Pregenerated sensors for PCP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090223Ensembl transcript IDs: ENSMUST00000061739.9, ENSMUST00000232906.2, ENSMUST00000233816.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAAAGCTTTGAGACTTGGTGGTGCAGTCTGGTATACAAAGCTTTaGGGAGATGGAAATAGGTGGATCCCCAGGGCTCCCTGGCCAGAC | + |
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Preference number: 1 (lower is better) Translates to: VKALRLGGAVWYTKL*GDGNRWIPRAPWPD Trigger: GTCTGGCCAGGGAGCCCTGGGGATCCACCTATTTCCATCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR GCA 90 bp | TCTGAACTGAGACTGAATGGCCACAGCTGCACGCTCTGTCTCTGGTaGATCCATGTCGATATCAAATTCTTCTTGGACTTTCTTCTGCCC | + |
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Preference number: 1 (lower is better) Translates to: SELRLNGHSCTLCLW*IHVDIKFFLDFLLP Trigger: GGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAGTCTCAGTTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR GCA 90 bp | TCTGGTGCATCCATGTCGATATCAAATTCTTCTTGGACTTTCTTCTaGCCATTGCATACATGGAAGAGACTCGGTGTAATCCCCAGGACC | + |
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Preference number: 1 (lower is better) Translates to: SGASMSISNSSWTFF*PLHTWKRLGVIPRT Trigger: GGTCCTGGGGATTACACCGAGTCTCTTCCATGTATGCAATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 90 bp | TTTTCTGAACTGAGACTGAATGGCCACAGCTGCACGCTCTGTCTCTaGTGCATCCATGTCGATATCAAATTCTTCTTGGACTTTCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: FSELRLNGHSCTLCL*CIHVDIKFFLDFLL Trigger: CAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAGTCTCAGTTCAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGTAGCAGGGTGTATCCCCAGGGCTCCCTaGCCAGACAGCTTAGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: GHKYYGFLFMHFRFVAGCIPRAP*PDSLAK Trigger: TTTTGCTAAGCTGTCTGGCCAGGGAGCCCTGGGGAT...ACACCCTGCTACAAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | TATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGTAGCACTTGGTGTCTTCAGGTaGACCAGGAAGCAGCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: YRGHKYYGFLFMHFRFVALGVFR*TRKQLH Trigger: GTGAAGCTGCTTCCTGGTCCACCTGAAGACACCAAG...TGCTACAAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCTATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 |
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| 3UTR-3UTR GCA 90 bp | CTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGCTTTCTTCTGCCCATTaGATACATGGAAGAGACTCG | + |
|
Preference number: 2 (lower is better) Translates to: LLTILLWIPAYRGHKYYGLSSAH*IHGRDS Trigger: CGAGTCTCTTCCATGTATGCAATGGGCAGAAGAAAG...CCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGTATTGAGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGCTTGGTGTCTTCAGGTaGACCAGGAAGCAGCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: CVLSEDDFSLGYCSFHFLLGVFR*TRKQLH Trigger: GTGAAGCTGCTTCCTGGTCCACCTGAAGACACCAAG...CAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACTCAATACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGAAAGCTTTGAGACTTGGTGGTGCAGTCTGGTATACAAAGCTTTGGGGAGATTTCTTGATGGATGGTaGTTGAACTTGGTGTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: CESFETWWCSLVYKALGRFLDGW*LNLVSS Trigger: TGAAGACACCAAGTTCAACCACCATCCATCAAGAAA...TCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | ATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCCTTGGTGGTGCAGTCTaGTATACAAAGCTTTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: ILLWIPAYRGHKYYGFLFLGGAV*YTKLWG Trigger: TCCCCAAAGCTTTGTATACCAGACTGCACCACCAAG...GAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGTTTCTTGATGGATGGTaGTTGAACTTGGTGTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: GDKQIKLLTILLWIPAYRFLDGW*LNLVSS Trigger: TGAAGACACCAAGTTCAACCACCATCCATCAAGAAA...CCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | GTCTGGTATACAAAGCTTTGGGGAGATGGAAATAGGTaGATCCCCAGGGCTCCCTGGCCAGACAGCTTAGCA | + |
|
Preference number: 3 (lower is better) Translates to: VWYTKLWGDGNR*IPRAPWPDSLA Trigger: TGCTAAGCTGTCTGGCCAGGGAGCCCTGGGGATCCACCTATTTCCATCTCCCCAAAGCTTTGTATACCAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | TTGAGACTTGGTGGTGCAGTCTGGTATACAAAGCTTTaGGGAGATGGAAATAGGTGGATCCCCAGGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: LRLGGAVWYTKL*GDGNRWIPRAP Trigger: GGGAGCCCTGGGGATCCACCTATTTCCATCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR GCA 72 bp | CCCCAGGACCCATGTGAAAGCTTTGAGACTTGGTGGTaGAGTCTGGTATACAAAGCTTTGGGGAGATGGAAA | + |
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Preference number: 3 (lower is better) Translates to: PQDPCESFETWW*SLVYKALGRWK Trigger: TTTCCATCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACATGGGTCCTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR GCA 72 bp | CTGGAATTTTCTGAACTGAGACTGAATGGCCACAGCTaGACGCTCTGTCTCTGGTGCATCCATGTCGATATC | + |
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Preference number: 3 (lower is better) Translates to: LEFSELRLNGHS*TLCLWCIHVDI Trigger: GATATCGACATGGATGCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAGTCTCAGTTCAGAAAATTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | AATCCCCAGGACCCATGTGAAAGCTTTGAGACTTGGTaGTGCAGTCTGGTATACAAAGCTTTGGGGAGATGG | + |
|
Preference number: 3 (lower is better) Translates to: NPQDPCESFETW*CSLVYKALGRW Trigger: CCATCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACATGGGTCCTGGGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | CTGAGACTGAATGGCCACAGCTGCACGCTCTGTCTCTaGTGCATCCATGTCGATATCAAATTCTTCTTGGAC | + |
|
Preference number: 3 (lower is better) Translates to: LRLNGHSCTLCL*CIHVDIKFFLD Trigger: GTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAGTCTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | TGTAATCCCCAGGACCCATGTGAAAGCTTTGAGACTTaGTGGTGCAGTCTGGTATACAAAGCTTTGGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: CNPQDPCESFET*WCSLVYKALGR Trigger: TCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACATGGGTCCTGGGGATTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR GCA 72 bp | AGACTGAATGGCCACAGCTGCACGCTCTGTCTCTGGTaGATCCATGTCGATATCAAATTCTTCTTGGACTTT | + |
|
Preference number: 3 (lower is better) Translates to: RLNGHSCTLCLW*IHVDIKFFLDF Trigger: AAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CCA 72 bp | ACCCATGTGAAAGCTTTGAGACTTGGTGGTGCAGTCTaGTATACAAAGCTTTGGGGAGATGGAAATAGGTGG | + |
|
Preference number: 3 (lower is better) Translates to: THVKALRLGGAV*YTKLWGDGNRW Trigger: CCACCTATTTCCATCTCCCCAAAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACATGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR-3UTR CAA 90 bp | GAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGATGGTGGTTGAACTaGGTGTCTTCAGGTGGACCA | + |
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Preference number: 3 (lower is better) Translates to: EINRLSYSQFYCGYLPIGGWWLN*VSSGGP Trigger: TGGTCCACCTGAAGACACCAAGTTCAACCACCATCC...CCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 |
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| 3UTR-3UTR CAA 90 bp | GATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGGTAGCAGGGTGTGTATaGAGTGAGGATGACTTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: DKQIKLLTILLWIPAYRGVAGCV*SEDDFS Trigger: AGAGAAGTCATCCTCACTCAATACACACCCTGCTAC...CCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| 3UTR-3UTR CAA 90 bp | ATGGAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGTAGCAGGGTGTGTATaGAGTGAGGATGACTTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: MEINRLSYSQFYCGYLPIVAGCV*SEDDFS Trigger: AGAGAAGTCATCCTCACTCAATACACACCCTGCTAC...TATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | CCAGGAAGCAGCTTCACCACTAGGACTGTGATCCTGCCTTTTTCTTCTGGAATTTCTTGTCTTTTCCGTTaGTCGCTCCGGCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: PGSSFTTRTVILPFSSGISCLFR*SLRHFV Trigger: GACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGA...AATTCCAGAAGAAAAAGGCAGGATCACAGTCCTAGTGGTGAAGCTGCTTCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| 3UTR CAA 72 bp | AGACTCGGTGTAATCCCCAGGACCCATGTGAAAGCTTaGAGACTTGGTGGTGCAGTCTGGTATACAAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: RLGVIPRTHVKA*RLGGAVWYTKL Trigger: AAGCTTTGTATACCAGACTGCACCACCAAGTCTCAAAGCTTTCACATGGGTCCTGGGGATTACACCGAGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| CDS-3UTR GCA 90 bp | GGAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGCTGAATGGCCACAGCTaGACGCTCTGTCTCTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GDKQIKLLTILLWIPAYRLNGHS*TLCLWC Trigger: GCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAG...CCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR GCA 90 bp | GTATTGAGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGATGCTGAATGGCCACAGCTaGACGCTCTGTCTCTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VLSEDDFSLGYCSFHFLMLNGHS*TLCLWC Trigger: GCACCAGAGACAGAGCGTGCAGCTGTGGCCATTCAG...CATCAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACTCAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | TACCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTCTTGTCTTTTCCGTTaGTCGCTCCGGCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: YLPIGGINTMGFSSCISGSCLFR*SLRHFV Trigger: GACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGA...ACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | TACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCCTTGGTGGTGCAGTCTaGTATACAAAGCTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: YCGYLPIGGINTMGFSSCLGGAV*YTKLWG Trigger: TCCCCAAAGCTTTGTATACCAGACTGCACCACCAAG...GCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | TTGAGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGATGGATATCCCCAGGGCTCCCTaGCCAGACAGCTTAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LSEDDFSLGYCSFHFLMDIPRAP*PDSLAK Trigger: TTTTGCTAAGCTGTCTGGCCAGGGAGCCCTGGGGAT...ATCCATCAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR TCA 90 bp | CTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGCCCATCATTATCTCCTaGCGTCTTGTCTTTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: LLTILLWIPAYRGHKYYGPIIIS*RLVFSV Trigger: AACGGAAAAGACAAGACGTCAGGAGATAATGATGGG...CCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS-3UTR TCA 90 bp | TTTTCATTTCTTGATGGATGGTGGTTGAACTTGGTGTCTTCAGGTGGACCAGGATCTTCTGGAATTTTCTaGACTGAGACTGAATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: FSFLDGWWLNLVSSGGPGSSGIF*TETEWP Trigger: TGGCCATTCAGTCTCAGTTCAGAAAATTCCAGAAGA...TCCTGGTCCACCTGAAGACACCAAGTTCAACCACCATCCATCAAGAAATGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS-3UTR TCA 90 bp | TACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCTCTGTCATTATCTCCTaGCGTCTTGTCTTTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: YCGYLPIGGINTMGFSSCSVIIS*RLVFSV Trigger: AACGGAAAAGACAAGACGTCAGGAGATAATGACAGA...GCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000232906.2 |
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| CDS-3UTR GCA 90 bp | TTCATGCATTTCAGGTTTGTAGCAGGGTGTGTATTGAGTGAGGATGACTTCTCTACGCTCTGTCTCTGGTaGATCCATGTCGATATCAAA | + |
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Preference number: 4 (lower is better) Translates to: FMHFRFVAGCVLSEDDFSTLCLW*IHVDIK Trigger: TTTGATATCGACATGGATGCACCAGAGACAGAGCGT...AGAGAAGTCATCCTCACTCAATACACACCCTGCTACAAACCTGAAATGCATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR GCA 90 bp | AGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGTAGCAGGGTTTGAGACTTGGTGGTaGAGTCTGGTATACAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: RGHKYYGFLFMHFRFVAGFETWW*SLVYKA Trigger: AGCTTTGTATACCAGACTGCACCACCAAGTCTCAAA...CCCTGCTACAAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR GCA 90 bp | CTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGTCTTGGACTTTCTTCTaGCCATATGGAAGAGACTCG | + |
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Preference number: 4 (lower is better) Translates to: LLTILLWIPAYRGHKYYGSWTFF*PYGRDS Trigger: CGAGTCTCTTCCATATGGGCAGAAGAAAGTCCAAGA...CCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | AAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATACTATTGCACGCTCTGTCTCTaGTGCATCCATGTCGATATC | + |
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Preference number: 4 (lower is better) Translates to: KLLTILLWIPAYRGHKYYCTLCL*CIHVDI Trigger: GATATCGACATGGATGCACCAGAGACAGAGCGTGCA...ATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | TACTGTGGATACCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCTGGTATACAAAGCTTTaGGGAGATGGAAATAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: YCGYLPIGGINTMGFSSCWYTKL*GDGNRW Trigger: CCACCTATTTCCATCTCCCCAAAGCTTTGTATACCA...GCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGGTATCCACAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR TCA 90 bp | AGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATTCACCACTAGGACTGTaGTCCTGCCTTTTTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: RLSYSQFYCGYLPIGGINSPLGL*SCLFLL Trigger: CAGAAGAAAAAGGCAGGATCACAGTCCTAGTGGTGA...ATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR GCA 90 bp | TTCATGCATTTCAGGTTTGTAGCAGGGTGTGTATTGAGTGAGGATGACTTCTCTTCTTGGACTTTCTTCTaGCCATCATTATCTCCTGAC | + |
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Preference number: 4 (lower is better) Translates to: FMHFRFVAGCVLSEDDFSSWTFF*PSLSPD Trigger: GTCAGGAGATAATGATGGGCAGAAGAAAGTCCAAGA...AGAGAAGTCATCCTCACTCAATACACACCCTGCTACAAACCTGAAATGCATGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS-3UTR CCA 90 bp | GTATTGAGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGATGTCTTGTCTTTTCCGTTaGTCGCTCCGGCACTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: VLSEDDFSLGYCSFHFLMSCLFR*SLRHFV Trigger: GACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGA...CATCAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACTCAATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| CDS-3UTR GCA 90 bp | AGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGATGGATGGTACGCTCTGTCTCTGGTaGATCCATGTCGATATCAAA | + |
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Preference number: 4 (lower is better) Translates to: SEDDFSLGYCSFHFLMDGTLCLW*IHVDIK Trigger: TTTGATATCGACATGGATGCACCAGAGACAGAGCGT...ACCATCCATCAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | GAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGAAAGCTTTGAGACTTaGTGGTGCAGTCTGGTATAC | + |
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Preference number: 4 (lower is better) Translates to: EINRLSYSQFYCGYLPIGESFET*WCSLVY Trigger: GTATACCAGACTGCACCACCAAGTCTCAAAGCTTTC...CCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR TCA 90 bp | AGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATTCTTCTGGAATTTTCTaGACTGAGACTGAATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: RLSYSQFYCGYLPIGGINSSGIF*TETEWP Trigger: TGGCCATTCAGTCTCAGTTCAGAAAATTCCAGAAGA...ATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000233816.2 |
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| CDS-3UTR TCA 90 bp | TATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGTAGCAAGACTCATTATCTCCTaGCGTCTTGTCTTTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: YRGHKYYGFLFMHFRFVARLIIS*RLVFSV Trigger: AACGGAAAAGACAAGACGTCAGGAGATAATGAGTCT...TGCTACAAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR CCA 90 bp | AGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATAGGGGGCATAAATATATCAAATTCTTCTTaGACTTTCTTCTGCCCATCA | + |
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Preference number: 4 (lower is better) Translates to: RLSYSQFYCGYLPIGGINISNSS*TFFCPS Trigger: TGATGGGCAGAAGAAAGTCCAAGAAGAATTTGATAT...ATTTATGCCCCCTATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS-3UTR CAA 90 bp | GATGGATGGTGGTTGAACTTGGTGTCTTCAGGTGGACCAGGAAGCAGCTTCACCGTCTTGTCTTTTCCGTaGGTCGCTCCGGCACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: DGWWLNLVSSGGPGSSFTVLSFP*VAPALC Trigger: ACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGAC...GGTGAAGCTGCTTCCTGGTCCACCTGAAGACACCAAGTTCAACCACCATCCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 |
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| CDS-3UTR CAA 90 bp | CTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGGTCTTGTCTTTTCCGTaGGTCGCTCCGGCACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: LPIGGINTMGFSSCISGLVLSFP*VAPALC Trigger: ACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGAC...CAAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| CDS CCA 90 bp | GCACGCTCTGTCTCTGGTGCATCCATGTCGATATCAAATTCTTCTTaGACTTTCTTCTGCCCATCATTATCTCCTGACGTCTTGTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: ARSVSGASMSISNSS*TFFCPSLSPDVLSF Trigger: AAAAGACAAGACGTCAGGAGATAATGATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS CCA 90 bp | ATCCATGTCGATATCAAATTCTTCTTGGACTTTCTTCTGCCCATATaGAAGAGACTCGGTGTAATCCCCAGGACCCATGTGAAAGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: IHVDIKFFLDFLLPI*KRLGVIPRTHVKAL Trigger: CAAAGCTTTCACATGGGTCCTGGGGATTACACCGAGTCTCTTCCATATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS-3UTR CAA 90 bp | AATGGAGATAAACAGATTAAGCTACTCACAATTTTACTGTGGATACCTGCCTATGTCTTGTCTTTTCCGTaGGTCGCTCCGGCACTTTGT | + |
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Preference number: 5 (lower is better) Translates to: NGDKQIKLLTILLWIPAYVLSFP*VAPALC Trigger: ACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGAC...ATAGGCAGGTATCCACAGTAAAATTGTGAGTAGCTTAATCTGTTTATCTCCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000061739.9 ENSMUST00000232906.2 ENSMUST00000233816.2 |
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| CDS-3UTR CAA 90 bp | CCTGCCTATAGGGGGCATAAATACTATGGGTTTCTCTTCATGCATTTCAGGTTTGATATCAAATTCTTCTaGGACTTTCTTCTGCCCATC | + |
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Preference number: 5 (lower is better) Translates to: PAYRGHKYYGFLFMHFRFDIKFF*DFLLPI Trigger: GATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATC...AAACCTGAAATGCATGAAGAGAAACCCATAGTATTTATGCCCCCTATAGGCAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS-3UTR CAA 90 bp | GTATTGAGTGAGGATGACTTCTCTCTAGGGTATTGTTCTTTTCATTTCTTGATGGATATCAAATTCTTCTaGGACTTTCTTCTGCCCATA | + |
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Preference number: 5 (lower is better) Translates to: VLSEDDFSLGYCSFHFLMDIKFF*DFLLPI Trigger: TATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATC...CATCAAGAAATGAAAAGAACAATACCCTAGAGAGAAGTCATCCTCACTCAATAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS TCA 72 bp | CTCCAGGCTAGGTTCGGTGAAAGACTCATTATCTCCTaGCGTCTTGTCTTTTCCGTTGGTCGCTCCGGCACT | + |
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Preference number: 6 (lower is better) Translates to: LQARFGERLIIS*RLVFSVGRSGT Trigger: AGTGCCGGAGCGACCAACGGAAAAGACAAGACGTCAGGAGATAATGAGTCTTTCACCGAACCTAGCCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS CAA 72 bp | TGGACTTTCTTCTGCCCATCATTATCTCCTGACGTCTaGTCTTTTCCGTTGGTCGCTCCGGCACTTTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: WTFFCPSLSPDV*SFPLVAPALCL Trigger: GAGACAAAGTGCCGGAGCGACCAACGGAAAAGACAAGACGTCAGGAGATAATGATGGGCAGAAGAAAGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061739.9 |
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| CDS CAA 90 bp | TGCACGCTCTGTCTCTGGTGCATCCATGTCGATATCAAATTCTTCTaGGACTTTCTTCTGCCCATATGGAAGAGACTCGGTGTAATCCCC | + |
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Preference number: 6 (lower is better) Translates to: CTLCLWCIHVDIKFF*DFLLPIWKRLGVIP Trigger: GGGGATTACACCGAGTCTCTTCCATATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACAGAGCGTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS CCA 72 bp | GTCTCTGGTGCATCCATGTCGATATCAAATTCTTCTTaGACTTTCTTCTGCCCATATGGAAGAGACTCGGTG | + |
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Preference number: 6 (lower is better) Translates to: VSGASMSISNSS*TFFCPYGRDSV Trigger: CACCGAGTCTCTTCCATATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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| CDS CAA 72 bp | TGTCTCTGGTGCATCCATGTCGATATCAAATTCTTCTaGGACTTTCTTCTGCCCATATGGAAGAGACTCGGT | + |
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Preference number: 6 (lower is better) Translates to: CLWCIHVDIKFF*DFLLPIWKRLG Trigger: ACCGAGTCTCTTCCATATGGGCAGAAGAAAGTCCAAGAAGAATTTGATATCGACATGGATGCACCAGAGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233816.2 |
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