RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCSK9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044254

Ensembl transcript IDs: ENSMUST00000049507.6

Found 157 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTAATGTCTaGTGGCAGAAAGCCAAGCACAGGCCCCCTGACCGTGAAGGAGGT +
Preference number: 1 (lower is better)
Translates to: WYTGAAGQSQLQLNV*WQKAKHRPPDREGG
Trigger: ACCTCCTTCACGGTCAGGGGGCCTGTGCTTGGCTTTCTGCCATCAGACATTAAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 90 bp GTTCTCCCACGCAGAATCTCCCCACCTTTGGCTACAAGAGAGCCATaGAGGCATATCTCTGCACCCAGCCTCAAGCACCATCCCTGCCTG +
Preference number: 1 (lower is better)
Translates to: VLPRRISPPLATREP*RHISAPSLKHHPCL
Trigger: CAGGCAGGGATGGTGCTTGAGGCTGGGTGCAGAGATATGCCTGCATGGCTCTCTTGTAGCCAAAGGTGGGGAGATTCTGCGTGGGAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 90 bp ATAGGTCCAGGAGCAAGCCATAGCCTGTCCTCTCGCTGCCCAGCCTaGCATTATTCAGGGCCAGCCACTCTGAATTTATGTCCTGACATC +
Preference number: 1 (lower is better)
Translates to: IGPGASHSLSSRCPA*HYSGPATLNLCPDI
Trigger: GATGTCAGGACATAAATTCAGAGTGGCTGGCCCTGAATAATGCCAGGCTGGGCAGCGAGAGGACAGGCTATGGCTTGCTCCTGGACCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp CCCAGCCTGGCATTATTCAGGGCCAGCCACTCTGAATTTATGTCCTaGCATCACTGGCTGTGTGACATCGCCTCTCTGGTCCTGTCTCTT +
Preference number: 1 (lower is better)
Translates to: PSLALFRASHSEFMS*HHWLCDIASLVLSL
Trigger: AAGAGACAGGACCAGAGAGGCGATGTCACACAGCCAGTGATGTCAGGACATAAATTCAGAGTGGCTGGCCCTGAATAATGCCAGGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp AGGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTaGTCTGCATTTAATCAGGGAGCCCAAAATGGTGTCTGCAATGTG +
Preference number: 1 (lower is better)
Translates to: RYGLTAGSTPGGVQN*SAFNQGAQNGVCNV
Trigger: CACATTGCAGACACCATTTTGGGCTCCCTGATTAAATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 90 bp GCTTACTATAAAAAGACAGAAGAGCTCAAAAGGATAGAGGTGTGCTaGTCAGCTGGTGTGGCCTTGGTACAGTCGCCCTCTGTCACTCCA +
Preference number: 1 (lower is better)
Translates to: AYYKKTEELKRIEVC*SAGVALVQSPSVTP
Trigger: TGGAGTGACAGAGGGCGACTGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCTGTCTTTTTATAGTAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp ATTATGATCTTCCTGAAAGACAAATACACCCTAAGGCCTGAGAACTaGGGCCTTGCAGCGAGCATCCTCAGGTTCTGGTACACTGGAGCA +
Preference number: 1 (lower is better)
Translates to: IMIFLKDKYTLRPEN*GLAASILRFWYTGA
Trigger: TGCTCCAGTGTACCAGAACCTGAGGATGCTCGCTGCAAGGCCTCAGTTCTCAGGCCTTAGGGTGTATTTGTCTTTCAGGAAGATCATAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp TCAGGGAGCCCAAAATGGTGTCTGCAATGTGAGCTGGCTGTGAGTTaGCTGTCCTTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACT +
Preference number: 1 (lower is better)
Translates to: SGSPKWCLQCELAVS*LSLWLSDSIFQSGT
Trigger: AGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGGGCTCCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 90 bp GAAGATATAGGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTaGAGAACTGATCTGCATTTAATCAGGGAGCCCAAAATGGTGTCT +
Preference number: 1 (lower is better)
Translates to: EDIGMALQLDPPLEV*RTDLHLIREPKMVS
Trigger: AGACACCATTTTGGGCTCCCTGATTAAATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACCTATATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 90 bp GAAGCTTACTATAAAAAGACAGAAGAGCTCAAAAGGATAGAGGTGTaGTGGTCAGCTGGTGTGGCCTTGGTACAGTCGCCCTCTGTCACT +
Preference number: 1 (lower is better)
Translates to: EAYYKKTEELKRIEV*WSAGVALVQSPSVT
Trigger: AGTGACAGAGGGCGACTGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCTGTCTTTTTATAGTAAGCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp TTTAATCAGGGAGCCCAAAATGGTGTCTGCAATGTGAGCTGGCTGTaGGTTGACTGTCCTTGTGGCTTTCAGACTCAATTTTCCAGTCTG +
Preference number: 1 (lower is better)
Translates to: FNQGAQNGVCNVSWL*VDCPCGFQTQFSSL
Trigger: CAGACTGGAAAATTGAGTCTGAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGGGCTCCCTGATTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 90 bp ACTGATCTGCATTTAATCAGGGAGCCCAAAATGGTGTCTGCAATGTaGGCTGGCTGTGAGTTGACTGTCCTTGTGGCTTTCAGACTCAAT +
Preference number: 1 (lower is better)
Translates to: TDLHLIREPKMVSAM*AGCELTVLVAFRLN
Trigger: ATTGAGTCTGAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGGGCTCCCTGATTAAATGCAGATCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR-3UTR CCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATGAATCTCCCCACCTTTaGCTACAAGAGAGCCATGCA +
Preference number: 2 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHESPHL*LQESHA
Trigger: TGCATGGCTCTCTTGTAGCCAAAGGTGGGGAGATTC...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR-3UTR CCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCGTACACTGGAGCAGCTaGCCAGAGCCAGCTACAGCT +
Preference number: 2 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSVHWSS*PEPATA
Trigger: AGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTAC...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR-3UTR CCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCCAGGTTCTGGTACACTaGAGCAGCTGGCCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSQVLVH*SSWPEP
Trigger: TGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTG...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CAA 90 bp TTGACTGTCCTTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTaGGTCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCT +
Preference number: 2 (lower is better)
Translates to: LTVLVAFRLNFPVWY*VFEPPRISVHYDLP
Trigger: AGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAAGGACAGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 72 bp ATAGGTCCAGGAGCAAGCCATAGCCTGTCCTCTCGCTaGCCAGCCTGGCATTATTCAGGGCCAGCCACTCTG +
Preference number: 3 (lower is better)
Translates to: IGPGASHSLSSR*PAWHYSGPATL
Trigger: CAGAGTGGCTGGCCCTGAATAATGCCAGGCTGGGCAGCGAGAGGACAGGCTATGGCTTGCTCCTGGACCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR-3UTR CAA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCAGAATCTCCCCACCTTaGGCTACAAGAGAGCCATGC +
Preference number: 3 (lower is better)
Translates to: RASSGSGTLEQLARASYSRISPP*ATREPC
Trigger: GCATGGCTCTCTTGTAGCCAAAGGTGGGGAGATTCT...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATaGGTACCCAGGGTGAGACACCAAGTTCTCCCACGC +
Preference number: 3 (lower is better)
Translates to: PDREGGASIHQE*VPRVRHQVLPR
Trigger: GCGTGGGAGAACTTGGTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp GAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTaGGACACCAAGTTCTCCCACGCAGAATCTCCCCAC +
Preference number: 3 (lower is better)
Translates to: EVLPYTRNGYPG*DTKFSHAESPH
Trigger: GTGGGGAGATTCTGCGTGGGAGAACTTGGTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp GGAGCAAGCCATAGCCTGTCCTCTCGCTGCCCAGCCTaGCATTATTCAGGGCCAGCCACTCTGAATTTATGT +
Preference number: 3 (lower is better)
Translates to: GASHSLSSRCPA*HYSGPATLNLC
Trigger: ACATAAATTCAGAGTGGCTGGCCCTGAATAATGCCAGGCTGGGCAGCGAGAGGACAGGCTATGGCTTGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp AGAAGAGCTCAAAAGGATAGAGGTGTGCTGGTCAGCTaGTGTGGCCTTGGTACAGTCGCCCTCTGTCACTCC +
Preference number: 3 (lower is better)
Translates to: RRAQKDRGVLVS*CGLGTVALCHS
Trigger: GGAGTGACAGAGGGCGACTGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp GACACCAAGTTCTCCCACGCAGAATCTCCCCACCTTTaGCTACAAGAGAGCCATGCAGGCATATCTCTGCAC +
Preference number: 3 (lower is better)
Translates to: DTKFSHAESPHL*LQESHAGISLH
Trigger: GTGCAGAGATATGCCTGCATGGCTCTCTTGTAGCCAAAGGTGGGGAGATTCTGCGTGGGAGAACTTGGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 72 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTaGAGAACTGATCTGCATTTAATCAGGGAGCCCAAA +
Preference number: 3 (lower is better)
Translates to: GMALQLDPPLEV*RTDLHLIREPK
Trigger: TTTGGGCTCCCTGATTAAATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 72 bp GGCCAGTCAGTGCACATGGTAGTGGATGGGGTAAGGTaGGGTAAGTCCTGTATGGTTCTCCAGTACAAACTG +
Preference number: 3 (lower is better)
Translates to: GQSVHMVVDGVR*GKSCMVLQYKL
Trigger: CAGTTTGTACTGGAGAACCATACAGGACTTACCGCACCTTACCCCATCCACTACCATGTGCACTGACTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp CTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTaGTCTGCATTTAATCAGGGAGCCCAAAATGGTGTC +
Preference number: 3 (lower is better)
Translates to: LTAGSTPGGVQN*SAFNQGAQNGV
Trigger: GACACCATTTTGGGCTCCCTGATTAAATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp AAAAAGACAGAAGAGCTCAAAAGGATAGAGGTGTGCTaGTCAGCTGGTGTGGCCTTGGTACAGTCGCCCTCT +
Preference number: 3 (lower is better)
Translates to: KKTEELKRIEVC*SAGVALVQSPS
Trigger: AGAGGGCGACTGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCTGTCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR GCA 72 bp TATAAAAAGACAGAAGAGCTCAAAAGGATAGAGGTGTaGTGGTCAGCTGGTGTGGCCTTGGTACAGTCGCCC +
Preference number: 3 (lower is better)
Translates to: YKKTEELKRIEV*WSAGVALVQSP
Trigger: GGGCGACTGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCTGTCTTTTTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR-3UTR CAA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCTCTGGTACTTGGTCTTaGAACCTCCAAGGATCTCTG +
Preference number: 3 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSSGTWS*NLQGSL
Trigger: CAGAGATCCTTGGAGGTTCAAAGACCAAGTACCAGA...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp GGAGCCCAAAATGGTGTCTGCAATGTGAGCTGGCTGTaGGTTGACTGTCCTTGTGGCTTTCAGACTCAATTT +
Preference number: 3 (lower is better)
Translates to: GAQNGVCNVSWL*VDCPCGFQTQF
Trigger: AAATTGAGTCTGAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGGGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp CATTTAATCAGGGAGCCCAAAATGGTGTCTGCAATGTaGGCTGGCTGTGAGTTGACTGTCCTTGTGGCTTTC +
Preference number: 3 (lower is better)
Translates to: HLIREPKMVSAM*AGCELTVLVAF
Trigger: GAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGGGCTCCCTGATTAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp TCCTGTATGGTTCTCCAGTACAAACTGAGAGTCAGATaGGGGCTCATAGCACATTATCCTGAGCAGGGCCAA +
Preference number: 3 (lower is better)
Translates to: SCMVLQYKLRVR*GLIAHYPEQGQ
Trigger: TTGGCCCTGCTCAGGATAATGTGCTATGAGCCCTCATCTGACTCTCAGTTTGTACTGGAGAACCATACAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR TCA 72 bp CCAAAATGGTGTCTGCAATGTGAGCTGGCTGTGAGTTaGCTGTCCTTGTGGCTTTCAGACTCAATTTTCCAG +
Preference number: 3 (lower is better)
Translates to: PKWCLQCELAVS*LSLWLSDSIFQ
Trigger: CTGGAAAATTGAGTCTGAAAGCCACAAGGACAGTCAACTCACAGCCAGCTCACATTGCAGACACCATTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CCA 72 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTaGTCTTTGAACCTCCAAGGATCTCTGTCCATTATG +
Preference number: 3 (lower is better)
Translates to: LWLSDSIFQSGT*SLNLQGSLSIM
Trigger: CATAATGGACAGAGATCCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACCAGCATCCCGGCCGCTaGCCACACCTGCCAGGTGGG +
Preference number: 4 (lower is better)
Translates to: DREGGASIHQEWVPRVRHQHPGR*PHLPGG
Trigger: CCCACCTGGCAGGTGTGGTCAGCGGCCGGGATGCTG...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACCCAGGAGGCCTTTGCTaGAGGCCGGCTCCGGCAGCA +
Preference number: 4 (lower is better)
Translates to: DREGGASIHQEWVPRVRHPGGLC*RPAPAA
Trigger: TGCTGCCGGAGCCGGCCTTCAGCAAAGGCCTCCTGG...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACGCCGCTGACCACACCTaGCAGGTGGGTGCCGTGGCT +
Preference number: 4 (lower is better)
Translates to: DREGGASIHQEWVPRVRHAADHT*QVGAVA
Trigger: AGCCACGGCACCCACCTGGCAGGTGTGGTCAGCGGC...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATGGCGGTGGCCACATGTaGGGCCTCATCAGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHGGGHM*GLISQA
Trigger: GGCCTGGCTGATGAGGCCGCACATGTGGCCACCGCC...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCGGCTCCGGCAGCAGATaGCAGCAGCTACTGTGGCTT +
Preference number: 4 (lower is better)
Translates to: RASSGSGTLEQLARASYSGSGSR*QQLLWL
Trigger: AAGCCACAGTAGCTGCTGCCATCTGCTGCCGGAGCC...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTACCACACCTGCCAGGTaGGTGCCGTGGCTGTCACAC +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLTTPAR*VPWLSH
Trigger: GTGTGACAGCCACGGCACCCACCTGGCAGGTGTGGT...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACAGCAGCTCCTCTTCTaGGGCACAGCGGGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: PDREGGASIHQEWVPRVRQQLLF*GTAGCS
Trigger: GCTACAGCCCGCTGTGCCCCAGAAGAGGAGCTGCTG...TCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACAGGCCAGCTCTGGCTaGAGGGGTGTTGTGGATGCT +
Preference number: 4 (lower is better)
Translates to: PDREGGASIHQEWVPRVRQASSG*RGVVDA
Trigger: AGCATCCACAACACCCCTGCAGCCAGAGCTGGCCTG...TCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGATGTGGATGCTGCAGTTaGCACGGGGAACCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: PDREGGASIHQEWVPRVRCGCCS*HGEPGS
Trigger: GCTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACA...TCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTTGGTGGCAGTGGACATaGGTCTCCAGGCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLWWQWT*VSRPAL
Trigger: CAGAGCTGGCCTGGAGACCCATGTCCACTGCCACCA...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATCTTCGCAGGCCACAGTaGCCTGCTCTGAAGGACCTG +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHLRRPQ*PALKDL
Trigger: CAGGTCCTTCAGAGCAGGTCACTGTGGCCTGCGAAG...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTAGTCAGGGTCCATCCTaGTTCGCAGGCCACAGTGAC +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLSQGPS*FAGHSD
Trigger: GTCACTGTGGCCTGCGAAGCAGGATGGACCCTGACT...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGAAGAGCTCAAAAGGATAGAGGTGTGCTGGTCAGCTGGTGTGGCCTTGGTACAGCAGGCTGTGCAGGCTaGTGCCCTTGGCCACACCAG +
Preference number: 4 (lower is better)
Translates to: RRAQKDRGVLVSWCGLGTAGCAG*CPWPHQ
Trigger: CTGGTGTGGCCAAGGGCACCAGCCTGCACAGCCTGC...TGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATTCTCCAGGCCAGCTCTaGCTGCAGGGGTGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHSPGQL*LQGCCG
Trigger: TCCACAACACCCCTGCAGCCAGAGCTGGCCTGGAGA...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTGGTCCTGTCTGCTCTaGCAGTGTCATGGACTCTTG +
Preference number: 4 (lower is better)
Translates to: RASSGSGTLEQLARASYSWSCLL*QCHGLL
Trigger: CAAGAGTCCATGACACTGCCAGAGCAGACAGGACCA...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTACCCTCACCCCCAAATaGATTGAGGGCCTTGCAGAC +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLTLTPK*IEGLAD
Trigger: GTCTGCAAGGCCCTCAATGCATTTGGGGGTGAGGGT...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCGGGCACCCTGGATGCTaGTATCTAAGAGATACACCT +
Preference number: 4 (lower is better)
Translates to: RASSGSGTLEQLARASYSGHPGC*YLRDTP
Trigger: AGGTGTATCTCTTAGATACCAGCATCCAGGGTGCCC...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATGGAAGCTGCAGCCTGTaGGAACATGGTCCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHGSCSL*EHGPSG
Trigger: ACCAGAAGGACCATGTTCTCACAGGCTGCAGCTTCC...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTGGCCCAACAGGTCACTaGTCATCTTCACCAAGAAGC +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLGPTGH*SSSPRS
Trigger: GCTTCTTGGTGAAGATGAGCAGTGACCTGTTGGGCC...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp AGAAGAGCTCAAAAGGATAGAGGTGTGCTGGTCAGCTGGTGTGGCCTTGGTACAACACCTCCACCTGGCTaGTTCCATCAGGGGAGCGGT +
Preference number: 4 (lower is better)
Translates to: RRAQKDRGVLVSWCGLGTTPPPG*FHQGSG
Trigger: ACCGCTCCCCTGATGGAAGCAGCCAGGTGGAGGTGT...TGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCGGCTGTGCAGGCTGGTaGCCTTGGCCACACCAGCAT +
Preference number: 4 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSGCAGW*PWPHQH
Trigger: ATGCTGGTGTGGCCAAGGGCACCAGCCTGCACAGCC...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATCACAATGTAGGTTCCTaGCAGCCTCCAGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHHNVGS*QPPGLL
Trigger: AAGGAGGCCTGGAGGCTGCCAGGAACCTACATTGTG...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACTCAATCTGTAGCCTCTaGGTCTCCTCCATCAGCACC +
Preference number: 4 (lower is better)
Translates to: DREGGASIHQEWVPRVRHSICSL*VSSIST
Trigger: GGTGCTGATGGAGGAGACCCAGAGGCTACAGATTGA...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTTCAATGTACTCCACATaGGGCAACTTCAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SILRFWYTGAAGQSQLQLSMYST*GNFRAR
Trigger: CCTGGCCCTGAAGTTGCCCCATGTGGAGTACATTGA...AAGCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCACAATGCCGGCCACGTaGGCAGCAGCCTGTGAGGTC +
Preference number: 4 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSTMPAT*AAACEV
Trigger: GACCTCACAGGCTGCTGCCCACGTGGCCGGCATTGT...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCGACGCCTCCCGCTCCTaGAGAAGCTGGAGCAGCTCA +
Preference number: 4 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSDASRS*RSWSSS
Trigger: TGAGCTGCTCCAGCTTCTCCAGGAGCGGGAGGCGTC...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGAAGAGCTCAAAAGGATAGAGGTGTGCTGGTCAGCTGGTGTGGCCTTGGTACAGCTGCAGGGGTGTTGTaGATGCTGCAGTTGGCACGG +
Preference number: 4 (lower is better)
Translates to: RRAQKDRGVLVSWCGLGTAAGVL*MLQLAR
Trigger: CCGTGCCAACTGCAGCATCCACAACACCCCTGCAGC...TGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACTCTTCCACTTCCCAATaGAAGCTGCAGCCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: DREGGASIHQEWVPRVRHSSTSQ*KLQPVR
Trigger: TCTCACAGGCTGCAGCTTCCATTGGGAAGTGGAAGA...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATGAGGGCTGGATTAGCTaGCTCTTCCGAATAAACTCC +
Preference number: 4 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHEGWIS*LFRINS
Trigger: GGAGTTTATTCGGAAGAGTCAGCTAATCCAGCCCTC...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp AGAAGAGCTCAAAAGGATAGAGGTGTGCTGGTCAGCTGGTGTGGCCTTGGTACAGCTCTGGCAGTGTCATaGACTCTTGCCACACACAGG +
Preference number: 4 (lower is better)
Translates to: RRAQKDRGVLVSWCGLGTALAVS*TLATHR
Trigger: CCTGTGTGTGGCAAGAGTCCATGACACTGCCAGAGC...TGTACCAAGGCCACACCAGCTGACCAGCACACCTCTATCCTTTTGAGCTCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGGCTCTGGAGCAGAAGCTaGGGAGTAGAGGCAGGCGTC +
Preference number: 4 (lower is better)
Translates to: VAFRLNFPVWYLVFEPPRLWSRS*GVEAGV
Trigger: GACGCCTGCCTCTACTCCCCAGCTTCTGCTCCAGAG...CCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCAGTCCCCAAGGTAACTaGCTGGTCCTGGGCATTCGT +
Preference number: 4 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSSPQGN*LVLGIR
Trigger: ACGAATGCCCAGGACCAGCCAGTTACCTTGGGGACT...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGGTCGCTCCAGGTTCCATaGGATGCTCTGGGCGAAGAC +
Preference number: 4 (lower is better)
Translates to: VAFRLNFPVWYLVFEPPRSLQVP*DALGED
Trigger: GTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGA...CCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACACCGCCAGGTGGGTGCCGTaGCTGTCACACTTGCTCGCC +
Preference number: 4 (lower is better)
Translates to: LNLQGSLSIMIFLKDKYTARWVP*LSHLLA
Trigger: GGCGAGCAAGTGTGACAGCCACGGCACCCACCTGGC...GGTGTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACACCCCGGAAGTTCCCAGCTaGTGCAACCAGCACCACCCC +
Preference number: 4 (lower is better)
Translates to: LNLQGSLSIMIFLKDKYTPEVPS*CNQHHP
Trigger: GGGGTGGTGCTGGTTGCAGCAGCTGGGAACTTCCGG...GGTGTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAATTGGGGGTCAGCACCTaGTGGTCCTCAGGGAACCAG +
Preference number: 4 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQLGVST*WSSGNQ
Trigger: CTGGTTCCCTGAGGACCAGCAGGTGCTGACCCCCAA...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGGAGATACACCTCCACCTaGCTGCTTCCATCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: VAFRLNFPVWYLVFEPPRRYTST*LLPSGE
Trigger: CTCCCCTGATGGAAGCAGCCAGGTGGAGGTGTATCT...CCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp GTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGGCAGCCTGTGAGAACATaGTCCTTCTGGTGGCAGTGG +
Preference number: 4 (lower is better)
Translates to: VAFRLNFPVWYLVFEPPRQPVRT*SFWWQW
Trigger: CCACTGCCACCAGAAGGACCATGTTCTCACAGGCTG...CCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACCTGTCTCATGGGTGCTaGGGGGCAGTGTGGCCACCA +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYLSHGC*GAVWPP
Trigger: TGGTGGCCACACTGCCCCCCAGCACCCATGAGACAG...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACAAGTGGATCAGCCTCTaGCGCAGCTCGGCCAGGGTA +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYKWISL*RSSARV
Trigger: TACCCTGGCCGAGCTGCGGCAGAGGCTGATCCACTT...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACAGGGCCTTGCAGACCTaGTGGCCTCCTATGGCCTCA +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYRALQT*WPPMAS
Trigger: TGAGGCCATAGGAGGCCAGCAGGTCTGCAAGGCCCT...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACACCCCCTCAATCTCCCGATaGGCACCCTGGATGCTGGTA +
Preference number: 4 (lower is better)
Translates to: LNLQGSLSIMIFLKDKYTPSISR*APWMLV
Trigger: TACCAGCATCCAGGGTGCCCATCGGGAGATTGAGGG...GGTGTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGACTGTGATGACCTCTaGAGCAGAAGCTGGGGAGTA +
Preference number: 4 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQDCDDL*SRSWGV
Trigger: TACTCCCCAGCTTCTGCTCCAGAGGTCATCACAGTC...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp TTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACACCTCCCACTCTGTGACATaGAGCATGTGCTGCAGTCAC +
Preference number: 4 (lower is better)
Translates to: LNLQGSLSIMIFLKDKYTSHSVT*SMCCSH
Trigger: GTGACTGCAGCACATGCTTCATGTCACAGAGTGGGA...GGTGTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACCAGGCCACAGTGACCTaGTCTGAAGGACCTGAGATC +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYQATVT*SEGPEI
Trigger: GATCTCAGGTCCTTCAGAGCAGGTCACTGTGGCCTG...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAACGGTCTTCCTCTGTCTaGTGCCATGCTGGGATAATT +
Preference number: 4 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQRSSSV*CHAGII
Trigger: AATTATCCCAGCATGGCACCAGACAGAGGAAGACCG...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACCCTGCTGGCCTCCTATaGCCTCAATCCAATCACCAC +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYPAGLL*PQSNHH
Trigger: GTGGTGATTGGATTGAGGCCATAGGAGGCCAGCAGG...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR GCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACCTCTGTCTGGTGCCATaGTGGGATAATTCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYLCLVP*WDNSLQ
Trigger: CTGGAGCGAATTATCCCAGCATGGCACCAGACAGAG...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR TCA 90 bp TCTTTGAACCTCCAAGGATCTCTGTCCATTATGATCTTCCTGAAAGACAAATACAGATCCCATGCTCCTTaGTTTTGCATTCCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: SLNLQGSLSIMIFLKDKYRSHAP*FCIPAL
Trigger: CAGGGCTGGAATGCAAAATCAAGGAGCATGGGATCT...GTATTTGTCTTTCAGGAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CAA 72 bp CTTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTaGGTCTTTGAACCTCCAAGGATCTCTGTCCATTAT +
Preference number: 4 (lower is better)
Translates to: LVAFRLNFPVWY*VFEPPRISVHY
Trigger: ATAATGGACAGAGATCCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
3UTR CAA 72 bp CTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTaGAACCTCCAAGGATCTCTGTCCATTATGATCTTC +
Preference number: 4 (lower is better)
Translates to: LSDSIFQSGTWS*NLQGSLSIMIF
Trigger: GAAGATCATAATGGACAGAGATCCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp AGCTGGGGAGTAGAGGCAGGCGTCGTCCCGGAAGTTCCCAGCTGCTaGAACCAGCACCACCCCAGTCCTCGCCAGGTGCCGGCAGGCAGC +
Preference number: 5 (lower is better)
Translates to: SWGVEAGVVPEVPSC*NQHHPSPRQVPAGS
Trigger: GCTGCCTGCCGGCACCTGGCGAGGACTGGGGTGGTGCTGGTTGCAGCAGCTGGGAACTTCCGGGACGACGCCTGCCTCTACTCCCCAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp AAGTTCCCAGCTGCTGCAACCAGCACCACCCCAGTCCTCGCCAGGTaGCGGCAGGCAGCGTTGAGGATGCGGCTATACCCACCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: KFPAAATSTTPVLAR*RQAALRMRLYPPAR
Trigger: CCTGGCCGGTGGGTATAGCCGCATCCTCAACGCTGCCTGCCGGCACCTGGCGAGGACTGGGGTGGTGCTGGTTGCAGCAGCTGGGAACTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp GGCACAGCGGGCTGTAGCTGTAGCTGTTCGAGTGGGCCCCGAGTGTaGCGACCACACCGTCCTACAGAGCAGCTGCCCGCCTGTCTCATG +
Preference number: 5 (lower is better)
Translates to: GTAGCSCSCSSGPRV*RPHRPTEQLPACLM
Trigger: CATGAGACAGGCGGGCAGCTGCTCTGTAGGACGGTGTGGTCGGCACACTCGGGGCCCACTCGAACAGCTACAGCTACAGCCCGCTGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp CCTGCCAGGTGGGTGCCGTGGCTGTCACACTTGCTCGCCTGTCTGTaGAAGCGTGTCCCATCCTCCTCCGGCACGCTGTTGAAGTCGGTG +
Preference number: 5 (lower is better)
Translates to: PARWVPWLSHLLACL*KRVPSSSGTLLKSV
Trigger: CACCGACTTCAACAGCGTGCCGGAGGAGGATGGGACACGCTTCCACAGACAGGCGAGCAAGTGTGACAGCCACGGCACCCACCTGGCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp CATGGGTCTCCAGGCCAGCTCTGGCTGCAGGGGTGTTGTGGATGCTaGAGTTGGCACGGGGAACCAGGCAGCATCTCGCGACGGCATAGA +
Preference number: 5 (lower is better)
Translates to: HGSPGQLWLQGCCGC*SWHGEPGSISRRHR
Trigger: TCTATGCCGTCGCGAGATGCTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACAACACCCCTGCAGCCAGAGCTGGCCTGGAGACCCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp TCTCCAGGCCAGCTCTGGCTGCAGGGGTGTTGTGGATGCTGCAGTTaGCACGGGGAACCAGGCAGCATCTCGCGACGGCATAGACACCCT +
Preference number: 5 (lower is better)
Translates to: SPGQLWLQGCCGCCS*HGEPGSISRRHRHP
Trigger: AGGGTGTCTATGCCGTCGCGAGATGCTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACAACACCCCTGCAGCCAGAGCTGGCCTGGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp TTTTGCATTCCAGCCCTGGGGCATGGCAGCAGGAAGCATAGACACTaGCCGCCTGGTGGCCAACGCACTGGCCAGGCTGACGTCTGGACC +
Preference number: 5 (lower is better)
Translates to: FCIPALGHGSRKHRH*PPGGQRTGQADVWT
Trigger: GGTCCAGACGTCAGCCTGGCCAGTGCGTTGGCCACCAGGCGGCCAGTGTCTATGCTTCCTGCTGCCATGCCCCAGGGCTGGAATGCAAAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCAGTGTGGCCACCAGGTaGGGGGTCAGCACCTGCTGG +
Preference number: 5 (lower is better)
Translates to: RASSGSGTLEQLARASYSSVATR*GVSTCW
Trigger: CCAGCAGGTGCTGACCCCCAACCTGGTGGCCACACT...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp CATGGTCCTTCTGGTGGCAGTGGACATGGGTCTCCAGGCCAGCTCTaGCTGCAGGGGTGTTGTGGATGCTGCAGTTGGCACGGGGAACCA +
Preference number: 5 (lower is better)
Translates to: HGPSGGSGHGSPGQL*LQGCCGCCSWHGEP
Trigger: TGGTTCCCCGTGCCAACTGCAGCATCCACAACACCCCTGCAGCCAGAGCTGGCCTGGAGACCCATGTCCACTGCCACCAGAAGGACCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp ACTGAACCCAGGAGGCCTTTGCTGAAGGCCGGCTCCGGCAGCAGATaGCAGCAGCTACTGTGGCTTCTCCACTGGTCCTGTCTGCTCTGG +
Preference number: 5 (lower is better)
Translates to: TEPRRPLLKAGSGSR*QQLLWLLHWSCLLW
Trigger: CCAGAGCAGACAGGACCAGTGGAGAAGCCACAGTAGCTGCTGCCATCTGCTGCCGGAGCCGGCCTTCAGCAAAGGCCTCCTGGGTTCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp GACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGACACGAACCCAGGAGGCCTTaGCTGAAGGCCGGCTCCGGC +
Preference number: 5 (lower is better)
Translates to: DREGGASIHQEWVPRVRHEPRRP*LKAGSG
Trigger: GCCGGAGCCGGCCTTCAGCAAAGGCCTCCTGGGTTC...GTGTCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp CCTTTGCTGAAGGCCGGCTCCGGCAGCAGATGGCAGCAGCTACTGTaGCTTCTCCACTGGTCCTGTCTGCTCTGGCAGTGTCATGGACTC +
Preference number: 5 (lower is better)
Translates to: PLLKAGSGSRWQQLL*LLHWSCLLWQCHGL
Trigger: GAGTCCATGACACTGCCAGAGCAGACAGGACCAGTGGAGAAGCCACAGTAGCTGCTGCCATCTGCTGCCGGAGCCGGCCTTCAGCAAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGAAGCCTCCAGGCCTCCTaGGAGCAACGGCGGAAGGTG +
Preference number: 5 (lower is better)
Translates to: PDREGGASIHQEWVPRVRSLQAS*EQRRKV
Trigger: CACCTTCCGCCGTTGCTCCAAGGAGGCCTGGAGGCT...TCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATTGCAGGCTGGTGCCCTaGGCCACACCAGCATCCCGG +
Preference number: 5 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHCRLVP*ATPASR
Trigger: CCGGGATGCTGGTGTGGCCAAGGGCACCAGCCTGCA...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCTTGTGGATGCTGCAGTaGGCACGGGGAACCAGGCAG +
Preference number: 5 (lower is better)
Translates to: RASSGSGTLEQLARASYSLWMLQ*ARGTRQ
Trigger: CTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACAA...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS TCA 90 bp GGACTCTTGCCACACACAGGTTGTCCACGCTGTAGGCTCCCAGAGTaGGGGATGCCCCAGGGAGCACATTGCATCCAGTCAGGGTCCATC +
Preference number: 5 (lower is better)
Translates to: GLLPHTGCPRCRLPE*GMPQGAHCIQSGSI
Trigger: GATGGACCCTGACTGGATGCAATGTGCTCCCTGGGGCATCCCTCACTCTGGGAGCCTACAGCGTGGACAACCTGTGTGTGGCAAGAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp CAGGCCATGTTGATGACGTCTTTGGTAGAGAAGTGGATCAGCCTCTaGCGCAGCTCGGCCAGGGTAAGTGTGGGCTCCCGGCTCAGCATC +
Preference number: 5 (lower is better)
Translates to: QAMLMTSLVEKWISL*RSSARVSVGSRLSI
Trigger: GATGCTGAGCCGGGAGCCCACACTTACCCTGGCCGAGCTGCGGCAGAGGCTGATCCACTTCTCTACCAAAGACGTCATCAACATGGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp TGCCACACACAGGTTGTCCACGCTGTAGGCTCCCAGAGTGAGGGATaGCCCAGGGAGCACATTGCATCCAGTCAGGGTCCATCCTGCTTC +
Preference number: 5 (lower is better)
Translates to: CHTQVVHAVGSQSEG*PREHIASSQGPSCF
Trigger: GAAGCAGGATGGACCCTGACTGGATGCAATGTGCTCCCTGGGGCATCCCTCACTCTGGGAGCCTACAGCGTGGACAACCTGTGTGTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CGAGCATCCTCAGGTTCTGGTACACTGGAGCAGCTGGCCAGAGCCAGCTACAGCAATGCATTGAGGGCCTaGCAGACCTGCTGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: RASSGSGTLEQLARASYSNALRA*QTCWPP
Trigger: AGGAGGCCAGCAGGTCTGCAAGGCCCTCAATGCATT...GCTGTAGCTGGCTCTGGCCAGCTGCTCCAGTGTACCAGAACCTGAGGATGCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp CTGGCTGCTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTGCCATaGTGGGATAATTCGCTCCAGGTTCCATGGGATGCTCTGGGCGAA +
Preference number: 5 (lower is better)
Translates to: LAASIRGAVFLCLVP*WDNSLQVPWDALGE
Trigger: TTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp TCCACCTGGCTGCTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTaGCATGCTGGGATAATTCGCTCCAGGTTCCATGGGATGCTCTGG +
Preference number: 5 (lower is better)
Translates to: STWLLPSGERSSSVW*HAGIIRSRFHGMLW
Trigger: CCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGCCAGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp GGGCACCCTGGATGCTGGTATCTAAGAGATACACCTCCACCTGGCTaGTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTGCCATGCTG +
Preference number: 5 (lower is better)
Translates to: GHPGCWYLRDTPPPG*FHQGSGLPLSGAML
Trigger: CAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGCCAGGTGGAGGTGTATCTCTTAGATACCAGCATCCAGGGTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp GCTGCTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTGCCATGCTaGGATAATTCGCTCCAGGTTCCATGGGATGCTCTGGGCGAAGAC +
Preference number: 5 (lower is better)
Translates to: AASIRGAVFLCLVPC*DNSLQVPWDALGED
Trigger: GTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp ACCTCCACCTGGCTGCTTCCATCAGGGGAGCGGTCTTCCTCTGTCTaGTGCCATGCTGGGATAATTCGCTCCAGGTTCCATGGGATGCTC +
Preference number: 5 (lower is better)
Translates to: TSTWLLPSGERSSSV*CHAGIIRSRFHGML
Trigger: GAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGCCAGGTGGAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp TCCTCAGGGAACCAGGCCATGTTGATGACGTCTTTGGTAGAGAAGTaGATCAGCCTCTGCCGCAGCTCGGCCAGGGTAAGTGTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: SSGNQAMLMTSLVEK*ISLCRSSARVSVGS
Trigger: GGAGCCCACACTTACCCTGGCCGAGCTGCGGCAGAGGCTGATCCACTTCTCTACCAAAGACGTCATCAACATGGCCTGGTTCCCTGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp CTCAGCGCAGGCTGCCTCCGGACACTAAGGTCTTCCACTTCCCAATaGAAGCTGCAGCCTGTGAGAACATGGTCCTTCTGGTGGCAGTGG +
Preference number: 5 (lower is better)
Translates to: LSAGCLRTLRSSTSQ*KLQPVRTWSFWWQW
Trigger: CCACTGCCACCAGAAGGACCATGTTCTCACAGGCTGCAGCTTCCATTGGGAAGTGGAAGACCTTAGTGTCCGGAGGCAGCCTGCGCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 90 bp GCTTCGCAGGCCACAGTGACCTGCTCTGAAGGACCTGAGATCCCATaGTCCTTGATTTTGCATTCCAGCCCTGGGGCATGGCAGCAGGAA +
Preference number: 5 (lower is better)
Translates to: ASQATVTCSEGPEIP*SLILHSSPGAWQQE
Trigger: TTCCTGCTGCCATGCCCCAGGGCTGGAATGCAAAATCAAGGAGCATGGGATCTCAGGTCCTTCAGAGCAGGTCACTGTGGCCTGCGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp AAGTCGGTGATGGTGACCCTGCCCTCAATCTCCCGATGGGCACCCTaGATGCTGGTATCTAAGAGATACACCTCCACCTGGCTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: KSVMVTLPSISRWAP*MLVSKRYTSTWLLP
Trigger: TGGAAGCAGCCAGGTGGAGGTGTATCTCTTAGATACCAGCATCCAGGGTGCCCATCGGGAGATTGAGGGCAGGGTCACCATCACCGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp AGATGGCAGCAGCTACTGTGGCTTCTCCACTGGTCCTGTCTGCTCTaGCAGTGTCATGGACTCTTGCCACACACAGGTTGTCCACGCTGT +
Preference number: 5 (lower is better)
Translates to: RWQQLLWLLHWSCLL*QCHGLLPHTGCPRC
Trigger: ACAGCGTGGACAACCTGTGTGTGGCAAGAGTCCATGACACTGCCAGAGCAGACAGGACCAGTGGAGAAGCCACAGTAGCTGCTGCCATCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATGACTGTGCCCTTCCCTaGACAGTTGAGCACACGCAG +
Preference number: 5 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHDCALP*TVEHTQ
Trigger: CTGCGTGTGCTCAACTGTCAAGGGAAGGGCACAGTC...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CCTGACCGTGAAGGAGGTGCTTCCATACACCAGGAATGGGTACCCAGGGTGAGAGGGAACCAGGCCATGTaGATGACGTCTTTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: PDREGGASIHQEWVPRVRGNQAM*MTSLVE
Trigger: CTCTACCAAAGACGTCATCAACATGGCCTGGTTCCC...TCTCACCCTGGGTACCCATTCCTGGTGTATGGAAGCACCTCCTTCACGGTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp GGTATGGCCTTACAGCTGGATCCACCCCTGGAGGTGTGCAGAACTGATCTGCATCCATGCTCCTTGATTTaGCATTCCAGCCCTGGGGCA +
Preference number: 5 (lower is better)
Translates to: GMALQLDPPLEVCRTDLHPCSLI*HSSPGA
Trigger: TGCCCCAGGGCTGGAATGCAAAATCAAGGAGCATGG...ATGCAGATCAGTTCTGCACACCTCCAGGGGTGGATCCAGCTGTAAGGCCATACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp ATGCTCTGGGCGAAGACAAAGGAGTCTTCCTCAATGTACTCCACATaGGGCAACTTCAGGGCCAGGCCCAACAGGTCACTGCTCATCTTC +
Preference number: 5 (lower is better)
Translates to: MLWAKTKESSSMYST*GNFRARPNRSLLIF
Trigger: GAAGATGAGCAGTGACCTGTTGGGCCTGGCCCTGAAGTTGCCCCATGTGGAGTACATTGAGGAAGACTCCTTTGTCTTCGCCCAGAGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp TGGTGCCATGCTGGGATAATTCGCTCCAGGTTCCATGGGATGCTCTaGGCGAAGACAAAGGAGTCTTCCTCAATGTACTCCACATGGGGC +
Preference number: 5 (lower is better)
Translates to: WCHAGIIRSRFHGML*AKTKESSSMYSTWG
Trigger: GCCCCATGTGGAGTACATTGAGGAAGACTCCTTTGTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 90 bp TTCCTCTGTCTGGTGCCATGCTGGGATAATTCGCTCCAGGTTCCATaGGATGCTCTGGGCGAAGACAAAGGAGTCTTCCTCAATGTACTC +
Preference number: 5 (lower is better)
Translates to: FLCLVPCWDNSLQVP*DALGEDKGVFLNVL
Trigger: GAGTACATTGAGGAAGACTCCTTTGTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp CTGCAGCAGATGAGGACATCTGGAAGATATAGGTATGGCCTTACAGCTGGATCCGAGATCCCATGCTCCTaGATTTTGCATTCCAGCCCT +
Preference number: 5 (lower is better)
Translates to: LQQMRTSGRYRYGLTAGSEIPCS*ILHSSP
Trigger: AGGGCTGGAATGCAAAATCAAGGAGCATGGGATCTC...GGATCCAGCTGTAAGGCCATACCTATATCTTCCAGATGTCCTCATCTGCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGCCCCAGGGAGCACATaGCATCCAGTCAGGGTCCAT +
Preference number: 5 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQAPGST*HPVRVH
Trigger: ATGGACCCTGACTGGATGCAATGTGCTCCCTGGGGC...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAATCACCCCCAAATGCATaGAGGGCCTTGCAGACCTGC +
Preference number: 5 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQSPPNA*RALQTC
Trigger: GCAGGTCTGCAAGGCCCTCAATGCATTTGGGGGTGA...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp GTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAGGCAGTGTCATGGACTCTaGCCACACACAGGTTGTCCA +
Preference number: 5 (lower is better)
Translates to: VAFRLNFPVWYLVFEPPRQCHGL*PHTGCP
Trigger: TGGACAACCTGTGTGTGGCAAGAGTCCATGACACTG...CCTTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS-3UTR CAA 90 bp TTGTGGCTTTCAGACTCAATTTTCCAGTCTGGTACTTGGTCTTTGAACCTCCAAATGTTGATGACGTCTTaGGTAGAGAAGTGGATCAGC +
Preference number: 5 (lower is better)
Translates to: LWLSDSIFQSGTWSLNLQMLMTS*VEKWIS
Trigger: GCTGATCCACTTCTCTACCAAAGACGTCATCAACAT...TTGGAGGTTCAAAGACCAAGTACCAGACTGGAAAATTGAGTCTGAAAGCCACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CAA 72 bp ACCACCCCAGTCCTCGCCAGGTGCCGGCAGGCAGCGTaGAGGATGCGGCTATACCCACCGGCCAGGGGCAGC +
Preference number: 6 (lower is better)
Translates to: TTPVLARCRQAA*RMRLYPPARGS
Trigger: GCTGCCCCTGGCCGGTGGGTATAGCCGCATCCTCAACGCTGCCTGCCGGCACCTGGCGAGGACTGGGGTGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp CTTGGAGCAACGGCGGAAGGTGGCGGTGGCCACATGTaGGGCCTCATCAGCCAGGCCATCCTCCTGGGACGG +
Preference number: 6 (lower is better)
Translates to: LGATAEGGGGHM*GLISQAILLGR
Trigger: CCGTCCCAGGAGGATGGCCTGGCTGATGAGGCCGCACATGTGGCCACCGCCACCTTCCGCCGTTGCTCCAAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp GTAGAGGCAGGCGTCGTCCCGGAAGTTCCCAGCTGCTaGAACCAGCACCACCCCAGTCCTCGCCAGGTGCCG +
Preference number: 6 (lower is better)
Translates to: VEAGVVPEVPSC*NQHHPSPRQVP
Trigger: CGGCACCTGGCGAGGACTGGGGTGGTGCTGGTTGCAGCAGCTGGGAACTTCCGGGACGACGCCTGCCTCTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CCAGCCCTGGGGCATGGCAGCAGGAAGCATAGACACTaGCCGCCTGGTGGCCAACGCACTGGCCAGGCTGAC +
Preference number: 6 (lower is better)
Translates to: PALGHGSRKHRH*PPGGQRTGQAD
Trigger: GTCAGCCTGGCCAGTGCGTTGGCCACCAGGCGGCCAGTGTCTATGCTTCCTGCTGCCATGCCCCAGGGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp GGCTGTAGCTGTAGCTGTTCGAGTGGGCCCCGAGTGTaGCGACCACACCGTCCTACAGAGCAGCTGCCCGCC +
Preference number: 6 (lower is better)
Translates to: GCSCSCSSGPRV*RPHRPTEQLPA
Trigger: GGCGGGCAGCTGCTCTGTAGGACGGTGTGGTCGGCACACTCGGGGCCCACTCGAACAGCTACAGCTACAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp TCCCGGCCGCTGACCACACCTGCCAGGTGGGTGCCGTaGCTGTCACACTTGCTCGCCTGTCTGTGGAAGCGT +
Preference number: 6 (lower is better)
Translates to: SRPLTTPARWVP*LSHLLACLWKR
Trigger: ACGCTTCCACAGACAGGCGAGCAAGTGTGACAGCCACGGCACCCACCTGGCAGGTGTGGTCAGCGGCCGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CGTGGCCCCGACTGTGATGACCTCTGGAGCAGAAGCTaGGGAGTAGAGGCAGGCGTCGTCCCGGAAGTTCCC +
Preference number: 6 (lower is better)
Translates to: RGPDCDDLWSRS*GVEAGVVPEVP
Trigger: GGGAACTTCCGGGACGACGCCTGCCTCTACTCCCCAGCTTCTGCTCCAGAGGTCATCACAGTCGGGGCCACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CAA 72 bp CCAGCTCTGGCTGCAGGGGTGTTGTGGATGCTGCAGTaGGCACGGGGAACCAGGCAGCATCTCGCGACGGCA +
Preference number: 6 (lower is better)
Translates to: PALAAGVLWMLQ*ARGTRQHLATA
Trigger: TGCCGTCGCGAGATGCTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACAACACCCCTGCAGCCAGAGCTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp TCTCCAGGCCAGCTCTGGCTGCAGGGGTGTTGTGGATaGTGCAGTTGGCACGGGGAACCAGGCAGCATCTCG +
Preference number: 6 (lower is better)
Translates to: SPGQLWLQGCCG*CSWHGEPGSIS
Trigger: CGAGATGCTGCCTGGTTCCCCGTGCCAACTGCAGCATCCACAACACCCCTGCAGCCAGAGCTGGCCTGGAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CCACAATGTAGGTTCCTGGCAGCCTCCAGGCCTCCTTaGAGCAACGGCGGAAGGTGGCGGTGGCCACATGTG +
Preference number: 6 (lower is better)
Translates to: PQCRFLAASRPP*SNGGRWRWPHV
Trigger: CACATGTGGCCACCGCCACCTTCCGCCGTTGCTCCAAGGAGGCCTGGAGGCTGCCAGGAACCTACATTGTGG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp TGGGTGCCGTGGCTGTCACACTTGCTCGCCTGTCTGTaGAAGCGTGTCCCATCCTCCTCCGGCACGCTGTTG +
Preference number: 6 (lower is better)
Translates to: WVPWLSHLLACL*KRVPSSSGTLL
Trigger: CAACAGCGTGCCGGAGGAGGATGGGACACGCTTCCACAGACAGGCGAGCAAGTGTGACAGCCACGGCACCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CAA 90 bp CTCGCCTGTCTGTGGAAGCGTGTCCCATCCTCCTCCGGCACGCTGTaGAAGTCGGTGATGGTGACCCTGCCCTCAATCTCCCGATGGGCA +
Preference number: 6 (lower is better)
Translates to: LACLWKRVPSSSGTL*KSVMVTLPSISRWA
Trigger: TGCCCATCGGGAGATTGAGGGCAGGGTCACCATCACCGACTTCAACAGCGTGCCGGAGGAGGATGGGACACGCTTCCACAGACAGGCGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp CAGGTTGTCCACGCTGTAGGCTCCCAGAGTGAGGGATaGCCCAGGGAGCACATTGCATCCAGTCAGGGTCCA +
Preference number: 6 (lower is better)
Translates to: QVVHAVGSQSEG*PREHIASSQGP
Trigger: TGGACCCTGACTGGATGCAATGTGCTCCCTGGGGCATCCCTCACTCTGGGAGCCTACAGCGTGGACAACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CAA 72 bp CTGTGGAAGCGTGTCCCATCCTCCTCCGGCACGCTGTaGAAGTCGGTGATGGTGACCCTGCCCTCAATCTCC +
Preference number: 6 (lower is better)
Translates to: LWKRVPSSSGTL*KSVMVTLPSIS
Trigger: GGAGATTGAGGGCAGGGTCACCATCACCGACTTCAACAGCGTGCCGGAGGAGGATGGGACACGCTTCCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp TTGATGACGTCTTTGGTAGAGAAGTGGATCAGCCTCTaGCGCAGCTCGGCCAGGGTAAGTGTGGGCTCCCGG +
Preference number: 6 (lower is better)
Translates to: LMTSLVEKWISL*RSSARVSVGSR
Trigger: CCGGGAGCCCACACTTACCCTGGCCGAGCTGCGGCAGAGGCTGATCCACTTCTCTACCAAAGACGTCATCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp TGGAAGCTGCAGCCTGTGAGAACATGGTCCTTCTGGTaGCAGTGGACATGGGTCTCCAGGCCAGCTCTGGCT +
Preference number: 6 (lower is better)
Translates to: WKLQPVRTWSFW*QWTWVSRPALA
Trigger: AGCCAGAGCTGGCCTGGAGACCCATGTCCACTGCCACCAGAAGGACCATGTTCTCACAGGCTGCAGCTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp CTGCTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTaGCATGCTGGGATAATTCGCTCCAGGTTCCATGGG +
Preference number: 6 (lower is better)
Translates to: LLPSGERSSSVW*HAGIIRSRFHG
Trigger: CCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp CCCTCACCCCCAAATGCATTGAGGGCCTTGCAGACCTaGTGGCCTCCTATGGCCTCAATCCAATCACCACGA +
Preference number: 6 (lower is better)
Translates to: PSPPNALRALQT*WPPMASIQSPR
Trigger: TCGTGGTGATTGGATTGAGGCCATAGGAGGCCAGCAGGTCTGCAAGGCCCTCAATGCATTTGGGGGTGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CCCTGCCCTCAATCTCCCGATGGGCACCCTGGATGCTaGTATCTAAGAGATACACCTCCACCTGGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: PCPQSPDGHPGC*YLRDTPPPGCF
Trigger: GAAGCAGCCAGGTGGAGGTGTATCTCTTAGATACCAGCATCCAGGGTGCCCATCGGGAGATTGAGGGCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp TCACCCCCAAATGCATTGAGGGCCTTGCAGACCTGCTaGCCTCCTATGGCCTCAATCCAATCACCACGACGC +
Preference number: 6 (lower is better)
Translates to: SPPNALRALQTC*PPMASIQSPRR
Trigger: GCGTCGTGGTGATTGGATTGAGGCCATAGGAGGCCAGCAGGTCTGCAAGGCCCTCAATGCATTTGGGGGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CAATGGAAGCTGCAGCCTGTGAGAACATGGTCCTTCTaGTGGCAGTGGACATGGGTCTCCAGGCCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: QWKLQPVRTWSF*WQWTWVSRPAL
Trigger: CAGAGCTGGCCTGGAGACCCATGTCCACTGCCACCAGAAGGACCATGTTCTCACAGGCTGCAGCTTCCATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CAA 72 bp CACTGGTCCTGTCTGCTCTGGCAGTGTCATGGACTCTaGCCACACACAGGTTGTCCACGCTGTAGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: HWSCLLWQCHGL*PHTGCPRCRLP
Trigger: TGGGAGCCTACAGCGTGGACAACCTGTGTGTGGCAAGAGTCCATGACACTGCCAGAGCAGACAGGACCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS TCA 72 bp AGCAGAACCACGAGTGGCCCCGAGGGCTGGATTAGCTaGCTCTTCCGAATAAACTCCAGGCCTATGAGGGTG +
Preference number: 6 (lower is better)
Translates to: SRTTSGPEGWIS*LFRINSRPMRV
Trigger: CACCCTCATAGGCCTGGAGTTTATTCGGAAGAGTCAGCTAATCCAGCCCTCGGGGCCACTCGTGGTTCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp TCCATCAGGGGAGCGGTCTTCCTCTGTCTGGTGCCATaGTGGGATAATTCGCTCCAGGTTCCATGGGATGCT +
Preference number: 6 (lower is better)
Translates to: SIRGAVFLCLVP*WDNSLQVPWDA
Trigger: AGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp ATCAGGGGAGCGGTCTTCCTCTGTCTGGTGCCATGCTaGGATAATTCGCTCCAGGTTCCATGGGATGCTCTG +
Preference number: 6 (lower is better)
Translates to: IRGAVFLCLVPC*DNSLQVPWDAL
Trigger: CAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAGACAGAGGAAGACCGCTCCCCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp ATGGTGACCCTGCCCTCAATCTCCCGATGGGCACCCTaGATGCTGGTATCTAAGAGATACACCTCCACCTGG +
Preference number: 6 (lower is better)
Translates to: MVTLPSISRWAP*MLVSKRYTSTW
Trigger: CCAGGTGGAGGTGTATCTCTTAGATACCAGCATCCAGGGTGCCCATCGGGAGATTGAGGGCAGGGTCACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS GCA 72 bp GGATGCTGGTATCTAAGAGATACACCTCCACCTGGCTaGTTCCATCAGGGGAGCGGTCTTCCTCTGTCTGGT +
Preference number: 6 (lower is better)
Translates to: GCWYLRDTPPPG*FHQGSGLPLSG
Trigger: ACCAGACAGAGGAAGACCGCTCCCCTGATGGAAGCAGCCAGGTGGAGGTGTATCTCTTAGATACCAGCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp GCGAAGACAAAGGAGTCTTCCTCAATGTACTCCACATaGGGCAACTTCAGGGCCAGGCCCAACAGGTCACTG +
Preference number: 6 (lower is better)
Translates to: AKTKESSSMYST*GNFRARPNRSL
Trigger: CAGTGACCTGTTGGGCCTGGCCCTGAAGTTGCCCCATGTGGAGTACATTGAGGAAGACTCCTTTGTCTTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CTGGTGCCATGCTGGGATAATTCGCTCCAGGTTCCATaGGATGCTCTGGGCGAAGACAAAGGAGTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: LVPCWDNSLQVP*DALGEDKGVFL
Trigger: GAGGAAGACTCCTTTGTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGCATGGCACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp AACCAGGCCATGTTGATGACGTCTTTGGTAGAGAAGTaGATCAGCCTCTGCCGCAGCTCGGCCAGGGTAAGT +
Preference number: 6 (lower is better)
Translates to: NQAMLMTSLVEK*ISLCRSSARVS
Trigger: ACTTACCCTGGCCGAGCTGCGGCAGAGGCTGATCCACTTCTCTACCAAAGACGTCATCAACATGGCCTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp CAGCTACTGTGGCTTCTCCACTGGTCCTGTCTGCTCTaGCAGTGTCATGGACTCTTGCCACACACAGGTTGT +
Preference number: 6 (lower is better)
Translates to: QLLWLLHWSCLL*QCHGLLPHTGC
Trigger: ACAACCTGTGTGTGGCAAGAGTCCATGACACTGCCAGAGCAGACAGGACCAGTGGAGAAGCCACAGTAGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6
CDS CCA 72 bp GCTGGGATAATTCGCTCCAGGTTCCATGGGATGCTCTaGGCGAAGACAAAGGAGTCTTCCTCAATGTACTCC +
Preference number: 6 (lower is better)
Translates to: AGIIRSRFHGML*AKTKESSSMYS
Trigger: GGAGTACATTGAGGAAGACTCCTTTGTCTTCGCCCAGAGCATCCCATGGAACCTGGAGCGAATTATCCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049507.6