RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCSK1N (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039278

Ensembl transcript IDs: ENSMUST00000041096.4

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAACAAGCCTGGTCCTGGCAGACCACGAGTGAATCCATAGCCCCTTaGCTAAGTGCTGTGGACCCCTGGCAGACGCTGAAAGTAACCTCA +
Preference number: 1 (lower is better)
Translates to: QQAWSWQTTSESIAP*LSAVDPWQTLKVTS
Trigger: TGAGGTTACTTTCAGCGTCTGCCAGGGGTCCACAGCACTTAGCCAAGGGGCTATGGATTCACTCGTGGTCTGCCAGGACCAGGCTTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 90 bp GCACATACTGAGAATAGAACAAGTGGCCAGGGCAAAGGCAATGGTTaGAGTGAATATTCAGAGCCCCGTGTAAGCAGTGCTTGGCAGTTG +
Preference number: 1 (lower is better)
Translates to: AHTENRTSGQGKGNG*SEYSEPRVSSAWQL
Trigger: CAACTGCCAAGCACTGCTTACACGGGGCTCTGAATATTCACTCCAACCATTGCCTTTGCCCTGGCCACTTGTTCTATTCTCAGTATGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CAA 90 bp GTTGCTGGGGTAAGCAGCCTTGGACGTGCTGGCAGGGAGTCAGGGTaGCTGGGGCGCTCCTGGGTTCCAGGGCGTGCAGGATGCAGCAGC +
Preference number: 2 (lower is better)
Translates to: VAGVSSLGRAGRESG*LGRSWVPGRAGCSS
Trigger: GCTGCTGCATCCTGCACGCCCTGGAACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGCCAGCACGTCCAAGGCTGCTTACCCCAGCAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR GCA 90 bp CAGCTCTCAGGGAAGCAGGCAGATGAATCTCTGAGTTTGAGGCTAGCCTGGTGTGCAGGGAGTCAGGGTTaGTGGGGCGCTCCTGGGTTC +
Preference number: 2 (lower is better)
Translates to: QLSGKQADESLSLRLAWCAGSQG*WGAPGF
Trigger: GAACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGC...ACACCAGGCTAGCCTCAAACTCAGAGATTCATCTGCCTGCTTCCCTGAGAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR CCA 90 bp CTTGCCTTTTCTGGAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGACAGCCTTGGACGTGCTaGCAGGGAGTCAGGGTTGCT +
Preference number: 2 (lower is better)
Translates to: LAFSGDRFLLCSPAGSSRQPWTC*QGVRVA
Trigger: AGCAACCCTGACTCCCTGCCAGCACGTCCAAGGCTG...TCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTCCAGAAAAGGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR CCA 90 bp CTTGCCTTTTCTGGAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGACAACAAGCCTGGTCCTaGCAGACCACGAGTGAATCC +
Preference number: 2 (lower is better)
Translates to: LAFSGDRFLLCSPAGSSRQQAWS*QTTSES
Trigger: GGATTCACTCGTGGTCTGCCAGGACCAGGCTTGTTG...TCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTCCAGAAAAGGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR TCA 90 bp CTTGCCTTTTCTGGAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGAACAGATGGCATTTATTaGGGGCTCAGGGGATGGGAG +
Preference number: 2 (lower is better)
Translates to: LAFSGDRFLLCSPAGSSRTDGIY*GLRGWE
Trigger: CTCCCATCCCCTGAGCCCTCAATAAATGCCATCTGT...TCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTCCAGAAAAGGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR GCA 90 bp GAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGAGATCTTCCAGGATAGATTTACCTGCCACTaGCTCCAGTGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: ETGSYYVAPLEVQEIFQDRFTCH*LQCAGI
Trigger: AATCCCAGCACACTGGAGGCAGTGGCAGGTAAATCT...ATCCTGGAAGATCTCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR GCA 90 bp TTACGTGGTAACATGGGACATCCCTCATTGACTGTGTTTTATGAAACTCTATGCAAGCAGCCTTGGACGTaGTGGCAGGGAGTCAGGGTT +
Preference number: 2 (lower is better)
Translates to: LRGNMGHPSLTVFYETLCKQPWT*WQGVRV
Trigger: AACCCTGACTCCCTGCCAGCACGTCCAAGGCTGCTT...GCATAGAGTTTCATAAAACACAGTCAATGAGGGATGTCCCATGTTACCACGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR GCA 90 bp GGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGAGATCTTCCAGGATAGCCAGGCTCAGACAAACAGCTaGTACAGATGGCATTTATTG +
Preference number: 2 (lower is better)
Translates to: GSYYVAPLEVQEIFQDSQAQTNS*YRWHLL
Trigger: CAATAAATGCCATCTGTAGCAGCTGTTTGTCTGAGC...CTGGCTATCCTGGAAGATCTCTTGAACTTCCAGCGGGGCTACATAGTAAGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR TCA 90 bp CAACACAAGACAGTGACAGGAAGGGTAAGAAAGGACTATGAAGTGCAAAAACTTGTGCTTGGCAGTTGCTaGTACAGTGCTGGATGTCTG +
Preference number: 2 (lower is better)
Translates to: QHKTVTGRVRKDYEVQKLVLGSC*YSAGCL
Trigger: CAGACATCCAGCACTGTATCAGCAACTGCCAAGCAC...AAGTTTTTGCACTTCATAGTCCTTTCTTACCCTTCCTGTCACTGTCTTGTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR CCA 90 bp AACAAACAAAACAACCTCCTTCCTTGTCCAACACAAGACAGTGACAGGAAGGGTGGCAAAGGCAATGGTTaGAGTGAATATTCAGAGCCC +
Preference number: 2 (lower is better)
Translates to: NKQNNLLPCPTQDSDRKGGKGNG*SEYSEP
Trigger: GGGCTCTGAATATTCACTCCAACCATTGCCTTTGCC...ACCCTTCCTGTCACTGTCTTGTGTTGGACAAGGAAGGAGGTTGTTTTGTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR TCA 90 bp GAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGAGATCTTCCAGGATGGTAAGAAAGGACTATaGAGTGCAAAAACTTGCACA +
Preference number: 2 (lower is better)
Translates to: ETGSYYVAPLEVQEIFQDGKKGL*SAKTCT
Trigger: TGTGCAAGTTTTTGCACTTCATAGTCCTTTCTTACC...ATCCTGGAAGATCTCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR CCA 90 bp AACAAACAAAACAACCTCCTTCCTTGTCCAACACAAGACAGTGACAGGAAGGGTAACAGCTGCTACAGATaGCATTTATTGAGGGCTCAG +
Preference number: 2 (lower is better)
Translates to: NKQNNLLPCPTQDSDRKGNSCYR*HLLRAQ
Trigger: CTGAGCCCTCAATAAATGCCATCTGTAGCAGCTGTT...ACCCTTCCTGTCACTGTCTTGTGTTGGACAAGGAAGGAGGTTGTTTTGTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp GCAGCCTTGGACGTGCTGGCAGGGAGTCAGGGTTGCTaGGGCGCTCCTGGGTTCCAGGGCGTGCAGGATGCA +
Preference number: 3 (lower is better)
Translates to: AALDVLAGSQGC*GAPGFQGVQDA
Trigger: TGCATCCTGCACGCCCTGGAACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGCCAGCACGTCCAAGGCTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR GCA 72 bp GGGATGGGAGGTTGCTGGGGTAAGCAGCCTTGGACGTaGTGGCAGGGAGTCAGGGTTGCTGGGGCGCTCCTG +
Preference number: 3 (lower is better)
Translates to: GMGGCWGKQPWT*WQGVRVAGALL
Trigger: CAGGAGCGCCCCAGCAACCCTGACTCCCTGCCAGCACGTCCAAGGCTGCTTACCCCAGCAACCTCCCATCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp GTGATCCACCTGGGGCCCTCACAACAAGCCTGGTCCTaGCAGACCACGAGTGAATCCATAGCCCCTTGGCTA +
Preference number: 3 (lower is better)
Translates to: VIHLGPSQQAWS*QTTSESIAPWL
Trigger: TAGCCAAGGGGCTATGGATTCACTCGTGGTCTGCCAGGACCAGGCTTGTTGTGAGGGCCCCAGGTGGATCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp GAATCCATAGCCCCTTGGCTAAGTGCTGTGGACCCCTaGCAGACGCTGAAAGTAACCTCAGAGCCTCCCAGG +
Preference number: 3 (lower is better)
Translates to: ESIAPWLSAVDP*QTLKVTSEPPR
Trigger: CCTGGGAGGCTCTGAGGTTACTTTCAGCGTCTGCCAGGGGTCCACAGCACTTAGCCAAGGGGCTATGGATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp TGGTCCTGGCAGACCACGAGTGAATCCATAGCCCCTTaGCTAAGTGCTGTGGACCCCTGGCAGACGCTGAAA +
Preference number: 3 (lower is better)
Translates to: WSWQTTSESIAP*LSAVDPWQTLK
Trigger: TTTCAGCGTCTGCCAGGGGTCCACAGCACTTAGCCAAGGGGCTATGGATTCACTCGTGGTCTGCCAGGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR-3UTR CAA 90 bp GAGACAGGTTCTTACTATGTAGCCCCGCTGGAAGTTCAAGAGATCTTCCAGGATGGCAGGGAGTCAGGGTaGCTGGGGCGCTCCTGGGTT +
Preference number: 3 (lower is better)
Translates to: ETGSYYVAPLEVQEIFQDGRESG*LGRSWV
Trigger: AACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGCC...ATCCTGGAAGATCTCTTGAACTTCCAGCGGGGCTACATAGTAAGAACCTGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR GCA 72 bp ACCGGCCCCCTAGTACAGGGCGCTCAGACAAACAGCTaGTACAGATGGCATTTATTGAGGGCTCAGGGGATG +
Preference number: 3 (lower is better)
Translates to: TGPLVQGAQTNS*YRWHLLRAQGM
Trigger: CATCCCCTGAGCCCTCAATAAATGCCATCTGTAGCAGCTGTTTGTCTGAGCGCCCTGTACTAGGGGGCCGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR GCA 72 bp CCCCGTGTAAGCAGTGCTTGGCAGTTGCTGATACAGTaGTGGATGTCTGTGATCCACCTGGGGCCCTCACAA +
Preference number: 3 (lower is better)
Translates to: PRVSSAWQLLIQ*WMSVIHLGPSQ
Trigger: TTGTGAGGGCCCCAGGTGGATCACAGACATCCAGCACTGTATCAGCAACTGCCAAGCACTGCTTACACGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp CTAGTACAGGGCGCTCAGACAAACAGCTGCTACAGATaGCATTTATTGAGGGCTCAGGGGATGGGAGGTTGC +
Preference number: 3 (lower is better)
Translates to: LVQGAQTNSCYR*HLLRAQGMGGC
Trigger: GCAACCTCCCATCCCCTGAGCCCTCAATAAATGCCATCTGTAGCAGCTGTTTGTCTGAGCGCCCTGTACTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR TCA 72 bp TCACCTTTAATCCCAGCTCTCAGGGAAGCAGGCAGATaGATCTCTGAGTTTGAGGCTAGCCTGGTGTACCGA +
Preference number: 3 (lower is better)
Translates to: SPLIPALREAGR*ISEFEASLVYR
Trigger: TCGGTACACCAGGCTAGCCTCAAACTCAGAGATTCATCTGCCTGCTTCCCTGAGAGCTGGGATTAAAGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CCA 72 bp GAGAATAGAACAAGTGGCCAGGGCAAAGGCAATGGTTaGAGTGAATATTCAGAGCCCCGTGTAAGCAGTGCT +
Preference number: 3 (lower is better)
Translates to: ENRTSGQGKGNG*SEYSEPRVSSA
Trigger: AGCACTGCTTACACGGGGCTCTGAATATTCACTCCAACCATTGCCTTTGCCCTGGCCACTTGTTCTATTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR TCA 72 bp GAATCTCTGAGTTTGAGGCTAGCCTGGTGTACCGAGTaGGTTTCAGGACAACCAGGATTACATAGTAAGACT +
Preference number: 3 (lower is better)
Translates to: ESLSLRLAWCTE*VSGQPGLHSKT
Trigger: AGTCTTACTATGTAATCCTGGTTGTCCTGAAACTCACTCGGTACACCAGGCTAGCCTCAAACTCAGAGATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR TCA 72 bp GTGAGAAGTTACGTGGTAACATGGGACATCCCTCATTaGCTGTGTTTTATGAAACTCTATGCAAAATTAAAT +
Preference number: 3 (lower is better)
Translates to: VRSYVVTWDIPH*LCFMKLYAKLN
Trigger: ATTTAATTTTGCATAGAGTTTCATAAAACACAGTCAATGAGGGATGTCCCATGTTACCACGTAACTTCTCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR CCA 90 bp CGTGCTGGCAGGGAGTCAGGGTTGCTGGGGCGCTCCTGGGTTCCAGGGCGTGCAGCCTCGCTGACAGGGTaGGGGGCAGCCTCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: RAGRESGLLGRSWVPGRAASLTG*GAASEG
Trigger: GCCTTCTGAGGCTGCCCCCCACCCTGTCAGCGAGGC...TGCACGCCCTGGAACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGCCAGCACG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CAA 72 bp GTAAGCAGCCTTGGACGTGCTGGCAGGGAGTCAGGGTaGCTGGGGCGCTCCTGGGTTCCAGGGCGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: VSSLGRAGRESG*LGRSWVPGRAG
Trigger: TCCTGCACGCCCTGGAACCCAGGAGCGCCCCAGCAACCCTGACTCCCTGCCAGCACGTCCAAGGCTGCTTAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR GCA 90 bp ACAAACAGCTGCTACAGATGGCATTTATTGAGGGCTCAGGGGATGGGAGGTTGCGCAGCAGCACCAAAATaGCGACGCCCCCGGCCCGCG +
Preference number: 4 (lower is better)
Translates to: TNSCYRWHLLRAQGMGGCAAAPK*RRPRPA
Trigger: CGCGGGCCGGGGGCGTCGGCATTTTGGTGCTGCTGC...GCAACCTCCCATCCCCTGAGCCCTCAATAAATGCCATCTGTAGCAGCTGTTTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR GCA 90 bp GTACAGGTCCCAAACAGTACTGTGCTGTCCTCAGTAGGACAGCCACTATTCCATCAGGCGCGCAGCAGCTaGGCCAGGACACGCGCCTGC +
Preference number: 4 (lower is better)
Translates to: VQVPNSTVLSSVGQPLFHQARSS*ARTRAC
Trigger: GCAGGCGCGTGTCCTGGCGCAGCTGCTGCGCGCCTG...ATGGAATAGTGGCTGTCCTACTGAGGACAGCACAGTACTGTTTGGGACCTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR CCA 90 bp GAATATTCAGAGCCCCGTGTAAGCAGTGCTTGGCAGTTGCTGATACAGTGCTGGGCCATCATCATACACTaGGGGCCGGGGTCGCGGCGC +
Preference number: 4 (lower is better)
Translates to: EYSEPRVSSAWQLLIQCWAIIIH*GPGSRR
Trigger: GCGCCGCGACCCCGGCCCCCAGTGTATGATGATGGC...CCAGCACTGTATCAGCAACTGCCAAGCACTGCTTACACGGGGCTCTGAATATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR CCA 90 bp GTCCTCAGTAGGACAGCCACTATTCCATTATCATTGTCACCCAGCCCACCGGCCGGCAGGAGCAGCCTCTaGCTCCGAACTTCCGGTGAG +
Preference number: 4 (lower is better)
Translates to: VLSRTATIPLSLSPSPPAGRSSL*LRTSGE
Trigger: CTCACCGGAAGTTCGGAGCCAGAGGCTGCTCCTGCC...GGCCGGTGGGCTGGGTGACAATGATAATGGAATAGTGGCTGTCCTACTGAGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
3UTR CAA 72 bp GGTGAGAAGTTACGTGGTAACATGGGACATCCCTCATaGACTGTGTTTTATGAAACTCTATGCAAAATTAAA +
Preference number: 4 (lower is better)
Translates to: GEKLRGNMGHPS*TVFYETLCKIK
Trigger: TTTAATTTTGCATAGAGTTTCATAAAACACAGTCAATGAGGGATGTCCCATGTTACCACGTAACTTCTCACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS GCA 90 bp CCGCCGCCTCTCCTCGGGGCACGGCCCGACGCAAGCGGAGGGGAGTaGTCGTCTCAACCAAGGGCGCGGATGCTGCGCTCAGACTGCGGG +
Preference number: 5 (lower is better)
Translates to: PPPLLGARPDASGGE*SSQPRARMLRSDCG
Trigger: CCCGCAGTCTGAGCGCAGCATCCGCGCCCTTGGTTGAGACGAGCACTCCCCTCCGCTTGCGTCGGGCCGTGCCCCGAGGAGAGGCGGCGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS CCA 90 bp CCACGTCAGGAGTCTCGTCGCCGGCATCCTCGACGTCTGGGCCAGTaGGGCCATCATCATACACTGGGGGCCGGGGTCGCGGCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: PRQESRRRHPRRLGQ*GHHHTLGAGVAAQR
Trigger: CCGCTGCGCCGCGACCCCGGCCCCCAGTGTATGATGATGGCCCCACTGGCCCAGACGTCGAGGATGCCGGCGACGAGACTCCTGACGTGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS TCA 90 bp GGAGGCGGCGCGGGGCAGGAGCAGCCTCTGGCTCCGAACTTCCGGTaGGGATCCGCCCTAGCAAGTACCTCAGCAGCTCAGGGTCCACGT +
Preference number: 5 (lower is better)
Translates to: GGGAGQEQPLAPNFR*GSALASTSAAQGPR
Trigger: ACGTGGACCCTGAGCTGCTGAGGTACTTGCTAGGGCGGATCCTCACCGGAAGTTCGGAGCCAGAGGCTGCTCCTGCCCCGCGCCGCCTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS-3UTR CAA 90 bp GTACAGGTCCCAAACAGTACTGTGCTGTCCTCAGTAGGACAGCCACTATTCCATAGGGGCGGGGACAAGTaGGGCTGCCAGGGCGGCCGG +
Preference number: 5 (lower is better)
Translates to: VQVPNSTVLSSVGQPLFHRGGDK*GCQGGR
Trigger: CCGGCCGCCCTGGCAGCCCAACTTGTCCCCGCCCCT...ATGGAATAGTGGCTGTCCTACTGAGGACAGCACAGTACTGTTTGGGACCTGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS GCA 72 bp GCACGCGCGCGTTCCTGTCTCTCGGCCTCCAGCAGGTaGGCCAGCGCCCGCGCCAGCTCCTGCACCGCACCC +
Preference number: 6 (lower is better)
Translates to: ARARSCLSASSR*ASARASSCTAP
Trigger: GGGTGCGGTGCAGGAGCTGGCGCGGGCGCTGGCGCACCTGCTGGAGGCCGAGAGACAGGAACGCGCGCGTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS TCA 72 bp CAGGCGCGCAGCAGCTGCGCCAGGACACGCGCCTGCTaGTCCTCAGCCTCCTGCGCCTCAGCACGCGCGCGT +
Preference number: 6 (lower is better)
Translates to: QARSSCARTRAC*SSASCASARAR
Trigger: ACGCGCGCGTGCTGAGGCGCAGGAGGCTGAGGATCAGCAGGCGCGTGTCCTGGCGCAGCTGCTGCGCGCCTG
74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS CCA 72 bp GCGAGCTCGGAGCAGAGCACGGGCGAGCTGTGCAGCTaGAGCGTCCGGGTCATCGTCGGGGGCCAAGGGCGG +
Preference number: 6 (lower is better)
Translates to: ASSEQSTGELCS*SVRVIVGGQGR
Trigger: CCGCCCTTGGCCCCCGACGATGACCCGGACGCTCCAGCTGCACAGCTCGCCCGTGCTCTGCTCCGAGCTCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS GCA 72 bp CTCCTCGGGGCACGGCCCGACGCAAGCGGAGGGGAGTaGTCGTCTCAACCAAGGGCGCGGATGCTGCGCTCA +
Preference number: 6 (lower is better)
Translates to: LLGARPDASGGE*SSQPRARMLRS
Trigger: TGAGCGCAGCATCCGCGCCCTTGGTTGAGACGAGCACTCCCCTCCGCTTGCGTCGGGCCGTGCCCCGAGGAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS CCA 72 bp AGTACGTTCTCAGGGGGCACCTCGGGACCCAAATCCTaGTCCACAGATCGGCGGAGGCGGCGCGGGGCAGGA +
Preference number: 6 (lower is better)
Translates to: STFSGGTSGPKS*STDRRRRRGAG
Trigger: TCCTGCCCCGCGCCGCCTCCGCCGATCTGTGGACCAGGATTTGGGTCCCGAGGTGCCCCCTGAGAACGTACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS CCA 72 bp CACGTCAGGAGTCTCGTCGCCGGCATCCTCGACGTCTaGGCCAGTGGGGCCATCATCATACACTGGGGGCCG +
Preference number: 6 (lower is better)
Translates to: HVRSLVAGILDV*ASGAIIIHWGP
Trigger: CGGCCCCCAGTGTATGATGATGGCCCCACTGGCCCAGACGTCGAGGATGCCGGCGACGAGACTCCTGACGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4
CDS TCA 72 bp GCGGGGCAGGAGCAGCCTCTGGCTCCGAACTTCCGGTaGGGATCCGCCCTAGCAAGTACCTCAGCAGCTCAG +
Preference number: 6 (lower is better)
Translates to: AGQEQPLAPNFR*GSALASTSAAQ
Trigger: CTGAGCTGCTGAGGTACTTGCTAGGGCGGATCCTCACCGGAAGTTCGGAGCCAGAGGCTGCTCCTGCCCCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041096.4