Pregenerated sensors for PDC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006007Ensembl transcript IDs: ENSMUST00000165062.8, ENSMUST00000185698.2, ENSMUST00000186572.7, ENSMUST00000191228.7
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACAATTGTGGTGACCTTCTGCTCCTTCTCGATGGTTTCCAGGAATTaGTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCA | + |
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Preference number: 1 (lower is better) Translates to: TIVVTFCSFSMVSRN*SPVSSSYTNPYLGP Trigger: TGGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCACCACAATTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 90 bp | TCCAGCTCATACACAAACCCATACCTAGGCCCAAAACTCAACTTCTaGTGCATATCCTGCATGCACTGCCTCCGGTATTTGCGAAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: SSSYTNPYLGPKLNF*CISCMHCLRYLRRQ Trigger: TTGCCTTCGCAAATACCGGAGGCAGTGCATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTATGAGCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 90 bp | GCCATCATAGTCCTGCTAGTTCAAGCAACCAAGCCTCATGAATATTaGTTTGGAGATACATTCGAGAATCCCTGTCAGAAGTTGTTCTGT | + |
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Preference number: 1 (lower is better) Translates to: AIIVLLVQATKPHEY*FGDTFENPCQKLFC Trigger: ACAGAACAACTTCTGACAGGGATTCTCGAATGTATCTCCAAATCAATATTCATGAGGCTTGGTTGCTTGAACTAGCAGGACTATGATGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 90 bp | ATCAGTGTTCACTGTGTAAAGGATAGACATGAGATACTGACATGGTaGAGGCTTATTCAATGTCCTCGTCTTCCATGTTGGTCTGCTCTA | + |
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Preference number: 1 (lower is better) Translates to: ISVHCVKDRHEILTW*RLIQCPRLPCWSAL Trigger: TAGAGCAGACCAACATGGAAGACGAGGACATTGAATAAGCCTTCACCATGTCAGTATCTCATGTCTATCCTTTACACAGTGAACACTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR GCA 90 bp | GACATGGTGAAGGCTTATTCAATGTCCTCGTCTTCCATGTTGGTCTaGTCTAGGTCATGTATCTCTCTTTCTGGTAGTAATCCATATTCA | + |
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Preference number: 1 (lower is better) Translates to: DMVKAYSMSSSSMLV*SRSCISLSGSNPYS Trigger: TGAATATGGATTACTACCAGAAAGAGAGATACATGACCTAGAGCAGACCAACATGGAAGACGAGGACATTGAATAAGCCTTCACCATGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CAA 90 bp | CACAATTGTGGTGACCTTCTGCTCCTTCTCGATGGTTTCCAGGAATaGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: HNCGDLLLLLDGFQE*LPCFQLIHKPIPRP Trigger: GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCACCACAATTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCAAAGGCCCAGAAACTTaGAAGCTGGCATTTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: FQELLPCFQLIHKPIPRPKGPET*KLAFGD Trigger: GTCCCCAAATGCCAGCTTCCAAGTTTCTGGGCCTTT...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAACGTAGGGAGTACGTCTGTGGAAAAGCGGTCCCCCGCTCCGGTATTAGAAACAGAACTTGACCATTaGGTACTCTACTGCAAGGCA | + |
|
Preference number: 2 (lower is better) Translates to: SNVGSTSVEKRSPAPVLETELDH*VLYCKA Trigger: TGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGT...TTCTAATACCGGAGCGGGGGACCGCTTTTCCACAGACGTACTCCCTACGTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAACGTAGGGAGTACGTCTGTGGAAAAGCGGTCCCCCGCTCCGGTATTAGAAGTGATCTCCCACACATaGAAATCTCTTAACTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: SNVGSTSVEKRSPAPVLEVISHT*KSLNCF Trigger: GAAGCAGTTAAGAGATTTTCATGTGTGGGAGATCAC...TTCTAATACCGGAGCGGGGGACCGCTTTTCCACAGACGTACTCCCTACGTTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | GCTTATGAGTTCCCCACCTTTGTACACCAGCAACGTAGGGAGTACGTCTGTGGAGGCTCAAAGGCCACTTaGAGAACCTTTTCTCTACAC | + |
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Preference number: 2 (lower is better) Translates to: AYEFPTFVHQQRREYVCGGSKAT*RTFSLH Trigger: GTGTAGAGAAAAGGTTCTGCAAGTGGCCTTTGAGCC...TCCACAGACGTACTCCCTACGTTGCTGGTGTACAAAGGTGGGGAACTCATAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCTGACACCATCCTCGTAAATGTTAACCACAATTGTGGTGACCTTCTGCTCGATGCATATCCTGCATaGACTGCCTCCGGTATTTGC | + |
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Preference number: 2 (lower is better) Translates to: APDTILVNVNHNCGDLLLDAYPA*TASGIC Trigger: GCAAATACCGGAGGCAGTGCATGCAGGATATGCATC...GAGCAGAAGGTCACCACAATTGTGGTTAACATTTACGAGGATGGTGTCAGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | TTACAGAACTTGACCATTGGGTACTCTACTGCAAGGCACGCTAAGCTGCTGTTGATCACTATCATGGTCTaGAGCCATCTGCCAAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: LQNLTIGYSTARHAKLLLITIMV*SHLPRH Trigger: GTGCCTTGGCAGATGGCTTCAGACCATGATAGTGAT...CAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTATGAGTTCCCCACCTTTGTACACCAGCAACGTAGGGAGTACGTCTGTGGAATGCCAAGGGAAAAATaGGGAGCAAAATCTAACACG | + |
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Preference number: 2 (lower is better) Translates to: AYEFPTFVHQQRREYVCGMPREK*GAKSNT Trigger: CGTGTTAGATTTTGCTCCTCATTTTTCCCTTGGCAT...TCCACAGACGTACTCCCTACGTTGCTGGTGTACAAAGGTGGGGAACTCATAAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAACGTAGGGAGTACGTCTGTGGAAAAGCGGTCCCCCGCTCCGGTATTAGAAAAGCCTCATGAATATTaGTTTGGAGATACATTCGAG | + |
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Preference number: 2 (lower is better) Translates to: SNVGSTSVEKRSPAPVLEKPHEY*FGDTFE Trigger: CTCGAATGTATCTCCAAATCAATATTCATGAGGCTT...TTCTAATACCGGAGCGGGGGACCGCTTTTCCACAGACGTACTCCCTACGTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCTGACACCATCCTCGTAAATGTTAACCACAATTGTGGTGACCTTCTGCTCCTCTTCACACTTCTCTaGACACAGATTCACCTGTCT | + |
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Preference number: 2 (lower is better) Translates to: APDTILVNVNHNCGDLLLLFTLL*TQIHLS Trigger: AGACAGGTGAATCTGTGTGCAGAGAAGTGTGAAGAG...GAGCAGAAGGTCACCACAATTGTGGTTAACATTTACGAGGATGGTGTCAGGGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CCA 90 bp | GCACTACCCAGATCTGCTGACTCAGAACCTATAAGGGTGATGTTGAATTGTCTGCAGAAACTTGGAAGCTaGCATTTGGGGACCCTAAGG | + |
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Preference number: 2 (lower is better) Translates to: ALPRSADSEPIRVMLNCLQKLGS*HLGTLR Trigger: CCTTAGGGTCCCCAAATGCCAGCTTCCAAGTTTCTG...CAGACAATTCAACATCACCCTTATAGGTTCTGAGTCAGCAGATCTGGGTAGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTATGAGTTCCCCACCTTTGTACACCAGCAACGTAGGGAGTACGTCTGTGGAATACAGGCACATTTCTaGAGTTCAACCAGCACAAAA | + |
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Preference number: 2 (lower is better) Translates to: AYEFPTFVHQQRREYVCGIQAHF*SSTSTK Trigger: TTTTGTGCTGGTTGAACTTCAGAAATGTGCCTGTAT...TCCACAGACGTACTCCCTACGTTGCTGGTGTACAAAGGTGGGGAACTCATAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCAGCAACCAAGCCTCATaGATATTGATTTGGAGATAC | + |
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Preference number: 2 (lower is better) Translates to: FQELLPCFQLIHKPIPRPSNQAS*ILIWRY Trigger: GTATCTCCAAATCAATATTCATGAGGCTTGGTTGCT...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | AATGTTAACCACAATTGTGGTGACCTTCTGCTCCTTCTCGATGGTTTCCAGGAAATATCCTGCATGCACTaGCTCCGGTATTTGCGAAGG | + |
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Preference number: 2 (lower is better) Translates to: NVNHNCGDLLLLLDGFQEISCMH*LRYLRR Trigger: CCTTCGCAAATACCGGAGGCAGTGCATGCAGGATAT...TTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCACCACAATTGTGGTTAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCTCAAATAATCTCCATTaGCATTTTAGAGGCCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: FQELLPCFQLIHKPIPRPSNNLH*HFRGPL Trigger: AAGAGGGCCTCTAAAATGTCAATGGAGATTATTTGA...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | GGGACCCTAAGGATGGTAGTCACTGCATCTGCTGACTGTTTTATAATACTTGTTTGGTCTGAAGCCATCTaGCAAGGCACATTTCTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: GTLRMVVTASADCFIILVWSEAI*QGTFLL Trigger: GAGCAGAAATGTGCCTTGGCAGATGGCTTCAGACCA...AACAAGTATTATAAAACAGTCAGCAGATGCAGTGACTACCATCCTTAGGGTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR GCA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCGTTCATATTCTTGAATaGTCATCTGAGAACGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: FQELLPCFQLIHKPIPRPVHILE*SSENAR Trigger: TCTTGCGTTCTCAGATGAGCATTCAAGAATATGAAC...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCCTGACACCATCCTCGTAAATGTTAACCACAATTGTGGTGACCTTCTGCTCTGTTTTGGTTTTCATTaGAATAAGTACCGTTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: APDTILVNVNHNCGDLLLCFGFH*NKYRWS Trigger: GCTCCAACGGTACTTATTTCAATGAAAACCAAAACA...GAGCAGAAGGTCACCACAATTGTGGTTAACATTTACGAGGATGGTGTCAGGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGTGCCAATATGTGCCACCATACCTAGGTCTCTTTCCTATTCTAATAGTTTCTGTTCTGTTTATACATaGAGGCATAGATACTTAGGC | + |
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Preference number: 2 (lower is better) Translates to: PVPICATIPRSLSYSNSFCSVYT*RHRYLG Trigger: GCCTAAGTATCTATGCCTCCATGTATAAACAGAACA...GAAACTATTAGAATAGGAAAGAGACCTAGGTATGGTGGCACATATTGGCACTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAACGTAGGGAGTACGTCTGTGGAAAAGCGGTCCCCCGCTCCGGTATTAGAAGAAAGGCCCAGAAACTaGGAAGCTGGCATTTGGGGA | + |
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Preference number: 3 (lower is better) Translates to: SNVGSTSVEKRSPAPVLEERPRN*EAGIWG Trigger: TCCCCAAATGCCAGCTTCCAAGTTTCTGGGCCTTTC...TTCTAATACCGGAGCGGGGGACCGCTTTTCCACAGACGTACTCCCTACGTTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR GCA 72 bp | CTTGCAATGCTGGCTTTCCTAGTGTTGAGCTTCTTCTaGTTATGTCCTCCCGGATCTTCCCAGGAGATCCTA | + |
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Preference number: 3 (lower is better) Translates to: LAMLAFLVLSFF*LCPPGSSQEIL Trigger: TAGGATCTCCTGGGAAGATCCGGGAGGACATAAGCAGAAGAAGCTCAACACTAGGAAAGCCAGCATTGCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR GCA 72 bp | GTGACCTTCTGCTCCTTCTCGATGGTTTCCAGGAATTaGTCCCCTGTTTCCAGCTCATACACAAACCCATAC | + |
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Preference number: 3 (lower is better) Translates to: VTFCSFSMVSRN*SPVSSSYTNPY Trigger: GTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCCTGGCTTTCCTAGTGTaGAGCTTCTTCTGCTTATGT | + |
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Preference number: 3 (lower is better) Translates to: FQELLPCFQLIHKPIPRPLAFLV*SFFCLC Trigger: ACATAAGCAGAAGAAGCTCAACACTAGGAAAGCCAG...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR GCA 72 bp | CTAGAACTCAAGGTCCTTTTACCACAACCTCCCCAGTaGCAATATGTGCCACCATACCTAGGTCTCTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: LELKVLLPQPPQ*QYVPPYLGLFP Trigger: AGGAAAGAGACCTAGGTATGGTGGCACATATTGGCACTGGGGAGGTTGTGGTAAAAGGACCTTGAGTTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CCA 72 bp | ACTGAAAAGTGTAGAAAGGCCCAGAAACTTGGAAGCTaGCATTTGGGGACCCTAAGGATGGTAGTCACTGCA | + |
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Preference number: 3 (lower is better) Translates to: TEKCRKAQKLGS*HLGTLRMVVTA Trigger: TGCAGTGACTACCATCCTTAGGGTCCCCAAATGCCAGCTTCCAAGTTTCTGGGCCTTTCTACACTTTTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | AATGTTAACCACAATTGTGGTGACCTTCTGCTCCTTCTCGATGGTTTCCAGGAACTTGGAAGCTGGCATTaGGGGACCCTAAGGATGGTA | + |
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Preference number: 3 (lower is better) Translates to: NVNHNCGDLLLLLDGFQELGSWH*GTLRMV Trigger: TACCATCCTTAGGGTCCCCAAATGCCAGCTTCCAAG...TTCCTGGAAACCATCGAGAAGGAGCAGAAGGTCACCACAATTGTGGTTAACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 72 bp | TACACAAACCCATACCTAGGCCCAAAACTCAACTTCTaGTGCATATCCTGCATGCACTGCCTCCGGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: YTNPYLGPKLNF*CISCMHCLRYL Trigger: CAAATACCGGAGGCAGTGCATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CCA 72 bp | GCCCCTGCTTCTAACATAGGTGTCTCATTTAAGCACTaGCTCAAAGGCCACTTGCAGAACCTTTTCTCTACA | + |
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Preference number: 3 (lower is better) Translates to: APASNIGVSFKH*LKGHLQNLFST Trigger: TGTAGAGAAAAGGTTCTGCAAGTGGCCTTTGAGCCAGTGCTTAAATGAGACACCTATGTTAGAAGCAGGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAGAACTTGACCATTGGGTACTCTACTGCAAGGCACGCTAAGCTGCTGTTGAATCCCTGTCAGAAGTaGTTCTGTTTATACATGGAG | + |
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Preference number: 3 (lower is better) Translates to: LQNLTIGYSTARHAKLLLNPCQK*FCLYME Trigger: CTCCATGTATAAACAGAACAACTTCTGACAGGGATT...CAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGTGCCAATATGTGCCACCATACCTAGGTCTCTTTCCTATTCTAATAGTTTCACACAACGGTGTTTTTaGTTGCCCCAGAGAATGGAA | + |
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Preference number: 3 (lower is better) Translates to: PVPICATIPRSLSYSNSFTQRCF*LPQRME Trigger: TTCCATTCTCTGGGGCAACAAAAAACACCGTTGTGT...GAAACTATTAGAATAGGAAAGAGACCTAGGTATGGTGGCACATATTGGCACTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAGAACTTGACCATTGGGTACTCTACTGCAAGGCACGCTAAGCTGCTGTTGCTCAGTGTCAGCAGTTaGTTTTGTTTTCCGATTATA | + |
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Preference number: 3 (lower is better) Translates to: LQNLTIGYSTARHAKLLLLSVSS*FCFPII Trigger: TATAATCGGAAAACAAAACAAACTGCTGACACTGAG...CAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAGAACTTGACCATTGGGTACTCTACTGCAAGGCACGCTAAGCTGCTGTTGAATGAGTTCATATTCTaGAATGCTCATCTGAGAACG | + |
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Preference number: 3 (lower is better) Translates to: LQNLTIGYSTARHAKLLLNEFIF*NAHLRT Trigger: CGTTCTCAGATGAGCATTCAAGAATATGAACTCATT...CAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 72 bp | CACTGTGTAAAGGATAGACATGAGATACTGACATGGTaGAGGCTTATTCAATGTCCTCGTCTTCCATGTTGG | + |
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Preference number: 3 (lower is better) Translates to: HCVKDRHEILTW*RLIQCPRLPCW Trigger: CCAACATGGAAGACGAGGACATTGAATAAGCCTTCACCATGTCAGTATCTCATGTCTATCCTTTACACAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR-3UTR CAA 90 bp | ATACACAAACCCATACCTAGGCCCAAAACTCAACTTCTGATGCATATCCTGCATCCCTTCACAATCTGTTaGAAACAAATGAGGAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: IHKPIPRPKTQLLMHILHPFTIC*KQMRRG Trigger: TCCTCTCCTCATTTGTTTCAAACAGATTGTGAAGGG...ATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 72 bp | CATCATAGTCCTGCTAGTTCAAGCAACCAAGCCTCATaGATATTGATTTGGAGATACATTCGAGAATCCCTG | + |
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Preference number: 3 (lower is better) Translates to: HHSPASSSNQAS*ILIWRYIRESL Trigger: CAGGGATTCTCGAATGTATCTCCAAATCAATATTCATGAGGCTTGGTTGCTTGAACTAGCAGGACTATGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 72 bp | TTTGGGGACCCTAAGGATGGTAGTCACTGCATCTGCTaGCTGTTTTATAATACTTGTTTCTGCCTCTTGTAT | + |
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Preference number: 3 (lower is better) Translates to: FGDPKDGSHCIC*LFYNTCFCLLY Trigger: ATACAAGAGGCAGAAACAAGTATTATAAAACAGTCAGCAGATGCAGTGACTACCATCCTTAGGGTCCCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CCA 72 bp | TCGAGAATCCCTGTCAGAAGTTGTTCTGTTTATACATaGAGGCATAGATACTTAGGCATACAGGCACATTTC | + |
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Preference number: 3 (lower is better) Translates to: SRIPVRSCSVYT*RHRYLGIQAHF Trigger: GAAATGTGCCTGTATGCCTAAGTATCTATGCCTCCATGTATAAACAGAACAACTTCTGACAGGGATTCTCGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR TCA 72 bp | TTTTGTTTTCCGATTATAGGCACTACCCAGATCTGCTaGCTCAGAACCTATAAGGGTGATGTTGAATTGTCT | + |
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Preference number: 3 (lower is better) Translates to: FCFPIIGTTQIC*LRTYKGDVELS Trigger: AGACAATTCAACATCACCCTTATAGGTTCTGAGTCAGCAGATCTGGGTAGTGCCTATAATCGGAAAACAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CCA 72 bp | CCCTTTAGAAAATGTGATTGTCTCGTCCACACTGCATaGTTACATAAAGAACCAACTTCTGTCTTTATGTGT | + |
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Preference number: 3 (lower is better) Translates to: PFRKCDCLVHTA*LHKEPTSVFMC Trigger: ACACATAAAGACAGAAGTTGGTTCTTTATGTAACCATGCAGTGTGGACGAGACAATCACATTTTCTAAAGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| CDS-3UTR TCA 90 bp | TTCCAGGAATTGCTCCCCTGTTTCCAGCTCATACACAAACCCATACCTAGGCCCCTTGCTGGGTGGAATTaGATCACCATCTTCACTTTC | + |
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Preference number: 4 (lower is better) Translates to: FQELLPCFQLIHKPIPRPLAGWN*ITIFTF Trigger: GAAAGTGAAGATGGTGATTCAATTCCACCCAGCAAG...GGGCCTAGGTATGGGTTTGTGTATGAGCTGGAAACAGGGGAGCAATTCCTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| CDS-3UTR TCA 90 bp | GCCCCTGACACCATCCTCGTAAATGTTAACCACAATTGTGGTGACCTTCTGCTCGAGAGGACATTTGTCTaGGGATTTCCTTCTTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: APDTILVNVNHNCGDLLLERTFV*GFPSCW Trigger: CCAGCAAGAAGGAAATCCTCAGACAAATGTCCTCTC...GAGCAGAAGGTCACCACAATTGTGGTTAACATTTACGAGGATGGTGTCAGGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| CDS-3UTR CCA 90 bp | GCACTACCCAGATCTGCTGACTCAGAACCTATAAGGGTGATGTTGAATTGTCTGCATTTATTACTCCTTTaGGTCCTGTGTGCGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: ALPRSADSEPIRVMLNCLHLLLL*VLCAWP Trigger: AGGCCACGCACACAGGACCCAAAGGAGTAATAAATG...CAGACAATTCAACATCACCCTTATAGGTTCTGAGTCAGCAGATCTGGGTAGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
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| 3UTR CAA 72 bp | GTAACTAAGACTCTTGCAATGCTGGCTTTCCTAGTGTaGAGCTTCTTCTGCTTATGTCCTCCCGGATCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: VTKTLAMLAFLV*SFFCLCPPGSS Trigger: GGAAGATCCGGGAGGACATAAGCAGAAGAAGCTCAACACTAGGAAAGCCAGCATTGCAAGAGTCTTAGTTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR CCA 90 bp | ATACACAAACCCATACCTAGGCCCAAAACTCAACTTCTGATGCATATCCTGCATTGGGTCCTGTGTGCGTaGCCTGTCCTTCAAAATCTT | + |
|
Preference number: 4 (lower is better) Translates to: IHKPIPRPKTQLLMHILHWVLCA*PVLQNL Trigger: AAGATTTTGAAGGACAGGCCACGCACACAGGACCCA...ATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| 3UTR CAA 72 bp | CCCGCTCCGGTATTAGAAGCTTTTATTTTACAGAACTaGACCATTGGGTACTCTACTGCAAGGCACGCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: PAPVLEAFILQN*TIGYSTARHAK Trigger: CTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAAAATAAAAGCTTCTAATACCGGAGCGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR GCA 90 bp | ATACATTCGAGAATCCCTGTCAGAAGTTGTTCTGTTTATACATGGAGGCATAGACCTTTGGGTCCTGTGTaGGTGGCCTGTCCTTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: IHSRIPVRSCSVYTWRHRPLGPV*VACPSK Trigger: TTTTGAAGGACAGGCCACGCACACAGGACCCAAAGG...TCTATGCCTCCATGTATAAACAGAACAACTTCTGACAGGGATTCTCGAATGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCCTTTGGGTCCTGTGTaGGTGGCCTGTCCTTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLPLGPV*VACPSK Trigger: TTTTGAAGGACAGGCCACGCACACAGGACCCAAAGG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR TCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGAGTCATCTCTGCTCTaGGGAGAGGACATTTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLESSLL*GEDICL Trigger: CAGACAAATGTCCTCTCCTCAGAGCAGAGATGACTC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR GCA 90 bp | ATACACAAACCCATACCTAGGCCCAAAACTCAACTTCTGATGCATATCCTGCATCTTTTGAGTCATCTCTaGTCTGAGGAGAGGACATTT | + |
|
Preference number: 4 (lower is better) Translates to: IHKPIPRPKTQLLMHILHLLSHL*SEERTF Trigger: AAATGTCCTCTCCTCAGAGCAGAGATGACTCAAAAG...ATGCAGGATATGCATCAGAAGTTGAGTTTTGGGCCTAGGTATGGGTTTGTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCATATCCTGCATGCACTaGCTCCGGTATTTGCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLISCMH*LRYLRR Trigger: CCTTCGCAAATACCGGAGGCAGTGCATGCAGGATAT...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGATGCATATCCTGCATaGACTGCCTCCGGTATTTGC | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLDAYPA*TASGIC Trigger: GCAAATACCGGAGGCAGTGCATGCAGGATATGCATC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR CCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCTGGGTCCTGTGTGCGTaGCCTGTCCTTCAAAATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLWVLCA*PVLQNL Trigger: AAGATTTTGAAGGACAGGCCACGCACACAGGACCCA...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR TCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGAGAGGACATTTGTCTaGGGATTTCCTTCTTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLERTFV*GFPSCW Trigger: CCAGCAAGAAGGAAATCCTCAGACAAATGTCCTCTC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCATGGTTTCCAGGAATTaGTCCCCTGTTTCCAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLMVSRN*SPVSSS Trigger: TGAGCTGGAAACAGGGGAGCAATTCCTGGAAACCAT...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCATTGTGGTGACCTTCTaGTCCTTCTCGATGGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLIVVTF*SFSMVS Trigger: GGAAACCATCGAGAAGGAGCAGAAGGTCACCACAAT...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR CCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCATTTATTACTCCTTTaGGTCCTGTGTGCGTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLHLLLL*VLCAWP Trigger: AGGCCACGCACACAGGACCCAAAGGAGTAATAAATG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCCTCGTCTTCCATGTTaGTCTGCTCTAGGTCATGTA | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLPRLPC*SALGHV Trigger: TACATGACCTAGAGCAGACCAACATGGAAGACGAGG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR TCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCTTGCTGGGTGGAATTaGATCACCATCTTCACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLLAGWN*ITIFTF Trigger: GAAAGTGAAGATGGTGATTCAATTCCACCCAGCAAG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR TCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCCAAAACTCAACTTCTaGTGCATATCCTGCATGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLPKLNF*CISCMH Trigger: GTGCATGCAGGATATGCATCAGAAGTTGAGTTTTGG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR CCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCACAGAACTTGACCATTaGGTACTCTACTGCAAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLTELDH*VLYCKA Trigger: TGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGT...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| 3UTR CAA 72 bp | CCCAGATCTGCTGACTCAGAACCTATAAGGGTGATGTaGAATTGTCTGTATTTTAACAAGCCTTCTAGGTTA | + |
|
Preference number: 4 (lower is better) Translates to: PRSADSEPIRVM*NCLYFNKPSRL Trigger: TAACCTAGAAGGCTTGTTAAAATACAGACAATTCAACATCACCCTTATAGGTTCTGAGTCAGCAGATCTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| 3UTR CAA 72 bp | CCGGTATTTGCGAAGGCAACTCTCATCTTCTTTGTCTaGATGAATGAGTTCATATTCTTGAATGCTCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: PVFAKATLIFFV*MNEFIFLNAHL Trigger: CAGATGAGCATTCAAGAATATGAACTCATTCATCAAGACAAAGAAGATGAGAGTTGCCTTCGCAAATACCGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCTTTTGAGTCATCTCTaGTCTGAGGAGAGGACATTT | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLLLSHL*SEERTF Trigger: AAATGTCCTCTCCTCAGAGCAGAGATGACTCAAAAG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGGATTTCCTTCTTGCTaGGTGGAATTGAATCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLGFPSC*VELNHH Trigger: ATGGTGATTCAATTCCACCCAGCAAGAAGGAAATCC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| 3UTR CAA 72 bp | AATTCTTCAGCAAATTGTTCAGCCACACTAATAAAATaGCTTATGAGTTCCCCACCTTTGTACACCAGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: NSSANCSATLIK*LMSSPPLYTSN Trigger: GTTGCTGGTGTACAAAGGTGGGGAACTCATAAGCAATTTTATTAGTGTGGCTGAACAATTTGCTGAAGAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR TCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCTTATTTTACAGAACTTaGCCATTGGGTACTCTACTG | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLLFYRT*PLGTLL Trigger: CAGTAGAGTACCCAATGGTCAAGTTCTGTAAAATAA...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR GCA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGTTCATATTCTTGAATaGTCATCTTTCTGCTCATTC | + |
|
Preference number: 4 (lower is better) Translates to: TELERDFYNDLNIDITHLVHILE*SSFCSF Trigger: GAATGAGCAGAAAGATGAGCATTCAAGAATATGAAC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS-3UTR CAA 90 bp | CCAGTGCCAATATGTGCCACCATACCTAGGTCTCTTTCCTATTCTAATAGTTTCTCATTTATTACTCCTTaGGGTCCTGTGTGCGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PVPICATIPRSLSYSNSFSFITP*GPVCVA Trigger: GGCCACGCACACAGGACCCAAAGGAGTAATAAATGA...GAAACTATTAGAATAGGAAAGAGACCTAGGTATGGTGGCACATATTGGCACTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR CAA 90 bp | TTACAGAACTTGACCATTGGGTACTCTACTGCAAGGCACGCTAAGCTGCTGTTGTCTTGCTGGGTGGAATaGAATCACCATCTTCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: LQNLTIGYSTARHAKLLLSCWVE*NHHLHF Trigger: AAAGTGAAGATGGTGATTCAATTCCACCCAGCAAGA...CAACAGCAGCTTAGCGTGCCTTGCAGTAGAGTACCCAATGGTCAAGTTCTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR CAA 90 bp | GCACTACCCAGATCTGCTGACTCAGAACCTATAAGGGTGATGTTGAATTGTCTGCTGAGGAGAGGACATTaGTCTGAGGATTTCCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ALPRSADSEPIRVMLNCLLRRGH*SEDFLL Trigger: AAGAAGGAAATCCTCAGACAAATGTCCTCTCCTCAG...CAGACAATTCAACATCACCCTTATAGGTTCTGAGTCAGCAGATCTGGGTAGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185698.2 |
||
| CDS-3UTR CAA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCTCATTTATTACTCCTTaGGGTCCTGTGTGCGTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: TELERDFYNDLNIDITHLSFITP*GPVCVA Trigger: GGCCACGCACACAGGACCCAAAGGAGTAATAAATGA...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CAA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCTGAGGATTTCCTTCTaGCTGGGTGGAATTGAATCA | + |
|
Preference number: 5 (lower is better) Translates to: TELERDFYNDLNIDITHLLRISF*LGGIES Trigger: TGATTCAATTCCACCCAGCAAGAAGGAAATCCTCAG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CAA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCCTGAGGAGAGGACATTaGTCTGAGGATTTCCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: TELERDFYNDLNIDITHLLRRGH*SEDFLL Trigger: AAGAAGGAAATCCTCAGACAAATGTCCTCTCCTCAG...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CAA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCTCTTGCTGGGTGGAATaGAATCACCATCTTCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: TELERDFYNDLNIDITHLSCWVE*NHHLHF Trigger: AAAGTGAAGATGGTGATTCAATTCCACCCAGCAAGA...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000191228.7 |
||
| CDS-3UTR CAA 90 bp | ACGGAACTTGAAAGGGATTTTTACAATGATCTAAACATTGACATTACCCACCTCGCCACACTAATAAAATaGCTTATGAGTTCCCCACCT | + |
|
Preference number: 5 (lower is better) Translates to: TELERDFYNDLNIDITHLATLIK*LMSSPP Trigger: AGGTGGGGAACTCATAAGCAATTTTATTAGTGTGGC...GAGGTGGGTAATGTCAATGTTTAGATCATTGTAAAAATCCCTTTCAAGTTCCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000165062.8 ENSMUST00000191228.7 |
||
| CDS TCA 90 bp | TCCGGTATTTGCGAAGGCAACTCTCATCTTCTTTGTCTTGATGAATaGGTTCATATTCTTGAATGCTCATCTTTCTGCTCATTCTTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: SGICEGNSHLLCLDE*VHILECSSFCSFFL Trigger: AAGAAAGAATGAGCAGAAAGATGAGCATTCAAGAATATGAACTCATTCATCAAGACAAAGAAGATGAGAGTTGCCTTCGCAAATACCGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000186572.7 ENSMUST00000191228.7 |
||
| CDS CAA 90 bp | GCACTGCCTCCGGTATTTGCGAAGGCAACTCTCATCTTCTTTGTCTaGATGAATGAGTTCATATTCTTGAATGCTCATCTTTCTGCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: ALPPVFAKATLIFFV*MNEFIFLNAHLSAH Trigger: ATGAGCAGAAAGATGAGCATTCAAGAATATGAACTCATTCATCAAGACAAAGAAGATGAGAGTTGCCTTCGCAAATACCGGAGGCAGTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000186572.7 ENSMUST00000191228.7 |
||
| CDS TCA 72 bp | TTTCTGCTCATTCTTTCTTTTGAGTCATCTCTGCTCTaGGGAGAGGACATTTGTCTGAGGATTTCCTTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: FLLILSFESSLL*GEDICLRISFL Trigger: CAAGAAGGAAATCCTCAGACAAATGTCCTCTCCTCAGAGCAGAGATGACTCAAAAGAAAGAATGAGCAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000165062.8 ENSMUST00000185698.2 ENSMUST00000186572.7 ENSMUST00000191228.7 |
||
| CDS CAA 72 bp | CCGGTATTTGCGAAGGCAACTCTCATCTTCTTTGTCTaGATGAATGAGTTCATATTCTTGAATGCTCATCTT | + |
|
Preference number: 6 (lower is better) Translates to: PVFAKATLIFFV*MNEFIFLNAHL Trigger: AAGATGAGCATTCAAGAATATGAACTCATTCATCAAGACAAAGAAGATGAGAGTTGCCTTCGCAAATACCGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000165062.8 ENSMUST00000186572.7 ENSMUST00000191228.7 |
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