RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCSK6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030513

Ensembl transcript IDs: ENSMUST00000055576.12, ENSMUST00000098391.11, ENSMUST00000176199.8, ENSMUST00000176209.2

Found 441 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GATGCTGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATaGAGGGCTACCCCAAGGAACAGGCTATGGCTGACCATCTGTAGG +
Preference number: 1 (lower is better)
Translates to: DAAVEPSSGGDTAVR*RATPRNRLWLTICR
Trigger: CCTACAGATGGTCAGCCATAGCCTGTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 90 bp TCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTaGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGAACAG +
Preference number: 1 (lower is better)
Translates to: STCSGAQRCCSRTQL*GRYSCQMQGYPKEQ
Trigger: CTGTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 90 bp ATATCCTTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTaGAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAG +
Preference number: 1 (lower is better)
Translates to: ISLRATSTCSGAQRC*SRTQLWGRYSCQMQ
Trigger: CTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAAGGATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 90 bp CACATATCCTTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATaGTGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATG +
Preference number: 1 (lower is better)
Translates to: HISLRATSTCSGAQR*CSRTQLWGRYSCQM
Trigger: CATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAAGGATATGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 90 bp GGACGTGATGTGACGCCAGGCATCTCGCTTTTTCTGCTTTGGTCTTaGAGTCTCAGTAAACTAGGGTCCCAGAAGCCACTCCGAAGCTGC +
Preference number: 1 (lower is better)
Translates to: GRDVTPGISLFLLWS*SLSKLGSQKPLRSC
Trigger: GCAGCTTCGGAGTGGCTTCTGGGACCCTAGTTTACTGAGACTTCAAGACCAAAGCAGAAAAAGCGAGATGCCTGGCGTCACATCACGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 90 bp ATACTGGACCAGCGCAGCATCCACCCAAGAACAGAGAGTCCCGAGTaGAGAGGCCAAATACACTTGAAAAGCAGTTGTGTGCCATGGAGG +
Preference number: 1 (lower is better)
Translates to: ILDQRSIHPRTESPE*RGQIHLKSSCVPWR
Trigger: CCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATGCTGCGCTGGTCCAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 90 bp TCGCTGAGATTTGTCACGGCCACACAGATATGTGGGAGGAGGACGTaGTGTGACGCCAGGCATCTCGCTTTTTCTGCTTTGGTCTTGAAG +
Preference number: 1 (lower is better)
Translates to: SLRFVTATQICGRRT*CDARHLAFSALVLK
Trigger: CTTCAAGACCAAAGCAGAAAAAGCGAGATGCCTGGCGTCACATCACGTCCTCCTCCCACATATCTGTGTGGCCGTGACAAATCTCAGCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 90 bp TCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTaGAAAGCAGTTGTGTGCCATGGAGGGCTGGCGACTAGTGATTCA +
Preference number: 1 (lower is better)
Translates to: STQEQRVPSAEAKYT*KAVVCHGGLATSDS
Trigger: TGAATCACTAGTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 90 bp GAGATTTGTCACGGCCACACAGATATGTGGGAGGAGGACGTGATGTaGCGCCAGGCATCTCGCTTTTTCTGCTTTGGTCTTGAAGTCTCA +
Preference number: 1 (lower is better)
Translates to: EICHGHTDMWEEDVM*RQASRFFCFGLEVS
Trigger: TGAGACTTCAAGACCAAAGCAGAAAAAGCGAGATGCCTGGCGTCACATCACGTCCTCCTCCCACATATCTGTGTGGCCGTGACAAATCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTaGACCAGCGCAGCATCCACCCAAGAACAGAGAGTCCCGAGTGCA +
Preference number: 1 (lower is better)
Translates to: GRKINPALSCRLVPY*TSAASTQEQRVPSA
Trigger: TGCACTCGGGACTCTCTGTTCTTGGGTGGATGCTGCGCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCGATACAGCTGTCAGATaGAGGGCTACCCCAAGGAAC +
Preference number: 2 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLDTAVR*RATPRN
Trigger: GTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATC...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCACGCTGAAGAGAGGATaGGTGGACCTATTTCGGTTT +
Preference number: 2 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLTLKRG*VDLFRF
Trigger: AAACCGAAATAGGTCCACTCATCCTCTCTTCAGCGT...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTGATACAGCTGTCAGATaGAGGGCTACCCCAAGGAAC +
Preference number: 2 (lower is better)
Translates to: CPSGCLVASDAQGGSEALDTAVR*RATPRN
Trigger: GTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATC...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGGATACAGCTGTCAGATaGAGGGCTACCCCAAGGAAC +
Preference number: 2 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRDTAVR*RATPRN
Trigger: GTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATC...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGCCAAGGAACAGGCTATaGCTGACCATCTGTAGGAAG +
Preference number: 2 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRPRNRL*LTICRK
Trigger: CTTCCTACAGATGGTCAGCCATAGCCTGTTCCTTGG...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTGAGGAGGACGTGATGTaGCGCCAGGCATCTCGCTTT +
Preference number: 2 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSEEDVM*RQASRF
Trigger: AAAGCGAGATGCCTGGCGTCACATCACGTCCTCCTC...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 90 bp AACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTaGTGTGCCATGGAGGGCTGGCGACTAGTGATTCAGGGGCTGGCT +
Preference number: 2 (lower is better)
Translates to: NRESRVQRPNTLEKQ*CAMEGWRLVIQGLA
Trigger: AGCCAGCCCCTGAATCACTAGTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGGTGCTCAGAGATGCTaGAGTAGAACCCAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: LQSERRAGPCGERRGWGNGAQRC*SRTQLW
Trigger: CCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTAGTAGAACCCAGCTCTaGGGGAGATACAGCTGTCAG +
Preference number: 2 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSSRTQL*GRYSCQ
Trigger: CTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACT...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTCAGGTGCTCAGAGATaGTGCAGTAGAACCCAGCTC +
Preference number: 2 (lower is better)
Translates to: DKHITVREESRTMWRETRSGAQR*CSRTQL
Trigger: GAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGA...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGAGTAGAACCCAGCTCTaGGGGAGATACAGCTGTCAG +
Preference number: 2 (lower is better)
Translates to: DKHITVREESRTMWRETRSRTQL*GRYSCQ
Trigger: CTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACT...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCGTCCCTCCGGCTGTTTaGTGGCCAGTGATGCACAGG +
Preference number: 2 (lower is better)
Translates to: GRKINPALSCRLVPYWTSVPPAV*WPVMHR
Trigger: CCTGTGCATCACTGGCCACCAAACAGCCGGAGGGAC...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGTCCCTCCGGCTGTTTaGTGGCCAGTGATGCACAGG +
Preference number: 2 (lower is better)
Translates to: WRETRLGKFKASVIPLAQVPPAV*WPVMHR
Trigger: CCTGTGCATCACTGGCCACCAAACAGCCGGAGGGAC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 90 bp AAACCCATTTTATTTACAGTCCGATCAAACTGTCCCTCCGGCTGTTaGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCAT +
Preference number: 2 (lower is better)
Translates to: KPILFTVRSNCPSGC*VASDAQGGSEALHH
Trigger: ATGATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACAGTTTGATCGGACTGTAAATAAAATGGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGTCAGGTGCTCAGAGATaGTGCAGTAGAACCCAGCTC +
Preference number: 2 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQSGAQR*CSRTQL
Trigger: GAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGA...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGACAGAGAGTCCCGAGTaGAGAGGCCAAATACACTTG +
Preference number: 2 (lower is better)
Translates to: DKHITVREESRTMWRETRTESPE*RGQIHL
Trigger: CAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGT...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTGTCCCTCCGGCTGTTTaGTGGCCAGTGATGCACAGG +
Preference number: 2 (lower is better)
Translates to: MWRETRLGKFKASVIPLAVPPAV*WPVMHR
Trigger: CCTGTGCATCACTGGCCACCAAACAGCCGGAGGGAC...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCTGTGCCATGGAGGGCTaGCGACTAGTGATTCAGGGG +
Preference number: 2 (lower is better)
Translates to: GRKINPALSCRLVPYWTSCAMEG*RLVIQG
Trigger: CCCCTGAATCACTAGTCGCCAGCCCTCCATGGCACA...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 90 bp CACACAGGCTTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTaGTACCATACTGGACCAGCGCAGCATCCACCCAAGAACAGAGAG +
Preference number: 2 (lower is better)
Translates to: HTGLAEKSIQLYHVG*YHTGPAQHPPKNRE
Trigger: CTCTCTGTTCTTGGGTGGATGCTGCGCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAAGCCTGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCTGTTTGGTGGCCAGTaGTGCACAGGGAGGAAGCGA +
Preference number: 2 (lower is better)
Translates to: MWRETRLGKFKASVIPLALFGGQ*CTGRKR
Trigger: TCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCGGTGCTCAGAGATGCTaGAGTAGAACCCAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: VQGDFCQFSHISLRATSTGAQRC*SRTQLW
Trigger: CCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACC...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATTTCAGGGGCTGGCTTTaGATGTTTATGGAACTGCCT +
Preference number: 2 (lower is better)
Translates to: LQSERRAGPCGERRGWGNFRGWL*MFMELP
Trigger: AGGCAGTTCCATAAACATGCAAAGCCAGCCCCTGAA...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGTCAGGTGCTCAGAGATaGTGCAGTAGAACCCAGCTC +
Preference number: 2 (lower is better)
Translates to: WRETRLGKFKASVIPLAQSGAQR*CSRTQL
Trigger: GAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGA...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGTTCAGGGGCTGGCTTTaGATGTTTATGGAACTGCCT +
Preference number: 2 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKFRGWL*MFMELP
Trigger: AGGCAGTTCCATAAACATGCAAAGCCAGCCCCTGAA...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTTCTGCTTTGGTCTTaGAGTCTCAGTAAACTAGGG +
Preference number: 2 (lower is better)
Translates to: DKHITVREESRTMWRETRFLLWS*SLSKLG
Trigger: CCCTAGTTTACTGAGACTTCAAGACCAAAGCAGAAA...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGCCAAGGAACAGGCTATaGCTGACCATCTGTAGGAAG +
Preference number: 2 (lower is better)
Translates to: WRETRLGKFKASVIPLAQPRNRL*LTICRK
Trigger: CTTCCTACAGATGGTCAGCCATAGCCTGTTCCTTGG...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCCATCAGATGTCTTTTaGCTAATCCTAAGTAGCTCC +
Preference number: 2 (lower is better)
Translates to: DKHITVREESRTMWRETRPSDVF*LILSSS
Trigger: GGAGCTACTTAGGATTAGCCAAAAGACATCTGATGG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCACCAAGGAACAGGCTATaGCTGACCATCTGTAGGAAG +
Preference number: 2 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPPRNRL*LTICRK
Trigger: CTTCCTACAGATGGTCAGCCATAGCCTGTTCCTTGG...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTATGCCCACACAGGCTTaGCAGAAAAATCAATCCAGC +
Preference number: 2 (lower is better)
Translates to: MWRETRLGKFKASVIPLAMPTQA*QKNQSS
Trigger: GCTGGATTGATTTTTCTGCCAAGCCTGTGTGGGCAT...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCCCGAAGCTGCAGGTATaGGTCTCACAATTCATTTTT +
Preference number: 2 (lower is better)
Translates to: GRKINPALSCRLVPYWTSPKLQV*VSQFIF
Trigger: AAAAATGAATTGTGAGACTCATACCTGCAGCTTCGG...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCTTTCTGCTTTGGTCTTaGAGTCTCAGTAAACTAGGG +
Preference number: 2 (lower is better)
Translates to: GRKINPALSCRLVPYWTSFLLWS*SLSKLG
Trigger: CCCTAGTTTACTGAGACTTCAAGACCAAAGCAGAAA...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAACGCTGAAGAGAGGATaGGTGGACCTATTTCGGTTT +
Preference number: 2 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPTLKRG*VDLFRF
Trigger: AAACCGAAATAGGTCCACTCATCCTCTCTTCAGCGT...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 90 bp GATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCCTaGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGG +
Preference number: 2 (lower is better)
Translates to: DFLFEVWIQQTTAES*PPTGDKTNTLQSER
Trigger: CCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGGACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR TCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCCGAAGCTGCAGGTATaGGTCTCACAATTCATTTTT +
Preference number: 2 (lower is better)
Translates to: MWRETRLGKFKASVIPLAPKLQV*VSQFIF
Trigger: AAAAATGAATTGTGAGACTCATACCTGCAGCTTCGG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCCATCAGATGTCTTTTaGCTAATCCTAAGTAGCTCC +
Preference number: 2 (lower is better)
Translates to: MWRETRLGKFKASVIPLAPSDVF*LILSSS
Trigger: GGAGCTACTTAGGATTAGCCAAAAGACATCTGATGG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTTCGGAAGGAGCTGACTaGGTAGACATAGATTCTCTC +
Preference number: 2 (lower is better)
Translates to: FASLISYLKCGFNRQQLSSEGAD*VDIDSL
Trigger: GAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGA...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp CCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTaGACAGCTCGGCTCACTCAGAAGAGAACGCTGAAG +
Preference number: 3 (lower is better)
Translates to: PGGPRDTGRTAM*TARLTQKRTLK
Trigger: CTTCAGCGTTCTCTTCTGAGTGAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 72 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATaGAGGGCTACCCCAAGGAACAGGCTATGGCTGACC +
Preference number: 3 (lower is better)
Translates to: VEPSSGGDTAVR*RATPRNRLWLT
Trigger: GGTCAGCCATAGCCTGTTCCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 72 bp AGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTaGAGTAGAACCCAGCTCTGGGGGAGATACAGCTGT +
Preference number: 3 (lower is better)
Translates to: RATSTCSGAQRC*SRTQLWGRYSC
Trigger: ACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp TTACAGTCCGATCAAACTGTCCCTCCGGCTGTTTGGTaGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTC +
Preference number: 3 (lower is better)
Translates to: LQSDQTVPPAVW*PVMHREEARPF
Trigger: GAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACAGTTTGATCGGACTGTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAATGTCCCTCCGGCTGTTaGGTGGCCAGTGATGCACAG +
Preference number: 3 (lower is better)
Translates to: HYSQRGEQDHVERDEVGECPSGC*VASDAQ
Trigger: CTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 72 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATaGTGCAGTAGAACCCAGCTCTGGGGGAGATACAGC +
Preference number: 3 (lower is better)
Translates to: LRATSTCSGAQR*CSRTQLWGRYS
Trigger: GCTGTATCTCCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp TATTTACAGTCCGATCAAACTGTCCCTCCGGCTGTTTaGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCC +
Preference number: 3 (lower is better)
Translates to: YLQSDQTVPPAV*WPVMHREEARP
Trigger: GGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACAGTTTGATCGGACTGTAAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 72 bp GAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTaGAAAGCAGTTGTGTGCCATGGAGGGCTGGCGACT +
Preference number: 3 (lower is better)
Translates to: EQRVPSAEAKYT*KAVVCHGGLAT
Trigger: AGTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 72 bp CAGCGCAGCATCCACCCAAGAACAGAGAGTCCCGAGTaGAGAGGCCAAATACACTTGAAAAGCAGTTGTGTG +
Preference number: 3 (lower is better)
Translates to: QRSIHPRTESPE*RGQIHLKSSCV
Trigger: CACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATGCTGCGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATATTCAGGGGCTGGCTTaGCATGTTTATGGAACTGCC +
Preference number: 3 (lower is better)
Translates to: LQSERRAGPCGERRGWGNIQGLA*HVYGTA
Trigger: GGCAGTTCCATAAACATGCAAAGCCAGCCCCTGAAT...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 72 bp GTGACGCCAGGCATCTCGCTTTTTCTGCTTTGGTCTTaGAGTCTCAGTAAACTAGGGTCCCAGAAGCCACTC +
Preference number: 3 (lower is better)
Translates to: VTPGISLFLLWS*SLSKLGSQKPL
Trigger: GAGTGGCTTCTGGGACCCTAGTTTACTGAGACTTCAAGACCAAAGCAGAAAAAGCGAGATGCCTGGCGTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGAATGCCCACACAGGCTaGGCAGAAAAATCAATCCAG +
Preference number: 3 (lower is better)
Translates to: DKHITVREESRTMWRETRNAHTG*AEKSIQ
Trigger: CTGGATTGATTTTTCTGCCAAGCCTGTGTGGGCATT...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp AATACACTTGAAAAGCAGTTGTGTGCCATGGAGGGCTaGCGACTAGTGATTCAGGGGCTGGCTTTGCATGTT +
Preference number: 3 (lower is better)
Translates to: NTLEKQLCAMEG*RLVIQGLALHV
Trigger: AACATGCAAAGCCAGCCCCTGAATCACTAGTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp ATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTaGACCAGCGCAGCATCCACCCAAGAACAGAGAGTC +
Preference number: 3 (lower is better)
Translates to: INPALSCRLVPY*TSAASTQEQRV
Trigger: GACTCTCTGTTCTTGGGTGGATGCTGCGCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCACACTTGAAAAGCAGTaGTGTGCCATGGAGGGCTGG +
Preference number: 3 (lower is better)
Translates to: GRKINPALSCRLVPYWTSTLEKQ*CAMEGW
Trigger: CCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGT...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGTGGAGAGAGACGAGGTaGGGGAAATTTAAGGCAAGT +
Preference number: 3 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQWRETR*GKFKAS
Trigger: ACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CCA 72 bp GCGACTAGTGATTCAGGGGCTGGCTTTGCATGTTTATaGAACTGCCTGGCCATCAGATGTCTTTTGGCTAAT +
Preference number: 3 (lower is better)
Translates to: ATSDSGAGFACL*NCLAIRCLLAN
Trigger: ATTAGCCAAAAGACATCTGATGGCCAGGCAGTTCCATAAACATGCAAAGCCAGCCCCTGAATCACTAGTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR GCA 72 bp CTCAGTAAACTAGGGTCCCAGAAGCCACTCCGAAGCTaGAGGTATGAGTCTCACAATTCATTTTTGTTCCTG +
Preference number: 3 (lower is better)
Translates to: LSKLGSQKPLRS*RYESHNSFLFL
Trigger: CAGGAACAAAAATGAATTGTGAGACTCATACCTGCAGCTTCGGAGTGGCTTCTGGGACCCTAGTTTACTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR TCA 72 bp ACTAGGGTCCCAGAAGCCACTCCGAAGCTGCAGGTATaGGTCTCACAATTCATTTTTGTTCCTGTTTTGAGT +
Preference number: 3 (lower is better)
Translates to: TRVPEATPKLQV*VSQFIFVPVLS
Trigger: ACTCAAAACAGGAACAAAAATGAATTGTGAGACTCATACCTGCAGCTTCGGAGTGGCTTCTGGGACCCTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR-3UTR CAA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTACTGAGCAAGCGGATTaGCGCATTTCAATGAAAATA +
Preference number: 3 (lower is better)
Translates to: MWRETRLGKFKASVIPLATEQAD*RISMKI
Trigger: TATTTTCATTGAAATGCGCAAATCCGCTTGCTCAGT...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCCAGTGTGGCCGTCGGTaGAGCGCTGACGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLQCGRR*SADADL
Trigger: CAGATCTGCGTCAGCGCTGCACCGACGGCCACACTG...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCACTGTGCTGGGCTCCTaGCCGTGCACGTCTCACATC +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLTVLGS*PCTSHI
Trigger: GATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGT...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCGCACTGCCCAGTGGTTaGTGTAGACGGGGCGCGGCG +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPALPSG*CRRGAA
Trigger: CGCCGCGCCCCGTCTACACCAACCACTGGGCAGTGC...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCCCATCACAGGAGCAGTaGTCCCCTTCTCTCCCACCA +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLPSQEQ*SPSLPP
Trigger: TGGTGGGAGAGAAGGGGACCACTGCTCCTGTGATGG...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTGTTGTCCAGCAGCCTTaGGAGGCTCCTGCTCCGGGA +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALVVQQP*EAPAPG
Trigger: TCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAAC...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGTCATCCACGCACTTCTaGCAGCTCGGGTGGCACCTG +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRSSTHF*QLGWHL
Trigger: CAGGTGCCACCCGAGCTGTCAGAAGTGCGTGGATGA...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGTACACTCTTCTCTGCTaGGCCCCACACAGGTCCGGC +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRYTLLC*APHRSG
Trigger: GCCGGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTA...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCCAATCTGGCCCAAGTTaGGGTAGCCGTGCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPQSGPS*GSRAPQ
Trigger: CTGCGGCGCACGGCTACCTCAACTTGGGCCAGATTG...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR TCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCCAATGTAGTTGGGTCTaGTGCCCAGAGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLQCSWV*CPETWP
Trigger: AGGCCAAGTCTCTGGGCATCAGACCCAACTACATTG...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCCTAGAGCCAAGGCAATaGTACCAGCCACCATGGGGG +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFILEPRQ*YQPPWG
Trigger: CCCCCATGGTGGCTGGTATCATTGCCTTGGCTCTAG...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTATCCGTGAGCGAGACTaGTGGGAGCTGAAGGTGCGA +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALIRERD*WELKVR
Trigger: TCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGAT...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGCAGTGTGGCCGTCGGTaGAGCGCTGACGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRQCGRR*SADADL
Trigger: CAGATCTGCGTCAGCGCTGCACCGACGGCCACACTG...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCGTTCACAGTCCGGAATaGAGCTGCCCCGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPVHSPE*SCPVPG
Trigger: GCCTGGCACGGGGCAGCTGCATTCCGGACTGTGAAC...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCATTCTGAGGAAGGTGTaGGGGCCCCTGCTGCTCAAG +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFIILRKV*GPLLLK
Trigger: CTTGAGCAGCAGGGGCCCCCACACCTTCCTCAGAAT...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCCTATGGGGATGCTCCTaGGCCTTTTGTCTGCGGTGG +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFILWGCS*AFCLRW
Trigger: CCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAG...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCGAGGGAGAAATCAGGTaGATCTGGAGATCGCCCCGG +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFIEGEIR*IWRSPR
Trigger: CCGGGGCGATCTCCAGATCCACCTGATTTCTCCCTC...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCTCTTCCTCGTCTTCTaGAGTCTCTGCCTGGGGTGG +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALLFLVF*SLCLGW
Trigger: CCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAG...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGAGACAGGCACTGTGCTaGGCTCCTGCCCGTGCACGT +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGRQALC*APARAR
Trigger: ACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCT...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCGCATTGCTGCACGTGTaGTTGGTGATGCAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLALLHV*LVMQEV
Trigger: AACCTCCTGCATCACCAACCACACGTGCAGCAATGC...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCGTGCGGCAGCAAAACTaGATGAAGAGCTTCCGTTCG +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLVRQQN*MKSFRS
Trigger: CGAACGGAAGCTCTTCATCCAGTTTTGCTGCCGCAC...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGTCATCCACGCACTTCTaGCAGCTCGGGTGGCACCTG +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRSSTHF*QLGWHL
Trigger: CAGGTGCCACCCGAGCTGTCAGAAGTGCGTGGATGA...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTTTCACCAGCAGGTGCTaGACATCCCTCCAGGTCAAC +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALFTSRC*TSLQVN
Trigger: GTTGACCTGGAGGGATGTGCAGCACCTGCTGGTGAA...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCTGCGATGGTATATCCTaGACTTCCAGAGTCCACTCC +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLCDGIS*TSRVHS
Trigger: GGAGTGGACTCTGGAAGTGCAGGATATACCATCGCA...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAGCACTGCCCAGTGGTTaGTGTAGACGGGGCGCGGCG +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEALPSG*CRRGAA
Trigger: CGCCGCGCCCCGTCTACACCAACCACTGGGCAGTGC...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGGTAGCACCTGCACTATaGGGATGCTCCTGGGCCTTT +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRVAPAL*GCSWAF
Trigger: AAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTAC...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCTCTGGAGTCTCTGCCTaGGGTGGTTGTCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPSGVSA*GGCPAA
Trigger: GGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGA...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGTACACTCTTCTCTGCTaGGCCCCACACAGGTCCGGC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGYTLLC*APHRSG
Trigger: GCCGGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTA...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCTGGACGTTCATCTCTaGCCGACAGCGACTGTTCTT +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALLDVHL*PTATVL
Trigger: AAGAACAGTCGCTGTCGGTCAGAGATGAACGTCCAG...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCCAATGTAGTTGGGTCTaGTGCCCAGAGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFIQCSWV*CPETWP
Trigger: AGGCCAAGTCTCTGGGCATCAGACCCAACTACATTG...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGTATGCCCAGCTCCGTTaGCTTTCCAGTCGCTCGCCT +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRYAQLR*LSSRSP
Trigger: AGGCGAGCGACTGGAAAGTCAACGGAGCTGGGCATA...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR TCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGATCCGTGAGCGAGACTaGTGGGAGCTGAAGGTGCGA +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRIRERD*WELKVR
Trigger: TCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGAT...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGGTCTTCACCAGCAGGTaGTGCACATCCCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGVFTSR*CTSLQV
Trigger: GACCTGGAGGGATGTGCAGCACCTGCTGGTGAAGAC...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGGTGGTCCGTAGCACCTaGACTATGGGGATGCTCCTG +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGVVRST*TMGMLL
Trigger: CAGGAGCATCCCCATAGTGCAGGTGCTACGGACCAC...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGTTTAGCCAGCCGGCCTaGTCCATCTACTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRFSQPA*SIYCLS
Trigger: GGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAA...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCACACAGTTCAAGCACTaGTCTGCATTGGGACCATCA +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLTQFKH*SALGPS
Trigger: TGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGT...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGCTTCGACACACTTTGTaGGGTAAGCCAGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRLRHTL*GKPGIS
Trigger: GGAGATGCCTGGCTTACCCCACAAAGTGTGTCGAAG...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGGCCCCGGCGTGGGTGTaGGATAGAGATTCGGACAAC +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQAPAWV*DRDSDN
Trigger: GTTGTCCGAATCTCTATCTCACACCCACGCCGGGGC...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCCGGTGCCATATAAAATaGGGCTCCATTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLRCHIK*GSILSA
Trigger: AGCTGAAAGAATGGAGCCTCATTTTATATGGCACCG...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGGGGCCGCCCAGCACTTaGACTGCCCAGTGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRGPPST*TAQWLV
Trigger: CACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCC...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGGGCCGCCCAGCACTTaGACTGCCCAGTGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNGPPST*TAQWLV
Trigger: CACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCTTGCATTATATGCGATaGCCACGATGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLLHYMR*PRCSRS
Trigger: ACTCCTACTGCATCGTGGGCATCGCATATAATGCAA...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCGTTCTCAGTGGTGCTaGTTACGGAGATGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALRSQWC*LRRWCR
Trigger: TCTACACCATCTCCGTAAGCAGCACCACTGAGAACG...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGACTGTGCTGGGCTCCTaGCCGTGCACGTCTCACATC +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQTVLGS*PCTSHI
Trigger: GATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGT...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAGTTCACAGTCCGGAATaGAGCTGCCCCGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEVHSPE*SCPVPG
Trigger: GCCTGGCACGGGGCAGCTGCATTCCGGACTGTGAAC...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGGTTGGGGGCCAGGTCTaGGTGATTCCTTTCTATGCC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGVGGQV*VIPFYA
Trigger: GGCATAGAAAGGAATCACCCAGACCTGGCCCCCAAC...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGCTGGACGTTCATCTCTaGCCGACAGCGACTGTTCTT +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRLDVHL*PTATVL
Trigger: AAGAACAGTCGCTGTCGGTCAGAGATGAACGTCCAG...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGCAATGTAGTTGGGTCTaGTGCCCAGAGACTTGGCCT +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRQCSWV*CPETWP
Trigger: AGGCCAAGTCTCTGGGCATCAGACCCAACTACATTG...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCGTCCAGCATCCGGATaGCTCCTATCTTTGCATTAT +
Preference number: 4 (lower is better)
Translates to: CPSGCLVASDAQGGSEALRPASG*LLSLHY
Trigger: ATAATGCAAAGATAGGAGGCATCCGGATGCTGGACG...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCAGTGTGGCCGTCGGTaGAGCGCTGACGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRQCGRR*SADADL
Trigger: CAGATCTGCGTCAGCGCTGCACCGACGGCCACACTG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGCAGGACCAGAGCTTCTaGATCCACCAAGCCAAATCC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGQDQSF*IHQAKS
Trigger: GGATTTGGCTTGGTGGATGCAGAAGCTCTGGTCCTG...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAACCTGGGCCTTTTGTCTaGGGTGGCCACGCATACGTG +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEPGPFV*GGHAYV
Trigger: CACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGG...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGATTCGGACAACCACATaGTCCAGGTACACCACACGC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGIRTTT*SRYTTR
Trigger: GCGTGTGGTGTACCTGGAGCATGTGGTTGTCCGAAT...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGGTCTTCTGGAGTCTCTaGCTGGGGTGGTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQVFWSL*LGWLSS
Trigger: GCTGGACAACCACCCCAGGCAGAGACTCCAGAAGAC...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGCATAGGAATCGTAGTTaGGGGCCAGGTCTGGGTGAT +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGHRNRS*GPGLGD
Trigger: ATCACCCAGACCTGGCCCCCAACTACGATTCCTATG...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCTTCCCCAGGCTGAAGTaGACACAGTTCAAGCACTGG +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPFPRLK*TQFKHW
Trigger: CCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAA...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATAGACAGGCACTGTGCTaGGCTCCTGCCCGTGCACGT +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNRQALC*APARAR
Trigger: ACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCT...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGGCATTGCTGCACGTGTaGTTGGTGATGCAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRALLHV*LVMQEV
Trigger: AACCTCCTGCATCACCAACCACACGTGCAGCAATGC...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGAGCTCCAGCATCCGTaGGCGAGACTGATGGGAGCT +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNELQHP*ARLMGA
Trigger: AGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCTTCACTTCCTGTTGTTaGAGCCATTTTACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFIFTSCC*SHFTCG
Trigger: CCCACAGGTAAAATGGCTGCAACAACAGGAAGTGAA...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAGTCTTCACCAGCAGGTaGTGCACATCCCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEVFTSR*CTSLQV
Trigger: GACCTGGAGGGATGTGCAGCACCTGCTGGTGAAGAC...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATACTGTGCTGGGCTCCTaGCCGTGCACGTCTCACATC +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNTVLGS*PCTSHI
Trigger: GATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGT...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTATTCTGAGGAAGGTGTaGGGGCCCCTGCTGCTCAAG +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSILRKV*GPLLLK
Trigger: CTTGAGCAGCAGGGGCCCCCACACCTTCCTCAGAAT...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCGTCATATCTCGGGGATaGGTCATAATCATTTCCATT +
Preference number: 4 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLVISRG*VIIISI
Trigger: AATGGAAATGATTATGACCCATCCCCGAGATATGAC...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAACCATCACAGGAGCAGTaGTCCCCTTCTCTCCCACCA +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEPSQEQ*SPSLPP
Trigger: TGGTGGGAGAGAAGGGGACCACTGCTCCTGTGATGG...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGTCCCTCCAGGTCAACTaGTTGTTTGCTTCTAGAGCC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGSLQVN*LFASRA
Trigger: GGCTCTAGAAGCAAACAACCAGTTGACCTGGAGGGA...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
3UTR CAA 72 bp TTATTTACAGTCCGATCAAACTGTCCCTCCGGCTGTTaGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCC +
Preference number: 4 (lower is better)
Translates to: LFTVRSNCPSGC*VASDAQGGSEA
Trigger: GGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACAGTTTGATCGGACTGTAAATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAATTCGCGCCTGTCTCTTaGCTCTGCGCTTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEFAPVS*LCASLP
Trigger: AGGAAGTGAAGCGCAGAGTCAAGAGACAGGCGCGAA...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGGCCCCGGCGTGGGTGTaGGATAGAGATTCGGACAAC +
Preference number: 4 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQAPAWV*DRDSDN
Trigger: GTTGTCCGAATCTCTATCTCACACCCACGCCGGGGC...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATCAGGTCCGGCAGGTGTaGTGGCATTCCCCACATTTG +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNQVRQV*WHSPHL
Trigger: CAAATGTGGGGAATGCCATCACACCTGCCGGACCTG...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGCCTGGGCCTTTTGTCTaGGGTGGCCACGCATACGTG +
Preference number: 4 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQPGPFV*GGHAYV
Trigger: CACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGG...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTGAATACACTCTTCTCTaGTGGGCCCCACACAGGTCC +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSEYTLL*WAPHRS
Trigger: GGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTATTC...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAGAATACACTCTTCTCTaGTGGGCCCCACACAGGTCC +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEEYTLL*WAPHRS
Trigger: GGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTATTC...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTAGGTACCAGGGTTTGTaGCCGTTCTCAGTGGTGCTG +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSRYQGL*PFSVVL
Trigger: CAGCACCACTGAGAACGGCCACAAACCCTGGTACCT...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTA +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRRWSGL*SVAPAL
Trigger: TAGTGCAGGTGCTACGGACCACAGCCCTGACCAACG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGTCTGGAGTCTCTGCCTaGGGTGGTTGTCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKSGVSA*GGCPAA
Trigger: GGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGA...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGGTATTAGGAGAGCCTTaGATGGAAGGAGCTGTGTAC +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRVLGEP*MEGAVY
Trigger: GTACACAGCTCCTTCCATCCAAGGCTCTCCTAATAC...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCGTATTAGGAGAGCCTTaGATGGAAGGAGCTGTGTAC +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPVLGEP*MEGAVY
Trigger: GTACACAGCTCCTTCCATCCAAGGCTCTCCTAATAC...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGGTTCGCAGAGCCGATTaGACTTCACCATCTCGCAGA +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQVRRAD*TSPSRR
Trigger: TCTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAAC...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 72 bp AGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTaGAAAAGCAGTTGTGTGCCATGGAGGGCTGGCGAC +
Preference number: 4 (lower is better)
Translates to: RTESPECRGQIH*KSSCVPWRAGD
Trigger: GTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGTATGCCCAGCTCCGTTaGCTTTCCAGTCGCTCGCCT +
Preference number: 4 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQYAQLR*LSSRSP
Trigger: AGGCGAGCGACTGGAAAGTCAACGGAGCTGGGCATA...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCTTGCATTATATGCGATaGCCACGATGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPLHYMR*PRCSRS
Trigger: ACTCCTACTGCATCGTGGGCATCGCATATAATGCAA...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCGTTCTCAGTGGTGCTaGTTACGGAGATGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQRSQWC*LRRWCR
Trigger: TCTACACCATCTCCGTAAGCAGCACCACTGAGAACG...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGCAGCGTCTTGCAGCTaGATCCCCAAAGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNAASCS*IPKVAQ
Trigger: TTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGAATGCAGCTGCCCCGTaGCAGGCTGAATCCCTCCTT +
Preference number: 4 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQNAAAP*QAESLL
Trigger: AAGGAGGGATTCAGCCTGGCACGGGGCAGCTGCATT...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTCGGCTTTACATCTGCTaGAGTTCCTACTGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSRLYIC*SSYWSP
Trigger: AGGGCTCCAGTAGGAACTGCAGCAGATGTAAAGCCG...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCGTCATATCTCGGGGATaGGTCATAATCATTTCCATT +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFIVISRG*VIIISI
Trigger: AATGGAAATGATTATGACCCATCCCCGAGATATGAC...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAATTTAGCCAGCCGGCCTaGTCCATCTACTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEFSQPA*SIYCLS
Trigger: GGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAA...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTA +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKRWSGL*SVAPAL
Trigger: TAGTGCAGGTGCTACGGACCACAGCCCTGACCAACG...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTA +
Preference number: 4 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQRWSGL*SVAPAL
Trigger: TAGTGCAGGTGCTACGGACCACAGCCCTGACCAACG...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGGAGGGAGAAATCAGGTaGATCTGGAGATCGCCCCGG +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKEGEIR*IWRSPR
Trigger: CCGGGGCGATCTCCAGATCCACCTGATTTCTCCCTC...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGTTGTCCAGCAGCCTTaGGAGGCTCCTGCTCCGGGA +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQVVQQP*EAPAPG
Trigger: TCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAAC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCGTTGTCCAGCAGCCTTaGGAGGCTCCTGCTCCGGGA +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSVVQQP*EAPAPG
Trigger: TCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAAC...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCTCTTCCTCGTCTTCTaGAGTCTCTGCCTGGGGTGG +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKLFLVF*SLCLGW
Trigger: CCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAG...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTTTCCCCAGGCTGAAGTaGACACAGTTCAAGCACTGG +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSFPRLK*TQFKHW
Trigger: CCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAA...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 72 bp TCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTaGTGTGCCATGGAGGGCTGGCGACTAGTGATTCAG +
Preference number: 4 (lower is better)
Translates to: SRVQRPNTLEKQ*CAMEGWRLVIQ
Trigger: CTGAATCACTAGTCGCCAGCCCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTCAATCTGGCCCAAGTTaGGGTAGCCGTGCGCCGCAG +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFQSGPS*GSRAPQ
Trigger: CTGCGGCGCACGGCTACCTCAACTTGGGCCAGATTG...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR TCA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCACCAAATGGGATCATTaGAATAAAGAGAGTCACTTC +
Preference number: 4 (lower is better)
Translates to: PPAVWWPVMHREEARPFITKWDH*NKESHF
Trigger: GAAGTGACTCTCTTTATTTCAATGATCCCATTTGGT...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGACCAAATGGGATCATTaGAATAAAGAGAGTCACTTC +
Preference number: 4 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRTKWDH*NKESHF
Trigger: GAAGTGACTCTCTTTATTTCAATGATCCCATTTGGT...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGCCCCGGCGTGGGTGTaGGATAGAGATTCGGACAAC +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQAPAWV*DRDSDN
Trigger: GTTGTCCGAATCTCTATCTCACACCCACGCCGGGGC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTTTGCCAAAAGTTaGGACTTGGTTCCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQLFAKS*DLVPEG
Trigger: TCCCTCTGGAACCAAGTCTCAACTTTTGGCAAAGAG...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGGGCCGTTCTCAGTGGTaGTGCTTACGGAGATGGTGT +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKGRSQW*CLRRWC
Trigger: ACACCATCTCCGTAAGCAGCACCACTGAGAACGGCC...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGATTCGGACAACCACATaGTCCAGGTACACCACACGC +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRIRTTT*SRYTTR
Trigger: GCGTGTGGTGTACCTGGAGCATGTGGTTGTCCGAAT...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATATTCGGACAACCACATaGTCCAGGTACACCACACGC +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNIRTTT*SRYTTR
Trigger: GCGTGTGGTGTACCTGGAGCATGTGGTTGTCCGAAT...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTCCTGCACTATGGGGATaGTCTTTGCTTCTAGAGCCA +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSPALWG*SLLLEP
Trigger: TGGCTCTAGAAGCAAAGAGCATCCCCATAGTGCAGG...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATAGGCCCAAACAAAAATaGAGCCCAGACCTTGGCGAC +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNRPKQK*SPDLGD
Trigger: GTCGCCAAGGTCTGGGCTCCATTTTTGTTTGGGCCT...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCTTCGACACACTTTGTaGGGTAAGCCAGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRLRHTL*GKPGIS
Trigger: GGAGATGCCTGGCTTACCCCACAAAGTGTGTCGAAG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGTTCGCAGAGCCGATTaGACTTCACCATCTCGCAGA +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNVRRAD*TSPSRR
Trigger: TCTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAAC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATTCACCACACTCGGGATaGCACACACCTGTGTACTCT +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNSPHSG*HTPVYS
Trigger: AGAGTACACAGGTGTGTGCCATCCCGAGTGTGGTGA...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS-3UTR TCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCCTAGAGCCAAGGCAATaGTACCAGCCACCATGGGGG +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSLEPRQ*YQPPWG
Trigger: CCCCCATGGTGGCTGGTATCATTGCCTTGGCTCTAG...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAACTCTTTGCCAAAAGTTaGGACTTGGTTCCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGELFAKS*DLVPEG
Trigger: TCCCTCTGGAACCAAGTCTCAACTTTTGGCAAAGAG...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCATCCGTGAGCGAGACTaGTGGGAGCTGAAGGTGCGA +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTIRERD*WELKVR
Trigger: TCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGAT...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGAGCTCCAGCATCCGTaGGCGAGACTGATGGGAGCT +
Preference number: 4 (lower is better)
Translates to: TMWRETRLGKFKASVIPLELQHP*ARLMGA
Trigger: AGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTC...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGATCCAGCAATCTCTTTaGCAAAAGTTGAGACTTGGT +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGIQQSL*QKLRLG
Trigger: ACCAAGTCTCAACTTTTGGCAAAGAGATTGCTGGAT...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGATCCAGCAATCTCTTTaGCAAAAGTTGAGACTTGGT +
Preference number: 4 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRIQQSL*QKLRLG
Trigger: ACCAAGTCTCAACTTTTGGCAAAGAGATTGCTGGAT...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp AGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTTGTGTGCCATGGAGGTGCGATGGTATATCCTaGACTTCCAGAGTCCACTCC +
Preference number: 4 (lower is better)
Translates to: SPECRGQIHLKSSCVPWRCDGIS*TSRVHS
Trigger: GGAGTGGACTCTGGAAGTGCAGGATATACCATCGCA...CCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGTCTTCTGGAGTCTCTaGCTGGGGTGGTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQVFWSL*LGWLSS
Trigger: GCTGGACAACCACCCCAGGCAGAGACTCCAGAAGAC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAACCTCCTTACACACAGTaGACTTCTCAGGTTCATCCA +
Preference number: 4 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEPPYTQ*TSQVHP
Trigger: TGGATGAACCTGAGAAGTGCACTGTGTGTAAGGAGG...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCAATGCAGCTGCCCCGTaGCAGGCTGAATCCCTCCTT +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTNAAAP*QAESLL
Trigger: AAGGAGGGATTCAGCCTGGCACGGGGCAGCTGCATT...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGAGGCCCAAACAAAAATaGAGCCCAGACCTTGGCGAC +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKRPKQK*SPDLGD
Trigger: GTCGCCAAGGTCTGGGCTCCATTTTTGTTTGGGCCT...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCCCATCACAGGAGCAGTaGTCCCCTTCTCTCCCACCA +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSPSQEQ*SPSLPP
Trigger: TGGTGGGAGAGAAGGGGACCACTGCTCCTGTGATGG...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTCCCTCCAGGTCAACTaGTTGTTTGCTTCTAGAGCC +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRSLQVN*LFASRA
Trigger: GGCTCTAGAAGCAAACAACCAGTTGACCTGGAGGGA...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCCTATGGGGATGCTCCTaGGCCTTTTGTCTGCGGTGG +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTLWGCS*AFCLRW
Trigger: CCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAG...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTTCTGGAGTCTCTGCCTaGGGTGGTTGTCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFSGVSA*GGCPAA
Trigger: GGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGA...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATTCACCACACTCGGGATaGCACACACTGGTCTGTAAA +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNSPHSG*HTLVCK
Trigger: TTTACAGACCAGTGTGTGCCATCCCGAGTGTGGTGA...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAAGACAGGCACTGTGCTaGGCTCCTGCCCGTGCACGT +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPRQALC*APARAR
Trigger: ACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCT...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGGTGCGGCAGCAAAACTaGATGAAGAGCTTCCGTTCG +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKVRQQN*MKSFRS
Trigger: CGAACGGAAGCTCTTCATCCAGTTTTGCTGCCGCAC...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCTCTTTGCCAAAAGTTaGGACTTGGTTCCAGAGGGA +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRLFAKS*DLVPEG
Trigger: TCCCTCTGGAACCAAGTCTCAACTTTTGGCAAAGAG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCTCATCCACGCACTTCTaGCAGCTCGGGTGGCACCTG +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFSSTHF*QLGWHL
Trigger: CAGGTGCCACCCGAGCTGTCAGAAGTGCGTGGATGA...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGTCCGGCAGGTGTaGTGGCATTCCCCACATTTG +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLAQVRQV*WHSPHL
Trigger: CAAATGTGGGGAATGCCATCACACCTGCCGGACCTG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCAGGTTCCCAGCTGTGTaGAGCCGGCTTTACATCTGC +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTRFPAV*SRLYIC
Trigger: GCAGATGTAAAGCCGGCTTCACACAGCTGGGAACCT...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGATGCGATGCCCACGATaGAGTAGGAGTTGTTGGCCG +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQMRCPR*SRSCWP
Trigger: CGGCCAACAACTCCTACTGCATCGTGGGCATCGCAT...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTGTGGTCCGTAGCACCTaGACTATGGGGATGCTCCTG +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLAVVRST*TMGMLL
Trigger: CAGGAGCATCCCCATAGTGCAGGTGCTACGGACCAC...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTAATGCAGCTGCCCCGTaGCAGGCTGAATCCCTCCTT +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFNAAAP*QAESLL
Trigger: AAGGAGGGATTCAGCCTGGCACGGGGCAGCTGCATT...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCGAATACACTCTTCTCTaGTGGGCCCCACACAGGTCC +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSEYTLL*WAPHRS
Trigger: GGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTATTC...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGTTGGGGGCCAGGTCTaGGTGATTCCTTTCTATGCC +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQVGGQV*VIPFYA
Trigger: GGCATAGAAAGGAATCACCCAGACCTGGCCCCCAAC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTGAGGGAGAAATCAGGTaGATCTGGAGATCGCCCCGG +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFEGEIR*IWRSPR
Trigger: CCGGGGCGATCTCCAGATCCACCTGATTTCTCCCTC...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCATACACTCTTCTCTGCTaGGCCCCACACAGGTCCGGC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPYTLLC*APHRSG
Trigger: GCCGGACCTGTGTGGGGCCCAGCAGAGAAGAGTGTA...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCCAGGTCCGGCAGGTGTaGTGGCATTCCCCACATTTG +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFQVRQV*WHSPHL
Trigger: CAAATGTGGGGAATGCCATCACACCTGCCGGACCTG...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCGGCAGCAAAACTGGATaGAGAGCTTCCGTTCGCAGA +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTGSKTG*RASVRR
Trigger: TCTGCGAACGGAAGCTCTTCATCCAGTTTTGCTGCC...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCGGCAGCAAAACTGGATaGAGAGCTTCCGTTCGCAGA +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSGSKTG*RASVRR
Trigger: TCTGCGAACGGAAGCTCTTCATCCAGTTTTGCTGCC...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp AGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTTGTGTGCCATGGAGGTTCACTTCCTGTTGTTaGAGCCATTTTACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: SPECRGQIHLKSSCVPWRFTSCC*SHFTCG
Trigger: CCCACAGGTAAAATGGCTGCAACAACAGGAAGTGAA...CCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGGGGGTTCTTATCAGTACAATaGATGTACCACATGTTAGAC +
Preference number: 4 (lower is better)
Translates to: TSTCSGAQRCCSRTQLWGFLSVQ*MYHMLD
Trigger: GTCTAACATGTGGTACATGCATTGTACTGATAAGAA...CCCCCAGAGCTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTATGCGATGCCCACGATaGAGTAGGAGTTGTTGGCCG +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFMRCPR*SRSCWP
Trigger: CGGCCAACAACTCCTACTGCATCGTGGGCATCGCAT...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAATGCGATGCCCACGATaGAGTAGGAGTTGTTGGCCG +
Preference number: 4 (lower is better)
Translates to: TMWRETRLGKFKASVIPLMRCPR*SRSCWP
Trigger: CGGCCAACAACTCCTACTGCATCGTGGGCATCGCAT...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATTTGCATTATATGCGATaGCCACGATGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNLHYMR*PRCSRS
Trigger: ACTCCTACTGCATCGTGGGCATCGCATATAATGCAA...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTGGCCGTTCTCAGTGGTaGTGCTTACGGAGATGGTGT +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLAGRSQW*CLRRWC
Trigger: ACACCATCTCCGTAAGCAGCACCACTGAGAACGGCC...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGGCCGTTCTCAGTGGTaGTGCTTACGGAGATGGTGT +
Preference number: 4 (lower is better)
Translates to: TMWRETRLGKFKASVIPLGRSQW*CLRRWC
Trigger: ACACCATCTCCGTAAGCAGCACCACTGAGAACGGCC...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTTTCACCAGCAGGTGCTaGACATCCCTCCAGGTCAAC +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFFTSRC*TSLQVN
Trigger: GTTGACCTGGAGGGATGTGCAGCACCTGCTGGTGAA...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCCAGGACCAGAGCTTCTaGATCCACCAAGCCAAATCC +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTQDQSF*IHQAKS
Trigger: GGATTTGGCTTGGTGGATGCAGAAGCTCTGGTCCTG...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR GCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCGTCTTCTGGAGTCTCTaGCTGGGGTGGTTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFVFWSL*LGWLSS
Trigger: GCTGGACAACCACCCCAGGCAGAGACTCCAGAAGAC...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCCGGCTTTACATCTGCTaGAGTTCCTACTGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTRLYIC*SSYWSP
Trigger: AGGGCTCCAGTAGGAACTGCAGCAGATGTAAAGCCG...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAATTCTGAGGAAGGTGTaGGGGCCCCTGCTGCTCAAG +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPILRKV*GPLLLK
Trigger: CTTGAGCAGCAGGGGCCCCCACACCTTCCTCAGAAT...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTGTTGGGGGCCAGGTCTaGGTGATTCCTTTCTATGCC +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFVGGQV*VIPFYA
Trigger: GGCATAGAAAGGAATCACCCAGACCTGGCCCCCAAC...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTGTAGCACCTGCACTATaGGGATGCTCCTGGGCCTTT +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFVAPAL*GCSWAF
Trigger: AAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTAC...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCTTCCCCAGGCTGAAGTaGACACAGTTCAAGCACTGG +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTFPRLK*TQFKHW
Trigger: CCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAA...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCGCATTGCTGCACGTGTaGTTGGTGATGCAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTALLHV*LVMQEV
Trigger: AACCTCCTGCATCACCAACCACACGTGCAGCAATGC...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCGTGCGGCAGCAAAACTaGATGAAGAGCTTCCGTTCG +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTVRQQN*MKSFRS
Trigger: CGAACGGAAGCTCTTCATCCAGTTTTGCTGCCGCAC...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGGTAGCACCTGCACTATaGGGATGCTCTTTGCTTCTA +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKVAPAL*GCSLLL
Trigger: TAGAAGCAAAGAGCATCCCCATAGTGCAGGTGCTAC...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
3UTR CAA 72 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTaGTACCATACTGGACCAGCGCAGCATCCACCCAAG +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVG*YHTGPAQHPPK
Trigger: CTTGGGTGGATGCTGCGCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCTTCGCGCCTGTCTCTTaGCTCTGCGCTTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFFAPVS*LCASLP
Trigger: AGGAAGTGAAGCGCAGAGTCAAGAGACAGGCGCGAA...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCTGGACGTTCATCTCTaGCCGACAGCGACTGTTCTT +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLALDVHL*PTATVL
Trigger: AAGAACAGTCGCTGTCGGTCAGAGATGAACGTCCAG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAAGGTTCCCAGCTGTGTaGAGCCGGCTTTACATCTGC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPRFPAV*SRLYIC
Trigger: GCAGATGTAAAGCCGGCTTCACACAGCTGGGAACCT...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTGGCAGCAAAACTGGATaGAGAGCTTCCGTTCGCAGA +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFGSKTG*RASVRR
Trigger: TCTGCGAACGGAAGCTCTTCATCCAGTTTTGCTGCC...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCAGCGTCTTGCAGCTaGATCCCCAAAGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPAASCS*IPKVAQ
Trigger: TTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGC...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTGTTCACAGTCCGGAATaGAGCTGCCCCGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSVHSPE*SCPVPG
Trigger: GCCTGGCACGGGGCAGCTGCATTCCGGACTGTGAAC...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTGAAGTGGAAGCTTTTTaGACAGTGAATACACTCTTC +
Preference number: 4 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSEVEAF*TVNTLF
Trigger: GAAGAGTGTATTCACTGTGCAAAAAGCTTCCACTTC...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTACATAGGAATCGTAGTTaGGGGCCAGGTCTGGGTGAT +
Preference number: 4 (lower is better)
Translates to: TMWRETRLGKFKASVIPLHRNRS*GPGLGD
Trigger: ATCACCCAGACCTGGCCCCCAACTACGATTCCTATG...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCATAGGAATCGTAGTTaGGGGCCAGGTCTGGGTGAT +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLAHRNRS*GPGLGD
Trigger: ATCACCCAGACCTGGCCCCCAACTACGATTCCTATG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAGGTACCAGGGTTTGTaGCCGTTCTCAGTGGTGCTG +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFRYQGL*PFSVVL
Trigger: CAGCACCACTGAGAACGGCCACAAACCCTGGTACCT...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCCTTTCCTTGTTTCTCTaGGTTTCGGACCTGCGATGG +
Preference number: 4 (lower is better)
Translates to: VQGDFCQFSHISLRATSTLSLFL*VSDLRW
Trigger: CCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAG...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGCTTTCCTTGTTTCTCTaGGTTTCGGACCTGCGATGG +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQLSLFL*VSDLRW
Trigger: CCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAG...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTGTTCGCAGAGCCGATTaGACTTCACCATCTCGCAGA +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLAVRRAD*TSPSRR
Trigger: TCTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAAC...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCGTTCAAGCACTGGTCTaGATTGGGACCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFVQALV*IGTITA
Trigger: GGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAAC...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGTTCAAGCACTGGTCTaGATTGGGACCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPVQALV*IGTITA
Trigger: GGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAAC...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGAAGTGGAAGCTTTTTaGACAGTGAATACACTCTTC +
Preference number: 4 (lower is better)
Translates to: LQSERRAGPCGERRGWGNEVEAF*TVNTLF
Trigger: GAAGAGTGTATTCACTGTGCAAAAAGCTTCCACTTC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCTTTAGCCAGCCGGCCTaGTCCATCTACTGTCTTTCC +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFFSQPA*SIYCLS
Trigger: GGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAA...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAAGGCCCAAACAAAAATaGAGCCCAGACCTTGGCGAC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPRPKQK*SPDLGD
Trigger: GTCGCCAAGGTCTGGGCTCCATTTTTGTTTGGGCCT...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTCTTTCCTTGTTTCTCTaGGTTTCGGACCTGCGATGG +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFLSLFL*VSDLRW
Trigger: CCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAG...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTAGCACTGGTCTGCATTaGGACCATCACAGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFSTGLH*DHHSLC
Trigger: ACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCT...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAAGCACTGGTCTGCATTaGGACCATCACAGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: TMWRETRLGKFKASVIPLSTGLH*DHHSLC
Trigger: ACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCT...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGACACAGTTCAAGCACTaGTCTGCATTGGGACCATCA +
Preference number: 4 (lower is better)
Translates to: WRETRLGKFKASVIPLAQTQFKH*SALGPS
Trigger: TGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGT...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGACACATTTCCAGTCTTaGAAGTGGAAGCTTTTTGCA +
Preference number: 4 (lower is better)
Translates to: DKHITVREESRTMWRETRTHFQS*KWKLFA
Trigger: TGCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGT...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCCTTCGACACACTTTGTaGGGTAAGCCAGGCATCTCC +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFLRHTL*GKPGIS
Trigger: GGAGATGCCTGGCTTACCCCACAAAGTGTGTCGAAG...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCTAGAGCCAAGGCAATaGTACCAGCCACCATGGGGG +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSLEPRQ*YQPPWG
Trigger: CCCCCATGGTGGCTGGTATCATTGCCTTGGCTCTAG...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCGTCCAGCATCCGGATaGCTCCTATCTTTGCATTAT +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLARPASG*LLSLHY
Trigger: ATAATGCAAAGATAGGAGGCATCCGGATGCTGGACG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCATGCGATGGTATATCCTaGACTTCCAGAGTCCACTCC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPCDGIS*TSRVHS
Trigger: GGAGTGGACTCTGGAAGTGCAGGATATACCATCGCA...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGGAAGTGGAAGCTTTTTaGACAGTGAATACACTCTTC +
Preference number: 4 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKEVEAF*TVNTLF
Trigger: GAAGAGTGTATTCACTGTGCAAAAAGCTTCCACTTC...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCTCTTCCTCGTCTTCTaGAGTCTCTGCCTGGGGTGG +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSLFLVF*SLCLGW
Trigger: CCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAG...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCATCACCACACTCGGGATaGCACACACTGGTCTGTAAA +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPSPHSG*HTLVCK
Trigger: TTTACAGACCAGTGTGTGCCATCCCGAGTGTGGTGA...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTTTCGCGCCTGTCTCTTaGCTCTGCGCTTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSFAPVS*LCASLP
Trigger: AGGAAGTGAAGCGCAGAGTCAAGAGACAGGCGCGAA...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTAGGTTCCCAGCTGTGTaGAGCCGGCTTTACATCTGC +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSRFPAV*SRLYIC
Trigger: GCAGATGTAAAGCCGGCTTCACACAGCTGGGAACCT...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp AGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTTGTGTGCCATGGAGGTTCTTATCAGTACAATaGATGTACCACATGTTAGAC +
Preference number: 4 (lower is better)
Translates to: SPECRGQIHLKSSCVPWRFLSVQ*MYHMLD
Trigger: GTCTAACATGTGGTACATGCATTGTACTGATAAGAA...CCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCCGTCCAGCATCCGGATaGCTCCTATCTTTGCATTAT +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFRPASG*LLSLHY
Trigger: ATAATGCAAAGATAGGAGGCATCCGGATGCTGGACG...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTGCAGCGTCTTGCAGCTaGATCCCCAAAGTAGCCCAA +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSAASCS*IPKVAQ
Trigger: TTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGC...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTAGGTACCAGGGTTTGTaGCCGTTCTCAGTGGTGCTG +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSRYQGL*PFSVVL
Trigger: CAGCACCACTGAGAACGGCCACAAACCCTGGTACCT...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
3UTR CAA 72 bp TTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCCTaGCCACCTACAGGTGACAAGACAAACACATTACAG +
Preference number: 4 (lower is better)
Translates to: FEVWIQQTTAES*PPTGDKTNTLQ
Trigger: CTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGGACTCAGCTGTTGTCTGTTGAATCCACACTTCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCCGGTGCCATATAAAATaGGGCTCCATTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFRCHIK*GSILSA
Trigger: AGCTGAAAGAATGGAGCCTCATTTTATATGGCACCG...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR TCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCACGGTGCCATATAAAATaGGGCTCCATTCTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPRCHIK*GSILSA
Trigger: AGCTGAAAGAATGGAGCCTCATTTTATATGGCACCG...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCATCCAGCAATCTCTTTaGCAAAAGTTGAGACTTGGT +
Preference number: 4 (lower is better)
Translates to: GRKINPALSCRLVPYWTSIQQSL*QKLRLG
Trigger: ACCAAGTCTCAACTTTTGGCAAAGAGATTGCTGGAT...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCGTTCTCAGTGGTGCTaGTTACGGAGATGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSRSQWC*LRRWCR
Trigger: TCTACACCATCTCCGTAAGCAGCACCACTGAGAACG...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTACACATTTCCAGTCTTaGAAGTGGAAGCTTTTTGCA +
Preference number: 4 (lower is better)
Translates to: MWRETRLGKFKASVIPLATHFQS*KWKLFA
Trigger: TGCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGT...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTACACATTTCCAGTCTTaGAAGTGGAAGCTTTTTGCA +
Preference number: 4 (lower is better)
Translates to: CFESNFRLQPASRVQGDFTHFQS*KWKLFA
Trigger: TGCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGT...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTCCTCCTTACACACAGTaGACTTCTCAGGTTCATCCA +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSPPYTQ*TSQVHP
Trigger: TGGATGAACCTGAGAAGTGCACTGTGTGTAAGGAGG...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCGTCATATCTCGGGGATaGGTCATAATCATTTCCATT +
Preference number: 4 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFVISRG*VIIISI
Trigger: AATGGAAATGATTATGACCCATCCCCGAGATATGAC...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTACACAGTTCAAGCACTaGTCTGCATTGGGACCATCA +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSTQFKH*SALGPS
Trigger: TGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGT...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTTTCACTTCCTGTTGTTaGAGCCATTTTACCTGTGGG +
Preference number: 4 (lower is better)
Translates to: FASLISYLKCGFNRQQLSFTSCC*SHFTCG
Trigger: CCCACAGGTAAAATGGCTGCAACAACAGGAAGTGAA...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR GCA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCATTCTTATCAGTACAATaGATGTACCACATGTTAGAC +
Preference number: 4 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPFLSVQ*MYHMLD
Trigger: GTCTAACATGTGGTACATGCATTGTACTGATAAGAA...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp CGCAGCCACGCGGTCCGCCGCGCCGGGGCCGCCCAGCACTTGCACTaGCCAGTGGTTGGTGTAGACGGGGCGCGGCGGCGGCAGCGCGGA +
Preference number: 5 (lower is better)
Translates to: RSHAVRRAGAAQHLH*PVVGVDGARRRQRG
Trigger: TCCGCGCTGCCGCCGCCGCGCCCCGTCTACACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCCCGGCGCGGCGGACCGCGTGGCTGCG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCTGGTCCGCACAGGCGTaGGTCAGGGCTGTGGTCCGT +
Preference number: 5 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLWSAQA*VRAVVR
Trigger: ACGGACCACAGCCCTGACCAACGCCTGTGCGGACCA...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp GGGATGCTCCTGGGCCTTTTGTCTGCGGTGGCCACGCATACGTGCTaGGAGGGCACTGCCGTCCACTTCCTCGCCTCCAGGACCAGAGCT +
Preference number: 5 (lower is better)
Translates to: GMLLGLLSAVATHTC*EGTAVHFLASRTRA
Trigger: AGCTCTGGTCCTGGAGGCGAGGAAGTGGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 90 bp CCTCGTCTTCTGGAGTCTCTGCCTGGGGTGGTTGTCCAGCAGCCTTaGGAGGCTCCTGCTCCGGGACGGAGAGCTCCAGCATCCGTGAGC +
Preference number: 5 (lower is better)
Translates to: PRLLESLPGVVVQQP*EAPAPGRRAPASVS
Trigger: GCTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp GGGCCTTTTGTCTGCGGTGGCCACGCATACGTGCTGGGAGGGCACTaGCGTCCACTTCCTCGCCTCCAGGACCAGAGCTTCTGCATCCAC +
Preference number: 5 (lower is better)
Translates to: GPFVCGGHAYVLGGH*RPLPRLQDQSFCIH
Trigger: GTGGATGCAGAAGCTCTGGTCCTGGAGGCGAGGAAGTGGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS GCA 90 bp GAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTGGTCCGTAGCACCTaGACTATGGGGATGCTCCTGGGCCTTTTGTCTGCGGTGGCCACG +
Preference number: 5 (lower is better)
Translates to: EWSAQALVRAVVRST*TMGMLLGLLSAVAT
Trigger: CGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: PPAVWWPVMHREEARPFILCLGW*SSSLGR
Trigger: CCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAG...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp AGCCTTGGGAGGCTCCTGCTCCGGGACGGAGAGCTCCAGCATCCGTaGGCGAGACTGATGGGAGCTGAAGGTGCGATATGGGTGCTCTGC +
Preference number: 5 (lower is better)
Translates to: SLGRLLLRDGELQHP*ARLMGAEGAIWVLC
Trigger: GCAGAGCACCCATATCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp AGGCGTTGGTCAGGGCTGTGGTCCGTAGCACCTGCACTATGGGGATaGTCCTGGGCCTTTTGTCTGCGGTGGCCACGCATACGTGCTGGG +
Preference number: 5 (lower is better)
Translates to: RRWSGLWSVAPALWG*SWAFCLRWPRIRAG
Trigger: CCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS GCA 90 bp AGAACCCACGGCGACAAGACAGGCACTGTGCTGGGCTCCTGCCCGTaGACGTCTCACATCCCTTATGGCAGCGACGGCAGCGTCTTGCAG +
Preference number: 5 (lower is better)
Translates to: RTHGDKTGTVLGSCP*TSHIPYGSDGSVLQ
Trigger: CTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp GGTGATAGAACCCACGGCGACAAGACAGGCACTGTGCTGGGCTCCTaGCCGTGCACGTCTCACATCCCTTATGGCAGCGACGGCAGCGTC +
Preference number: 5 (lower is better)
Translates to: GDRTHGDKTGTVLGS*PCTSHIPYGSDGSV
Trigger: GACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCTATCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp GTAGCACCTGCACTATGGGGATGCTCCTGGGCCTTTTGTCTGCGGTaGCCACGCATACGTGCTGGGAGGGCACTGCCGTCCACTTCCTCG +
Preference number: 5 (lower is better)
Translates to: VAPALWGCSWAFCLR*PRIRAGRALPSTSS
Trigger: CGAGGAAGTGGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 90 bp CCGCACAGGCGTTGGTCAGGGCTGTGGTCCGTAGCACCTGCACTATaGGGATGCTCCTGGGCCTTTTGTCTGCGGTGGCCACGCATACGT +
Preference number: 5 (lower is better)
Translates to: PHRRWSGLWSVAPAL*GCSWAFCLRWPRIR
Trigger: ACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 90 bp GCTCCAGGTACACCACACGCTGGTCTGAGTGGTCCGCACAGGCGTTaGTCAGGGCTGTGGTCCGTAGCACCTGCACTATGGGGATGCTCC +
Preference number: 5 (lower is better)
Translates to: APGTPHAGLSGPHRR*SGLWSVAPALWGCS
Trigger: GGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCTTGCTGCACGTGTGGTaGGTGATGCAGGAGGTTCCC +
Preference number: 5 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLLLHVW*VMQEVP
Trigger: GGGAACCTCCTGCATCACCAACCACACGTGCAGCAA...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp GGCTCCTGCTCCGGGACGGAGAGCTCCAGCATCCGTGAGCGAGACTaGTGGGAGCTGAAGGTGCGATATGGGTGCTCTGCGGTGCCATAT +
Preference number: 5 (lower is better)
Translates to: GSCSGTESSSIRERD*WELKVRYGCSAVPY
Trigger: ATATGGCACCGCAGAGCACCCATATCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp CGTCTCCTGGTGGTGATAGAACCCACGGCGACAAGACAGGCACTGTaGTGGGCTCCTGCCCGTGCACGTCTCACATCCCTTATGGCAGCG +
Preference number: 5 (lower is better)
Translates to: RLLVVIEPTATRQAL*WAPARARLTSLMAA
Trigger: CGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCTATCACCACCAGGAGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp GGGATGGCACACACCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTaGCTGGGGTGGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGG +
Preference number: 5 (lower is better)
Translates to: GMAHTCVLFLVFWSL*LGWLSSSLGRLLLR
Trigger: CCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGGTGTGTGCCATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CCA 90 bp CCACACGCTGGTCTGAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTATGGGGATGCTCCTGGGCCTTTTGT +
Preference number: 5 (lower is better)
Translates to: PHAGLSGPHRRWSGL*SVAPALWGCSWAFC
Trigger: ACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 90 bp AGGAGCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTaGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACGGAGAG +
Preference number: 5 (lower is better)
Translates to: RSCVLFLVFWSLCLG*LSSSLGRLLLRDGE
Trigger: CTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS CCA 90 bp CTCCTGGTGGTGATAGAACCCACGGCGACAAGACAGGCACTGTGCTaGGCTCCTGCCCGTGCACGTCTCACATCCCTTATGGCAGCGACG +
Preference number: 5 (lower is better)
Translates to: LLVVIEPTATRQALC*APARARLTSLMAAT
Trigger: CGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCTATCACCACCAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp CACACCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTaGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACGGAGAG +
Preference number: 5 (lower is better)
Translates to: HTCVLFLVFWSLCLG*LSSSLGRLLLRDGE
Trigger: CTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CCA 90 bp TGGCACACACCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTaGGGTGGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACG +
Preference number: 5 (lower is better)
Translates to: WHTPVYSSSSSGVSA*GGCPAALGGSCSGT
Trigger: CGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGGTGTGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CCA 90 bp GCTCCAGGTACACCACACGCTGGTCTGAGTGGTCCGCACAGGCGTTaGTCAGGGCTGTGGTCCGTAGCACCTGCACTATGGGGATGCTCT +
Preference number: 5 (lower is better)
Translates to: APGTPHAGLSGPHRR*SGLWSVAPALWGCS
Trigger: AGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
CDS GCA 90 bp AGATCGCCCCGGCGTGGGTGTGAGATAGAGATTCGGACAACCACATaGTCCAGGTACACCACACGCTGGTCTGAGTGGTCCGCACAGGCG +
Preference number: 5 (lower is better)
Translates to: RSPRRGCEIEIRTTT*SRYTTRWSEWSAQA
Trigger: CGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGCATGTGGTTGTCCGAATCTCTATCTCACACCCACGCCGGGGCGATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp ATGGAAGGAGCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTaGGGTGGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACG +
Preference number: 5 (lower is better)
Translates to: MEGAVYSSSSSGVSA*GGCPAALGGSCSGT
Trigger: CGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGCTCCTTCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCGGACCATCACAGCCTTaGTCACCACACTCGGGATGG +
Preference number: 5 (lower is better)
Translates to: PPAVWWPVMHREEARPFIGPSQP*SPHSGW
Trigger: CCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCC...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGGGACCATCACAGCCTTaGTCACCACACTCGGGATGG +
Preference number: 5 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRGPSQP*SPHSGW
Trigger: CCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCC...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCGTTCGCAGAGCCGATaGGACTTCACCATCTCGCAG +
Preference number: 5 (lower is better)
Translates to: CPSGCLVASDAQGGSEALRSQSR*DFTISQ
Trigger: CTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAACG...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp TTGGATGGAAGGAGCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTaGCTGGGGTGGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGG +
Preference number: 5 (lower is better)
Translates to: LDGRSCVLFLVFWSL*LGWLSSSLGRLLLR
Trigger: CCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGCTCCTTCCATCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS GCA 90 bp GCACGTCTCACATCCCTTATGGCAGCGACGGCAGCGTCTTGCAGCTaGATCCCCAAAGTAGCCCAAGGGGCACTCGCTCACACACTTCCT +
Preference number: 5 (lower is better)
Translates to: ARLTSLMAATAASCS*IPKVAQGALAHTLP
Trigger: AGGAAGTGTGTGAGCGAGTGCCCCTTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp ACCACACTCGGGATGGCACACACCTGTGTACTCTTCCTCGTCTTCTaGAGTCTCTGCCTGGGGTGGTTGTCCAGCAGCCTTGGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: TTLGMAHTCVLFLVF*SLCLGWLSSSLGRL
Trigger: GAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGGTGTGTGCCATCCCGAGTGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CCA 90 bp CCACACGCTGGTCTGAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTATGGGGATGCTCTTTGCTTCTAGAG +
Preference number: 5 (lower is better)
Translates to: PHAGLSGPHRRWSGL*SVAPALWGCSLLLE
Trigger: CTCTAGAAGCAAAGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCAAGGCTGATGCCCAGAGACTaGGCCTCCACCACATCGGTC +
Preference number: 5 (lower is better)
Translates to: VEPSSGGDTAVRCRATPRLMPRD*ASTTSV
Trigger: GACCGATGTGGTGGAGGCCAAGTCTCTGGGCATCAG...CCTTGGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQLCLGW*SSSLGR
Trigger: CCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAG...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGAAGGTCTCATCGGCATaGCTGCACGTGTGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRKVSSA*LHVWLV
Trigger: CACCAACCACACGTGCAGCAATGCCGATGAGACCTT...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp AGGAGAGCCTTGGATGGAAGGAGCTGTGTACTCTTCCTCGTCTTCTaGAGTCTCTGCCTGGGGTGGTTGTCCAGCAGCCTTGGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: RRALDGRSCVLFLVF*SLCLGWLSSSLGRL
Trigger: GAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGCTCCTTCCATCCAAGGCTCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATGGGGCCGCCCAGCACTaGCACTGCCCAGTGGTTGGT +
Preference number: 5 (lower is better)
Translates to: LQSERRAGPCGERRGWGNGAAQH*HCPVVG
Trigger: ACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCCC...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp GGCCCAGGAGGCCCCAGGGACACAGGTAGAACAGCCATGTGGACAGCTCGGCTCAGTATTAGGAGAGCCTaGGATGGAAGGAGCTGTGTA +
Preference number: 5 (lower is better)
Translates to: GPGGPRDTGRTAMWTARLSIRRA*DGRSCV
Trigger: TACACAGCTCCTTCCATCCAAGGCTCTCCTAATACT...GAGCCGAGCTGTCCACATGGCTGTTCTACCTGTGTCCCTGGGGCCTCCTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGTCACACACTTCCTGTTaGTCTTGGAGTTCCCCAGGC +
Preference number: 5 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRSHTSC*SWSSPG
Trigger: GCCTGGGGAACTCCAAGACAAACAGGAAGTGTGTGA...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGCATCTTCGACACACTTaGTGGGGTAAGCCAGGCATC +
Preference number: 5 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRHLRHT*WGKPGI
Trigger: GATGCCTGGCTTACCCCACAAAGTGTGTCGAAGATG...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp AGCTCCGTTGACTTTCCAGTCGCTCGCCTTCAGATGAGCTGGCCGTaGTGTCTTCACCAGCAGGTGCTGCACATCCCTCCAGGTCAACTG +
Preference number: 5 (lower is better)
Translates to: SSVDFPVARLQMSWP*CLHQQVLHIPPGQL
Trigger: CAGTTGACCTGGAGGGATGTGCAGCACCTGCTGGTGAAGACATCACGGCCAGCTCATCTGAAGGCGAGCGACTGGAAAGTCAACGGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS TCA 90 bp TGGGCCCCACACAGGTCCGGCAGGTGTGATGGCATTCCCCACATTTaGCGAGCTCTGAATCGAAGTAGGTACCCGGTTCACAGTCCGGAA +
Preference number: 5 (lower is better)
Translates to: WAPHRSGRCDGIPHI*RALNRSRYPVHSPE
Trigger: TTCCGGACTGTGAACCGGGTACCTACTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCATCACACCTGCCGGACCTGTGTGGGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp AGTAGGAGTTGTTGGCCGAGGCAGCGACTTCACCCGCACAGCGAGTaGCATGTTTGTTCTCGTTGCTGGCGTCATATCTCGGGGATGGGT +
Preference number: 5 (lower is better)
Translates to: SRSCWPRQRLHPHSE*HVCSRCWRHISGMG
Trigger: ACCCATCCCCGAGATATGACGCCAGCAACGAGAACAAACATGGCACTCGCTGTGCGGGTGAAGTCGCTGCCTCGGCCAACAACTCCTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGTCCCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTGCGCTTCACTTCCTGTaGTTGCAGCCATTTTACCTG +
Preference number: 5 (lower is better)
Translates to: CPSGCLVASDAQGGSEALALHFL*LQPFYL
Trigger: CAGGTAAAATGGCTGCAACAACAGGAAGTGAAGCGC...AAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGCTGATGCCCAGAGACTaGGCCTCCACCACATCGGTC +
Preference number: 5 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQLMPRD*ASTTSV
Trigger: GACCGATGTGGTGGAGGCCAAGTCTCTGGGCATCAG...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp ACAGGTCCGGCAGGTGTGATGGCATTCCCCACATTTGACGAGCTCTaGATCGAAGTAGGTACCCGGTTCACAGTCCGGAATGCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: TGPAGVMAFPTFDEL*IEVGTRFTVRNAAA
Trigger: GGCAGCTGCATTCCGGACTGTGAACCGGGTACCTACTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCATCACACCTGCCGGACCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp GCATCCGGATGCCTCCTATCTTTGCATTATATGCGATGCCCACGATaGAGTAGGAGTTGTTGGCCGAGGCAGCGACTTCACCCGCACAGC +
Preference number: 5 (lower is better)
Translates to: ASGCLLSLHYMRCPR*SRSCWPRQRLHPHS
Trigger: GCTGTGCGGGTGAAGTCGCTGCCTCGGCCAACAACTCCTACTGCATCGTGGGCATCGCATATAATGCAAAGATAGGAGGCATCCGGATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 90 bp CGCCGTCCAGCATCCGGATGCCTCCTATCTTTGCATTATATGCGATaGCCACGATGCAGTAGGAGTTGTTGGCCGAGGCAGCGACTTCAC +
Preference number: 5 (lower is better)
Translates to: RRPASGCLLSLHYMR*PRCSRSCWPRQRLH
Trigger: GTGAAGTCGCTGCCTCGGCCAACAACTCCTACTGCATCGTGGGCATCGCATATAATGCAAAGATAGGAGGCATCCGGATGCTGGACGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 90 bp GAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTGGTCCGTAGCACCTaGACTATGGGGATGCTCTTTGCTTCTAGAGCCAAGGCAATGATA +
Preference number: 5 (lower is better)
Translates to: EWSAQALVRAVVRST*TMGMLFASRAKAMI
Trigger: TATCATTGCCTTGGCTCTAGAAGCAAAGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTAAGGGCCACCTCCACCTGTTCAGGTGCTCAGAGATGCTGCAGTAGAACCCAGGCCATACTCGAAAGCTaGTTTAGCCAGCCGGCCTGG +
Preference number: 5 (lower is better)
Translates to: LRATSTCSGAQRCCSRTQAILES*FSQPAW
Trigger: CCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGC...CTGGGTTCTACTGCAGCATCTCTGAGCACCTGAACAGGTGGAGGTGGCCCTTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCTCACACACTTCCTGTTaGTCTTGGAGTTCCCCAGGC +
Preference number: 5 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPSHTSC*SWSSPG
Trigger: GCCTGGGGAACTCCAAGACAAACAGGAAGTGTGTGA...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGCAGTAGAACCCAGCTCTGGGGGAGATACAGCTGTCAGATGCAGGGCTACCCCCATCTTCGACACACTTaGTGGGGTAAGCCAGGCATC +
Preference number: 5 (lower is better)
Translates to: CSRTQLWGRYSCQMQGYPHLRHT*WGKPGI
Trigger: GATGCCTGGCTTACCCCACAAAGTGTGTCGAAGATG...GGGGTAGCCCTGCATCTGACAGCTGTATCTCCCCCAGAGCTGGGTTCTACTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGGGGGCCGCCCAGCACTaGCACTGCCCAGTGGTTGGT +
Preference number: 5 (lower is better)
Translates to: WRETRLGKFKASVIPLAQGAAQH*HCPVVG
Trigger: ACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCCC...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp GGGGCTGCCGTTTCGGAAGGAGCTGACTGCGTAGACATAGATTCTCTCTCTAGTGCCATACTCGAAAGCTaGTTTAGCCAGCCGGCCTGG +
Preference number: 5 (lower is better)
Translates to: GAAVSEGADCVDIDSLSSAILES*FSQPAW
Trigger: CCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGC...ACTAGAGAGAGAATCTATGTCTACGCAGTCAGCTCCTTCCGAAACGGCAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TCCTCCTTCACAGGCTCTGTAGCTGTAGATGGCTGGTGGCTCGGGCCCAGGAGGCACACATTTCCAGTCTaGGAAGTGGAAGCTTTTTGC +
Preference number: 5 (lower is better)
Translates to: SSFTGSVAVDGWWLGPRRHTFPV*EVEAFC
Trigger: GCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGTG...CCTCCTGGGCCCGAGCCACCAGCCATCTACAGCTACAGAGCCTGTGAAGGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CCTCCGGCTGTTTGGTGGCCAGTGATGCACAGGGAGGAAGCGAGGCCCTTCATCCACACATTTCCAGTCTaGGAAGTGGAAGCTTTTTGC +
Preference number: 5 (lower is better)
Translates to: PPAVWWPVMHREEARPFIHTFPV*EVEAFC
Trigger: GCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGTG...GATGAAGGGCCTCGCTTCCTCCCTGTGCATCACTGGCCACCAAACAGCCGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAATTGCTGCACGTGTGGTaGGTGATGCAGGAGGTTCCC +
Preference number: 5 (lower is better)
Translates to: HYSQRGEQDHVERDEVGELLHVW*VMQEVP
Trigger: GGGAACCTCCTGCATCACCAACCACACGTGCAGCAA...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp GGCACTCGCTCACACACTTCCTGTTTGTCTTGGAGTTCCCCAGGCTaGAGTGGACACAGTTCAAGCACTGGTCTGCATTGGGACCATCAC +
Preference number: 5 (lower is better)
Translates to: GTRSHTSCLSWSSPG*SGHSSSTGLHWDHH
Trigger: GTGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAACTCCAAGACAAACAGGAAGTGTGTGAGCGAGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCTGATGCCCAGAGACTaGGCCTCCACCACATCGGTC +
Preference number: 5 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKLMPRD*ASTTSV
Trigger: GACCGATGTGGTGGAGGCCAAGTCTCTGGGCATCAG...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGGCCATACTCGAAAGCTaGTTTAGCCAGCCGGCCTGG +
Preference number: 5 (lower is better)
Translates to: DKHITVREESRTMWRETRAILES*FSQPAW
Trigger: CCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGC...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCTGGTCCGCACAGGCGTaGGTCAGGGCTGTGGTCCGT +
Preference number: 5 (lower is better)
Translates to: GRKINPALSCRLVPYWTSWSAQA*VRAVVR
Trigger: ACGGACCACAGCCCTGACCAACGCCTGTGCGGACCA...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCGTTCGCAGAGCCGATaGGACTTCACCATCTCGCAG +
Preference number: 5 (lower is better)
Translates to: DKHITVREESRTMWRETRRSQSR*DFTISQ
Trigger: CTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAACG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp TTTGTCTTGGAGTTCCCCAGGCTGAAGTGGACACAGTTCAAGCACTaGTCTGCATTGGGACCATCACAGCCTTTGTCACCACACTCGGGA +
Preference number: 5 (lower is better)
Translates to: FVLEFPRLKWTQFKH*SALGPSQPLSPHSG
Trigger: TCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAACTCCAAGACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCAAGGGGATTTTTGGTCCGCACAGGCGTaGGTCAGGGCTGTGGTCCGT +
Preference number: 5 (lower is better)
Translates to: CFESNFRLQPASRVQGDFWSAQA*VRAVVR
Trigger: ACGGACCACAGCCCTGACCAACGCCTGTGCGGACCA...AAAATCCCCTTGAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: MWRETRLGKFKASVIPLALCLGW*SSSLGR
Trigger: CCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAACATCTTCGACACACTTaGTGGGGTAAGCCAGGCATC +
Preference number: 5 (lower is better)
Translates to: HYSQRGEQDHVERDEVGEHLRHT*WGKPGI
Trigger: GATGCCTGGCTTACCCCACAAAGTGTGTCGAAGATG...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp AGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCAGTTGTGTGCCATGGAGGAAGGTCTCATCGGCATaGCTGCACGTGTGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: SPECRGQIHLKSSCVPWRKVSSA*LHVWLV
Trigger: CACCAACCACACGTGCAGCAATGCCGATGAGACCTT...CCTCCATGGCACACAACTGCTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGCGTTCGCAGAGCCGATaGGACTTCACCATCTCGCAG +
Preference number: 5 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKRSQSR*DFTISQ
Trigger: CTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAACG...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp CTTTCCTGTGTAGCCACGCTTCCACGCCGCCTGGACGTTCATCTCTaGCCGACAGCGACTGTTCTTATCAGTACAATGCATGTACCACAT +
Preference number: 5 (lower is better)
Translates to: LSCVATLPRRLDVHL*PTATVLISTMHVPH
Trigger: ATGTGGTACATGCATTGTACTGATAAGAACAGTCGCTGTCGGTCAGAGATGAACGTCCAGGCGGCGTGGAAGCGTGGCTACACAGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 90 bp AGGCTCCATTCTTTCAGCTTTCCTTGTTTCTCTGGGTTTCGGACCTaGGATGGTATATCCTGCACTTCCAGAGTCCACTCCCCTTCAGCC +
Preference number: 5 (lower is better)
Translates to: RLHSFSFPCFSGFRT*DGISCTSRVHSPSA
Trigger: GGCTGAAGGGGAGTGGACTCTGGAAGTGCAGGATATACCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAGCTGAAAGAATGGAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 90 bp ATTGACATCGTAGCTTGCATAGGAATCGTAGTTGGGGGCCAGGTCTaGGTGATTCCTTTCTATGCCGTCATCGAGGATGGTGACGACCAC +
Preference number: 5 (lower is better)
Translates to: IDIVACIGIVVGGQV*VIPFYAVIEDGDDH
Trigger: GTGGTCGTCACCATCCTCGATGACGGCATAGAAAGGAATCACCCAGACCTGGCCCCCAACTACGATTCCTATGCAAGCTACGATGTCAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 90 bp ACCCTTTTTAATGCCATACTCGAAAGCTTGTTTAGCCAGCCGGCCTaGTCCATCTACTGTCTTTCCGTCATCATCGGGTCCCCAACTGGC +
Preference number: 5 (lower is better)
Translates to: TLFNAILESLFSQPA*SIYCLSVIIGSPTG
Trigger: GCCAGTTGGGGACCCGATGATGACGGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGCATTAAAAAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 90 bp CGTTGCTGGCGTCATATCTCGGGGATGGGTCATAATCATTTCCATTaGCATCGTAGCTTGCATAGGAATCGTAGTTGGGGGCCAGGTCTG +
Preference number: 5 (lower is better)
Translates to: RCWRHISGMGHNHFH*HRSLHRNRSWGPGL
Trigger: CAGACCTGGCCCCCAACTACGATTCCTATGCAAGCTACGATGTCAATGGAAATGATTATGACCCATCCCCGAGATATGACGCCAGCAACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 90 bp CACTCGGGATGGCACACACTGGTCTGTAAAGTATTAGGAGAGCCTTaGATGGAAGGAGCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCT +
Preference number: 5 (lower is better)
Translates to: HSGWHTLVCKVLGEP*MEGAVYSSSSSGVS
Trigger: AGAGACTCCAGAAGACGAGGAAGAGTACACAGCTCCTTCCATCCAAGGCTCTCCTAATACTTTACAGACCAGTGTGTGCCATCCCGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCTCCAGGTCAACTGGTaGTTTGCTTCTAGAGCCAAG +
Preference number: 5 (lower is better)
Translates to: DKHITVREESRTMWRETRLQVNW*FASRAK
Trigger: CTTGGCTCTAGAAGCAAACAACCAGTTGACCTGGAG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCTTATGCCCAGCTCCGTaGACTTTCCAGTCGCTCGCC +
Preference number: 5 (lower is better)
Translates to: GRKINPALSCRLVPYWTSLCPAP*TFQSLA
Trigger: GGCGAGCGACTGGAAAGTCAACGGAGCTGGGCATAA...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGTTATGCCCAGCTCCGTaGACTTTCCAGTCGCTCGCC +
Preference number: 5 (lower is better)
Translates to: WRETRLGKFKASVIPLAQLCPAP*TFQSLA
Trigger: GGCGAGCGACTGGAAAGTCAACGGAGCTGGGCATAA...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp CATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAAGTATTAGGAGAGCCTaGGATGGAAGGAGCTGTGTA +
Preference number: 5 (lower is better)
Translates to: HYSQRGEQDHVERDEVGESIRRA*DGRSCV
Trigger: TACACAGCTCCTTCCATCCAAGGCTCTCCTAATACT...TTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGTCACACACTTCCTGTTaGTCTTGGAGTTCCCCAGGC +
Preference number: 5 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKSHTSC*SWSSPG
Trigger: GCCTGGGGAACTCCAAGACAAACAGGAAGTGTGTGA...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTGGCATTCCCCACATTaGACGAGCTCTGAATCGAAG +
Preference number: 5 (lower is better)
Translates to: DKHITVREESRTMWRETRWHSPH*TSSESK
Trigger: CTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCA...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGTTGGGGAAATCTTCACTTCCTGTTGTaGCAGCCATTTTACCTGTGG +
Preference number: 5 (lower is better)
Translates to: LQSERRAGPCGERRGWGNLHFLL*QPFYLW
Trigger: CCACAGGTAAAATGGCTGCAACAACAGGAAGTGAAG...ATTTCCCCAACCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GACAAACACATTACAGTCAGAGAGGAGAGCAGGACCATGTGGAGAGAGACGAGGCTTCACTTCCTGTTGTaGCAGCCATTTTACCTGTGG +
Preference number: 5 (lower is better)
Translates to: DKHITVREESRTMWRETRLHFLL*QPFYLW
Trigger: CCACAGGTAAAATGGCTGCAACAACAGGAAGTGAAG...CCTCGTCTCTCTCCACATGGTCCTGCTCTCCTCTCTGACTGTAATGTGTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGGCGCTTCACTTCCTGTaGTTGCAGCCATTTTACCTG +
Preference number: 5 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQALHFL*LQPFYL
Trigger: CAGGTAAAATGGCTGCAACAACAGGAAGTGAAGCGC...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CCTTGCCACCTACAGGTGACAAGACAAACACATTACAGTCAGAGAGGAGAGCAGTGGCATTCCCCACATTaGACGAGCTCTGAATCGAAG +
Preference number: 5 (lower is better)
Translates to: PCHLQVTRQTHYSQRGEQWHSPH*TSSESK
Trigger: CTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCA...CTGCTCTCCTCTCTGACTGTAATGTGTTTGTCTTGTCACCTGTAGGTGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp CATCCACCCAAGAACAGAGAGTCCCGAGTGCAGAGGCCAAATACACTTGAAAAGTGGCATTCCCCACATTaGACGAGCTCTGAATCGAAG +
Preference number: 5 (lower is better)
Translates to: HPPKNRESRVQRPNTLEKWHSPH*TSSESK
Trigger: CTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCA...CTTTTCAAGTGTATTTGGCCTCTGCACTCGGGACTCTCTGTTCTTGGGTGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCAGAAGGTCTCATCGGCATaGCTGCACGTGTGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: WRETRLGKFKASVIPLAQKVSSA*LHVWLV
Trigger: CACCAACCACACGTGCAGCAATGCCGATGAGACCTT...CTGAGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp ATTTTTGTTCCTGTTTTGAGTCCAACTTTAGACTGCAGCCAGCAAGCAGAGTTCGGACCATCACAGCCTTaGTCACCACACTCGGGATGG +
Preference number: 5 (lower is better)
Translates to: IFVPVLSPTLDCSQQAEFGPSQP*SPHSGW
Trigger: CCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCC...GAACTCTGCTTGCTGGCTGCAGTCTAAAGTTGGACTCAAAACAGGAACAAAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 90 bp ATATCTCGGGGATGGGTCATAATCATTTCCATTGACATCGTAGCTTaGATAGGAATCGTAGTTGGGGGCCAGGTCTGGGTGATTCCTTTC +
Preference number: 5 (lower is better)
Translates to: ISRGWVIIISIDIVA*IGIVVGGQVWVIPF
Trigger: GAAAGGAATCACCCAGACCTGGCCCCCAACTACGATTCCTATGCAAGCTACGATGTCAATGGAAATGATTATGACCCATCCCCGAGATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCGCGCTTCACTTCCTGTaGTTGCAGCCATTTTACCTG +
Preference number: 5 (lower is better)
Translates to: VQGDFCQFSHISLRATSTALHFL*LQPFYL
Trigger: CAGGTAAAATGGCTGCAACAACAGGAAGTGAAGCGC...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GTTCAAGGGGATTTTTGTCAATTTAGCCACATATCCTTAAGGGCCACCTCCACCAGGTCAACTGGTTGTTaGCTTCTAGAGCCAAGGCAA +
Preference number: 5 (lower is better)
Translates to: VQGDFCQFSHISLRATSTRSTGC*LLEPRQ
Trigger: TTGCCTTGGCTCTAGAAGCAAACAACCAGTTGACCT...GGTGGAGGTGGCCCTTAAGGATATGTGGCTAAATTGACAAAAATCCCCTTGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCTCCAGGTCAACTGGTaGTTTGCTTCTAGAGCCAAG +
Preference number: 5 (lower is better)
Translates to: MWRETRLGKFKASVIPLALQVNW*FASRAK
Trigger: CTTGGCTCTAGAAGCAAACAACCAGTTGACCTGGAG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS-3UTR CAA 90 bp ATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTAGCTCTTCACTTCCTGTTGTaGCAGCCATTTTACCTGTGG +
Preference number: 5 (lower is better)
Translates to: MWRETRLGKFKASVIPLALHFLL*QPFYLW
Trigger: CCACAGGTAAAATGGCTGCAACAACAGGAAGTGAAG...AGCTAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp GGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCAGCCACACATTTCCAGTCTaGGAAGTGGAAGCTTTTTGC +
Preference number: 5 (lower is better)
Translates to: GRKINPALSCRLVPYWTSHTFPV*EVEAFC
Trigger: GCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGTG...GCTGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTTTGCTGCACGTGTGGTaGGTGATGCAGGAGGTTCCC +
Preference number: 5 (lower is better)
Translates to: FASLISYLKCGFNRQQLSLLHVW*VMQEVP
Trigger: GGGAACCTCCTGCATCACCAACCACACGTGCAGCAA...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp ACCATGTGGAGAGAGACGAGGTTGGGGAAATTTAAGGCAAGTGTTATTCCCTTATTCTTTCAGCTTTCCTaGTTTCTCTGGGTTTCGGAC +
Preference number: 5 (lower is better)
Translates to: TMWRETRLGKFKASVIPLFFQLS*FLWVSD
Trigger: GTCCGAAACCCAGAGAAACAAGGAAAGCTGAAAGAA...TAAGGGAATAACACTTGCCTTAAATTTCCCCAACCTCGTCTCTCTCCACATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTGGCAGAAAAATCAATCCAGCTCTATCATGTAGGCTTGTACCATACTGGACCATTCTTTCAGCTTTCCTaGTTTCTCTGGGTTTCGGAC +
Preference number: 5 (lower is better)
Translates to: LAEKSIQLYHVGLYHTGPFFQLS*FLWVSD
Trigger: GTCCGAAACCCAGAGAAACAAGGAAAGCTGAAAGAA...TGGTCCAGTATGGTACAAGCCTACATGATAGAGCTGGATTGATTTTTCTGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS-3UTR CAA 90 bp TTTGCTTCACTGATTTCTTATTTGAAGTGTGGATTCAACAGACAACAGCTGAGTTTCTTTCAGCTTTCCTaGTTTCTCTGGGTTTCGGAC +
Preference number: 5 (lower is better)
Translates to: FASLISYLKCGFNRQQLSFFQLS*FLWVSD
Trigger: GTCCGAAACCCAGAGAAACAAGGAAAGCTGAAAGAA...ACTCAGCTGTTGTCTGTTGAATCCACACTTCAAATAAGAAATCAGTGAAGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp CGCCGGGGCCGCCCAGCACTTGCACTGCCCAGTGGTTaGTGTAGACGGGGCGCGGCGGCGGCAGCGCGGAGC +
Preference number: 6 (lower is better)
Translates to: RRGRPALALPSG*CRRGAAAAARS
Trigger: GCTCCGCGCTGCCGCCGCCGCGCCCCGTCTACACCAACCACTGGGCAGTGCAAGTGCTGGGCGGCCCCGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS GCA 72 bp GCCTGGGGTGGTTGTCCAGCAGCCTTGGGAGGCTCCTaGTCCGGGACGGAGAGCTCCAGCATCCGTGAGCGA +
Preference number: 6 (lower is better)
Translates to: AWGGCPAALGGS*SGTESSSIRER
Trigger: TCGCTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp CTCCTGGGCCTTTTGTCTGCGGTGGCCACGCATACGTaGTGGGAGGGCACTGCCGTCCACTTCCTCGCCTCC +
Preference number: 6 (lower is better)
Translates to: LLGLLSAVATHT*WEGTAVHFLAS
Trigger: GGAGGCGAGGAAGTGGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 72 bp CTGGGCCTTTTGTCTGCGGTGGCCACGCATACGTGCTaGGAGGGCACTGCCGTCCACTTCCTCGCCTCCAGG +
Preference number: 6 (lower is better)
Translates to: LGLLSAVATHTC*EGTAVHFLASR
Trigger: CCTGGAGGCGAGGAAGTGGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 72 bp CTGGAGTCTCTGCCTGGGGTGGTTGTCCAGCAGCCTTaGGAGGCTCCTGCTCCGGGACGGAGAGCTCCAGCA +
Preference number: 6 (lower is better)
Translates to: LESLPGVVVQQP*EAPAPGRRAPA
Trigger: TGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp GGCGACAAGACAGGCACTGTGCTGGGCTCCTGCCCGTaGACGTCTCACATCCCTTATGGCAGCGACGGCAGC +
Preference number: 6 (lower is better)
Translates to: GDKTGTVLGSCP*TSHIPYGSDGS
Trigger: GCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp GCACTATGGGGATGCTCCTGGGCCTTTTGTCTGCGGTaGCCACGCATACGTGCTGGGAGGGCACTGCCGTCC +
Preference number: 6 (lower is better)
Translates to: ALWGCSWAFCLR*PRIRAGRALPS
Trigger: GGACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 72 bp GCTGGGCTCCTGCCCGTGCACGTCTCACATCCCTTATaGCAGCGACGGCAGCGTCTTGCAGCTGCATCCCCA +
Preference number: 6 (lower is better)
Translates to: AGLLPVHVSHPL*QRRQRLAAASP
Trigger: TGGGGATGCAGCTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp GCTGTGGTCCGTAGCACCTGCACTATGGGGATGCTCCTGGGCCTTTaGTCTGCGGTGGCCACGCATACGTGCTGGGAGGGCACTGCCGTC +
Preference number: 6 (lower is better)
Translates to: AVVRSTCTMGMLLGL*SAVATHTCWEGTAV
Trigger: GACGGCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CAA 90 bp TCCTCGTCTTCTGGAGTCTCTGCCTGGGGTGGTTGTCCAGCAGCCTaGGGAGGCTCCTGCTCCGGGACGGAGAGCTCCAGCATCCGTGAG +
Preference number: 6 (lower is better)
Translates to: SSSSGVSAWGGCPAA*GGSCSGTESSSIRE
Trigger: CTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp CACCTGCACTATGGGGATGCTCCTGGGCCTTTTGTCTaGGGTGGCCACGCATACGTGCTGGGAGGGCACTGC +
Preference number: 6 (lower is better)
Translates to: HLHYGDAPGPFV*GGHAYVLGGHC
Trigger: GCAGTGCCCTCCCAGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS GCA 72 bp ACCCACGGCGACAAGACAGGCACTGTGCTGGGCTCCTaGCCGTGCACGTCTCACATCCCTTATGGCAGCGAC +
Preference number: 6 (lower is better)
Translates to: THGDKTGTVLGS*PCTSHIPYGSD
Trigger: GTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp GGTCTGAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTATGGGGATGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: GLSGPHRRWSGL*SVAPALWGCSW
Trigger: CCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CAA 72 bp CTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGAC +
Preference number: 6 (lower is better)
Translates to: LFLVFWSLCLGW*SSSLGRLLLRD
Trigger: GTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp TGCTCCAGGTACACCACACGCTGGTCTGAGTGGTCCGCACAGGCGTaGGTCAGGGCTGTGGTCCGTAGCACCTGCACTATGGGGATGCTC +
Preference number: 6 (lower is better)
Translates to: CSRYTTRWSEWSAQA*VRAVVRSTCTMGML
Trigger: GAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp AGCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACGGAGAGCTC +
Preference number: 6 (lower is better)
Translates to: SCVLFLVFWSLCLGW*SSSLGRLLLRDGEL
Trigger: GAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS CAA 90 bp TGCCCGTGCACGTCTCACATCCCTTATGGCAGCGACGGCAGCGTCTaGCAGCTGCATCCCCAAAGTAGCCCAAGGGGCACTCGCTCACAC +
Preference number: 6 (lower is better)
Translates to: CPCTSHIPYGSDGSV*QLHPQSSPRGTRSH
Trigger: GTGTGAGCGAGTGCCCCTTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGTGCACGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp ACCTGTGTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTGGTaGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGGGACGGAGAGCTC +
Preference number: 6 (lower is better)
Translates to: TCVLFLVFWSLCLGW*SSSLGRLLLRDGEL
Trigger: GAGCTCTCCGTCCCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTACACAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS TCA 72 bp TCCGGGACGGAGAGCTCCAGCATCCGTGAGCGAGACTaGTGGGAGCTGAAGGTGCGATATGGGTGCTCTGCG +
Preference number: 6 (lower is better)
Translates to: SGTESSSIRERD*WELKVRYGCSA
Trigger: CGCAGAGCACCCATATCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTCTCCGTCCCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp AGGCTCCTGCTCCGGGACGGAGAGCTCCAGCATCCGTaGGCGAGACTGATGGGAGCTGAAGGTGCGATATGG +
Preference number: 6 (lower is better)
Translates to: RLLLRDGELQHP*ARLMGAEGAIW
Trigger: CCATATCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTCTCCGTCCCGGAGCAGGAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp GCACAGGCGTTGGTCAGGGCTGTGGTCCGTAGCACCTaGACTATGGGGATGCTCCTGGGCCTTTTGTCTGCG +
Preference number: 6 (lower is better)
Translates to: AQALVRAVVRST*TMGMLLGLLSA
Trigger: CGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 72 bp ACCACATGCTCCAGGTACACCACACGCTGGTCTGAGTaGTCCGCACAGGCGTTGGTCAGGGCTGTGGTCCGT +
Preference number: 6 (lower is better)
Translates to: TTCSRYTTRWSE*SAQALVRAVVR
Trigger: ACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGCATGTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp GTACTCTTCCTCGTCTTCTGGAGTCTCTGCCTGGGGTaGTTGTCCAGCAGCCTTGGGAGGCTCCTGCTCCGG +
Preference number: 6 (lower is better)
Translates to: VLFLVFWSLCLG*LSSSLGRLLLR
Trigger: CCGGAGCAGGAGCCTCCCAAGGCTGCTGGACAACCACCCCAGGCAGAGACTCCAGAAGACGAGGAAGAGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp TGTGGCCGTCGGTGCAGCGCTGACGCAGATCTGTGGTaGCGATCTTCCGTTCATAGAAGGCCCCGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: CGRRCSADADLW*RSSVHRRPRCC
Trigger: ACAGCAGCGGGGCCTTCTATGAACGGAAGATCGTCACCACAGATCTGCGTCAGCGCTGCACCGACGGCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp GACAACCACATGCTCCAGGTACACCACACGCTGGTCTaGGTGGTCCGCACAGGCGTTGGTCAGGGCTGTGGT +
Preference number: 6 (lower is better)
Translates to: DNHMLQVHHTLV*VVRTGVGQGCG
Trigger: ACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACCAGCGTGTGGTGTACCTGGAGCATGTGGTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp ACATCCCTTATGGCAGCGACGGCAGCGTCTTGCAGCTaGATCCCCAAAGTAGCCCAAGGGGCACTCGCTCAC +
Preference number: 6 (lower is better)
Translates to: TSLMAATAASCS*IPKVAQGALAH
Trigger: GTGAGCGAGTGCCCCTTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp GTGGTGATAGAACCCACGGCGACAAGACAGGCACTGTaGTGGGCTCCTGCCCGTGCACGTCTCACATCCCTT +
Preference number: 6 (lower is better)
Translates to: VVIEPTATRQAL*WAPARARLTSL
Trigger: AAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCTATCACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp CTGTGGTCCGTAGCACCTGCACTATGGGGATGCTCCTaGGCCTTTTGTCTGCGGTGGCCACGCATACGTGCT +
Preference number: 6 (lower is better)
Translates to: LWSVAPALWGCS*AFCLRWPRIRA
Trigger: AGCACGTATGCGTGGCCACCGCAGACAAAAGGCCCAGGAGCATCCCCATAGTGCAGGTGCTACGGACCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS CCA 72 bp GGTCTGAGTGGTCCGCACAGGCGTTGGTCAGGGCTGTaGTCCGTAGCACCTGCACTATGGGGATGCTCTTTG +
Preference number: 6 (lower is better)
Translates to: GLSGPHRRWSGL*SVAPALWGCSL
Trigger: CAAAGAGCATCCCCATAGTGCAGGTGCTACGGACCACAGCCCTGACCAACGCCTGTGCGGACCACTCAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176209.2
CDS CCA 72 bp GTGATAGAACCCACGGCGACAAGACAGGCACTGTGCTaGGCTCCTGCCCGTGCACGTCTCACATCCCTTATG +
Preference number: 6 (lower is better)
Translates to: VIEPTATRQALC*APARARLTSLM
Trigger: CATAAGGGATGTGAGACGTGCACGGGCAGGAGCCCAGCACAGTGCCTGTCTTGTCGCCGTGGGTTCTATCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 72 bp GAGGCAGCGACTTCACCCGCACAGCGAGTGCCATGTTaGTTCTCGTTGCTGGCGTCATATCTCGGGGATGGG +
Preference number: 6 (lower is better)
Translates to: EAATSPAQRVPC*FSLLASYLGDG
Trigger: CCCATCCCCGAGATATGACGCCAGCAACGAGAACAAACATGGCACTCGCTGTGCGGGTGAAGTCGCTGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CAA 72 bp ACGTCTCACATCCCTTATGGCAGCGACGGCAGCGTCTaGCAGCTGCATCCCCAAAGTAGCCCAAGGGGCACT +
Preference number: 6 (lower is better)
Translates to: TSHIPYGSDGSV*QLHPQSSPRGT
Trigger: AGTGCCCCTTGGGCTACTTTGGGGATGCAGCTGCAAGACGCTGCCGTCGCTGCCATAAGGGATGTGAGACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp GACTTTCCAGTCGCTCGCCTTCAGATGAGCTGGCCGTaGTGTCTTCACCAGCAGGTGCTGCACATCCCTCCA +
Preference number: 6 (lower is better)
Translates to: DFPVARLQMSWP*CLHQQVLHIPP
Trigger: TGGAGGGATGTGCAGCACCTGCTGGTGAAGACATCACGGCCAGCTCATCTGAAGGCGAGCGACTGGAAAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
CDS GCA 72 bp TGTTGGCCGAGGCAGCGACTTCACCCGCACAGCGAGTaGCATGTTTGTTCTCGTTGCTGGCGTCATATCTCG +
Preference number: 6 (lower is better)
Translates to: CWPRQRLHPHSE*HVCSRCWRHIS
Trigger: CGAGATATGACGCCAGCAACGAGAACAAACATGGCACTCGCTGTGCGGGTGAAGTCGCTGCCTCGGCCAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 72 bp CGGCGTGGGTGTGAGATAGAGATTCGGACAACCACATaGTCCAGGTACACCACACGCTGGTCTGAGTGGTCC +
Preference number: 6 (lower is better)
Translates to: RRGCEIEIRTTT*SRYTTRWSEWS
Trigger: GGACCACTCAGACCAGCGTGTGGTGTACCTGGAGCATGTGGTTGTCCGAATCTCTATCTCACACCCACGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 72 bp TCGCAGAAGGTCTCATCGGCATTGCTGCACGTGTGGTaGGTGATGCAGGAGGTTCCCAGCTGTGTGAAGCCG +
Preference number: 6 (lower is better)
Translates to: SQKVSSALLHVW*VMQEVPSCVKP
Trigger: CGGCTTCACACAGCTGGGAACCTCCTGCATCACCAACCACACGTGCAGCAATGCCGATGAGACCTTCTGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp AGAGCTCCAGCATCCGTGAGCGAGACTGATGGGAGCTaGAGGTGCGATATGGGTGCTCTGCGGTGCCATATA +
Preference number: 6 (lower is better)
Translates to: RAPASVSETDGS*RCDMGALRCHI
Trigger: TATATGGCACCGCAGAGCACCCATATCGCACCTTCAGCTCCCATCAGTCTCGCTCACGGATGCTGGAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp GTTCACAGTCCGGAATGCAGCTGCCCCGTGCCAGGCTaGATCCCTCCTTACACACAGTGCACTTCTCAGGTT +
Preference number: 6 (lower is better)
Translates to: VHSPECSCPVPG*IPPYTQCTSQV
Trigger: AACCTGAGAAGTGCACTGTGTGTAAGGAGGGATTCAGCCTGGCACGGGGCAGCTGCATTCCGGACTGTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp GTGCGGCAGCAAAACTGGATGAAGAGCTTCCGTTCGCAGAGCCGATaGGACTTCACCATCTCGCAGAAGGTCTCATCGGCATTGCTGCAC +
Preference number: 6 (lower is better)
Translates to: VRQQNWMKSFRSQSR*DFTISQKVSSALLH
Trigger: GTGCAGCAATGCCGATGAGACCTTCTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAACGGAAGCTCTTCATCCAGTTTTGCTGCCGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp AATCAGGTGGATCTGGAGATCGCCCCGGCGTGGGTGTaGGATAGAGATTCGGACAACCACATGCTCCAGGTA +
Preference number: 6 (lower is better)
Translates to: NQVDLEIAPAWV*DRDSDNHMLQV
Trigger: TACCTGGAGCATGTGGTTGTCCGAATCTCTATCTCACACCCACGCCGGGGCGATCTCCAGATCCACCTGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp CACAGGTCCGGCAGGTGTGATGGCATTCCCCACATTTaGCGAGCTCTGAATCGAAGTAGGTACCCGGTTCAC +
Preference number: 6 (lower is better)
Translates to: HRSGRCDGIPHI*RALNRSRYPVH
Trigger: GTGAACCGGGTACCTACTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCATCACACCTGCCGGACCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp CCACCACATCGGTCACATCGCCGTCCAGCATCCGGATaGCTCCTATCTTTGCATTATATGCGATGCCCACGA +
Preference number: 6 (lower is better)
Translates to: PPHRSHRRPASG*LLSLHYMRCPR
Trigger: TCGTGGGCATCGCATATAATGCAAAGATAGGAGGCATCCGGATGCTGGACGGCGATGTGACCGATGTGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CAA 90 bp TGGACACAGTTCAAGCACTGGTCTGCATTGGGACCATCACAGCCTTaGTCACCACACTCGGGATGGCACACACCTGTGTACTCTTCCTCG +
Preference number: 6 (lower is better)
Translates to: WTQFKHWSALGPSQP*SPHSGWHTPVYSSS
Trigger: CGAGGAAGAGTACACAGGTGTGTGCCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS TCA 72 bp GTAGCCACGCTTCCACGCCGCCTGGACGTTCATCTCTaGCCGACAGCGACTGTTCTTATCAGTACAATGCAT +
Preference number: 6 (lower is better)
Translates to: VATLPRRLDVHL*PTATVLISTMH
Trigger: ATGCATTGTACTGATAAGAACAGTCGCTGTCGGTCAGAGATGAACGTCCAGGCGGCGTGGAAGCGTGGCTAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 72 bp GCATCCGGATGCCTCCTATCTTTGCATTATATGCGATaGCCACGATGCAGTAGGAGTTGTTGGCCGAGGCAG +
Preference number: 6 (lower is better)
Translates to: ASGCLLSLHYMR*PRCSRSCWPRQ
Trigger: CTGCCTCGGCCAACAACTCCTACTGCATCGTGGGCATCGCATATAATGCAAAGATAGGAGGCATCCGGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 72 bp GAGTTCCCCAGGCTGAAGTGGACACAGTTCAAGCACTaGTCTGCATTGGGACCATCACAGCCTTTGTCACCA +
Preference number: 6 (lower is better)
Translates to: EFPRLKWTQFKH*SALGPSQPLSP
Trigger: TGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGTCCACTTCAGCCTGGGGAACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp TTGGGACCATCACAGCCTTTGTCACCACACTCGGGATaGCACACACCTGTGTACTCTTCCTCGTCTTCTGGA +
Preference number: 6 (lower is better)
Translates to: LGPSQPLSPHSG*HTPVYSSSSSG
Trigger: TCCAGAAGACGAGGAAGAGTACACAGGTGTGTGCCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CAA 72 bp TTCAAGCACTGGTCTGCATTGGGACCATCACAGCCTTaGTCACCACACTCGGGATGGCACACACTGGTCTGT +
Preference number: 6 (lower is better)
Translates to: FKHWSALGPSQP*SPHSGWHTLVC
Trigger: ACAGACCAGTGTGTGCCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS CAA 72 bp TTCAAGCACTGGTCTGCATTGGGACCATCACAGCCTTaGTCACCACACTCGGGATGGCACACACCTGTGTAC +
Preference number: 6 (lower is better)
Translates to: FKHWSALGPSQP*SPHSGWHTPVY
Trigger: GTACACAGGTGTGTGCCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098391.11
CDS CAA 90 bp GGAGCCCAGACCTTGGCGACCCTTTTTAATGCCATACTCGAAAGCTaGTTTAGCCAGCCGGCCTGGTCCATCTACTGTCTTTCCGTCATC +
Preference number: 6 (lower is better)
Translates to: GAQTLATLFNAILES*FSQPAWSIYCLSVI
Trigger: GATGACGGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGCATTAAAAAGGGTCGCCAAGGTCTGGGCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp CTCCGGGTAGAAGCCCTCACCGCAGGCCGGCACACATTTCCAGTCTaGGAAGTGGAAGCTTTTTGCACAGTGAATACACTCTTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: LRVEALTAGRHTFPV*EVEAFCTVNTLFSA
Trigger: AGCAGAGAAGAGTGTATTCACTGTGCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGTGCCGGCCTGCGGTGAGGGCTTCTACCCGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp CTGGGTGATTCCTTTCTATGCCGTCATCGAGGATGGTaGCGACCACATTCTTTCCTGTGTAGCCACGCTTCC +
Preference number: 6 (lower is better)
Translates to: LGDSFLCRHRGW*RPHSFLCSHAS
Trigger: GGAAGCGTGGCTACACAGGAAAGAATGTGGTCGTCACCATCCTCGATGACGGCATAGAAAGGAATCACCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS TCA 72 bp GTTCATCCACGCACTTCTGACAGCTCGGGTGGCACCTaGGGCAGAGTCTCTGACTTTCATCAGCATAAAGTC +
Preference number: 6 (lower is better)
Translates to: VHPRTSDSSGGT*GRVSDFHQHKV
Trigger: GACTTTATGCTGATGAAAGTCAGAGACTCTGCCTCAGGTGCCACCCGAGCTGTCAGAAGTGCGTGGATGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS TCA 72 bp GCAGGTGTGATGGCATTCCCCACATTTGACGAGCTCTaGATCGAAGTAGGTACCCGGTTCACAGTCCGGAAT +
Preference number: 6 (lower is better)
Translates to: AGVMAFPTFDEL*IEVGTRFTVRN
Trigger: ATTCCGGACTGTGAACCGGGTACCTACTTCGATTCAGAGCTCGTCAAATGTGGGGAATGCCATCACACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp TGCCTCCTATCTTTGCATTATATGCGATGCCCACGATaGAGTAGGAGTTGTTGGCCGAGGCAGCGACTTCAC +
Preference number: 6 (lower is better)
Translates to: CLLSLHYMRCPR*SRSCWPRQRLH
Trigger: GTGAAGTCGCTGCCTCGGCCAACAACTCCTACTGCATCGTGGGCATCGCATATAATGCAAAGATAGGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 72 bp GTCCAGCATCCGGATGCCTCCTATCTTTGCATTATATaGGATGCCCACGATGCAGTAGGAGTTGTTGGCCGA +
Preference number: 6 (lower is better)
Translates to: VQHPDASYLCII*DAHDAVGVVGR
Trigger: TCGGCCAACAACTCCTACTGCATCGTGGGCATCGCATATAATGCAAAGATAGGAGGCATCCGGATGCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 72 bp GTAGCTTGCATAGGAATCGTAGTTGGGGGCCAGGTCTaGGTGATTCCTTTCTATGCCGTCATCGAGGATGGT +
Preference number: 6 (lower is better)
Translates to: VACIGIVVGGQV*VIPFYAVIEDG
Trigger: ACCATCCTCGATGACGGCATAGAAAGGAATCACCCAGACCTGGCCCCCAACTACGATTCCTATGCAAGCTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 72 bp CACCCGCACAGCGAGTGCCATGTTTGTTCTCGTTGCTaGCGTCATATCTCGGGGATGGGTCATAATCATTTC +
Preference number: 6 (lower is better)
Translates to: HPHSECHVCSRC*RHISGMGHNHF
Trigger: GAAATGATTATGACCCATCCCCGAGATATGACGCCAGCAACGAGAACAAACATGGCACTCGCTGTGCGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS CCA 72 bp AATGCCATACTCGAAAGCTTGTTTAGCCAGCCGGCCTaGTCCATCTACTGTCTTTCCGTCATCATCGGGTCC +
Preference number: 6 (lower is better)
Translates to: NAILESLFSQPA*SIYCLSVIIGS
Trigger: GGACCCGATGATGACGGAAAGACAGTAGATGGACCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp CAGCTTTCCTTGTTTCTCTGGGTTTCGGACCTGCGATaGTATATCCTGCACTTCCAGAGTCCACTCCCCTTC +
Preference number: 6 (lower is better)
Translates to: QLSLFLWVSDLR*YILHFQSPLPF
Trigger: GAAGGGGAGTGGACTCTGGAAGTGCAGGATATACCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 72 bp GAAGCCCTCACCGCAGGCCGGCACACATTTCCAGTCTaGGAAGTGGAAGCTTTTTGCACAGTGAATACACTC +
Preference number: 6 (lower is better)
Translates to: EALTAGRHTFPV*EVEAFCTVNTL
Trigger: GAGTGTATTCACTGTGCAAAAAGCTTCCACTTCCAAGACTGGAAATGTGTGCCGGCCTGCGGTGAGGGCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 72 bp CAAAACTGGATGAAGAGCTTCCGTTCGCAGAGCCGATaGGACTTCACCATCTCGCAGAAGGTCTCATCGGCA +
Preference number: 6 (lower is better)
Translates to: QNWMKSFRSQSR*DFTISQKVSSA
Trigger: TGCCGATGAGACCTTCTGCGAGATGGTGAAGTCCAATCGGCTCTGCGAACGGAAGCTCTTCATCCAGTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 90 bp TGGACACAGTTCAAGCACTGGTCTGCATTGGGACCATCACAGCCTTaGTCACCACACTCGGGATGGCACACACTGGTCTGTAAAGTATTA +
Preference number: 6 (lower is better)
Translates to: WTQFKHWSALGPSQP*SPHSGWHTLVCKVL
Trigger: TAATACTTTACAGACCAGTGTGTGCCATCCCGAGTGTGGTGACAAAGGCTGTGATGGTCCCAATGCAGACCAGTGCTTGAACTGTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS TCA 72 bp CATTTCCAGTCTTGGAAGTGGAAGCTTTTTGCACAGTaGATACACTCTTCTCTGCTGGGCCCCACACAGGTC +
Preference number: 6 (lower is better)
Translates to: HFQSWKWKLFAQ*IHSSLLGPTQV
Trigger: GACCTGTGTGGGGCCCAGCAGAGAAGAGTGTATTCACTGTGCAAAAAGCTTCCACTTCCAAGACTGGAAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS GCA 72 bp GGATGGGTCATAATCATTTCCATTGACATCGTAGCTTaGATAGGAATCGTAGTTGGGGGCCAGGTCTGGGTG +
Preference number: 6 (lower is better)
Translates to: GWVIIISIDIVA*IGIVVGGQVWV
Trigger: CACCCAGACCTGGCCCCCAACTACGATTCCTATGCAAGCTACGATGTCAATGGAAATGATTATGACCCATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS GCA 72 bp TCTTTCAGCTTTCCTTGTTTCTCTGGGTTTCGGACCTaGGATGGTATATCCTGCACTTCCAGAGTCCACTCC +
Preference number: 6 (lower is better)
Translates to: SFSFPCFSGFRT*DGISCTSRVHS
Trigger: GGAGTGGACTCTGGAAGTGCAGGATATACCATCGCAGGTCCGAAACCCAGAGAAACAAGGAAAGCTGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CAA 72 bp ACCTTGGCGACCCTTTTTAATGCCATACTCGAAAGCTaGTTTAGCCAGCCGGCCTGGTCCATCTACTGTCTT +
Preference number: 6 (lower is better)
Translates to: TLATLFNAILES*FSQPAWSIYCL
Trigger: AAGACAGTAGATGGACCAGGCCGGCTGGCTAAACAAGCTTTCGAGTATGGCATTAAAAAGGGTCGCCAAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2
CDS CCA 72 bp TGGCACACACTGGTCTGTAAAGTATTAGGAGAGCCTTaGATGGAAGGAGCTGTGTACTCTTCCTCGTCTTCT +
Preference number: 6 (lower is better)
Translates to: WHTLVCKVLGEP*MEGAVYSSSSS
Trigger: AGAAGACGAGGAAGAGTACACAGCTCCTTCCATCCAAGGCTCTCCTAATACTTTACAGACCAGTGTGTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055576.12
ENSMUST00000176209.2
CDS TCA 72 bp CGTCATATCTCGGGGATGGGTCATAATCATTTCCATTaGCATCGTAGCTTGCATAGGAATCGTAGTTGGGGG +
Preference number: 6 (lower is better)
Translates to: RHISGMGHNHFH*HRSLHRNRSWG
Trigger: CCCCCAACTACGATTCCTATGCAAGCTACGATGTCAATGGAAATGATTATGACCCATCCCCGAGATATGACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176199.8
ENSMUST00000176209.2
CDS TCA 72 bp AGGTGCGATATGGGTGCTCTGCGGTGCCATATAAAATaGGGCTCCATTCTTTCAGCTTTCCTTGTTTCTCTG +
Preference number: 6 (lower is better)
Translates to: RCDMGALRCHIK*GSILSAFLVSL
Trigger: CAGAGAAACAAGGAAAGCTGAAAGAATGGAGCCTCATTTTATATGGCACCGCAGAGCACCCATATCGCACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055576.12
ENSMUST00000098391.11
ENSMUST00000176209.2