSQVPRSAQ Trigger: TTGGGCACTTCTAGGGACTTGAGACACTATAGCCAATGGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| 3UTR CAA 72 bp | CTTTCCTTCCCTGCTGTCAACATGGACTTTGTCCTTTaGGTTCCTAGGAGGAGTAGGGAGAGTCAAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSFPAVNMDFVL*VPRRSRESQVP Trigger: GGGCACTTGACTCTCCCTACTCCTCCTAGGAACCAAAAGGACAAAGTCCATGTTGACAGCAGGGAAGGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CCA 90 bp | CTCCAGGACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCATGCTTCCAGCTCCTCTaGCCTCTGACATACTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: LQDRVNEEILTPQCWFASCFQLL*PLTYLL Trigger: CAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCA...TGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTCCTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR TCA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTAGCTGGGATATCTTGTTaGGGTCTCCAGGATTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: DRVNEEILTPQCWFASRLAGISC*GLQDSL Trigger: GAGAGAATCCTGGAGACCTCAACAAGATATCCCAGC...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR TCA 90 bp | TTTAATTATAACGGGCTTAAACCAAAGGAAAGGGACTTAAGCCCTGGTCATTTTTGGACAAGCTGCAGGTaGAGGTGGCATTTGCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: FNYNGLKPKERDLSPGHFWTSCR*RWHLLP Trigger: AGGGAGCAAATGCCACCTTCACCTGCAGCTTGTCCA...AAAATGACCAGGGCTTAAGTCCCTTTCCTTTGGTTTAAGCCCGTTATAATTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 90 bp | GGCCAAGAACAATGTCCATCCTCATGTCTTGGAGGCCGAGGACCCTaGAGGCCATCAGCTGAGCCCCTACGTCCCATGGCCGAGGCACCC | + |
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Preference number: 5 (lower is better) Translates to: GQEQCPSSCLGGRGP*RPSAEPLRPMAEAP Trigger: GGGTGCCTCGGCCATGGGACGTAGGGGCTCAGCTGATGGCCTGCAGGGTCCTCGGCCTCCAAGACATGAGGATGGACATTGTTCTTGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 90 bp | CGACCAGTTGGACAAGCTGCAGGTGAAGGTGGCATTTGCTCCCTCTaGCACTGTGAGCCAGGCTGGGTAGAAGGTGAGGGACCTCCAGGG | + |
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Preference number: 5 (lower is better) Translates to: RPVGQAAGEGGICSL*HCEPGWVEGEGPPG Trigger: CCCTGGAGGTCCCTCACCTTCTACCCAGCCTGGCTCACAGTGTCAGAGGGAGCAAATGCCACCTTCACCTGCAGCTTGTCCAACTGGTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | GTACCTGGGCATGCAGAAGGACAGCAGATACGCTCACGGAGCTTTTGCCTGGTAGACCTCCAGGGCCCATaGGGGACCTCTAGAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: VPGHAEGQQIRSRSFCLVDLQGP*GTSRSH Trigger: GTGGCTTCTAGAGGTCCCCAATGGGCCCTGGAGGTC...TACCAGGCAAAAGCTCCGTGAGCGTATCTGCTGTCCTTCTGCATGCCCAGGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 90 bp | GAGGCACCCAGCCCTTCAGTGAAGACAATGGTGGCATATTCTGTGTaGACACAGGCGGTAGGGAGCTCTGGTGTCTTCTCTCGTCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: EAPSPSVKTMVAYSV*TQAVGSSGVFSRPW Trigger: CCAGGGACGAGAGAAGACACCAGAGCTCCCTACCGCCTGTGTGCACACAGAATATGCCACCATTGTCTTCACTGAAGGGCTGGGTGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 90 bp | CTGTTACCACGAGCTCTGCTCCAGGGCTCTCCTCGATTTTTGCCTTaGGGTGCAGGGAGATGGCCCCACAGAGGTAGATGCCACTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: LLPRALLQGSPRFLP*GAGRWPHRGRCHCH Trigger: ATGACAGTGGCATCTACCTCTGTGGGGCCATCTCCCTGCACCCCAAGGCAAAAATCGAGGAGAGCCCTGGAGCAGAGCTCGTGGTAACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 90 bp | TGGGGTGCAGGGAGATGGCCCCACAGAGGTAGATGCCACTGTCATTaGGCCGTGTGTCAAGGATGTTCATGTGGAAGTCATGCCTGTTGG | + |
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Preference number: 5 (lower is better) Translates to: WGAGRWPHRGRCHCH*AVCQGCSCGSHACW Trigger: CCAACAGGCATGACTTCCACATGAACATCCTTGACACACGGCGCAATGACAGTGGCATCTACCTCTGTGGGGCCATCTCCCTGCACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 90 bp | GACAATGGTGGCATATTCTGTGTGCACACAGGCGGTAGGGAGCTCTaGTGTCTTCTCTCGTCCCTGGAAGTCCAGCTCCTCATAGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: DNGGIFCVHTGGREL*CLLSSLEVQLLIGH Trigger: GTGGCCTATGAGGAGCTGGACTTCCAGGGACGAGAGAAGACACCAGAGCTCCCTACCGCCTGTGTGCACACAGAATATGCCACCATTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | AGCTCTGCACCTTGTGACAATAGGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTGGCTCTCCTCGATTTTaGCCTTGGGGTGCAGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: SSAPCDNRKPGSLLLPACGSPRF*PWGAGR Trigger: TCTCCCTGCACCCCAAGGCAAAAATCGAGGAGAGCC...ACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCCTATTGTCACAAGGTGCAGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | AGCTCTGCACCTTGTGACAATAGGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTTTCAGAGTGTCGTCCTaGCTTCCAGCTCCTCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSAPCDNRKPGSLLLPACFRVSS*LPAPLA Trigger: GGCCAGAGGAGCTGGAAGCAAGGACGACACTCTGAA...ACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCCTATTGTCACAAGGTGCAGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 90 bp | TTGAAACCGGCCTTCTGGTTTGGGCGAGGGGCTGGGATATCTTGTTaGGGTCTCCAGGATTCTCTCTGTTACCACGAGCTCTGCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LKPAFWFGRGAGISC*GLQDSLCYHELCSR Trigger: CCTGGAGCAGAGCTCGTGGTAACAGAGAGAATCCTGGAGACCTCAACAAGATATCCCAGCCCCTCGCCCAAACCAGAAGGCCGGTTTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 90 bp | CCACTGTCATTGCGCCGTGTGTCAAGGATGTTCATGTGGAAGTCATaGCTGTTGGGCAGCTGTATGATCTGGAAGCGGGCATCCTGGACG | + |
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Preference number: 5 (lower is better) Translates to: PLSLRRVSRMFMWKS*LLGSCMIWKRASWT Trigger: CGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCTTGACACACGGCGCAATGACAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | GTGCCCACCAGACAGCTAGACTCTTGCTACCCTGACTGTCTGAAGTGCTTGCTCAGATCCTCCGACCAGTaGGACAAGCTGCAGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VPTRQLDSCYPDCLKCLLRSSDQ*DKLQVK Trigger: CTTCACCTGCAGCTTGTCCAACTGGTCGGAGGATCT...GAGCAAGCACTTCAGACAGTCAGGGTAGCAAGAGTCTAGCTGTCTGGTGGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | AGCAGGCTGTACTCAGATCTCTCCATTTCCAGGCACAGAACCCACAGAGGCCATTCCTCGATTTTTGCCTaGGGGTGCAGGGAGATGGCC | + |
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Preference number: 5 (lower is better) Translates to: SRLYSDLSISRHRTHRGHSSIFA*GCREMA Trigger: GGCCATCTCCCTGCACCCCAAGGCAAAAATCGAGGA...ATGGCCTCTGTGGGTTCTGTGCCTGGAAATGGAGAGATCTGAGTACAGCCTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | AGCTCTGCACCTTGTGACAATAGGAAACCGGGAAGCCTGCTGCTCCCAGCTTGTTGGAAGTCATGCCTGTaGGGCAGCTGTATGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSAPCDNRKPGSLLLPACWKSCL*GSCMIW Trigger: CCAGATCATACAGCTGCCCAACAGGCATGACTTCCA...ACAAGCTGGGAGCAGCAGGCTTCCCGGTTTCCTATTGTCACAAGGTGCAGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | GTGCCCACCAGACAGCTAGACTCTTGCTACCCTGACTGTCTGAAGTGCTTGCTCAGGGGCTGGGATATCTaGTTGAGGTCTCCAGGATTC | + |
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Preference number: 5 (lower is better) Translates to: VPTRQLDSCYPDCLKCLLRGWDI*LRSPGF Trigger: GAATCCTGGAGACCTCAACAAGATATCCCAGCCCCT...GAGCAAGCACTTCAGACAGTCAGGGTAGCAAGAGTCTAGCTGTCTGGTGGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 90 bp | TGTCAAGGATGTTCATGTGGAAGTCATGCCTGTTGGGCAGCTGTATaGTCTGGAAGCGGGCATCCTGGACGGGTTGGCTCAAACCATTAC | + |
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Preference number: 5 (lower is better) Translates to: CQGCSCGSHACWAAV*SGSGHPGRVGSNHY Trigger: GTAATGGTTTGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCTTGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 90 bp | AGGATGTTCATGTGGAAGTCATGCCTGTTGGGCAGCTGTATGATCTaGAAGCGGGCATCCTGGACGGGTTGGCTCAAACCATTACAGAAG | + |
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Preference number: 5 (lower is better) Translates to: RMFMWKSCLLGSCMI*KRASWTGWLKPLQK Trigger: CTTCTGTAATGGTTTGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | GACAGAGTGAATGAGGAGATTCTAACACCCCAGTGTTGGTTTGCGTCAAGGTTACCTCTGACATACTTGTaGAGCAGAAGACAGCTAGGG | + |
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Preference number: 5 (lower is better) Translates to: DRVNEEILTPQCWFASRLPLTYL*SRRQLG Trigger: CCCTAGCTGTCTTCTGCTCAACAAGTATGTCAGAGG...TAACCTTGACGCAAACCAACACTGGGGTGTTAGAATCTCCTCATTCACTCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS-3UTR CAA 90 bp | TTTAATTATAACGGGCTTAAACCAAAGGAAAGGGACTTAAGCCCTGGTCATTTTACCAATGACCATGCCTaGAAACCGGCCTTCTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: FNYNGLKPKERDLSPGHFTNDHA*KPAFWF Trigger: AAACCAGAAGGCCGGTTTCAAGGCATGGTCATTGGT...AAAATGACCAGGGCTTAAGTCCCTTTCCTTTGGTTTAAGCCCGTTATAATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 72 bp | ATGTCTTGGAGGCCGAGGACCCTGCAGGCCATCAGCTaGGCCCCTACGTCCCATGGCCGAGGCACCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: MSWRPRTLQAIS*APTSHGRGTQP Trigger: GGGCTGGGTGCCTCGGCCATGGGACGTAGGGGCTCAGCTGATGGCCTGCAGGGTCCTCGGCCTCCAAGACAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | CAATGTCCATCCTCATGTCTTGGAGGCCGAGGACCCTaGAGGCCATCAGCTGAGCCCCTACGTCCCATGGCC | + |
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Preference number: 6 (lower is better) Translates to: QCPSSCLGGRGP*RPSAEPLRPMA Trigger: GGCCATGGGACGTAGGGGCTCAGCTGATGGCCTGCAGGGTCCTCGGCCTCCAAGACATGAGGATGGACATTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 72 bp | GGACAAGCTGCAGGTGAAGGTGGCATTTGCTCCCTCTaGCACTGTGAGCCAGGCTGGGTAGAAGGTGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: GQAAGEGGICSL*HCEPGWVEGEG Trigger: TCCCTCACCTTCTACCCAGCCTGGCTCACAGTGTCAGAGGGAGCAAATGCCACCTTCACCTGCAGCTTGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 72 bp | CCCTACGTCCCATGGCCGAGGCACCCAGCCCTTCAGTaGAGACAATGGTGGCATATTCTGTGTGCACACAGG | + |
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Preference number: 6 (lower is better) Translates to: PYVPWPRHPALQ*RQWWHILCAHR Trigger: CCTGTGTGCACACAGAATATGCCACCATTGTCTTCACTGAAGGGCTGGGTGCCTCGGCCATGGGACGTAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | CAGGGCCCATTGGGGACCTCTAGAAGCCACCCTGATTaGCAGCTCAACTGCAGCACAGCCCAAGTGAATGAC | + |
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Preference number: 6 (lower is better) Translates to: QGPLGTSRSHPD*QLNCSTAQVND Trigger: GTCATTCACTTGGGCTGTGCTGCAGTTGAGCTGGCAATCAGGGTGGCTTCTAGAGGTCCCCAATGGGCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | CCTTGGGGTGCAGGGAGATGGCCCCACAGAGGTAGATaGCACTGTCATTGCGCCGTGTGTCAAGGATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: PWGAGRWPHRGR*HCHCAVCQGCS Trigger: TGAACATCCTTGACACACGGCGCAATGACAGTGGCATCTACCTCTGTGGGGCCATCTCCCTGCACCCCAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 72 bp | CTGTTGGGCAGCTGTATGATCTGGAAGCGGGCATCCTaGACGGGTTGGCTCAAACCATTACAGAAGGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: LLGSCMIWKRAS*TGWLKPLQKAA Trigger: GGCCGCCTTCTGTAATGGTTTGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | CCTTGCTTCCAGCTCCTCTGGCCTCTGACATACTTGTaGAGCAGAAGACAGCTAGGGCCCAGGCCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: PCFQLLWPLTYL*SRRQLGPRPAA Trigger: TGCTGCTGGCCTGGGCCCTAGCTGTCTTCTGCTCAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | CGTCCTTGCTTCCAGCTCCTCTGGCCTCTGACATACTaGTTGAGCAGAAGACAGCTAGGGCCCAGGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RPCFQLLWPLTY*LSRRQLGPRPA Trigger: TGCTGGCCTGGGCCCTAGCTGTCTTCTGCTCAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 90 bp | GAGTGTCGTCCTTGCTTCCAGCTCCTCTGGCCTCTGACATACTTGTaGAGCAGAAGACAGCTAGGGCCCAGGCCAGCAGCAGCAATACAG | + |
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Preference number: 6 (lower is better) Translates to: ECRPCFQLLWPLTYL*SRRQLGPRPAAAIQ Trigger: CTGTATTGCTGCTGCTGGCCTGGGCCCTAGCTGTCTTCTGCTCAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGGACGACACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 90 bp | CTGGGACTCAGGCGGTTCCAGTTCAGCATAAGATCCTCCGACCAGTaGGACAAGCTGCAGGTGAAGGTGGCATTTGCTCCCTCTGACACT | + |
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Preference number: 6 (lower is better) Translates to: LGLRRFQFSIRSSDQ*DKLQVKVAFAPSDT Trigger: AGTGTCAGAGGGAGCAAATGCCACCTTCACCTGCAGCTTGTCCAACTGGTCGGAGGATCTTATGCTGAACTGGAACCGCCTGAGTCCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 90 bp | TCATTGCGCCGTGTGTCAAGGATGTTCATGTGGAAGTCATGCCTGTaGGGCAGCTGTATGATCTGGAAGCGGGCATCCTGGACGGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SLRRVSRMFMWKSCL*GSCMIWKRASWTGW Trigger: CCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCTTGACACACGGCGCAATGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 90 bp | CTTGAAACCGGCCTTCTGGTTTGGGCGAGGGGCTGGGATATCTTGTaGAGGTCTCCAGGATTCTCTCTGTTACCACGAGCTCTGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: LETGLLVWARGWDIL*RSPGFSLLPRALLQ Trigger: CTGGAGCAGAGCTCGTGGTAACAGAGAGAATCCTGGAGACCTCAACAAGATATCCCAGCCCCTCGCCCAAACCAGAAGGCCGGTTTCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 90 bp | TCAGAGTGTCGTCCTTGCTTCCAGCTCCTCTGGCCTCTGACATACTaGTTGAGCAGAAGACAGCTAGGGCCCAGGCCAGCAGCAGCAATA | + |
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Preference number: 6 (lower is better) Translates to: SECRPCFQLLWPLTY*LSRRQLGPRPAAAI Trigger: TATTGCTGCTGCTGGCCTGGGCCCTAGCTGTCTTCTGCTCAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGGACGACACTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 72 bp | TGTTCATGTGGAAGTCATGCCTGTTGGGCAGCTGTATaGTCTGGAAGCGGGCATCCTGGACGGGTTGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: CSCGSHACWAAV*SGSGHPGRVGS Trigger: TGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS TCA 72 bp | GCCTTCTGGTTTGGGCGAGGGGCTGGGATATCTTGTTaGGGTCTCCAGGATTCTCTCTGTTACCACGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: AFWFGRGAGISC*GLQDSLCYHEL Trigger: GAGCTCGTGGTAACAGAGAGAATCCTGGAGACCTCAACAAGATATCCCAGCCCCTCGCCCAAACCAGAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 72 bp | ATGTGGAAGTCATGCCTGTTGGGCAGCTGTATGATCTaGAAGCGGGCATCCTGGACGGGTTGGCTCAAACCA | + |
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Preference number: 6 (lower is better) Translates to: MWKSCLLGSCMI*KRASWTGWLKP Trigger: TGGTTTGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | AGGCGGTTCCAGTTCAGCATAAGATCCTCCGACCAGTaGGACAAGCTGCAGGTGAAGGTGGCATTTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: RRFQFSIRSSDQ*DKLQVKVAFAP Trigger: GGGAGCAAATGCCACCTTCACCTGCAGCTTGTCCAACTGGTCGGAGGATCTTATGCTGAACTGGAACCGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | GGCCTTCTGGTTTGGGCGAGGGGCTGGGATATCTTGTaGAGGTCTCCAGGATTCTCTCTGTTACCACGAGCT | + |
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Preference number: 6 (lower is better) Translates to: GLLVWARGWDIL*RSPGFSLLPRA Trigger: AGCTCGTGGTAACAGAGAGAATCCTGGAGACCTCAACAAGATATCCCAGCCCCTCGCCCAAACCAGAAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | GGTGCTGCTGAAGGCTCCTCCTTCAGAGTGTCGTCCTaGCTTCCAGCTCCTCTGGCCTCTGACATACTTGTT | + |
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Preference number: 6 (lower is better) Translates to: GAAEGSSFRVSS*LPAPLASDILV Trigger: AACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGGACGACACTCTGAAGGAGGAGCCTTCAGCAGCACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | TTGCGCCGTGTGTCAAGGATGTTCATGTGGAAGTCATaGCTGTTGGGCAGCTGTATGATCTGGAAGCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: LRRVSRMFMWKS*LLGSCMIWKRA Trigger: TGCCCGCTTCCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCTTGACACACGGCGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | GGGAGATGGCCCCACAGAGGTAGATGCCACTGTCATTaGGCCGTGTGTCAAGGATGTTCATGTGGAAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: GRWPHRGRCHCH*AVCQGCSCGSH Trigger: ATGACTTCCACATGAACATCCTTGACACACGGCGCAATGACAGTGGCATCTACCTCTGTGGGGCCATCTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CAA 72 bp | CAGCTGTATGATCTGGAAGCGGGCATCCTGGACGGGTaGGCTCAAACCATTACAGAAGGCGGCCTGTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: QLYDLEAGILDG*AQTITEGGLFF Trigger: GAAAAACAGGCCGCCTTCTGTAATGGTTTGAGCCAACCCGTCCAGGATGCCCGCTTCCAGATCATACAGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS GCA 72 bp | AGCCCTTCAGTGAAGACAATGGTGGCATATTCTGTGTaGACACAGGCGGTAGGGAGCTCTGGTGTCTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: SPSVKTMVAYSV*TQAVGSSGVFS Trigger: AGAGAAGACACCAGAGCTCCCTACCGCCTGTGTGCACACAGAATATGCCACCATTGTCTTCACTGAAGGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 72 bp | CCACTGTCATTGCGCCGTGTGTCAAGGATGTTCATGTaGAAGTCATGCCTGTTGGGCAGCTGTATGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: PLSLRRVSRMFM*KSCLLGSCMIW Trigger: CCAGATCATACAGCTGCCCAACAGGCATGACTTCCACATGAACATCCTTGACACACGGCGCAATGACAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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| CDS CCA 72 bp | CCTCCTTCAGAGTGTCGTCCTTGCTTCCAGCTCCTCTaGCCTCTGACATACTTGTTGAGCAGAAGACAGCTA | + |
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Preference number: 6 (lower is better) Translates to: PPSECRPCFQLL*PLTYLLSRRQL Trigger: TAGCTGTCTTCTGCTCAACAAGTATGTCAGAGGCCAGAGGAGCTGGAAGCAAGGACGACACTCTGAAGGAGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027507.9 |
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