Pregenerated sensors for PCTP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020553Ensembl transcript IDs: ENSMUST00000020864.9
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGGTAACAGGCTCTGAGTATGACCATTGGGAAAGAAGGCAGCAATaGAGCCGATGGAGCTGGCCAGAGGCAAGGTTGCTTGGGAATGAG | + |
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Preference number: 1 (lower is better) Translates to: KVTGSEYDHWERRQQ*SRWSWPEARLLGNE Trigger: CTCATTCCCAAGCAACCTTGCCTCTGGCCAGCTCCATCGGCTCCATTGCTGCCTTCTTTCCCAATGGTCATACTCAGAGCCTGTTACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 90 bp | GCAGTCAAATGCACAGCTCGAGAGGTAGAGGCAGCTATTTCTCAGTaGATGGGAAAGGAAAAATCCAGATGTGGGCAATTAGGAAGCCTT | + |
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Preference number: 1 (lower is better) Translates to: AVKCTAREVEAAISQ*MGKEKSRCGQLGSL Trigger: AAGGCTTCCTAATTGCCCACATCTGGATTTTTCCTTTCCCATCCACTGAGAAATAGCTGCCTCTACCTCTCGAGCTGTGCATTTGACTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR TCA 90 bp | GCATTTAAATTTAATGGGTGTTTTGCCTGCATGTCCATAAGGGCATaGTTTGCATGCAGTTATCTGTGGAAGCCAGAAGAGGGTGTCACA | + |
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Preference number: 1 (lower is better) Translates to: AFKFNGCFACMSIRA*FACSYLWKPEEGVT Trigger: TGTGACACCCTCTTCTGGCTTCCACAGATAACTGCATGCAAATCATGCCCTTATGGACATGCAGGCAAAACACCCATTAAATTTAAATGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CAA 90 bp | GATGGAGCTGGCCAGAGGCAAGGTTGCTTGGGAATGAGTAGCGCTTaGAAGATGGGAAGTATGAATGGAAGGGCGAGCCTCAGGTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: DGAGQRQGCLGMSSA*KMGSMNGRASLRWC Trigger: ACACCACCTGAGGCTCGCCCTTCCATTCATACTTCCCATCTTCAAAGCGCTACTCATTCCCAAGCAACCTTGCCTCTGGCCAGCTCCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | CACTCGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAACCTGGTCTATCAGAGATGTCCTTCATaGATGACGGAGTCCCAGTCC | + |
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Preference number: 2 (lower is better) Translates to: HSRGRGRWISEFEANLVYQRCPS*MTESQS Trigger: GGACTGGGACTCCGTCATCCATGAAGGACATCTCTG...ATAGACCAGGTTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | AGAAGCCTAAGTCACTGCGTTTATTCACAGAACACAACTTTCTTCCCAGAAAAGTGGAGCCGATGGAGCTaGCCAGAGGCAAGGTTGCTT | + |
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Preference number: 2 (lower is better) Translates to: RSLSHCVYSQNTTFFPEKWSRWS*PEARLL Trigger: AAGCAACCTTGCCTCTGGCCAGCTCCATCGGCTCCA...CTTTTCTGGGAAGAAAGTTGTGTTCTGTGAATAAACGCAGTGACTTAGGCTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAGCCTAAGTCACTGCGTTTATTCACAGAACACAACTTTCTTCCCAGAAAAGGGCCAGAGGCAAGGTTaGTTGGGAATGAGTAGCGCT | + |
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Preference number: 2 (lower is better) Translates to: RSLSHCVYSQNTTFFPEKGQRQG*LGMSSA Trigger: AGCGCTACTCATTCCCAAGCAACCTTGCCTCTGGCC...CTTTTCTGGGAAGAAAGTTGTGTTCTGTGAATAAACGCAGTGACTTAGGCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | GCGTATGCCACAGGGAAAGTTAAAATTAGAGAGAAGCTGTGTTCATTGACAAGAGAAAGAAGGCAGCAATaGAGCCGATGGAGCTGGCCA | + |
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Preference number: 2 (lower is better) Translates to: AYATGKVKIREKLCSLTRERRQQ*SRWSWP Trigger: TGGCCAGCTCCATCGGCTCCATTGCTGCCTTCTTTC...TCTTGTCAATGAACACAGCTTCTCTCTAATTTTAACTTTCCCTGTGGCATACGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR TCA 90 bp | TACAGAATGTATTTTCCTACTAACATCGAGGATCAAACGCAGGGTTCTGAGTTCGAGAGAGTCCTGAAGTaGGCCTGCTTTCCAAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: YRMYFPTNIEDQTQGSEFERVLK*ACFPRR Trigger: CCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTC...GAACTCAGAACCCTGCGTTTGATCCTCGATGTTAGTAGGAAAATACATTCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR GCA 90 bp | GCGTATGCCACAGGGAAAGTTAAAATTAGAGAGAAGCTGTGTTCATTGACAAGAGGTCATCTCAACATATaGTCCGTTAGTGCTGGGACA | + |
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Preference number: 2 (lower is better) Translates to: AYATGKVKIREKLCSLTRGHLNI*SVSAGT Trigger: TGTCCCAGCACTAACGGAGCATATGTTGAGATGACC...TCTTGTCAATGAACACAGCTTCTCTCTAATTTTAACTTTCCCTGTGGCATACGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CAA 90 bp | GTACACTTTAAGGAATCCCACTTAAACAATCCCTTTCTTCTGCCTTaGCATCCTGAGTGTCCATGTTCGTTAATCAAGGTTTGCACACAG | + |
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Preference number: 2 (lower is better) Translates to: VHFKESHLNNPFLLP*HPECPCSLIKVCTQ Trigger: CTGTGTGCAAACCTTGATTAACGAACATGGACACTCAGGATGCAAAGGCAGAAGAAAGGGATTGTTTAAGTGGGATTCCTTAAAGTGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR GCA 90 bp | GCGTATGCCACAGGGAAAGTTAAAATTAGAGAGAAGCTGTGTTCATTGACAAGAACAATCCCTTTCTTCTaGCTTTGCATCCTGAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: AYATGKVKIREKLCSLTRTIPFF*LCILSV Trigger: GACACTCAGGATGCAAAGGCAGAAGAAAGGGATTGT...TCTTGTCAATGAACACAGCTTCTCTCTAATTTTAACTTTCCCTGTGGCATACGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | AGAAGCCTAAGTCACTGCGTTTATTCACAGAACACAACTTTCTTCCCAGAAAAGTCTGAGTATGACCATTaGGAAAGAAGGCAGCAATGG | + |
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Preference number: 2 (lower is better) Translates to: RSLSHCVYSQNTTFFPEKSEYDH*ERRQQW Trigger: CCATTGCTGCCTTCTTTCCCAATGGTCATACTCAGA...CTTTTCTGGGAAGAAAGTTGTGTTCTGTGAATAAACGCAGTGACTTAGGCTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | GCGTATGCCACAGGGAAAGTTAAAATTAGAGAGAAGCTGTGTTCATTGACAAGAAAGGTTTGCACACAGTaGTTACAATTTTCCCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: AYATGKVKIREKLCSLTRKVCTQ*LQFSPE Trigger: CTCAGGGGAAAATTGTAACCACTGTGTGCAAACCTT...TCTTGTCAATGAACACAGCTTCTCTCTAATTTTAACTTTCCCTGTGGCATACGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CCA 90 bp | CATCAAATCACTACTTCCATTTCACTCCATTGTAAACCATTACTGTCCCTTCAAGGAAAAATCCAGATGTaGGCAATTAGGAAGCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: HQITTSISLHCKPLLSLQGKIQM*AIRKPW Trigger: CCAAGGCTTCCTAATTGCCCACATCTGGATTTTTCC...TTGAAGGGACAGTAATGGTTTACAATGGAGTGAAATGGAAGTAGTGATTTGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR GCA 72 bp | TGGGCTATGCGCAAGCCATCTTTGAAGCCTGAGGCTTaGAGTCAAATGCACAGCTCGAGAGGTAGAGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: WAMRKPSLKPEA*SQMHSSRGRGS Trigger: GCTGCCTCTACCTCTCGAGCTGTGCATTTGACTGCAAGCCTCAGGCTTCAAAGATGGCTTGCGCATAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 72 bp | GGCTCTGAGTATGACCATTGGGAAAGAAGGCAGCAATaGAGCCGATGGAGCTGGCCAGAGGCAAGGTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: GSEYDHWERRQQ*SRWSWPEARLL Trigger: AAGCAACCTTGCCTCTGGCCAGCTCCATCGGCTCCATTGCTGCCTTCTTTCCCAATGGTCATACTCAGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR TCA 72 bp | GGGCTAAAGACCACTTCTGGGTGCAAGAGAGAGTCCTaGAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTA | + |
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Preference number: 3 (lower is better) Translates to: GLKTTSGCKRES*SEPAFQEGLLL Trigger: TAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGCACCCAGAAGTGGTCTTTAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR GCA 72 bp | GAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTaGTTCTATAGCTTGTCGTCCTTCCTCCTTTCACCC | + |
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Preference number: 3 (lower is better) Translates to: ESPEVSLLSKKG*FYSLSSFLLSP Trigger: GGGTGAAAGGAGGAAGGACGACAAGCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR GCA 72 bp | TGTGGGCAATTAGGAAGCCTTGGTCATCTCAACATATaGTCCGTTAGTGCTGGGACACCCCTCAGAGGAGTC | + |
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Preference number: 3 (lower is better) Translates to: CGQLGSLGHLNI*SVSAGTPLRGV Trigger: GACTCCTCTGAGGGGTGTCCCAGCACTAACGGAGCATATGTTGAGATGACCAAGGCTTCCTAATTGCCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR TCA 72 bp | AAAGACCACTTCTGGGTGCAAGAGAGAGTCCTGAAGTaGGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCT | + |
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Preference number: 3 (lower is better) Translates to: KDHFWVQERVLK*ACFPRRAASIA Trigger: AGCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGCACCCAGAAGTGGTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR TCA 72 bp | GAAGACACTATCATTGGGCTATGCGCAAGCCATCTTTaGAGCCTGAGGCTTGCAGTCAAATGCACAGCTCGA | + |
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Preference number: 3 (lower is better) Translates to: EDTIIGLCASHL*SLRLAVKCTAR Trigger: TCGAGCTGTGCATTTGACTGCAAGCCTCAGGCTTCAAAGATGGCTTGCGCATAGCCCAATGATAGTGTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 72 bp | CTCTATCTCCAGTATTCGAACATGGAAGGTCAACTGTaGGCTAAAGACCACTTCTGGGTGCAAGAGAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: LYLQYSNMEGQL*AKDHFWVQERV Trigger: GACTCTCTCTTGCACCCAGAAGTGGTCTTTAGCCCACAGTTGACCTTCCATGTTCGAATACTGGAGATAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CAA 90 bp | TACAGAATGTATTTTCCTACTAACATCGAGGATCAAACGCAGGGTTCTGAGTTCGAAACACAGCCCCACTaGCTTGTCACCCCAAACCCC | + |
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Preference number: 3 (lower is better) Translates to: YRMYFPTNIEDQTQGSEFETQPH*LVTPNP Trigger: GGGGTTTGGGGTGACAAGCAAGTGGGGCTGTGTTTC...GAACTCAGAACCCTGCGTTTGATCCTCGATGTTAGTAGGAAAATACATTCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CAA 90 bp | ATTGTAAACCATTACTGTCCCTTCAACATCTCCAAACAGTCTAGAATGGAAAGTATGCGCAAGCCATCTTaGAAGCCTGAGGCTTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: IVNHYCPFNISKQSRMESMRKPS*KPEACS Trigger: ACTGCAAGCCTCAGGCTTCAAAGATGGCTTGCGCAT...ACTTTCCATTCTAGACTGTTTGGAGATGTTGAAGGGACAGTAATGGTTTACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 72 bp | GAGTGTCCATGTTCGTTAATCAAGGTTTGCACACAGTaGTTACAATTTTCCCCTGAGATCATTAAGGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: ECPCSLIKVCTQ*LQFSPEIIKAV Trigger: CACAGCCTTAATGATCTCAGGGGAAAATTGTAACCACTGTGTGCAAACCTTGATTAACGAACATGGACACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 72 bp | AATTACATAGAAGGAGATGAGTTGCCACTTGTGTGTTaGCAATCTAAACGTGAACCAGTGTCCCCTGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: NYIEGDELPLVC*QSKREPVSPER Trigger: TCTTTCAGGGGACACTGGTTCACGTTTAGATTGCCAACACACAAGTGGCAACTCATCTCCTTCTATGTAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR-3UTR CAA 90 bp | TACAGAATGTATTTTCCTACTAACATCGAGGATCAAACGCAGGGTTCTGAGTTCGGAATGAGTAGCGCTTaGAAGATGGGAAGTATGAAT | + |
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Preference number: 3 (lower is better) Translates to: YRMYFPTNIEDQTQGSEFGMSSA*KMGSMN Trigger: ATTCATACTTCCCATCTTCAAAGCGCTACTCATTCC...GAACTCAGAACCCTGCGTTTGATCCTCGATGTTAGTAGGAAAATACATTCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CCA 72 bp | ATTACTGTCCCTTCAACATCTCCAAACAGTCTAGAATaGAAAGTCACCTTAGTACATAGGAAGACACTATCA | + |
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Preference number: 3 (lower is better) Translates to: ITVPSTSPNSLE*KVTLVHRKTLS Trigger: TGATAGTGTCTTCCTATGTACTAAGGTGACTTTCCATTCTAGACTGTTTGGAGATGTTGAAGGGACAGTAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CCA 90 bp | AGTATGACCATTGGGAAAGAAGGCAGCAATGGAGCCGATGGAGCTGGCCAGAGGCCAGCAGCCGGTAGATaGTTATGCCTGAGGCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: SMTIGKEGSNGADGAGQRPAAGR*LCLRPL Trigger: TAGAGGCCTCAGGCATAACCATCTACCGGCTGCTGG...CCTCTGGCCAGCTCCATCGGCTCCATTGCTGCCTTCTTTCCCAATGGTCATACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CAA 72 bp | GGCCAGAGGCAAGGTTGCTTGGGAATGAGTAGCGCTTaGAAGATGGGAAGTATGAATGGAAGGGCGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GQRQGCLGMSSA*KMGSMNGRASL Trigger: GAGGCTCGCCCTTCCATTCATACTTCCCATCTTCAAAGCGCTACTCATTCCCAAGCAACCTTGCCTCTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR GCA 90 bp | GCAAGAGAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCGTCCATGTAAACATCTaGGAGGAGAGCCGGCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: ARESPEVSLLSKKGCFYSVHVNI*EESRRA Trigger: TGCTCGCCGGCTCTCCTCGCAGATGTTTACATGGAC...GCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CCA 90 bp | CACTCGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCTAACCTGGTCTATAGCCAGGACGGAATTTaGCCACCCGGGTTATCAAAG | + |
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Preference number: 4 (lower is better) Translates to: HSRGRGRWISEFEANLVYSQDGI*PPGLSK Trigger: CTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCT...ATAGACCAGGTTAGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CAA 72 bp | GGAAGACACTATCATTGGGCTATGCGCAAGCCATCTTaGAAGCCTGAGGCTTGCAGTCAAATGCACAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: GRHYHWAMRKPS*KPEACSQMHSS Trigger: CGAGCTGTGCATTTGACTGCAAGCCTCAGGCTTCAAAGATGGCTTGCGCATAGCCCAATGATAGTGTCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR GCA 90 bp | GCAAGAGAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCAACTCCATTCTTGGCTaGCCAGTTAATGAGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ARESPEVSLLSKKGCFYSNSILG*PVNEPG Trigger: TCCTGGCTCATTAACTGGGCAGCCAAGAATGGAGTT...GCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR GCA 90 bp | GCAAGAGAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCCTTCACTTCCCAGTATaGCACCATCTGTTCATCACT | + |
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Preference number: 4 (lower is better) Translates to: ARESPEVSLLSKKGCFYSLHFPV*HHLFIT Trigger: AGTGATGAACAGATGGTGGCATACTGGGAAGTGAAG...GCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CCA 90 bp | GCAAGAGAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCGTCCTTCAAAAAGTTTaGAACTCCATTCTTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ARESPEVSLLSKKGCFYSVLQKV*NSILGC Trigger: GCAGCCAAGAATGGAGTTCCAAACTTTTTGAAGGAC...GCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR TCA 90 bp | ATCACTACTTCCATTTCACTCCATTGTAAACCATTACTGTCCCTTCAACATCTCGTAGATGGTTATGCCTaGGGCCTCTACCAGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: ITTSISLHCKPLLSLQHLVDGYA*GLYQEL Trigger: CAGCTCCTGGTAGAGGCCTCAGGCATAACCATCTAC...GAGATGTTGAAGGGACAGTAATGGTTTACAATGGAGTGAAATGGAAGTAGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR GCA 90 bp | CATCAAATCACTACTTCCATTTCACTCCATTGTAAACCATTACTGTCCCTTCAACTCTGCTCCCCTTCTTaGCGTCACTCTCGATCGCCA | + |
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Preference number: 4 (lower is better) Translates to: HQITTSISLHCKPLLSLQLCSPS*RHSRSP Trigger: TGGCGATCGAGAGTGACGGCAAGAAGGGGAGCAGAG...TTGAAGGGACAGTAATGGTTTACAATGGAGTGAAATGGAAGTAGTGATTTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR GCA 90 bp | ATTGTAAACCATTACTGTCCCTTCAACATCTCCAAACAGTCTAGAATGGAAAGTGCCGGTAGATGGTTATaGCTGAGGCCTCTACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IVNHYCPFNISKQSRMESAGRWL*LRPLPG Trigger: TCCTGGTAGAGGCCTCAGGCATAACCATCTACCGGC...ACTTTCCATTCTAGACTGTTTGGAGATGTTGAAGGGACAGTAATGGTTTACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| 3UTR CAA 72 bp | AAGGAATCCCACTTAAACAATCCCTTTCTTCTGCCTTaGCATCCTGAGTGTCCATGTTCGTTAATCAAGGTT | + |
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Preference number: 4 (lower is better) Translates to: KESHLNNPFLLP*HPECPCSLIKV Trigger: AACCTTGATTAACGAACATGGACACTCAGGATGCAAAGGCAGAAGAAAGGGATTGTTTAAGTGGGATTCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR TCA 90 bp | ATTGTAAACCATTACTGTCCCTTCAACATCTCCAAACAGTCTAGAATGGAAAGTTATCAAAGTAGTACATaGAAACTCTGCTCCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: IVNHYCPFNISKQSRMESYQSST*KLCSPS Trigger: AGAAGGGGAGCAGAGTTTTCATGTACTACTTTGATA...ACTTTCCATTCTAGACTGTTTGGAGATGTTGAAGGGACAGTAATGGTTTACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 90 bp | GCCTCTACCAGGAGCTGCCAATCGGCCCCGGTCAGCGCCGGTTTCTaGAGTTCAGCACAAGCCTCCCGGAACTGCTCGTCCGAGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: ASTRSCQSAPVSAGF*SSAQASRNCSSEKQ Trigger: CTGCTTCTCGGACGAGCAGTTCCGGGAGGCTTGTGCTGAACTCCAGAAACCGGCGCTGACCGGGGCCGATTGGCAGCTCCTGGTAGAGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 90 bp | CCTTATACTCATAAAGTCCACTTGGCTGGTCCAGCAGCCGGTAGATaGTTATGCCTGAGGCCTCTACCAGGAGCTGCCAATCGGCCCCGG | + |
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Preference number: 5 (lower is better) Translates to: PYTHKVHLAGPAAGR*LCLRPLPGAANRPR Trigger: CCGGGGCCGATTGGCAGCTCCTGGTAGAGGCCTCAGGCATAACCATCTACCGGCTGCTGGACCAGCCAAGTGGACTTTATGAGTATAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CAA 90 bp | GGAGCCGATGGAGCTGGCCAGAGGCAAGGTTGCTTGGGAATGAGTAGCGCTTTGGAGCCAGGACGGAATTaGGCCACCCGGGTTATCAAA | + |
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Preference number: 5 (lower is better) Translates to: GADGAGQRQGCLGMSSALEPGRN*ATRVIK Trigger: TTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTC...CAAAGCGCTACTCATTCCCAAGCAACCTTGCCTCTGGCCAGCTCCATCGGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS GCA 90 bp | GTACTGTTTCACTCGGATGACCCCAGACTTCTCGGGAAACTGAGGTaGCGAGATACTCTGGGCCAGGACCACGTAGATCTTCCTCCCGTC | + |
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Preference number: 5 (lower is better) Translates to: VLFHSDDPRLLGKLR*RDTLGQDHVDLPPV Trigger: GACGGGAGGAAGATCTACGTGGTCCTGGCCCAGAGTATCTCGGCACCTCAGTTTCCCGAGAAGTCTGGGGTCATCCGAGTGAAACAGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 90 bp | CCACATCCAGGTCTCGGCGCTGGCGGGTGTAGACGTAATCTCTGTTaGACAGCGGGAAAGGGTACTTCACTTCCCAGTATGCCACCATCT | + |
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Preference number: 5 (lower is better) Translates to: PHPGLGAGGCRRNLC*TAGKGTSLPSMPPS Trigger: AGATGGTGGCATACTGGGAAGTGAAGTACCCTTTCCCGCTGTCCAACAGAGATTACGTCTACACCCGCCAGCGCCGAGACCTGGATGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CAA 90 bp | CAGGCTCTGAGTATGACCATTGGGAAAGAAGGCAGCAATGGAGCCGATGGAGCTACTCTGCTCCCCTTCTaGCCGTCACTCTCGATCGCC | + |
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Preference number: 5 (lower is better) Translates to: QALSMTIGKEGSNGADGATLLPF*PSLSIA Trigger: GGCGATCGAGAGTGACGGCAAGAAGGGGAGCAGAGT...AGCTCCATCGGCTCCATTGCTGCCTTCTTTCCCAATGGTCATACTCAGAGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS TCA 90 bp | CGTCACTCTCGATCGCCAGGCTCTGTTTGTACTGTTTCACTCGGATaGCCCCAGACTTCTCGGGAAACTGAGGTGCCGAGATACTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RHSRSPGSVCTVSLG*PQTSRETEVPRYSG Trigger: CCCAGAGTATCTCGGCACCTCAGTTTCCCGAGAAGTCTGGGGTCATCCGAGTGAAACAGTACAAACAGAGCCTGGCGATCGAGAGTGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CAA 90 bp | GCAAGAGAGAGTCCTGAAGTGAGCCTGCTTTCCAAGAAGGGCTGCTTCTATAGCTTTGGAACTCCATTCTaGGCTGCCCAGTTAATGAGC | + |
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Preference number: 5 (lower is better) Translates to: ARESPEVSLLSKKGCFYSFGTPF*AAQLMS Trigger: GCTCATTAACTGGGCAGCCAAGAATGGAGTTCCAAA...GCTATAGAAGCAGCCCTTCTTGGAAAGCAGGCTCACTTCAGGACTCTCTCTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CAA 90 bp | TCTTTGAAGCCTGAGGCTTGCAGTCAAATGCACAGCTCGAGAGGTAGAGGCAGCTGTCCTTCAAAAAGTTaGGAACTCCATTCTTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SLKPEACSQMHSSRGRGSCPSKS*ELHSWL Trigger: CAGCCAAGAATGGAGTTCCAAACTTTTTGAAGGACA...GCTGCCTCTACCTCTCGAGCTGTGCATTTGACTGCAAGCCTCAGGCTTCAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS GCA 90 bp | GTAATCTCTGTTGGACAGCGGGAAAGGGTACTTCACTTCCCAGTATaGCACCATCTGTTCATCACTCTCCTTCTCGTAGAGTTCTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: VISVGQRERVLHFPV*HHLFITLLLVEFFH Trigger: GTGAAAGAACTCTACGAGAAGGAGAGTGATGAACAGATGGTGGCATACTGGGAAGTGAAGTACCCTTTCCCGCTGTCCAACAGAGATTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS-3UTR CAA 90 bp | TACAGAATGTATTTTCCTACTAACATCGAGGATCAAACGCAGGGTTCTGAGTTCATCGCCAGGCTCTGTTaGTACTGTTTCACTCGGATG | + |
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Preference number: 5 (lower is better) Translates to: YRMYFPTNIEDQTQGSEFIARLC*YCFTRM Trigger: CATCCGAGTGAAACAGTACAAACAGAGCCTGGCGAT...GAACTCAGAACCCTGCGTTTGATCCTCGATGTTAGTAGGAAAATACATTCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 72 bp | AGGAGCTGCCAATCGGCCCCGGTCAGCGCCGGTTTCTaGAGTTCAGCACAAGCCTCCCGGAACTGCTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: RSCQSAPVSAGF*SSAQASRNCSS Trigger: GGACGAGCAGTTCCGGGAGGCTTGTGCTGAACTCCAGAAACCGGCGCTGACCGGGGCCGATTGGCAGCTCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS TCA 72 bp | ACTTGGCTGGTCCAGCAGCCGGTAGATGGTTATGCCTaGGGCCTCTACCAGGAGCTGCCAATCGGCCCCGGT | + |
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Preference number: 6 (lower is better) Translates to: TWLVQQPVDGYA*GLYQELPIGPG Trigger: ACCGGGGCCGATTGGCAGCTCCTGGTAGAGGCCTCAGGCATAACCATCTACCGGCTGCTGGACCAGCCAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 72 bp | GGTCTCGGCGCTGGCGGGTGTAGACGTAATCTCTGTTaGACAGCGGGAAAGGGTACTTCACTTCCCAGTATG | + |
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Preference number: 6 (lower is better) Translates to: GLGAGGCRRNLC*TAGKGTSLPSM Trigger: CATACTGGGAAGTGAAGTACCCTTTCCCGCTGTCCAACAGAGATTACGTCTACACCCGCCAGCGCCGAGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS TCA 72 bp | CGATCGCCAGGCTCTGTTTGTACTGTTTCACTCGGATaGCCCCAGACTTCTCGGGAAACTGAGGTGCCGAGA | + |
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Preference number: 6 (lower is better) Translates to: RSPGSVCTVSLG*PQTSRETEVPR Trigger: TCTCGGCACCTCAGTTTCCCGAGAAGTCTGGGGTCATCCGAGTGAAACAGTACAAACAGAGCCTGGCGATCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 72 bp | CATAAAGTCCACTTGGCTGGTCCAGCAGCCGGTAGATaGTTATGCCTGAGGCCTCTACCAGGAGCTGCCAAT | + |
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Preference number: 6 (lower is better) Translates to: HKVHLAGPAAGR*LCLRPLPGAAN Trigger: ATTGGCAGCTCCTGGTAGAGGCCTCAGGCATAACCATCTACCGGCTGCTGGACCAGCCAAGTGGACTTTATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CAA 72 bp | CCCTTCTTGCCGTCACTCTCGATCGCCAGGCTCTGTTaGTACTGTTTCACTCGGATGACCCCAGACTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: PFLPSLSIARLC*YCFTRMTPDFS Trigger: CGAGAAGTCTGGGGTCATCCGAGTGAAACAGTACAAACAGAGCCTGGCGATCGAGAGTGACGGCAAGAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS GCA 72 bp | GTTGGACAGCGGGAAAGGGTACTTCACTTCCCAGTATaGCACCATCTGTTCATCACTCTCCTTCTCGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: VGQRERVLHFPV*HHLFITLLLVE Trigger: CTCTACGAGAAGGAGAGTGATGAACAGATGGTGGCATACTGGGAAGTGAAGTACCCTTTCCCGCTGTCCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CAA 90 bp | TGGAACTCCATTCTTGGCTGCCCAGTTAATGAGCCAGGACGGAATTaGGCCACCCGGGTTATCAAAGTAGTACATGAAAACTCTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: WNSILGCPVNEPGRN*ATRVIKVVHENSAP Trigger: GGGAGCAGAGTTTTCATGTACTACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATTAACTGGGCAGCCAAGAATGGAGTTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CAA 72 bp | ATTCTTGGCTGCCCAGTTAATGAGCCAGGACGGAATTaGGCCACCCGGGTTATCAAAGTAGTACATGAAAAC | + |
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Preference number: 6 (lower is better) Translates to: ILGCPVNEPGRN*ATRVIKVVHEN Trigger: GTTTTCATGTACTACTTTGATAACCCGGGTGGCCAAATTCCGTCCTGGCTCATTAACTGGGCAGCCAAGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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| CDS CCA 72 bp | GTTCTGACACGCTTTCACCATGTCCTTCAAAAAGTTTaGAACTCCATTCTTGGCTGCCCAGTTAATGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: VLTRFHHVLQKV*NSILGCPVNEP Trigger: TGGCTCATTAACTGGGCAGCCAAGAATGGAGTTCCAAACTTTTTGAAGGACATGGTGAAAGCGTGTCAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020864.9 |
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