RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PCP4L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038370

Ensembl transcript IDs: ENSMUST00000111332.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTGCCTTCCAAGGTCTGGGACTAAAGGCATGCACCCCACATTTTaGAAGCTCCTGGATTTAGGTCAGCCCGGGAGAAAGTGCAGCTGC +
Preference number: 1 (lower is better)
Translates to: LCLPRSGTKGMHPTF*KLLDLGQPGRKCSC
Trigger: GCAGCTGCACTTTCTCCCGGGCTGACCTAAATCCAGGAGCTTGCAAAATGTGGGGTGCATGCCTTTAGTCCCAGACCTTGGAAGGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR TCA 90 bp ACGGGAGATGGGAGGAGTTGTGCAGAGGGAGCTGAAAGTGTTGCCTaGAGTGTTAATGGTGCAACTGGCAGAAGCCTACATGTGCCCCAC +
Preference number: 1 (lower is better)
Translates to: TGDGRSCAEGAESVA*SVNGATGRSLHVPH
Trigger: GTGGGGCACATGTAGGCTTCTGCCAGTTGCACCATTAACACTTCAGGCAACACTTTCAGCTCCCTCTGCACAACTCCTCCCATCTCCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 90 bp GATGTCAACCAGGCTGGCTCGAACATACAGAGATCCACCTGCCTCTaGCTTCCAAGGTCTGGGACTAAAGGCATGCACCCCACATTTTGC +
Preference number: 1 (lower is better)
Translates to: DVNQAGSNIQRSTCL*LPRSGTKGMHPTFC
Trigger: GCAAAATGTGGGGTGCATGCCTTTAGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCTCTGTATGTTCGAGCCAGCCTGGTTGACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 90 bp ACTCATGATGTCAACCAGGCTGGCTCGAACATACAGAGATCCACCTaGCTCTGCCTTCCAAGGTCTGGGACTAAAGGCATGCACCCCACA +
Preference number: 1 (lower is better)
Translates to: THDVNQAGSNIQRST*LCLPRSGTKGMHPT
Trigger: TGTGGGGTGCATGCCTTTAGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCTCTGTATGTTCGAGCCAGCCTGGTTGACATCATGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CCA 90 bp AAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGTaGCTGAGAGCTATAGGGGTGTCACTTGGTTCACATGGCTCTAGG +
Preference number: 1 (lower is better)
Translates to: KVTYSGDVCPDSTVG*LRAIGVSLGSHGSR
Trigger: CCTAGAGCCATGTGAACCAAGTGACACCCCTATAGCTCTCAGCCACCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 90 bp GTCATCATTATTAAACATGCTAAAGTCACATACAGTGGCGATGTTTaGCCTGACTCCACAGTGGGGTGGCTGAGAGCTATAGGGGTGTCA +
Preference number: 1 (lower is better)
Translates to: VIIIKHAKVTYSGDV*PDSTVGWLRAIGVS
Trigger: TGACACCCCTATAGCTCTCAGCCACCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATGATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 90 bp TCTACCAGCCCCAGTTCTCTTTCCTTGGGAGGAATCTACTCAGCATaGACTAGTGTAGTAAGCCGCCTTATTTATTTATTTATTTATATT +
Preference number: 1 (lower is better)
Translates to: STSPSSLSLGGIYSA*TSVVSRLIYLFIYI
Trigger: AATATAAATAAATAAATAAATAAGGCGGCTTACTACACTAGTGCATGCTGAGTAGATTCCTCCCAAGGAAAGAGAACTGGGGCTGGTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CCA 90 bp CCCCACCTTGAGGCTCTGCACTCTGAGGGCTTGCCCCCTCCTGCCCTTAGCATTAGGTTAAGCTTGCCTTaGGGAGAGGCTAGAGGGATG +
Preference number: 2 (lower is better)
Translates to: PHLEALHSEGLPPPALSIRLSLP*GEARGM
Trigger: CATCCCTCTAGCCTCTCCCCAAGGCAAGCTTAACCT...AATGCTAAGGGCAGGAGGGGGCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 90 bp GAAGTGTTAATGGTGCAACTGGCAGAAGCCTACATGTGCCCCACCTaGAGGCTCTGCACTCTGAGGGCTTGCCCCCTCCTGCCCTTAGCA +
Preference number: 2 (lower is better)
Translates to: EVLMVQLAEAYMCPT*RLCTLRACPLLPLA
Trigger: TGCTAAGGGCAGGAGGGGGCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGGCACATGTAGGCTTCTGCCAGTTGCACCATTAACACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp CTGAACCTTCTGCCATCACTGGCTCTTCTGACCTCAGTCTGGATGGTGAAGGAACCCACCTTGAGGCTCTaGACTCTGAGGGCTTGCCCC +
Preference number: 2 (lower is better)
Translates to: LNLLPSLALLTSVWMVKEPTLRL*TLRACP
Trigger: GGGGCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGG...TTCCTTCACCATCCAGACTGAGGTCAGAAGAGCCAGTGATGGCAGAAGGTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp ACATTTTGCAAGCTCCTGGATTTAGGTCAGCCCGGGAGAAAGTGCAGCTGCACTTGCACTCTGAGGGCTTaGCCCCTCCTGCCCTTAGCA +
Preference number: 2 (lower is better)
Translates to: TFCKLLDLGQPGRKCSCTCTLRA*PLLPLA
Trigger: TGCTAAGGGCAGGAGGGGGCAAGCCCTCAGAGTGCA...AGTGCAGCTGCACTTTCTCCCGGGCTGACCTAAATCCAGGAGCTTGCAAAATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp TTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTTCTGACAGATCCACCTGCCTCTaGCTTCCAAGGTCTGGGACT +
Preference number: 2 (lower is better)
Translates to: FISRPVVPEPSAITGSSDRSTCL*LPRSGT
Trigger: AGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCT...GTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 90 bp GGAAGCTCTTCCTCCCTTGCCTCTACCAGCCCCAGTTCTCTTTCCTaGGGAGGAATCTACTCAGCATGCACTAGTGTAGTAAGCCGCCTT +
Preference number: 2 (lower is better)
Translates to: GSSSSLASTSPSSLS*GGIYSACTSVVSRL
Trigger: AAGGCGGCTTACTACACTAGTGCATGCTGAGTAGATTCCTCCCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 90 bp GCTCTTCTGACCTCAGTCTGGATGGTGAAGGAAGCTCTTCCTCCCTaGCCTCTACCAGCCCCAGTTCTCTTTCCTTGGGAGGAATCTACT +
Preference number: 2 (lower is better)
Translates to: ALLTSVWMVKEALPP*PLPAPVLFPWEEST
Trigger: AGTAGATTCCTCCCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTTCCTTCACCATCCAGACTGAGGTCAGAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR TCA 90 bp TTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTTCTGACGAGAGGCTAGAGGGATaGAGGAATGAGATACGTGAG +
Preference number: 2 (lower is better)
Translates to: FISRPVVPEPSAITGSSDERLEG*RNEIRE
Trigger: CTCACGTATCTCATTCCTTCATCCCTCTAGCCTCTC...GTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp TTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTTCTGACACCTTCGCATCCTTGTaGCTCTACTACTGTGATGGC +
Preference number: 2 (lower is better)
Translates to: FISRPVVPEPSAITGSSDTFASL*LYYCDG
Trigger: GCCATCACAGTAGTAGAGGCACAAGGATGCGAAGGT...GTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 90 bp GAAACACGGGAGATGGGAGGAGTTGTGCAGAGGGAGCTGAAAGTGTaGCCTGAAGTGTTAATGGTGCAACTGGCAGAAGCCTACATGTGC +
Preference number: 2 (lower is better)
Translates to: ETREMGGVVQRELKV*PEVLMVQLAEAYMC
Trigger: GCACATGTAGGCTTCTGCCAGTTGCACCATTAACACTTCAGGCAACACTTTCAGCTCCCTCTGCACAACTCCTCCCATCTCCCGTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp TTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTTCTGACGGAATCTACTCAGCATaGACTAGTGTAGTAAGCCGC +
Preference number: 2 (lower is better)
Translates to: FISRPVVPEPSAITGSSDGIYSA*TSVVSR
Trigger: GCGGCTTACTACACTAGTGCATGCTGAGTAGATTCC...GTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR GCA 90 bp AAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGAAGCTCTTCCTCCCTTaGCTCTACCAGCCCCAGTTC +
Preference number: 2 (lower is better)
Translates to: KHAKVTYSGDVCPDSTVGKLFLP*LYQPQF
Trigger: GAACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTT...CCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CCA 90 bp AAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGCTGAAACACGGGAGATaGGAGGAGTTGTGCAGAGGG +
Preference number: 2 (lower is better)
Translates to: KHAKVTYSGDVCPDSTVGLKHGR*EELCRG
Trigger: CCCTCTGCACAACTCCTCCCATCTCCCGTGTTTCAG...CCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR TCA 90 bp CTCGTTCTGCTTTCCTTCCTAAACGTTTCTCAGTTTTCATTTCCCGGCCTGTCGTTGTGCAGAGGGAGCTaGAAGTGTTGCCTGAAGTGT +
Preference number: 2 (lower is better)
Translates to: LVLLSFLNVSQFSFPGLSLCRGS*KCCLKC
Trigger: ACACTTCAGGCAACACTTTCAGCTCCCTCTGCACAA...CGACAGGCCGGGAAATGAAAACTGAGAAACGTTTAGGAAGGAAAGCAGAACGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CCA 90 bp TCTCGTTCTGCTTTCCTTCCTAAACGTTTCTCAGTTTTCATTTCCCGGCCTGTCCCAGTTCTCTTTCCTTaGGAGGAATCTACTCAGCAT +
Preference number: 2 (lower is better)
Translates to: SRSAFLPKRFSVFISRPVPVLFP*EESTQH
Trigger: ATGCTGAGTAGATTCCTCCCAAGGAAAGAGAACTGG...GACAGGCCGGGAAATGAAAACTGAGAAACGTTTAGGAAGGAAAGCAGAACGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp CTGGCAGAAGCCTACATGTGCCCCACCTTGAGGCTCTaGACTCTGAGGGCTTGCCCCCTCCTGCCCTTAGCA +
Preference number: 3 (lower is better)
Translates to: LAEAYMCPTLRL*TLRACPLLPLA
Trigger: TGCTAAGGGCAGGAGGGGGCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGGCACATGTAGGCTTCTGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp CAGGCTGGCTCGAACATACAGAGATCCACCTGCCTCTaGCTTCCAAGGTCTGGGACTAAAGGCATGCACCCC +
Preference number: 3 (lower is better)
Translates to: QAGSNIQRSTCL*LPRSGTKGMHP
Trigger: GGGGTGCATGCCTTTAGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCTCTGTATGTTCGAGCCAGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp TGCAAGCTCCTGGATTTAGGTCAGCCCGGGAGAAAGTaGAGCTGCACTAGGGCTGAAACACGGGAGATGGGA +
Preference number: 3 (lower is better)
Translates to: CKLLDLGQPGRK*SCTRAETREMG
Trigger: TCCCATCTCCCGTGTTTCAGCCCTAGTGCAGCTGCACTTTCTCCCGGGCTGACCTAAATCCAGGAGCTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp GAAGTGTTAATGGTGCAACTGGCAGAAGCCTACATGTaGCCCACCTTGAGGCTCTGCACTCTGAGGGCTTGC +
Preference number: 3 (lower is better)
Translates to: EVLMVQLAEAYM*PTLRLCTLRAC
Trigger: GCAAGCCCTCAGAGTGCAGAGCCTCAAGGTGGGGCACATGTAGGCTTCTGCCAGTTGCACCATTAACACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp GTCAACCAGGCTGGCTCGAACATACAGAGATCCACCTaGCTCTGCCTTCCAAGGTCTGGGACTAAAGGCATG +
Preference number: 3 (lower is better)
Translates to: VNQAGSNIQRST*LCLPRSGTKGM
Trigger: CATGCCTTTAGTCCCAGACCTTGGAAGGCAGAGGCAGGTGGATCTCTGTATGTTCGAGCCAGCCTGGTTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp CCAAGGTCTGGGACTAAAGGCATGCACCCCACATTTTaGAAGCTCCTGGATTTAGGTCAGCCCGGGAGAAAG +
Preference number: 3 (lower is better)
Translates to: PRSGTKGMHPTF*KLLDLGQPGRK
Trigger: CTTTCTCCCGGGCTGACCTAAATCCAGGAGCTTGCAAAATGTGGGGTGCATGCCTTTAGTCCCAGACCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CAA 90 bp AAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGGAAGCTCTTCCTCCCTaGCCTCTACCAGCCCCAGTT +
Preference number: 3 (lower is better)
Translates to: KHAKVTYSGDVCPDSTVGEALPP*PLPAPV
Trigger: AACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTTC...CCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CAA 90 bp AAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGCATGCACCCCACATTTaGCAAGCTCCTGGATTTAGG +
Preference number: 3 (lower is better)
Translates to: KHAKVTYSGDVCPDSTVGHAPHI*QAPGFR
Trigger: CCTAAATCCAGGAGCTTGCAAAATGTGGGGTGCATG...CCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR GCA 72 bp ATTAAACATGCTAAAGTCACATACAGTGGCGATGTTTaGCCTGACTCCACAGTGGGGTGGCTGAGAGCTATA +
Preference number: 3 (lower is better)
Translates to: IKHAKVTYSGDV*PDSTVGWLRAI
Trigger: TATAGCTCTCAGCCACCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR-3UTR CAA 90 bp TCATTATTAAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCAAGGGAGCTGAAAGTGTaGCCTGAAGTGTTAATGGTG +
Preference number: 3 (lower is better)
Translates to: SLLNMLKSHTVAMFALTPRELKV*PEVLMV
Trigger: CACCATTAACACTTCAGGCAACACTTTCAGCTCCCT...TGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CCA 90 bp GTGAAGGAAGCTCTTCCTCCCTTGCCTCTACCAGCCCCAGTTCTCTTTCCTTGGCGCCGGAACTTGCCCTaGATTGCAAGGGCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: VKEALPPLPLPAPVLFPWRRNLP*IARAAF
Trigger: GAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCG...CCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTTCCTTCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR GCA 90 bp TTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTTCTGACTTCCTCAGGGTCAGATaGCTGGTTGGCTGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: FISRPVVPEPSAITGSSDFLRVR*LVGCWR
Trigger: CCTCCAGCAGCCAACCAGGCATCTGACCCTGAGGAA...GTCAGAAGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR GCA 90 bp CTGAACCTTCTGCCATCACTGGCTCTTCTGACCTCAGTCTGGATGGTGAAGGAAGGAATCGCCGGAACTTaGCCTGGATTGCAAGGGCGG +
Preference number: 4 (lower is better)
Translates to: LNLLPSLALLTSVWMVKEGIAGT*PGLQGR
Trigger: CCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCC...TTCCTTCACCATCCAGACTGAGGTCAGAAGAGCCAGTGATGGCAGAAGGTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CCA 90 bp AAGGAAGCTCTTCCTCCCTTGCCTCTACCAGCCCCAGTTCTCTTTCCTTGGGAGGGTCAGATGCCTGGTTaGCTGCTGGAGGTGTTTTGG +
Preference number: 4 (lower is better)
Translates to: KEALPPLPLPAPVLFPWEGQMPG*LLEVFW
Trigger: CCAAAACACCTCCAGCAGCCAACCAGGCATCTGACC...CTCCCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGAAGAGCTTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR GCA 90 bp TCAGTTTTCATTTCCCGGCCTGTCGTCCCTGAACCTTCTGCCATCACTGGCTCTGAACTTGCCCTGGATTaGAAGGGCGGCCTTCTCTGT +
Preference number: 4 (lower is better)
Translates to: SVFISRPVVPEPSAITGSELALD*KGGLLC
Trigger: ACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTC...AGAGCCAGTGATGGCAGAAGGTTCAGGGACGACAGGCCGGGAAATGAAAACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CCA 90 bp GCTTGCCCCCTCCTGCCCTTAGCATTAGGCAAAGGGGAGAATTTCACATCTCAATCAGGGTCAGATGCCTaGTTGGCTGCTGGAGGTGTT +
Preference number: 4 (lower is better)
Translates to: ACPLLPLALGKGENFTSQSGSDA*LAAGGV
Trigger: AACACCTCCAGCAGCCAACCAGGCATCTGACCCTGA...TTGAGATGTGAAATTCTCCCCTTTGCCTAATGCTAAGGGCAGGAGGGGGCAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 72 bp GAGATGGGAGGAGTTGTGCAGAGGGAGCTGAAAGTGTaGCCTGAAGTGTTAATGGTGCAACTGGCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: EMGGVVQRELKV*PEVLMVQLAEA
Trigger: GGCTTCTGCCAGTTGCACCATTAACACTTCAGGCAACACTTTCAGCTCCCTCTGCACAACTCCTCCCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CCA 90 bp AAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGGGCCTTCTCTGTCTCTaGCGCTGTCAGGTCAATGTC +
Preference number: 4 (lower is better)
Translates to: KHAKVTYSGDVCPDSTVGGLLCL*RCQVNV
Trigger: GACATTGACCTGACAGCGCCAGAGACAGAGAAGGCC...CCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
3UTR CAA 72 bp TCCTCCCTTGCCTCTACCAGCCCCAGTTCTCTTTCCTaGGGAGGAATCTACTCAGCATGCACTAGTGTAGTA +
Preference number: 4 (lower is better)
Translates to: SSLASTSPSSLS*GGIYSACTSVV
Trigger: TACTACACTAGTGCATGCTGAGTAGATTCCTCCCAAGGAAAGAGAACTGGGGCTGGTAGAGGCAAGGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CCA 90 bp AACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCACAGTGGGGTTGCCTGGTTGGCTGCTaGAGGTGTTTTGGTGTTAAG +
Preference number: 4 (lower is better)
Translates to: NMLKSHTVAMFALTPQWGCLVGC*RCFGVK
Trigger: CTTAACACCAAAACACCTCCAGCAGCCAACCAGGCA...ACCCCACTGTGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CCA 90 bp TCGCCGGAACTTGCCCTGGATTGCAAGGGCGGCCTTCTCTGTCTCTaGCGCTGTCAGGTCAATGTCAATTTCTTCCTCCTCCTCGGCCTT +
Preference number: 5 (lower is better)
Translates to: SPELALDCKGGLLCL*RCQVNVNFFLLLGL
Trigger: AAGGCCGAGGAGGAGGAAGAAATTGACATTGACCTGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CCA 90 bp GAGCTGGAATCCTTTTTCCTCTTCTGGAATCGCCGGAACTTGCCCTaGATTGCAAGGGCGGCCTTCTCTGTCTCTGGCGCTGTCAGGTCA +
Preference number: 5 (lower is better)
Translates to: ELESFFLFWNRRNLP*IARAAFSVSGAVRS
Trigger: TGACCTGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAAAAGGATTCCAGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS TCA 90 bp GCGCTGTCAGGTCAATGTCAATTTCTTCCTCCTCCTCGGCCTTCTTaGTGCTGCCAGGCTTCCCTTTTTCCTCAGGGTCAGATGCCTGGT +
Preference number: 5 (lower is better)
Translates to: ALSGQCQFLPPPRPS*CCQASLFPQGQMPG
Trigger: ACCAGGCATCTGACCCTGAGGAAAAAGGGAAGCCTGGCAGCATCAAGAAGGCCGAGGAGGAGGAAGAAATTGACATTGACCTGACAGCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS GCA 90 bp GGCCTTCTTGATGCTGCCAGGCTTCCCTTTTTCCTCAGGGTCAGATaGCTGGTTGGCTGCTGGAGGTGTTTTGGTGTTAAGCTCGCTCAT +
Preference number: 5 (lower is better)
Translates to: GLLDAARLPFFLRVR*LVGCWRCFGVKLAH
Trigger: ATGAGCGAGCTTAACACCAAAACACCTCCAGCAGCCAACCAGGCATCTGACCCTGAGGAAAAAGGGAAGCCTGGCAGCATCAAGAAGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CAA 90 bp CTCGTTCTGCTTTCCTTCCTAAACGTTTCTCAGTTTTCATTTCCCGGCCTGTCGGGAACTTGCCCTGGATaGCAAGGGCGGCCTTCTCTG +
Preference number: 5 (lower is better)
Translates to: LVLLSFLNVSQFSFPGLSGTCPG*QGRPSL
Trigger: CAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCC...CGACAGGCCGGGAAATGAAAACTGAGAAACGTTTAGGAAGGAAAGCAGAACGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CAA 90 bp TCATTATTAAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCATCCTCCTCGGCCTTCTaGATGCTGCCAGGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: SLLNMLKSHTVAMFALTPSSSAF*MLPGFP
Trigger: AGGGAAGCCTGGCAGCATCAAGAAGGCCGAGGAGGA...TGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS-3UTR CAA 90 bp TCATTATTAAACATGCTAAAGTCACATACAGTGGCGATGTTTGCCCTGACTCCATGGAATCGCCGGAACTaGCCCTGGATTGCAAGGGCG +
Preference number: 5 (lower is better)
Translates to: SLLNMLKSHTVAMFALTPWNRRN*PWIARA
Trigger: CGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCA...TGGAGTCAGGGCAAACATCGCCACTGTATGTGACTTTAGCATGTTTAATAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS GCA 72 bp TTTCCTCTTCTGGAATCGCCGGAACTTGCCCTGGATTaGAAGGGCGGCCTTCTCTGTCTCTGGCGCTGTCAG +
Preference number: 6 (lower is better)
Translates to: FPLLESPELALD*KGGLLCLWRCQ
Trigger: CTGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CCA 72 bp TCCTTTTTCCTCTTCTGGAATCGCCGGAACTTGCCCTaGATTGCAAGGGCGGCCTTCTCTGTCTCTGGCGCT +
Preference number: 6 (lower is better)
Translates to: SFFLFWNRRNLP*IARAAFSVSGA
Trigger: AGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAAAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CAA 72 bp TTTTCCTCTTCTGGAATCGCCGGAACTTGCCCTGGATaGCAAGGGCGGCCTTCTCTGTCTCTGGCGCTGTCA +
Preference number: 6 (lower is better)
Translates to: FSSSGIAGTCPG*QGRPSLSLALS
Trigger: TGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CAA 90 bp GGCGCTGTCAGGTCAATGTCAATTTCTTCCTCCTCCTCGGCCTTCTaGATGCTGCCAGGCTTCCCTTTTTCCTCAGGGTCAGATGCCTGG +
Preference number: 6 (lower is better)
Translates to: GAVRSMSISSSSSAF*MLPGFPFSSGSDAW
Trigger: CCAGGCATCTGACCCTGAGGAAAAAGGGAAGCCTGGCAGCATCAAGAAGGCCGAGGAGGAGGAAGAAATTGACATTGACCTGACAGCGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS CAA 90 bp TGGAATCCTTTTTCCTCTTCTGGAATCGCCGGAACTTGCCCTGGATaGCAAGGGCGGCCTTCTCTGTCTCTGGCGCTGTCAGGTCAATGT +
Preference number: 6 (lower is better)
Translates to: WNPFSSSGIAGTCPG*QGRPSLSLALSGQC
Trigger: ACATTGACCTGACAGCGCCAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAAAAGGATTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS GCA 72 bp TGGAATCCTTTTTCCTCTTCTGGAATCGCCGGAACTTaGCCTGGATTGCAAGGGCGGCCTTCTCTGTCTCTG +
Preference number: 6 (lower is better)
Translates to: WNPFSSSGIAGT*PGLQGRPSLSL
Trigger: CAGAGACAGAGAAGGCCGCCCTTGCAATCCAGGGCAAGTTCCGGCGATTCCAGAAGAGGAAAAAGGATTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2
CDS TCA 72 bp GGTCAATGTCAATTTCTTCCTCCTCCTCGGCCTTCTTaGTGCTGCCAGGCTTCCCTTTTTCCTCAGGGTCAG +
Preference number: 6 (lower is better)
Translates to: GQCQFLPPPRPS*CCQASLFPQGQ
Trigger: CTGACCCTGAGGAAAAAGGGAAGCCTGGCAGCATCAAGAAGGCCGAGGAGGAGGAAGAAATTGACATTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111332.2